Query 017701
Match_columns 367
No_of_seqs 262 out of 2067
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2719 Metalloprotease [Gener 100.0 1.3E-74 2.9E-79 561.9 39.3 359 3-367 6-371 (428)
2 PRK03001 M48 family peptidase; 100.0 2.3E-33 5E-38 268.0 24.9 199 151-367 2-206 (283)
3 PRK01265 heat shock protein Ht 100.0 1.8E-32 4E-37 264.1 26.1 174 187-367 49-227 (324)
4 PRK03982 heat shock protein Ht 100.0 2.2E-32 4.7E-37 262.0 24.7 204 150-367 2-211 (288)
5 PRK03072 heat shock protein Ht 100.0 4.3E-28 9.4E-33 231.9 25.2 200 151-367 6-211 (288)
6 PRK02391 heat shock protein Ht 100.0 6E-28 1.3E-32 231.5 25.7 174 184-367 41-218 (296)
7 PRK02870 heat shock protein Ht 100.0 2.6E-27 5.5E-32 229.7 25.4 169 185-367 76-257 (336)
8 PRK04897 heat shock protein Ht 100.0 1.9E-27 4.1E-32 228.6 23.7 175 183-367 44-231 (298)
9 PRK01345 heat shock protein Ht 100.0 4.6E-27 9.9E-32 227.4 25.4 172 183-367 31-207 (317)
10 PRK05457 heat shock protein Ht 99.9 2.5E-25 5.4E-30 212.3 25.3 167 188-367 43-222 (284)
11 PF01435 Peptidase_M48: Peptid 99.9 2.7E-25 5.8E-30 204.4 1.2 160 192-367 6-167 (226)
12 COG0501 HtpX Zn-dependent prot 99.9 2.1E-20 4.5E-25 179.6 25.4 168 185-367 59-236 (302)
13 COG4783 Putative Zn-dependent 99.4 9.4E-12 2E-16 123.4 14.9 87 209-302 62-154 (484)
14 PF05569 Peptidase_M56: BlaR1 99.3 3.4E-11 7.4E-16 116.0 16.5 91 207-304 131-222 (299)
15 KOG2661 Peptidase family M48 [ 99.2 1.9E-10 4.2E-15 108.8 13.2 73 235-314 239-311 (424)
16 COG4784 Putative Zn-dependent 99.0 1.6E-09 3.5E-14 103.1 11.6 83 214-303 61-149 (479)
17 COG4219 MecR1 Antirepressor re 98.8 5.5E-08 1.2E-12 92.5 13.0 86 216-308 135-220 (337)
18 PRK04351 hypothetical protein; 97.0 0.0034 7.3E-08 54.5 8.0 71 214-289 1-72 (149)
19 PF01863 DUF45: Protein of unk 97.0 0.0016 3.5E-08 58.9 6.2 72 216-297 111-183 (205)
20 COG1451 Predicted metal-depend 96.9 0.0031 6.8E-08 58.4 7.1 72 217-298 123-195 (223)
21 PF04228 Zn_peptidase: Putativ 95.9 0.023 5.1E-07 54.6 7.3 76 219-294 99-186 (292)
22 PF06114 DUF955: Domain of unk 95.8 0.019 4E-07 46.5 5.5 34 259-297 28-61 (122)
23 PF04298 Zn_peptidase_2: Putat 95.6 0.92 2E-05 41.8 15.9 83 203-294 20-105 (222)
24 PF10026 DUF2268: Predicted Zn 95.2 0.067 1.5E-06 48.4 7.3 74 218-293 4-80 (195)
25 smart00731 SprT SprT homologue 94.7 0.072 1.6E-06 45.9 5.8 67 218-292 2-73 (146)
26 PF10263 SprT-like: SprT-like 94.0 0.25 5.4E-06 42.7 7.8 32 261-293 44-75 (157)
27 PF13203 DUF2201_N: Putative m 93.8 0.12 2.5E-06 49.7 5.7 41 258-299 41-81 (292)
28 COG3091 SprT Zn-dependent meta 93.6 0.17 3.6E-06 43.7 5.5 68 216-290 4-73 (156)
29 PF08325 WLM: WLM domain; Int 92.5 0.31 6.7E-06 43.9 6.0 71 219-296 25-100 (186)
30 PF13699 DUF4157: Domain of un 92.3 0.24 5.3E-06 38.2 4.4 61 226-292 10-75 (79)
31 PF04450 BSP: Peptidase of pla 92.1 0.38 8.2E-06 44.0 6.2 47 247-294 61-112 (205)
32 PF12388 Peptidase_M57: Dual-a 91.8 0.36 7.8E-06 44.2 5.6 33 258-293 116-149 (211)
33 PF12725 DUF3810: Protein of u 91.2 0.94 2E-05 44.2 8.2 18 274-291 192-209 (318)
34 COG4900 Predicted metallopepti 90.4 0.85 1.8E-05 37.3 5.9 73 217-290 7-92 (133)
35 PRK04860 hypothetical protein; 89.6 1.2 2.5E-05 39.2 6.6 34 258-292 44-77 (160)
36 COG2856 Predicted Zn peptidase 87.5 1.1 2.3E-05 41.3 5.2 30 260-294 59-88 (213)
37 PF02031 Peptidase_M7: Strepto 85.7 1.3 2.8E-05 37.2 4.3 38 248-290 52-89 (132)
38 cd04268 ZnMc_MMP_like Zinc-dep 85.0 0.72 1.6E-05 39.9 2.7 31 259-290 72-106 (165)
39 COG3864 Uncharacterized protei 84.6 1.2 2.6E-05 43.0 4.1 76 217-296 5-87 (396)
40 COG2321 Predicted metalloprote 84.1 2.7 5.8E-05 39.9 6.1 72 222-293 99-182 (295)
41 PF13485 Peptidase_MA_2: Pepti 83.3 1.5 3.3E-05 35.3 3.8 36 257-296 8-43 (128)
42 TIGR02289 M3_not_pepF oligoend 81.8 0.97 2.1E-05 47.4 2.5 73 217-295 272-354 (549)
43 cd04269 ZnMc_adamalysin_II_lik 80.4 4 8.6E-05 36.5 5.7 40 248-290 103-143 (194)
44 cd04279 ZnMc_MMP_like_1 Zinc-d 80.3 1.1 2.3E-05 38.8 1.9 16 275-290 101-116 (156)
45 TIGR00181 pepF oligoendopeptid 79.6 1.5 3.3E-05 46.3 3.1 45 244-295 349-395 (591)
46 cd06258 Peptidase_M3_like The 78.5 4 8.8E-05 40.2 5.6 49 245-295 111-171 (365)
47 PF09768 Peptidase_M76: Peptid 78.1 6 0.00013 35.2 5.9 67 217-293 16-86 (173)
48 cd06459 M3B_Oligoendopeptidase 77.8 2.1 4.6E-05 42.9 3.5 46 244-295 192-239 (427)
49 cd06455 M3A_TOP Peptidase M3 T 77.7 4.3 9.4E-05 41.7 5.7 50 243-294 213-279 (472)
50 TIGR02290 M3_fam_3 oligoendope 76.6 2.9 6.2E-05 44.3 4.1 45 244-294 345-391 (587)
51 PF00413 Peptidase_M10: Matrix 76.3 1.3 2.7E-05 37.8 1.1 31 259-290 85-117 (154)
52 COG1164 Oligoendopeptidase F [ 75.3 1.6 3.5E-05 46.3 1.9 44 246-295 352-397 (598)
53 TIGR03793 TOMM_pelo TOMM prope 75.2 8.4 0.00018 29.6 5.3 55 215-283 15-76 (77)
54 PF11694 DUF3290: Protein of u 75.2 50 0.0011 28.6 10.7 89 150-242 15-104 (149)
55 PF01432 Peptidase_M3: Peptida 75.2 3.6 7.7E-05 42.0 4.3 55 236-292 187-256 (458)
56 cd04270 ZnMc_TACE_like Zinc-de 74.2 2 4.4E-05 40.2 2.0 18 274-291 163-180 (244)
57 PF14247 DUF4344: Domain of un 73.0 11 0.00024 34.8 6.5 42 247-290 47-104 (220)
58 KOG2290 Rhomboid family protei 72.7 16 0.00034 37.3 7.8 44 65-126 543-586 (652)
59 PF01447 Peptidase_M4: Thermol 72.2 2.7 5.9E-05 36.5 2.2 40 247-290 108-147 (150)
60 cd04277 ZnMc_serralysin_like Z 72.0 8.2 0.00018 34.2 5.4 31 260-290 94-125 (186)
61 PF13582 Reprolysin_3: Metallo 70.3 2.3 5E-05 34.9 1.3 11 280-290 109-119 (124)
62 cd00203 ZnMc Zinc-dependent me 69.7 2.9 6.4E-05 36.0 1.9 27 260-290 82-108 (167)
63 COG2738 Predicted Zn-dependent 69.4 31 0.00068 31.3 8.2 81 205-294 25-108 (226)
64 PF05572 Peptidase_M43: Pregna 68.5 2.7 5.8E-05 36.6 1.4 25 274-298 65-90 (154)
65 cd06460 M32_Taq Peptidase fami 68.2 10 0.00022 38.2 5.6 72 212-293 102-174 (396)
66 cd04272 ZnMc_salivary_gland_MP 67.7 4 8.7E-05 37.4 2.4 38 249-290 120-157 (220)
67 KOG1047 Bifunctional leukotrie 67.7 7.1 0.00015 40.6 4.3 46 235-290 255-300 (613)
68 COG3590 PepO Predicted metallo 67.3 1.4 3.1E-05 45.7 -0.7 42 247-290 449-499 (654)
69 PRK06926 flagellar motor prote 67.2 1.2E+02 0.0026 29.0 14.2 34 268-302 120-153 (271)
70 PF13688 Reprolysin_5: Metallo 67.1 4.1 8.8E-05 36.3 2.3 17 274-290 138-154 (196)
71 PF13574 Reprolysin_2: Metallo 66.6 2.9 6.4E-05 36.9 1.3 12 279-290 112-123 (173)
72 PRK09109 motC flagellar motor 66.3 1.2E+02 0.0025 28.5 14.4 32 270-302 117-148 (246)
73 cd04278 ZnMc_MMP Zinc-dependen 66.2 2.7 6E-05 36.2 1.0 33 258-290 84-119 (157)
74 COG4324 Predicted aminopeptida 66.1 4.4 9.5E-05 38.4 2.3 35 265-299 182-221 (376)
75 PF14891 Peptidase_M91: Effect 65.5 23 0.00049 31.3 6.7 17 275-291 100-116 (174)
76 PF10463 Peptidase_U49: Peptid 64.9 4.4 9.5E-05 37.1 2.1 21 276-296 99-119 (206)
77 PRK08990 flagellar motor prote 64.2 1.3E+02 0.0027 28.5 11.8 79 211-303 68-146 (254)
78 KOG3314 Ku70-binding protein [ 64.0 7.6 0.00016 34.1 3.2 43 251-296 66-109 (194)
79 COG1054 Predicted sulfurtransf 63.5 15 0.00033 35.4 5.4 43 207-255 9-52 (308)
80 cd04267 ZnMc_ADAM_like Zinc-de 62.9 3 6.4E-05 37.2 0.6 16 275-290 130-145 (192)
81 COG3824 Predicted Zn-dependent 62.4 6.3 0.00014 32.8 2.3 30 260-290 85-121 (136)
82 PF01421 Reprolysin: Reprolysi 60.9 6.7 0.00014 35.2 2.5 38 249-289 104-142 (199)
83 cd04271 ZnMc_ADAM_fungal Zinc- 57.6 3.8 8.2E-05 38.0 0.3 11 280-290 147-157 (228)
84 PF08014 DUF1704: Domain of un 57.5 22 0.00047 35.2 5.6 70 211-292 106-180 (349)
85 cd06456 M3A_DCP_Oligopeptidase 57.1 13 0.00028 37.8 4.0 52 243-296 160-226 (422)
86 PF13583 Reprolysin_4: Metallo 56.9 5.2 0.00011 36.4 1.1 11 280-290 139-149 (206)
87 COG1291 MotA Flagellar motor c 56.4 89 0.0019 29.8 9.2 90 201-302 60-149 (266)
88 PF06262 DUF1025: Possibl zinc 55.9 15 0.00033 29.5 3.4 35 259-293 49-88 (97)
89 PRK01415 hypothetical protein; 55.9 28 0.0006 32.8 5.8 44 207-256 9-53 (247)
90 TIGR02414 pepN_proteo aminopep 55.5 24 0.00051 39.3 6.0 18 276-293 281-298 (863)
91 PF01433 Peptidase_M1: Peptida 54.3 6.9 0.00015 38.6 1.6 69 219-293 234-310 (390)
92 PF01431 Peptidase_M13: Peptid 54.3 10 0.00022 34.0 2.6 37 258-294 7-52 (206)
93 PF15061 DUF4538: Domain of un 54.1 24 0.00053 25.5 3.8 24 186-209 9-32 (58)
94 PRK08456 flagellar motor prote 53.4 2E+02 0.0043 27.1 14.1 69 211-294 69-140 (257)
95 TIGR02421 QEGLA conserved hypo 53.0 26 0.00056 35.0 5.3 64 213-287 133-197 (366)
96 COG2274 SunT ABC-type bacterio 52.5 1.6E+02 0.0036 32.1 11.7 59 115-175 231-289 (709)
97 PF10023 DUF2265: Predicted am 51.0 9.2 0.0002 37.6 1.8 34 265-298 150-188 (337)
98 smart00235 ZnMc Zinc-dependent 50.8 7.6 0.00017 32.6 1.1 12 279-290 87-98 (140)
99 PRK14015 pepN aminopeptidase N 50.6 31 0.00067 38.5 6.0 18 276-293 294-311 (875)
100 PRK13267 archaemetzincin-like 49.5 53 0.0012 29.3 6.3 17 277-293 124-141 (179)
101 PRK08124 flagellar motor prote 49.4 2.4E+02 0.0051 26.7 14.3 32 270-302 118-149 (263)
102 cd04327 ZnMc_MMP_like_3 Zinc-d 48.6 12 0.00025 33.8 2.0 15 276-290 90-104 (198)
103 PF02163 Peptidase_M50: Peptid 47.6 12 0.00026 33.2 1.9 13 278-290 7-19 (192)
104 cd04276 ZnMc_MMP_like_2 Zinc-d 46.4 13 0.00029 33.7 2.0 35 260-294 92-133 (197)
105 PRK12721 secretion system appa 46.3 2.9E+02 0.0063 27.4 11.5 27 216-242 230-263 (349)
106 PRK05320 rhodanese superfamily 46.0 26 0.00056 33.1 3.9 44 207-256 7-51 (257)
107 PF11085 YqhR: Conserved membr 45.8 1.1E+02 0.0024 27.1 7.5 68 155-228 73-140 (173)
108 PRK09509 fieF ferrous iron eff 45.6 2.8E+02 0.006 26.5 16.9 16 215-230 210-225 (299)
109 PRK13109 flhB flagellar biosyn 45.4 3.2E+02 0.007 27.2 11.8 27 216-242 239-272 (358)
110 TIGR02412 pepN_strep_liv amino 45.3 34 0.00073 38.0 5.3 33 260-292 265-301 (831)
111 PRK06298 type III secretion sy 44.9 3.2E+02 0.0069 27.2 11.6 27 216-242 231-264 (356)
112 PF15048 OSTbeta: Organic solu 44.4 33 0.00071 28.7 3.8 33 3-35 33-65 (125)
113 COG0772 FtsW Bacterial cell di 43.7 1.3E+02 0.0027 30.3 8.6 25 259-289 260-284 (381)
114 cd05709 S2P-M50 Site-2 proteas 42.8 16 0.00034 32.2 1.8 13 278-290 8-20 (180)
115 cd04273 ZnMc_ADAMTS_like Zinc- 42.5 4.9 0.00011 36.4 -1.5 35 249-290 116-152 (207)
116 KOG3607 Meltrins, fertilins an 42.0 42 0.00091 36.6 5.2 71 217-290 256-335 (716)
117 TIGR01404 FlhB_rel_III type II 41.5 3.6E+02 0.0078 26.6 11.8 26 216-241 229-261 (342)
118 cd06163 S2P-M50_PDZ_RseP-like 41.5 15 0.00032 32.9 1.5 12 279-290 10-21 (182)
119 cd06161 S2P-M50_SpoIVFB SpoIVF 40.5 18 0.00038 33.0 1.8 14 277-290 37-50 (208)
120 PRK09672 phage exclusion prote 40.2 19 0.00041 34.7 2.0 21 275-295 162-182 (305)
121 PF02074 Peptidase_M32: Carbox 40.1 82 0.0018 32.8 6.8 68 214-290 204-271 (494)
122 PF09973 DUF2208: Predicted me 40.0 3.2E+02 0.0069 25.6 10.5 25 5-29 25-49 (233)
123 COG4823 AbiF Abortive infectio 39.4 19 0.00042 33.9 1.9 14 275-288 89-102 (299)
124 PF06861 BALF1: BALF1 protein; 38.9 24 0.00052 31.2 2.3 25 271-295 125-149 (182)
125 COG1377 FlhB Flagellar biosynt 38.2 3.7E+02 0.008 26.9 10.7 28 140-167 138-165 (363)
126 TIGR00328 flhB flagellar biosy 37.3 4.2E+02 0.0092 26.2 13.0 27 216-242 230-263 (347)
127 PF12315 DUF3633: Protein of u 36.9 18 0.0004 33.0 1.3 19 272-291 88-106 (212)
128 PF11990 DUF3487: Protein of u 36.8 2.5E+02 0.0054 23.4 12.3 42 189-233 58-100 (121)
129 cd06164 S2P-M50_SpoIVFB_CBS Sp 36.7 22 0.00047 33.0 1.8 14 277-290 52-65 (227)
130 TIGR02411 leuko_A4_hydro leuko 36.6 22 0.00047 37.9 2.0 28 262-292 266-293 (601)
131 TIGR03296 M6dom_TIGR03296 M6 f 36.5 8.4 0.00018 36.9 -1.0 12 279-290 166-177 (286)
132 PF14715 FixP_N: N-terminal do 36.4 54 0.0012 23.1 3.3 25 178-202 20-44 (51)
133 PF04138 GtrA: GtrA-like prote 36.3 2E+02 0.0044 22.7 7.5 47 131-178 43-90 (117)
134 PF13398 Peptidase_M50B: Pepti 36.0 22 0.00048 32.2 1.7 16 275-290 19-34 (200)
135 TIGR00782 ccoP cytochrome c ox 35.8 62 0.0014 30.9 4.9 25 179-203 27-51 (285)
136 TIGR03750 conj_TIGR03750 conju 35.8 2.5E+02 0.0054 23.1 12.2 37 194-233 60-96 (111)
137 PRK09108 type III secretion sy 35.7 4.5E+02 0.0098 26.1 11.5 27 216-242 232-265 (353)
138 COG0308 PepN Aminopeptidase N 34.5 72 0.0016 35.6 5.7 76 217-295 245-324 (859)
139 COG3965 Predicted Co/Zn/Cd cat 34.2 2.4E+02 0.0052 27.0 8.1 23 218-240 230-256 (314)
140 PF15061 DUF4538: Domain of un 34.2 30 0.00066 25.0 1.8 25 37-61 24-48 (58)
141 COG3402 Uncharacterized conser 33.5 2.3E+02 0.005 24.8 7.4 44 159-202 26-70 (161)
142 cd06160 S2P-M50_like_2 Unchara 33.1 28 0.0006 31.2 1.8 15 276-290 39-53 (183)
143 KOG3624 M13 family peptidase [ 33.0 32 0.0007 37.1 2.7 44 247-293 480-533 (687)
144 cd06159 S2P-M50_PDZ_Arch Uncha 32.9 26 0.00056 33.3 1.7 14 277-290 117-130 (263)
145 COG4972 PilM Tfp pilus assembl 32.9 67 0.0014 31.6 4.5 60 215-291 56-116 (354)
146 PRK12772 bifunctional flagella 32.7 5.8E+02 0.012 27.4 11.9 27 216-242 493-526 (609)
147 PRK10699 phosphatidylglyceroph 32.5 3.5E+02 0.0075 25.5 9.1 45 168-213 61-105 (244)
148 COG4227 Antirestriction protei 31.9 26 0.00057 33.2 1.5 22 274-295 199-220 (316)
149 COG5504 Predicted Zn-dependent 31.9 32 0.0007 32.4 2.1 30 259-291 124-153 (280)
150 PF09471 Peptidase_M64: IgA Pe 31.2 28 0.0006 33.1 1.6 15 275-289 213-227 (264)
151 PF11391 DUF2798: Protein of u 30.9 1.6E+02 0.0036 21.0 5.3 36 137-176 19-54 (60)
152 cd06162 S2P-M50_PDZ_SREBP Ster 30.8 30 0.00064 33.2 1.7 16 277-292 134-149 (277)
153 PF02687 FtsX: FtsX-like perme 30.2 2.6E+02 0.0056 21.6 10.3 45 131-175 29-74 (121)
154 PF10460 Peptidase_M30: Peptid 29.2 42 0.0009 33.5 2.5 19 274-292 135-153 (366)
155 cd04275 ZnMc_pappalysin_like Z 28.9 8.9 0.00019 35.6 -2.1 37 261-297 119-157 (225)
156 COG3305 Predicted membrane pro 28.3 3.3E+02 0.0071 23.1 7.2 28 106-133 90-117 (152)
157 cd03082 TRX_Fd_NuoE_W_FDH_beta 27.5 1.6E+02 0.0035 21.9 5.0 31 252-283 39-70 (72)
158 PF02128 Peptidase_M36: Fungal 27.2 17 0.00038 36.2 -0.5 59 237-296 138-203 (378)
159 COG3930 Uncharacterized protei 26.8 82 0.0018 31.2 3.9 75 207-288 178-256 (434)
160 cd06457 M3A_MIP Peptidase M3 m 26.7 44 0.00095 34.3 2.3 21 272-294 244-264 (458)
161 PRK05702 flhB flagellar biosyn 26.0 6.6E+02 0.014 25.0 13.5 27 216-242 237-270 (359)
162 PRK00523 hypothetical protein; 25.6 89 0.0019 23.7 3.1 13 222-234 44-56 (72)
163 smart00793 AgrB Accessory gene 25.6 3.1E+02 0.0067 24.3 7.3 24 204-227 118-141 (184)
164 cd04283 ZnMc_hatching_enzyme Z 25.5 32 0.0007 30.8 0.9 12 279-290 78-89 (182)
165 PF14521 Aspzincin_M35: Lysine 25.4 1.2E+02 0.0025 26.0 4.4 42 248-289 65-107 (148)
166 cd04281 ZnMc_BMP1_TLD Zinc-dep 24.9 33 0.00072 31.2 0.9 12 279-290 88-99 (200)
167 PF01400 Astacin: Astacin (Pep 24.8 43 0.00093 30.0 1.6 62 217-290 22-91 (191)
168 cd06158 S2P-M50_like_1 Unchara 24.2 47 0.001 29.5 1.7 13 278-290 9-21 (181)
169 PRK11767 SpoVR family protein; 24.2 91 0.002 32.3 3.9 77 217-297 18-131 (498)
170 PRK09110 flagellar motor prote 24.1 6.4E+02 0.014 24.2 11.6 22 272-294 138-159 (283)
171 KOG1046 Puromycin-sensitive am 23.9 44 0.00096 37.3 1.8 21 275-295 321-341 (882)
172 PF06836 DUF1240: Protein of u 23.9 47 0.001 26.5 1.5 26 110-135 44-69 (95)
173 PRK00523 hypothetical protein; 23.6 2.4E+02 0.0052 21.4 5.1 30 8-37 10-39 (72)
174 PF10777 YlaC: Inner membrane 23.2 5E+02 0.011 22.6 9.1 24 217-240 126-150 (155)
175 PRK01100 putative accessory ge 23.2 3.8E+02 0.0083 24.3 7.6 22 204-225 130-151 (210)
176 PRK10911 oligopeptidase A; Pro 23.0 54 0.0012 35.5 2.2 21 274-295 460-480 (680)
177 PHA02564 V virion protein; Pro 22.9 1.2E+02 0.0027 26.0 3.9 29 207-235 72-100 (141)
178 COG4149 ModC ABC-type molybdat 22.7 3.5E+02 0.0077 25.1 7.0 118 106-237 6-134 (225)
179 TIGR01689 EcbF-BcbF capsule bi 22.7 1.6E+02 0.0034 24.7 4.5 62 218-288 64-125 (126)
180 cd06461 M2_ACE Peptidase famil 22.1 98 0.0021 32.1 3.8 66 218-290 185-259 (477)
181 PF05548 Peptidase_M11: Gameto 22.0 43 0.00094 32.6 1.1 16 280-295 152-168 (314)
182 COG1176 PotB ABC-type spermidi 21.9 4.7E+02 0.01 25.2 8.2 29 104-132 67-95 (287)
183 PF15639 Tox-MPTase3: Metallop 21.7 65 0.0014 27.2 1.9 37 258-294 71-116 (135)
184 TIGR00054 RIP metalloprotease 21.4 46 0.00099 33.7 1.2 11 280-290 16-26 (420)
185 PRK12482 flagellar motor prote 21.4 7.4E+02 0.016 23.9 15.1 30 272-302 138-167 (287)
186 KOG2765 Predicted membrane pro 21.3 2.9E+02 0.0063 27.8 6.6 50 106-155 277-336 (416)
187 cd04280 ZnMc_astacin_like Zinc 21.0 42 0.00092 29.7 0.8 12 279-290 75-86 (180)
188 PRK01844 hypothetical protein; 20.9 2.9E+02 0.0062 21.0 5.0 29 9-37 10-38 (72)
189 COG3125 CyoD Heme/copper-type 20.7 4.8E+02 0.01 21.5 6.7 15 149-163 17-31 (111)
190 KOG3714 Meprin A metalloprotea 20.5 44 0.00095 33.9 0.8 13 279-291 160-172 (411)
191 PF05182 Fip1: Fip1 motif; In 20.5 58 0.0013 22.3 1.2 18 137-154 25-42 (45)
192 PF04293 SpoVR: SpoVR like pro 20.5 1.3E+02 0.0027 30.8 4.0 77 217-297 9-121 (426)
193 PF06173 DUF986: Protein of un 20.3 5E+02 0.011 22.6 7.1 107 122-242 11-123 (149)
No 1
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=100.00 E-value=1.3e-74 Score=561.87 Aligned_cols=359 Identities=50% Similarity=0.859 Sum_probs=345.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CChhhhccCCHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHh
Q 017701 3 FPYMEAVVGFMILMYFFETYLDLRQHAALKLPK-LPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTI-LMDSAILLF 80 (367)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~rq~~~~~~~~-~P~~l~~~~~~e~~~ks~~Y~~~~~~~~~~~~~~~~-~~~~~~l~~ 80 (367)
.+|+..+++++++.+.||+|++.||++++++++ +|+++.+.+|+|+++|||+|+++|.++++++...+. ...+..+++
T Consensus 6 ~~~~~~i~~f~i~~~~~~~yl~~Rq~~~~~~~~~~p~el~~~~~~et~~kar~y~~~k~~f~i~~~~~~~~~~~l~~L~~ 85 (428)
T KOG2719|consen 6 MCRKSIILFFSIFLYLFETYLTERQLKVLKRTKLVPKELGGIIDQETFKKARSYERDKSIFSIFNLLLSLVLLLLLELYL 85 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHhhcCCCHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999998875 999999999999999999999999999999999999 889999999
Q ss_pred chHHHHHhhhhhHHHHhccCCccchhHHHHHHHHHHHHHHhccccHhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHH
Q 017701 81 RILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAI 160 (367)
Q Consensus 81 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~lPf~~Y~~f~le~~~Gf~~~t~~~~~~d~~k~~~l~~ 160 (367)
|.+|++|+.++++..+. .+++++++|+.+.+.+++++++|+++|++|++|++||+||+|.+.|++|.+|+.++++
T Consensus 86 g~~~~lw~lt~~~~~~~-----~~~~~s~vF~~~~s~~~~l~~LP~~iys~fvie~~~gfnk~t~~~~~~d~lk~~~v~~ 160 (428)
T KOG2719|consen 86 GALPFLWKLTGKFLGKA-----GEIWLSLVFLLLLSIYSTLLDLPSSIYSTFVLEEKHGFNKQTLSLFIIDGLKSLLVGV 160 (428)
T ss_pred hHHHHHHHHHHHHhhhh-----hhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHhhcCCCcCcchhHHHHHHHHHHHHH
Confidence 99999999999887663 3899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCCcCChhHHHHHHHHHHHHcCCCCCcEEEE
Q 017701 161 VLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240 (367)
Q Consensus 161 vl~~~l~~~~~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~p~~i~pl~~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~ 240 (367)
+++.|+.+++.+++.++|+++.+|+|++.+++++++..++|.+|+|+++|++|++++++++.||++|++.|+|.++++|+
T Consensus 161 ~l~~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l~ti~p~~i~P~f~K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi 240 (428)
T KOG2719|consen 161 VLTIPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLLLTIYPGFIAPLFGKFTPLEEGDLKEKIERLADSVGFPLSKYRVI 240 (428)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCchHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcceEEeccCCCCEEEEchhHHh-h--CCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhc
Q 017701 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ-Q--CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRN 317 (367)
Q Consensus 241 ~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~-~--l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~~~l~~~~~~ 317 (367)
|+|+|++++|||++|+++.||||++|+++. + + ++||+.||+|||+|||+++|+.|++++.++..++.+.+++.+++
T Consensus 241 ~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~-~~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~~~~~ 319 (428)
T KOG2719|consen 241 DGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHL-NNEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFGFLYR 319 (428)
T ss_pred ecCCCCCCCCeeeeeccccceEEEehhhhhhhhcc-ccHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999993 2 4 89999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCCCC-CchHHHHH-HHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 318 STDLFRSFGFDT-QPVLIGLI-IFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 318 ~~~l~~~fG~~~-~~~~i~l~-lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
++.+|.++||.+ .|..+|++ +|..+++|++.+.++++|..||++|||||+
T Consensus 320 ~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~~~~n~~sR~fEyqAD~ 371 (428)
T KOG2719|consen 320 NPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLNFLMNLISRRFEYQADA 371 (428)
T ss_pred CcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 79999997 888999999999999999999999999996
No 2
>PRK03001 M48 family peptidase; Provisional
Probab=100.00 E-value=2.3e-33 Score=268.03 Aligned_cols=199 Identities=17% Similarity=0.269 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCCcCCh---hHHHHHHHHHH
Q 017701 151 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPE---GELREKIEKLA 227 (367)
Q Consensus 151 d~~k~~~l~~vl~~~l~~~~~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~p~~i~pl~~~~~pl~~---~~L~~~i~~l~ 227 (367)
|.+|+.++..+++++++.+.+++.+ ..+|+++|++.++++++.++++|.++.|++|+ +|+++ |++++.++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la 77 (283)
T PRK03001 2 NWVKTAMLMAAITALFIVIGGMIGG---SQGMLIALLFALGMNFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELA 77 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHH
Confidence 7889999999999999988888774 45588999999999999999999999999997 77876 69999999999
Q ss_pred HHcCCCCCcEEEEeCCCCCCCcceEEeccCCC-CEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 017701 228 SSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTL 306 (367)
Q Consensus 228 ~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~-~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~ 306 (367)
++.|+|.|++|++|+ +++|||++|.+++ ++|+++|+|++.+ |+||++||+|||+||++++|+.++++.+.+..+
T Consensus 78 ~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~ 152 (283)
T PRK03001 78 QRAGLPMPKVYLINE----DQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILISTISATMAGA 152 (283)
T ss_pred HHcCCCCCeEEEecC----CCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 999999999999996 5799999998754 5799999999999 999999999999999999999999876543221
Q ss_pred H-HHHHHHHHhcChhhhhhcCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 307 L-QFGGYTLVRNSTDLFRSFGFDTQP-VLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 307 ~-~~~l~~~~~~~~~l~~~fG~~~~~-~~i~l~lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
+ .+..+.. ++..++.++.+ ..++..++. ++.|+ ...++++++||++||+||+
T Consensus 153 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~SR~~E~~AD~ 206 (283)
T PRK03001 153 ISALANFAM------FFGGRDENGRPVNPIAGIAVA-ILAPL--AASLIQMAISRAREFEADR 206 (283)
T ss_pred HHHHHHHHH------HhcCCCccccccchHHHHHHH-HHHHH--HHHHHHHHHhHHHHHHHhH
Confidence 1 1111111 22333322111 112222222 22332 2467889999999999995
No 3
>PRK01265 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.8e-32 Score=264.06 Aligned_cols=174 Identities=24% Similarity=0.313 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhc--cCCcCC--hhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccC-CCCE
Q 017701 187 AFMFVLSLVMMTLYPVLIAPLFN--KFTPLP--EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKR 261 (367)
Q Consensus 187 ~~~~~~~~~~~~~~p~~i~pl~~--~~~pl~--~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~-~~~~ 261 (367)
++++++.++.++++|.++.|+++ +++|.+ +++|++.++++|++.|+|.|++|++|+ +.+|||++|.+ ++++
T Consensus 49 ~~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~----~~~NAfa~G~~~~~~~ 124 (324)
T PRK01265 49 IFVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADV----PFPNAFAYGSPIAGKR 124 (324)
T ss_pred HHHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecC----CCCCeEEeccCCCCCE
Confidence 34455678889999999999996 888987 789999999999999999999999997 45999999986 5799
Q ss_pred EEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCCCCchHHHHHHHHH
Q 017701 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQH 341 (367)
Q Consensus 262 Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~fG~~~~~~~i~l~lf~~ 341 (367)
|+++|++++.+ ++||++||+|||+||+||+|+.++++++.+..++.+...... +..++..+|.++.....++.++..
T Consensus 125 Ivvt~gLl~~l-~~~El~aVlAHElgHik~~d~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~l 201 (324)
T PRK01265 125 IAITLPLLKIL-NRDEIKAVAGHELGHLKHRDVELLMAIGLIPTLIYYLGYSLF--WGGMFGGGGGGRGNNGGLLFLIGI 201 (324)
T ss_pred EEEehHHHhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccccCCCccchHHHHHHH
Confidence 99999999999 999999999999999999999999988777665544332222 223444444422211122334455
Q ss_pred HHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 342 TVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 342 v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
++.++..+++++.+++||++||+||+
T Consensus 202 l~~~~~~i~~~l~~aiSR~rEy~AD~ 227 (324)
T PRK01265 202 ALMAVSFVFNLLVLSINRMREAYADV 227 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56677788899999999999999995
No 4
>PRK03982 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2.2e-32 Score=261.95 Aligned_cols=204 Identities=22% Similarity=0.223 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCCcC---ChhHHHHHHHHH
Q 017701 150 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKL 226 (367)
Q Consensus 150 ~d~~k~~~l~~vl~~~l~~~~~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~p~~i~pl~~~~~pl---~~~~L~~~i~~l 226 (367)
.|.+|+.++..+++.+++.+.+.. .|..||++++++.+++.++ .+.+|..+.|.+++.+|+ ++|++++.++++
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~p~L~~~v~~l 77 (288)
T PRK03982 2 MNQLKTGLLMALLTGLLYAIGYLL---GGSIGPIIAILLALIPNLI-SYYYSDKIVLASYNARIVSEEEAPELYRIVERL 77 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHH-HHHHhHHHHHHhcCCEECChhhhHHHHHHHHHH
Confidence 578899999888887777666533 3678888888888888777 556777888999999998 467899999999
Q ss_pred HHHcCCCCCcEEEEeCCCCCCCcceEEeccCC-CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 017701 227 ASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLT 305 (367)
Q Consensus 227 ~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~ 305 (367)
|++.|+|.+++|++|+ +.+|||++|.++ ++.|+++|+|++.+ |+||++||+|||+||++++|+.+++..+.+..
T Consensus 78 a~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~ 152 (288)
T PRK03982 78 AERANIPKPKVAIVPT----QTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDTLIQTIAATLAG 152 (288)
T ss_pred HHHcCCCCCeEEEEeC----CCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999986 579999999865 45678999999999 99999999999999999999999988866432
Q ss_pred HHHHHHHHHHhcChhhhhhcCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 306 LLQFGGYTLVRNSTDLFRSFGFDT--QPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 306 ~~~~~l~~~~~~~~~l~~~fG~~~--~~~~i~l~lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
.+. ++...+ ....++..+|.+. .+..++.+++. ++.|+ ...++++++||++||+||+
T Consensus 153 ~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~l~~~~~SR~~E~~AD~ 211 (288)
T PRK03982 153 AIM-YLAQWL-SWGLWFGGGGRDDRNGGNPIGSLLLI-ILAPI--AATLIQFAISRQREFSADE 211 (288)
T ss_pred HHH-HHHHHH-HHHHHhcccCccccccchHHHHHHHH-HHHHH--HHHHHHHHHhHHHHHHHhH
Confidence 222 121111 1123444455432 13334444333 23333 2478889999999999995
No 5
>PRK03072 heat shock protein HtpX; Provisional
Probab=99.96 E-value=4.3e-28 Score=231.90 Aligned_cols=200 Identities=17% Similarity=0.174 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhc--cCCcCChhHHHHHHHHHHH
Q 017701 151 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLAS 228 (367)
Q Consensus 151 d~~k~~~l~~vl~~~l~~~~~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~p~~i~pl~~--~~~pl~~~~L~~~i~~l~~ 228 (367)
+.+++.++-.++.+.++.+. |++. ..-.+++.++.+++.++.++..|.++....+ ..+|.++|+|++.++++|+
T Consensus 6 ~~~~t~~l~~~~~~~~~~~g-~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la~ 81 (288)
T PRK03072 6 NGLKTALLLGGMSALIVFIG-ALFG---RTGLGIAVLIAVGMNAYVYWNSDKLALRAMHAQPVSEVQAPAMYRIVRELST 81 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCEECChhhhHHHHHHHHHHHH
Confidence 34555555444444333332 2332 2233444556666777888888887776653 4577788999999999999
Q ss_pred HcCCCCCcEEEEeCCCCCCCcceEEeccCC-CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 017701 229 SLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLL 307 (367)
Q Consensus 229 ~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~ 307 (367)
+.|+|.|++|++|+ +.+|||++|..+ +..|++++++++.+ |+||++||+|||+||++++|+.++.+.+.+..++
T Consensus 82 ~~g~p~p~vyv~~~----~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~i 156 (288)
T PRK03072 82 AARQPMPRLYISPT----AAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHVYNRDILISSVAGALASVI 156 (288)
T ss_pred HcCCCCCCEEEecC----CCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999995 579999999643 44699999999999 9999999999999999999999999877665433
Q ss_pred HHHHHHHHhcChhhhhhcCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 308 QFGGYTLVRNSTDLFRSFGFDT---QPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 308 ~~~l~~~~~~~~~l~~~fG~~~---~~~~i~l~lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
.+.. . . ..++..+|.+. .+..+++.++. ++.|+ ...++++++||++||+||+
T Consensus 157 ~~l~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~~~~~~~~~SR~rE~~AD~ 211 (288)
T PRK03072 157 TYLA-N-M---AMFAGMFGGRRDNDGPNPLALLLVS-LLGPI--AATVIQLAISRSREYQADE 211 (288)
T ss_pred HHHH-H-H---HHHHHHhccccccccchHHHHHHHH-HHHHH--HHHHHHHHHHhHHHHHHhH
Confidence 3211 1 1 11233344321 12234433333 23332 3578889999999999995
No 6
>PRK02391 heat shock protein HtpX; Provisional
Probab=99.96 E-value=6e-28 Score=231.45 Aligned_cols=174 Identities=21% Similarity=0.134 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhc--cCCcCChhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCC-CC
Q 017701 184 YLWAFMFVLSLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NK 260 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~~i~pl~~--~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~~ 260 (367)
.+.++++++.++.++..|.++....+ +.+|.++|++++.++++|++.|+|.|++|++|+ +++|||++|.++ ++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~----~~~NAfa~G~~~~~~ 116 (296)
T PRK02391 41 LIVVIAGGFLLAQYFFSDKLALWSMGARIVSEDEYPELHAMVERLCALADLPKPRVAVADS----DVPNAFATGRSPKNA 116 (296)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeC----CCCceEEecCCCCCc
Confidence 34455666677788888888776553 667888999999999999999999999999995 689999999864 56
Q ss_pred EEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCCCCchHHHHHHHH
Q 017701 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQ 340 (367)
Q Consensus 261 ~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~fG~~~~~~~i~l~lf~ 340 (367)
.|++++++++.+ |+||++||+|||+||++++|+.++.+.+.+..+..+. .... ..+..+|..+.....+..++.
T Consensus 117 ~V~vt~gLl~~L-~~~El~aVlaHElgHi~~~di~~~~i~~~~~~~~~~l-~~~~----~~~~~~~~~~~~~~~~~~~~~ 190 (296)
T PRK02391 117 VVCVTTGLMRRL-DPDELEAVLAHELSHVKNRDVAVMTIASFLSTIAFLI-VRWG----FYFGGFGGRGGGGGGGGILVV 190 (296)
T ss_pred EEEecHHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHH----HHhccccCCCCcccchHHHHH
Confidence 788999999999 9999999999999999999999998877665543321 1111 111222211111001111111
Q ss_pred HHHH-HHHHHHHHHHHHHchHhHHhcCC
Q 017701 341 HTVI-PIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 341 ~v~~-p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
.++. ....+..++.+++||++||+||+
T Consensus 191 ~~~~~~~~~~~~~l~~~~SR~rE~~AD~ 218 (296)
T PRK02391 191 ILVSLVVWAISFLLIRALSRYREFAADR 218 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2222 22334577899999999999995
No 7
>PRK02870 heat shock protein HtpX; Provisional
Probab=99.96 E-value=2.6e-27 Score=229.69 Aligned_cols=169 Identities=18% Similarity=0.297 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhhc-------cCCcCChhHHHHHHHHHHHHcCCC-CCcEEEEeCCCCCCCcceEEecc
Q 017701 185 LWAFMFVLSLVMMTLYPVLIAPLFN-------KFTPLPEGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGF 256 (367)
Q Consensus 185 ~~~~~~~~~~~~~~~~p~~i~pl~~-------~~~pl~~~~L~~~i~~l~~~~g~~-~~~i~v~~~s~rs~~~NA~~~G~ 256 (367)
+.++.++..++.++..+.++....+ +..|.+++++++.++++|++.|+| .|++|++|+ +++|||++|.
T Consensus 76 ~~~~~~~~~~~~y~~~~~~~l~~~~a~~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~----~~~NAFA~G~ 151 (336)
T PRK02870 76 MSLVAVISILVTFQNFDKIMLSGTEYKEITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDA----PYMNAFASGY 151 (336)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHcCCEEcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcC----CCCceEEecC
Confidence 3345555667777888877766543 456666889999999999999999 799999996 5799999998
Q ss_pred C-CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCCC----Cc
Q 017701 257 F-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDT----QP 331 (367)
Q Consensus 257 ~-~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~fG~~~----~~ 331 (367)
+ ++++|+++|++++.+ ++||++||+|||+||++|+|+.+++..+.+..++.+. ... .++..+|... .+
T Consensus 152 ~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~-~~~-----~~~~~~g~~~~~~~~~ 224 (336)
T PRK02870 152 SEKSAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIV-ADF-----LFYSFMGNRRNSGANR 224 (336)
T ss_pred CCCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-HHH-----HHHHHhcCCcccccch
Confidence 6 478999999999999 9999999999999999999998887776654432221 111 1222233211 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 332 VLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 332 ~~i~l~lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
..++++++..+ .|+ +..++++++||++||+||+
T Consensus 225 ~~~~~l~l~~~-~~~--~~~ll~~~iSR~rEy~AD~ 257 (336)
T PRK02870 225 ARMIILILRYV-LPI--LTVLLMLFLSRTREYMADA 257 (336)
T ss_pred hHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHhH
Confidence 12333333222 232 3467889999999999995
No 8
>PRK04897 heat shock protein HtpX; Provisional
Probab=99.96 E-value=1.9e-27 Score=228.64 Aligned_cols=175 Identities=19% Similarity=0.275 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhccCCcC---ChhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCC-
Q 017701 183 IYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK- 258 (367)
Q Consensus 183 l~~~~~~~~~~~~~~~~~p~~i~pl~~~~~pl---~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~- 258 (367)
+++.++++...++.++..|.++.. .++.+|+ ++|++++.++++|++.|+|.|++|++|+ +.+|||++|.++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~v~~~~~p~L~~~v~~la~~~gip~p~v~v~~~----~~~NAfa~G~~~~ 118 (298)
T PRK04897 44 IIALIIGVIYALIMIFQSTNVVMS-MNHAREVTEEEAPELWHIVEDMAMVAQIPMPRVFIIDD----PSPNAFATGSSPK 118 (298)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-hCCCEECChhhhHHHHHHHHHHHHHcCCCCCcEEEecC----CCCceEEeccCCC
Confidence 334445555666777777766554 4457777 5789999999999999999999999986 579999999875
Q ss_pred CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCC---C-CCc---
Q 017701 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGF---D-TQP--- 331 (367)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~fG~---~-~~~--- 331 (367)
++.|++++++++.+ ++||++||+|||+||++|+|+.++++...+..++.+ +...... ..++..+|. + +.+
T Consensus 119 ~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~~~~-l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 195 (298)
T PRK04897 119 NAAVAVTTGLLAIM-NREELEGVIGHEISHIRNYDIRLSTIAVALASAITL-LSDIAGR-MMWWGGGSRRRDDDRDGGGL 195 (298)
T ss_pred CcEEEeehHHHhhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHH-HHHhcccccccccccccchh
Confidence 45799999999999 999999999999999999999999887665444332 2222211 111221111 0 111
Q ss_pred -hHHHH-HHHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 332 -VLIGL-IIFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 332 -~~i~l-~lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
....+ .++..++.|+. .+++++++||++||+||+
T Consensus 196 ~~~~~~~~l~~~i~~~~~--~~ll~~~~SR~rE~~AD~ 231 (298)
T PRK04897 196 QIILLIVSLLLLILAPLA--ATLIQLAISRQREYLADA 231 (298)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHH
Confidence 11111 12223344542 477889999999999995
No 9
>PRK01345 heat shock protein HtpX; Provisional
Probab=99.96 E-value=4.6e-27 Score=227.37 Aligned_cols=172 Identities=19% Similarity=0.293 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhcc--CCcCChhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCC-C
Q 017701 183 IYLWAFMFVLSLVMMTLYPVLIAPLFNK--FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-N 259 (367)
Q Consensus 183 l~~~~~~~~~~~~~~~~~p~~i~pl~~~--~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~ 259 (367)
+...++.+++.++.++..|.++.+.++. .+|.++|++++.++++|++.|+|.+++|++|+ +++|||++|.++ +
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~----~~~NAFa~G~~~~~ 106 (317)
T PRK01345 31 MIALVIAAGMNLFSYWNSDKMVLRMYGAQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDN----PQPNAFATGRNPEN 106 (317)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcC----CCcceEEecCCCCC
Confidence 3345566667888889999999998875 77888899999999999999999999999995 679999999854 6
Q ss_pred CEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH-HHHHHHHhcChhhhhhcCCCCCc-hHHHHH
Q 017701 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQ-FGGYTLVRNSTDLFRSFGFDTQP-VLIGLI 337 (367)
Q Consensus 260 ~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~fG~~~~~-~~i~l~ 337 (367)
++|+++++|++.+ ++||++||+|||+||++++|+.++.+.+.+...+. +..+..+++... . -.+.+ ..++.+
T Consensus 107 ~~V~vt~gLL~~L-~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~--~---~~~~~~~~i~~~ 180 (317)
T PRK01345 107 AAVAATTGLLQRL-SPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFFGGNR--E---NNNGPLGLVGTL 180 (317)
T ss_pred eEEEechHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c---cccchHHHHHHH
Confidence 6899999999999 99999999999999999999999887765432221 111122222100 0 00112 123322
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 338 IFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 338 lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
+..++.|+. ..++++.+||++||+||+
T Consensus 181 -~~~~~~~~~--~~l~~~~~SR~rE~~AD~ 207 (317)
T PRK01345 181 -AAMIVAPLA--AMLVQMAISRTREYAADR 207 (317)
T ss_pred -HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 223344543 347788999999999995
No 10
>PRK05457 heat shock protein HtpX; Provisional
Probab=99.94 E-value=2.5e-25 Score=212.28 Aligned_cols=167 Identities=20% Similarity=0.212 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhhhHHHHHhhhccCCcC----Chh--HHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCC-C
Q 017701 188 FMFVLSLVMMTLYPVLIAPLFNKFTPL----PEG--ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN-K 260 (367)
Q Consensus 188 ~~~~~~~~~~~~~p~~i~pl~~~~~pl----~~~--~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~-~ 260 (367)
+.++.+++.++..|.++....+ .+++ +++ ++++.++++|++.|+|.|++|++|+ +++|||++|.+++ +
T Consensus 43 ~~~~~~~~~~~~~~~i~~~~~~-a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~~----~~~NAfa~G~~~~~~ 117 (284)
T PRK05457 43 FGFGGSFISLLMSKWMAKRSTG-AEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYHS----PEINAFATGASKNNS 117 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEeC----CCceEEEecCCCCCe
Confidence 3344456677778877765553 4443 333 4999999999999999999999995 6799999998654 5
Q ss_pred EEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHH-HHHHHHH--HHHHHhcChhhhhhcCCCCCc---hHH
Q 017701 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV-LTLLQFG--GYTLVRNSTDLFRSFGFDTQP---VLI 334 (367)
Q Consensus 261 ~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~-~~~~~~~--l~~~~~~~~~l~~~fG~~~~~---~~i 334 (367)
.|++++++++.+ |+||++||+|||+||++++|+.++.+...+ ..++.+. ++..+... ... |-.+.+ ..+
T Consensus 118 ~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~ 192 (284)
T PRK05457 118 LVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTFVIFLSRIIAQIVDR--FVS--GNEEGNGIGYFI 192 (284)
T ss_pred EEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc--cCcccccHHHHH
Confidence 578999999999 999999999999999999999998665443 3332222 11212211 000 101111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 335 GLIIFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 335 ~l~lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
+..++. .....+.+++.+++||++||+||+
T Consensus 193 ~~~l~~---~~~~~~~~ll~~~~SR~rEy~AD~ 222 (284)
T PRK05457 193 VSIVLE---IVFGILASIIVMWFSRHREFRADA 222 (284)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 111211 123356788999999999999995
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.90 E-value=2.7e-25 Score=204.42 Aligned_cols=160 Identities=38% Similarity=0.592 Sum_probs=105.3
Q ss_pred HHHHHHhhhHHHHHhhhccCCcCChhHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHH
Q 017701 192 LSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSL--KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI 269 (367)
Q Consensus 192 ~~~~~~~~~p~~i~pl~~~~~pl~~~~L~~~i~~l~~~~--g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll 269 (367)
.+.++..++|..+++++++.+|.+++++++.+++++++. +.|.++++++++ +..|||++|.+++++|+++++++
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~----~~~NA~~~g~~~~~~I~v~~~ll 81 (226)
T PF01435_consen 6 VSLLLAFIGPPLIAPLFNKFTPLEDPELRRIVEELARRAGLGIPPPRVYVIDS----PSPNAFATGGGPRKRIVVTSGLL 81 (226)
T ss_dssp TTSTTGHHCCCCHCCHCTC--B-HHHHHHHHHHHHHHHHHCTSS--EEEEE------SSEEEEEETTTC--EEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcC----CCCcEEEEccCCCcEEEEeChhh
Confidence 344455677778899999999999999999999999999 888889999996 45999999998889999999999
Q ss_pred hhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 017701 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHL 349 (367)
Q Consensus 270 ~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~fG~~~~~~~i~l~lf~~v~~p~~~~ 349 (367)
+.+ |+||++||+|||+||++++|..+++....+..++...+...+.........+|+.... +.. +...
T Consensus 82 ~~~-~~~el~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~ 149 (226)
T PF01435_consen 82 ESL-SEDELAAVLAHELGHIKHRHILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDIL---GIL--------IAFL 149 (226)
T ss_dssp HHS-SHHHHHHHHHHHHHHHHTTHCCCCCCHHH-HHHHHHHHHT-----HHHHHHHH---------------------HH
T ss_pred hcc-cHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc---hhh--------HHHH
Confidence 999 9999999999999999999999886666655544444433333333333333321110 000 0033
Q ss_pred HHHHHHHHchHhHHhcCC
Q 017701 350 VSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 350 ~~~~~~~~SR~~E~~AD~ 367 (367)
..++.+.+||++|++||+
T Consensus 150 ~~~~~~~~sr~~E~~AD~ 167 (226)
T PF01435_consen 150 FQLLTNAFSRRQEYEADR 167 (226)
T ss_dssp STT------HHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHH
Confidence 466789999999999994
No 12
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-20 Score=179.59 Aligned_cols=168 Identities=24% Similarity=0.293 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhhcc--CCcCC------hhHHHHHHHHHHHHcCCC-CCcEEEEeCCCCCCCcceEEec
Q 017701 185 LWAFMFVLSLVMMTLYPVLIAPLFNK--FTPLP------EGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYG 255 (367)
Q Consensus 185 ~~~~~~~~~~~~~~~~p~~i~pl~~~--~~pl~------~~~L~~~i~~l~~~~g~~-~~~i~v~~~s~rs~~~NA~~~G 255 (367)
...+.+...++.++..+.+.....+. ..+.. .......+++++++.+.+ .+++++.++ +.+|||++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~v~i~~~----~~~NAFa~g 134 (302)
T COG0501 59 ALLLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILET----PQPNAFALG 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhceeecccccccchHHHHHHHHHHHHHHHHCCCCCCCeeEEecC----CCccceecC
Confidence 34445555666667777666655543 22211 234455899999999998 789999994 789999999
Q ss_pred cC-CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCCCCchHH
Q 017701 256 FF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLI 334 (367)
Q Consensus 256 ~~-~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~fG~~~~~~~i 334 (367)
.+ ++++|+++++|++.+ |+||++||+|||+||++++|..++.............+.......... + + .
T Consensus 135 ~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~----~ 203 (302)
T COG0501 135 GGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATLALAAGLL----G--E----A 203 (302)
T ss_pred CCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh----c--c----h
Confidence 75 679999999999999 999999999999999999999996555444333333332322221111 1 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHhHHhcCC
Q 017701 335 GLIIFQHTVIPIQHLVSFGLNLVSRSFEFQVTF 367 (367)
Q Consensus 335 ~l~lf~~v~~p~~~~~~~~~~~~SR~~E~~AD~ 367 (367)
.+............+..++.+.+||++|++||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~ 236 (302)
T COG0501 204 ALALLLLLLLLALFLATLLVLAFSRKREYEADR 236 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence 111111222333456688999999999999996
No 13
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=9.4e-12 Score=123.38 Aligned_cols=87 Identities=25% Similarity=0.367 Sum_probs=71.9
Q ss_pred ccCCcCChhHHHHHHHHHHHH----cCCCC--CcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHH
Q 017701 209 NKFTPLPEGELREKIEKLASS----LKFPL--KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVI 282 (367)
Q Consensus 209 ~~~~pl~~~~L~~~i~~l~~~----~g~~~--~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVl 282 (367)
+....++|+++.+.|+++..+ .|.+. -+++++++ +..|||++ .+++|+|+.|++-..+||+|+.+||
T Consensus 62 ~~~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d----~~iNAFA~---~Gg~v~vntGLll~ae~esElagVi 134 (484)
T COG4783 62 GSVPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVND----DSINAFAT---PGGYVVVNTGLLLTAENESELAGVI 134 (484)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC----Cccchhhc---CCceEEEehHHHHhcCCHHHHHHHH
Confidence 334566899999988877654 55543 26778875 67999999 6789999999999999999999999
Q ss_pred HHHHHHhhhccHHHHHHHHH
Q 017701 283 AHELGHWKLNHTMYSFIAVQ 302 (367)
Q Consensus 283 aHElgH~k~~h~~~~~~~~~ 302 (367)
|||+||+..+|..+.+=...
T Consensus 135 AHEigHv~qrH~aR~~e~~~ 154 (484)
T COG4783 135 AHEIGHVAQRHLARSMEQQQ 154 (484)
T ss_pred HHHHHHHhhhhHHHHHHHHh
Confidence 99999999999999886633
No 14
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.34 E-value=3.4e-11 Score=116.01 Aligned_cols=91 Identities=26% Similarity=0.470 Sum_probs=77.2
Q ss_pred hhccCCcCChhHHHHHHHHHHHHcCCCCC-cEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHH
Q 017701 207 LFNKFTPLPEGELREKIEKLASSLKFPLK-KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHE 285 (367)
Q Consensus 207 l~~~~~pl~~~~L~~~i~~l~~~~g~~~~-~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHE 285 (367)
+.++.++.+|++..+.+++++++.|++.+ ++++.+ ....++++|+ .+++|++++++.+.+ ++||+++|++||
T Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~s~-----~i~sP~~~G~-~~p~I~lP~~~~~~~-~~~el~~il~HE 203 (299)
T PF05569_consen 131 LLRKARPVEDEELQALLEECKEELGIKRPIRIRVSS-----GISSPFVFGF-LRPVIVLPESLLEDL-SEEELRAILLHE 203 (299)
T ss_pred HHHhccccCcHHHHHHHHHHHHHhCCCCceEEEEcC-----CCCCCeeecC-cceEEEecCcccccc-CHHHHHHHHHHH
Confidence 46778899999999999999999998743 444443 3557899998 479999999999999 999999999999
Q ss_pred HHHhhhccHHHHHHHHHHH
Q 017701 286 LGHWKLNHTMYSFIAVQVL 304 (367)
Q Consensus 286 lgH~k~~h~~~~~~~~~~~ 304 (367)
+.|+|++|.+...+...+.
T Consensus 204 l~Hikr~D~~~~~l~~l~~ 222 (299)
T PF05569_consen 204 LAHIKRRDLLWKLLAELLC 222 (299)
T ss_pred HHHHHCCChHHHHHHHHHH
Confidence 9999999999998776553
No 15
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.9e-10 Score=108.76 Aligned_cols=73 Identities=23% Similarity=0.498 Sum_probs=62.1
Q ss_pred CcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Q 017701 235 KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTL 314 (367)
Q Consensus 235 ~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~~~~~~~~~l~~~ 314 (367)
-+|.|+|+ +.+|||+. ++++|++++++++.++++||+++|+|||+||...+|..-.+....+..++.+.++.+
T Consensus 239 WeihVVnd----PipNAFvL---PgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVarH~AEki~k~~~~siLgLvlyt~ 311 (424)
T KOG2661|consen 239 WEIHVVND----PIPNAFVL---PGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVARHAAEKIGKVHLLSILGLVLYTM 311 (424)
T ss_pred eEEEEecC----CCCceeec---cCCeEEEEechhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 37889986 67999998 789999999999999999999999999999999999999887766655555544443
No 16
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.04 E-value=1.6e-09 Score=103.11 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=67.2
Q ss_pred CChhHHHHHHHHHHHHcCCC---C---CcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHH
Q 017701 214 LPEGELREKIEKLASSLKFP---L---KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (367)
Q Consensus 214 l~~~~L~~~i~~l~~~~g~~---~---~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElg 287 (367)
..|+.+.+.+.++..++-.. + -++-++|+ +..|||+. +++.++++.+|+....+..|++||++||+|
T Consensus 61 Y~D~Kler~Vari~g~lt~~S~~p~q~YriTilnS----P~INAFAL---PGGYlYitRGLlAland~sEvAAVl~HEmg 133 (479)
T COG4784 61 YRDPKLERMVARIVGALTAVSENPQQTYRITILNS----PNINAFAL---PGGYLYITRGLLALANDSSEVAAVLAHEMG 133 (479)
T ss_pred cCCHHHHHHHHHHHhHhhhhccCCCceEEEEEecC----CCcccccc---CCceEEEehhHHHHcCCHHHHHHHHHhhhh
Confidence 34778888887777664331 2 27888884 78999998 789999999999998889999999999999
Q ss_pred HhhhccHHHHHHHHHH
Q 017701 288 HWKLNHTMYSFIAVQV 303 (367)
Q Consensus 288 H~k~~h~~~~~~~~~~ 303 (367)
|+..+|...+.-....
T Consensus 134 HVtAnHgi~rQ~~e~a 149 (479)
T COG4784 134 HVTANHGIQRQQREAA 149 (479)
T ss_pred heecchhHHHHHHHHH
Confidence 9999998877655443
No 17
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=98.82 E-value=5.5e-08 Score=92.48 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHH
Q 017701 216 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~ 295 (367)
+.|.++.++++.++... +++.+-. | +...+..++|.+ +++|++++...+++ ++||++.|++||++|.|++|..
T Consensus 135 e~d~~~~~~~~~~~~~~--k~i~ir~-s--~~i~~P~v~gl~-kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i 207 (337)
T COG4219 135 EVDKRKIVTILKNHQYK--KHILIRK-S--KAIDGPMVFGLV-KPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAI 207 (337)
T ss_pred cccHHHHHHHHHHhhhc--cCeeEee-c--ccCCCceeeccC-cceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHH
Confidence 45667777777666544 4544433 3 256788999985 78999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017701 296 YSFIAVQVLTLLQ 308 (367)
Q Consensus 296 ~~~~~~~~~~~~~ 308 (367)
.+.+...++.+..
T Consensus 208 ~n~i~~~~~~l~W 220 (337)
T COG4219 208 INLIVVVLGVLFW 220 (337)
T ss_pred HHHHHHHHhHHhh
Confidence 9988766655443
No 18
>PRK04351 hypothetical protein; Provisional
Probab=96.99 E-value=0.0034 Score=54.48 Aligned_cols=71 Identities=21% Similarity=0.459 Sum_probs=51.5
Q ss_pred CChhHHHHHHHHHHHH-cCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHh
Q 017701 214 LPEGELREKIEKLASS-LKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (367)
Q Consensus 214 l~~~~L~~~i~~l~~~-~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~ 289 (367)
+++.||.+.+++++++ .+-|.+.-...+..-+ ...-++.. ....|-++..+++.. ++|++..||+||+.|+
T Consensus 1 ~~~~~l~~l~~~~s~~~F~~~f~~~v~~n~Rlr-ttgG~~~l---~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 1 MTNQELQRLVEEISLEYFGKPFRHQAYFNKRLR-TTGGRYLL---KDHHIEFNPKMLEEY-GLEELIGIIKHELCHY 72 (149)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEeccch-hhhheeec---CCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHH
Confidence 3578999999999976 4555544333443222 12233322 568999999999988 9999999999999998
No 19
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=96.97 E-value=0.0016 Score=58.94 Aligned_cols=72 Identities=26% Similarity=0.307 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccC-CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccH
Q 017701 216 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~ 294 (367)
...+.+.++..+++.|++++++.+-+... .+|.+ .+++|.++..|+. + +++-++.|+.||++|.++.+.
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~i~ir~~ks--------rWGsc~~~~~I~ln~~L~~-~-P~~~idYVvvHEL~Hl~~~nH 180 (205)
T PF01863_consen 111 KEYLPERLKKYAKKLGLPPPKIKIRDMKS--------RWGSCSSKGNITLNWRLVM-A-PPEVIDYVVVHELCHLRHPNH 180 (205)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEEeehhh--------ccccCCCCCcEEeeccccc-C-CccHHHHHHHHHHHHhccCCC
Confidence 35677788888999999999998877532 25654 5679999999885 6 899999999999999986654
Q ss_pred HHH
Q 017701 295 MYS 297 (367)
Q Consensus 295 ~~~ 297 (367)
-+.
T Consensus 181 s~~ 183 (205)
T PF01863_consen 181 SKR 183 (205)
T ss_pred CHH
Confidence 443
No 20
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=96.85 E-value=0.0031 Score=58.36 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccC-CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHH
Q 017701 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~ 295 (367)
.++...++..+++.|.+...+.+-+.++ ..|.+ ..+.|.+..-+. .. +++.+..|++||++|.+..+.-
T Consensus 123 ~~l~~~~~~~~~~l~~~~~~~~ik~~k~--------~WGScs~~~~i~~~~~l~-~~-p~~~i~YVvvHELaHLke~nHs 192 (223)
T COG1451 123 EILEIRLKEYAKKLGVPPRAIKLKNMKR--------RWGSCSKAGEIRFNWRLV-MA-PEEVIDYVVVHELAHLKEKNHS 192 (223)
T ss_pred HHHHHHHHHHHHHhCCCccceeeeeccc--------eeeeecCCCcEEeehhhh-cC-CHHHHHHHHHHHHHHHhhhhcc
Confidence 4566677788888999888787776544 35544 445555555544 56 8999999999999999988754
Q ss_pred HHH
Q 017701 296 YSF 298 (367)
Q Consensus 296 ~~~ 298 (367)
+.+
T Consensus 193 ~~F 195 (223)
T COG1451 193 KRF 195 (223)
T ss_pred HHH
Confidence 543
No 21
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=95.94 E-value=0.023 Score=54.64 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCCCCcceEE-ec---cCCCCEEEEchhHHhhCC------CHHHHHHHHHHHH
Q 017701 219 LREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYM-YG---FFKNKRIVLYDTLIQQCK------NDEEIVAVIAHEL 286 (367)
Q Consensus 219 L~~~i~~l~~~~g~~--~~~i~v~~~s~rs~~~NA~~-~G---~~~~~~Ivl~~~Ll~~l~------~~~El~aVlaHEl 286 (367)
+.+...+..++.|.+ +|++.+.+++.+|..-+|-. +| ++..++|++..+.++.|+ .+--..+|||||.
T Consensus 99 le~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEy 178 (292)
T PF04228_consen 99 LEDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEY 178 (292)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 334445555667765 57887777666554443321 12 245789999977665551 1334577999999
Q ss_pred HHhhhccH
Q 017701 287 GHWKLNHT 294 (367)
Q Consensus 287 gH~k~~h~ 294 (367)
||...+..
T Consensus 179 GHHVQ~l~ 186 (292)
T PF04228_consen 179 GHHVQNLL 186 (292)
T ss_pred HHHHHHHh
Confidence 99877654
No 22
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=95.85 E-value=0.019 Score=46.54 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=28.2
Q ss_pred CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHH
Q 017701 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYS 297 (367)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~ 297 (367)
.+.|++.+. + ++++-..++|||+||+..+|....
T Consensus 28 ~~~I~in~~----~-~~~~~~f~laHELgH~~~~~~~~~ 61 (122)
T PF06114_consen 28 NPIIFINSN----L-SPERQRFTLAHELGHILLHHGDET 61 (122)
T ss_dssp TTEEEEESS----S--HHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCEEEECCC----C-CHHHHHHHHHHHHHHHHhhhcccc
Confidence 788999887 4 899999999999999999888754
No 23
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=95.59 E-value=0.92 Score=41.84 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=51.9
Q ss_pred HHHhhhccCCcCCh---hHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHH
Q 017701 203 LIAPLFNKFTPLPE---GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIV 279 (367)
Q Consensus 203 ~i~pl~~~~~pl~~---~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~ 279 (367)
.+...|+|+...++ ..=.+.-+.+.++.|+.--+|...++. -++|-| |.+|.|-++++-.+.- | =-=.
T Consensus 20 ~vk~~~~kYs~v~~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~-LtDHYd------P~~k~vrLS~~vy~~~-S-iaAv 90 (222)
T PF04298_consen 20 WVKSTFKKYSQVRSSSGMTGAEVARHILDRNGLSDVRVERVPGE-LTDHYD------PRNKVVRLSEDVYNGR-S-IAAV 90 (222)
T ss_pred HHHHHHHhhCcCCCCCCCCHHHHHHHHHHHCCCCCeeEEEeCCC-CCCCcC------CCCCEEEeCCccCCCC-C-HHHH
Confidence 44566666665542 122344556778889874455555542 234433 3578999999866543 3 3345
Q ss_pred HHHHHHHHHhhhccH
Q 017701 280 AVIAHELGHWKLNHT 294 (367)
Q Consensus 280 aVlaHElgH~k~~h~ 294 (367)
||-|||.||..+++.
T Consensus 91 aVAAHEvGHAiQ~a~ 105 (222)
T PF04298_consen 91 AVAAHEVGHAIQHAE 105 (222)
T ss_pred HHHHHHHhHHHhccc
Confidence 789999999987763
No 24
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=95.22 E-value=0.067 Score=48.43 Aligned_cols=74 Identities=24% Similarity=0.120 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEeCC--CCCCCc-ceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhcc
Q 017701 218 ELREKIEKLASSLKFPLKKLFVVDGS--TRSSHS-NAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (367)
Q Consensus 218 ~L~~~i~~l~~~~g~~~~~i~v~~~s--~rs~~~-NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h 293 (367)
.+.+.++++.+...-+.-+|++...+ .+.... .....|.+...+|.++- +-+.. +.+++.+++|||+-|..+.+
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~-~~~~l~~~iaHE~hH~~r~~ 80 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDY-SLEELPALIAHEYHHNCRYE 80 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcc-cHHHHHHHHHHHHHHHHHHh
Confidence 45666677777666554456554432 211111 22233334456777775 44455 88999999999999997544
No 25
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=94.72 E-value=0.072 Score=45.93 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHH-cC--CCCCcEEEEeCCCCCCCcceEEeccC--CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhc
Q 017701 218 ELREKIEKLASS-LK--FPLKKLFVVDGSTRSSHSNAYMYGFF--KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 218 ~L~~~i~~l~~~-~g--~~~~~i~v~~~s~rs~~~NA~~~G~~--~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (367)
+|.+.++++-++ .+ ++.+.|..-+ ..++ ..|.. ....|.++..+++.. +++++..||.||+.|....
T Consensus 2 ~L~~~~~~~n~~~F~~~l~~~~i~w~~-r~~~------~~G~~~~~~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 2 ELTQRLEDASLRVFGRKLPHPKVVWNK-RLRK------TGGRCLLKSAEIRLNPKLLTEN-GRDRLRETLLHELCHAALY 73 (146)
T ss_pred hHHHHHHHHHHHHHCCCCCCCEEEEeh-hhhh------hhHHhhcCCCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHHH
Confidence 566666665533 33 4444444332 1111 13332 378999999999988 9999999999999999863
No 26
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=94.04 E-value=0.25 Score=42.67 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.1
Q ss_pred EEEEchhHHhhCCCHHHHHHHHHHHHHHhhhcc
Q 017701 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (367)
Q Consensus 261 ~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h 293 (367)
.|.++..+++.. +++|+..+|.||+.|....+
T Consensus 44 ~I~ls~~~~~~~-~~~~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 44 EIRLSPKLLDRN-PEEELIDTLLHEMAHAAAYV 75 (157)
T ss_pred EEEECHHHHHhh-HHHHHHHHHHHHHHHHHhhh
Confidence 899999999987 89999999999999987643
No 27
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=93.81 E-value=0.12 Score=49.69 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=37.3
Q ss_pred CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHHHHH
Q 017701 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFI 299 (367)
Q Consensus 258 ~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~ 299 (367)
.+.+|++....+..+ +.+|+.+|++||+-|+..+|..+.--
T Consensus 41 Dg~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~~ 81 (292)
T PF13203_consen 41 DGRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRGG 81 (292)
T ss_pred cCcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhcc
Confidence 345999999999999 99999999999999999999988765
No 28
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=93.57 E-value=0.17 Score=43.67 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHcCCC--CCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 216 EGELREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~--~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
+.+|++.+++...+..-+ .+++..-..- .+..-||. ....|-++..++... .+|++..|+.||++|+.
T Consensus 4 ~~~L~~~~~~as~~~~r~~~~p~~~~n~Rg--~taG~ayL----~~~~I~lNP~ll~en-~~~f~~~vV~HELaHl~ 73 (156)
T COG3091 4 NRKLQQCVEQASLKFFRKFFRPKASYNQRG--RTAGGAYL----LKSEIRLNPKLLEEN-GEDFIEQVVPHELAHLH 73 (156)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceehhhhh--hhcchhhc----cccccccCHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence 467888888877766543 3455443211 12233443 234999999999999 99999999999999974
No 29
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=92.49 E-value=0.31 Score=43.90 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccC--CCCEEEEc---hhHHhhCCCHHHHHHHHHHHHHHhhhcc
Q 017701 219 LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF--KNKRIVLY---DTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (367)
Q Consensus 219 L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~--~~~~Ivl~---~~Ll~~l~~~~El~aVlaHElgH~k~~h 293 (367)
+.+.|..++++.++.+..+..+.-. ..+ ..|.. .+..|.|- +.. +...+-++|..|+.||++|..++.
T Consensus 25 lA~~v~pIM~~~~~~V~~L~E~~P~----~~~--llG~N~N~G~~I~lrLR~~~~-~~fl~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 25 LAADVKPIMRKHGWRVGSLEEFYPN----GER--LLGLNVNKGEKICLRLRTPDD-GGFLPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred HHHHHHHHHHHcCcccCeeeccCCC----CCC--CcceecCCCcEEEEEeCCCCC-CCEeeHHHHHHHHHHHHHhcccCC
Confidence 4445556667778877766666431 111 66753 44555552 333 333388999999999999999665
Q ss_pred HHH
Q 017701 294 TMY 296 (367)
Q Consensus 294 ~~~ 296 (367)
.-.
T Consensus 98 H~~ 100 (186)
T PF08325_consen 98 HDD 100 (186)
T ss_pred ccH
Confidence 433
No 30
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=92.31 E-value=0.24 Score=38.17 Aligned_cols=61 Identities=25% Similarity=0.261 Sum_probs=40.6
Q ss_pred HHHHcCCCCCcEEEEeC---C--CCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhc
Q 017701 226 LASSLKFPLKKLFVVDG---S--TRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 226 l~~~~g~~~~~i~v~~~---s--~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (367)
+....|.+..+|-+-.+ + -++....||+.| ..|++..+-.+ . +..+=.+++|||++|+...
T Consensus 10 ~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G----~~I~f~~g~~~-~-~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 10 LERAFGADLSDVRVHTGPAASRAAAALGARAFTVG----NDIYFAPGKYN-P-DSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred HHHHhCCCccceEEEeCCchhhhhhccCCeEEEEC----CEEEEcCCCcC-C-CCCCcchhHhHHHHHHHhh
Confidence 44567777777777655 2 234566777764 68888655332 2 4455678999999998754
No 31
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=92.12 E-value=0.38 Score=44.00 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCcceEEeccCCCCEEEEchhHHhhCCC-----HHHHHHHHHHHHHHhhhccH
Q 017701 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKN-----DEEIVAVIAHELGHWKLNHT 294 (367)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~-----~~El~aVlaHElgH~k~~h~ 294 (367)
...-|++.|-+..+.|.++...++.. + .+|+.+||-||+.|.-+++.
T Consensus 61 ~~gVA~t~gd~~~~~I~~S~~~i~~~-~~~~~~~~Ei~Gvl~HE~~H~~Q~~~ 112 (205)
T PF04450_consen 61 MDGVAYTSGDDDHKEIHFSARYIAKY-PADGDVRDEIIGVLYHEMVHCWQWDG 112 (205)
T ss_pred CCeeEEEecCCCccEEEEeHHHHhhc-ccccchHHHHHHHHHHHHHHHhhcCC
Confidence 56789999866679999999999987 5 35999999999999988664
No 32
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=91.78 E-value=0.36 Score=44.20 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=25.4
Q ss_pred CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh-hcc
Q 017701 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK-LNH 293 (367)
Q Consensus 258 ~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k-~~h 293 (367)
+.+.|.|+ + ++.. +.+..+.|++|||||.. .||
T Consensus 116 P~~~I~I~-~-~~~~-~~~~~~hvi~HEiGH~IGfRH 149 (211)
T PF12388_consen 116 PYKFIQIY-G-LSNY-SVNVIEHVITHEIGHCIGFRH 149 (211)
T ss_pred CCceEEEE-e-cCCC-chhHHHHHHHHHhhhhccccc
Confidence 35788884 3 4667 88999999999999975 344
No 33
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=91.19 E-value=0.94 Score=44.25 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 017701 274 NDEEIVAVIAHELGHWKL 291 (367)
Q Consensus 274 ~~~El~aVlaHElgH~k~ 291 (367)
.+-++-+.+|||+||.+.
T Consensus 192 p~~~~P~T~~HElAHq~G 209 (318)
T PF12725_consen 192 PPYSLPFTICHELAHQLG 209 (318)
T ss_pred CcccccHHHHHHHHHHhC
Confidence 667888999999999864
No 34
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=90.45 E-value=0.85 Score=37.31 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHcCCC---CCcEEEEeCCCCCCCcceEEec----------cCCCCEEEEchhHHhhCCCHHHHHHHHH
Q 017701 217 GELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYMYG----------FFKNKRIVLYDTLIQQCKNDEEIVAVIA 283 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~---~~~i~v~~~s~rs~~~NA~~~G----------~~~~~~Ivl~~~Ll~~l~~~~El~aVla 283 (367)
++..+.++++..+.|+. ..+++++-+....+..-|-.+| +.+...|-+-..=.+.+ +-+|-.-|++
T Consensus 7 ~dve~~~~~~V~~lgLdyi~~~rv~vVys~gS~~~A~ARIwg~pki~~e~lglnP~YviEl~sekF~rL-s~~ekvKvii 85 (133)
T COG4900 7 ADVEADIKNAVVRLGLDYIFQVRVVVVYSPGSHSKAVARIWGIPKIFQEVLGLNPVYVIELLSEKFKRL-SCAEKVKVII 85 (133)
T ss_pred ccHHHHHHHHHHHhCcceeeeeeEEEEECCCCcceehhhhhcccHHHHHHhCCCCeeeeeeehhhcCCC-ChHHHHHHHH
Confidence 34556677777788876 3578877643211222333344 32334455555556778 9999999999
Q ss_pred HHHHHhh
Q 017701 284 HELGHWK 290 (367)
Q Consensus 284 HElgH~k 290 (367)
||+.|+-
T Consensus 86 HEllHIP 92 (133)
T COG4900 86 HELLHIP 92 (133)
T ss_pred HHHhcCc
Confidence 9999985
No 35
>PRK04860 hypothetical protein; Provisional
Probab=89.58 E-value=1.2 Score=39.19 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhc
Q 017701 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 258 ~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (367)
....|-++..+++.- +++++..||.||++|+.-.
T Consensus 44 ~~~~I~~Np~ll~~~-~~~~l~~~v~HEl~H~~~~ 77 (160)
T PRK04860 44 QSNEIRLNPVLLLEN-QQAFIDEVVPHELAHLLVY 77 (160)
T ss_pred hcCCeeeCHHHHhhC-cHHHHHhHHHHHHHHHHHH
Confidence 467899999999988 9999999999999998644
No 36
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=87.53 E-value=1.1 Score=41.34 Aligned_cols=30 Identities=30% Similarity=0.282 Sum_probs=23.4
Q ss_pred CEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccH
Q 017701 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (367)
Q Consensus 260 ~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~ 294 (367)
+.|++... . +++.-..++|||+||...+.-
T Consensus 59 ~~I~iN~n----~-~~~r~rFtlAHELGH~llH~~ 88 (213)
T COG2856 59 PVIYINAN----N-SLERKRFTLAHELGHALLHTD 88 (213)
T ss_pred ceEEEeCC----C-CHHHHHHHHHHHHhHHHhccc
Confidence 56777665 4 888999999999999975443
No 37
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=85.74 E-value=1.3 Score=37.24 Aligned_cols=38 Identities=34% Similarity=0.233 Sum_probs=23.1
Q ss_pred CcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 248 HSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 248 ~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
.+=|...|.| +.+|.+...--+.. +.- + |.+||+||+-
T Consensus 52 ~sya~~~g~G-~G~I~l~~~~~qgy-~~~--R-IaaHE~GHiL 89 (132)
T PF02031_consen 52 GSYASTDGLG-SGYIFLDYQQNQGY-NST--R-IAAHELGHIL 89 (132)
T ss_dssp --EEEE-SSS--EEEEEEHHHHHHS--HH--H-HHHHHHHHHH
T ss_pred CcccccCCCC-cEEEEechHHhhCC-ccc--e-eeeehhcccc
Confidence 3446666765 56899976545555 332 2 8999999974
No 38
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=85.03 E-value=0.72 Score=39.89 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=21.4
Q ss_pred CCEEEEchhHHhh----CCCHHHHHHHHHHHHHHhh
Q 017701 259 NKRIVLYDTLIQQ----CKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 259 ~~~Ivl~~~Ll~~----l~~~~El~aVlaHElgH~k 290 (367)
+..|.+.+.-... . +.++..++++||+||.-
T Consensus 72 ~g~i~~~~~~~~~~~~~~-~~~~~~~~~~HEiGHaL 106 (165)
T cd04268 72 TGEILLARVYLYSSFVEY-SGARLRNTAEHELGHAL 106 (165)
T ss_pred CccEEeeEEEEchhHHHH-HHHHHHHHHHHHHHHHh
Confidence 4566665543321 2 45689999999999975
No 39
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.60 E-value=1.2 Score=42.98 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHcCCCCC------cEEEEeCCCCCCCcceEEeccC-CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHh
Q 017701 217 GELREKIEKLASSLKFPLK------KLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~------~i~v~~~s~rs~~~NA~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~ 289 (367)
++++.+..++.+...+..- .+..+.. + ..+|+-.+--+ ..-+++.+.....+| +.+|++|.+-||+-|+
T Consensus 5 e~~~k~flr~~~es~f~l~~~~~ffa~~Li~~-k--~i~s~~~~~a~t~~~~~y~NPei~~~~-p~~~~~aLl~HEV~Hi 80 (396)
T COG3864 5 EEFRKKFLRFIEESNFDLMNEDNFFALFLIQI-K--DIASACETKASTSYFTMYFNPEIFLNC-PISEMKALLKHEVYHI 80 (396)
T ss_pred HHHHHHHHHHhccCCceeeccchhhhhhhhhh-c--cchhHHHhhccCCceEEEeCHHHHccC-CHHHHHHHHHHHHHHH
Confidence 5677777777776665421 1122221 1 22333322111 356899999999999 9999999999999999
Q ss_pred hhccHHH
Q 017701 290 KLNHTMY 296 (367)
Q Consensus 290 k~~h~~~ 296 (367)
..+|+.+
T Consensus 81 ~l~Hi~r 87 (396)
T COG3864 81 MLNHIKR 87 (396)
T ss_pred HHHHHHh
Confidence 9999864
No 40
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=84.09 E-value=2.7 Score=39.91 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=46.7
Q ss_pred HHHHHHHHcCC--CCCcEEEEeCCCCCCCcce-EEec---cCCCCEEEEchhHHhhCC------CHHHHHHHHHHHHHHh
Q 017701 222 KIEKLASSLKF--PLKKLFVVDGSTRSSHSNA-YMYG---FFKNKRIVLYDTLIQQCK------NDEEIVAVIAHELGHW 289 (367)
Q Consensus 222 ~i~~l~~~~g~--~~~~i~v~~~s~rs~~~NA-~~~G---~~~~~~Ivl~~~Ll~~l~------~~~El~aVlaHElgH~ 289 (367)
....+-++.|- ..|++.....+.++..-.| -++| +|..+++++.....+.|+ .+=.-+.|+|||.||.
T Consensus 99 ~W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHH 178 (295)
T COG2321 99 TWMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHH 178 (295)
T ss_pred HHHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHH
Confidence 33444445443 3577877777766665333 2344 245789999888888772 2345678999999998
Q ss_pred hhcc
Q 017701 290 KLNH 293 (367)
Q Consensus 290 k~~h 293 (367)
..+-
T Consensus 179 VQnl 182 (295)
T COG2321 179 VQNL 182 (295)
T ss_pred HHHH
Confidence 7653
No 41
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=83.30 E-value=1.5 Score=35.34 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=25.9
Q ss_pred CCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHH
Q 017701 257 FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (367)
Q Consensus 257 ~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~ 296 (367)
+..+.|++.- ... +++.+..+++||++|.-+.+...
T Consensus 8 ~~~~~i~~~~---~~~-~~~~~~~~l~HE~~H~~~~~~~~ 43 (128)
T PF13485_consen 8 PGFNRIVVYF---QGS-DEDWLDRVLAHELAHQWFGNYFG 43 (128)
T ss_pred cCCCEEEEec---CCC-CHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456666543 223 78888999999999998777653
No 42
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=81.79 E-value=0.97 Score=47.43 Aligned_cols=73 Identities=23% Similarity=0.178 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHcCCCCCcE-------EEEeC-CCCCCCcceEEeccCC--CCEEEEchhHHhhCCCHHHHHHHHHHHH
Q 017701 217 GELREKIEKLASSLKFPLKKL-------FVVDG-STRSSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHEL 286 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i-------~v~~~-s~rs~~~NA~~~G~~~--~~~Ivl~~~Ll~~l~~~~El~aVlaHEl 286 (367)
+++.+.+.+..+++|....++ ..+|- +++.+.+.||++|+++ .+.|.++=+ .+.+++. +++||+
T Consensus 272 e~~~~~~~~~~~~l~~~~~e~~~~~~~~~~iD~~~r~gK~~Gayc~~~~~~~~P~I~~Nf~-----~t~~dv~-TL~HEl 345 (549)
T TIGR02289 272 DFLLEKAEKMYKELSLEFYEFFNFMREKNLLDLESRKGKAAGGYCTYLPKYKAPFIFSNFN-----GTSGDID-VLTHEA 345 (549)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhcCccccCCCCCCCCCcccCCCCCCCCcEEEEeCC-----CChhHHH-HHHHHh
Confidence 456666666666555432221 12332 4455778999999854 455554311 1445554 689999
Q ss_pred HHhhhccHH
Q 017701 287 GHWKLNHTM 295 (367)
Q Consensus 287 gH~k~~h~~ 295 (367)
||.-|....
T Consensus 346 GHa~H~~~s 354 (549)
T TIGR02289 346 GHAFHVYES 354 (549)
T ss_pred hHHHHHHHh
Confidence 999877544
No 43
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=80.42 E-value=4 Score=36.45 Aligned_cols=40 Identities=25% Similarity=0.168 Sum_probs=24.8
Q ss_pred CcceEEeccCC-CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 248 HSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 248 ~~NA~~~G~~~-~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
..-|+..|.+. .....+.... .- +..+...++|||+||--
T Consensus 103 ~G~A~~g~iC~~~~~~~v~~~~--~~-~~~~~a~~~AHElGH~l 143 (194)
T cd04269 103 VGLAYVGGMCSPKYSGGVVQDH--SR-NLLLFAVTMAHELGHNL 143 (194)
T ss_pred eeeeecCCccCCCcceEEEEeC--Cc-chHHHHHHHHHHHHhhc
Confidence 44677777753 3344333221 11 25678899999999986
No 44
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=80.32 E-value=1.1 Score=38.80 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 017701 275 DEEIVAVIAHELGHWK 290 (367)
Q Consensus 275 ~~El~aVlaHElgH~k 290 (367)
..++.+|+.||+||.-
T Consensus 101 ~~~~~~~~~HEiGHaL 116 (156)
T cd04279 101 AENLQAIALHELGHAL 116 (156)
T ss_pred chHHHHHHHHHhhhhh
Confidence 5689999999999986
No 45
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=79.65 E-value=1.5 Score=46.35 Aligned_cols=45 Identities=29% Similarity=0.354 Sum_probs=30.2
Q ss_pred CCCCCcceEEeccC-CCCEEEEc-hhHHhhCCCHHHHHHHHHHHHHHhhhccHH
Q 017701 244 TRSSHSNAYMYGFF-KNKRIVLY-DTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 244 ~rs~~~NA~~~G~~-~~~~Ivl~-~~Ll~~l~~~~El~aVlaHElgH~k~~h~~ 295 (367)
++.+.+.||++|.+ +.+.|.++ ++ +.++ ...+|||+||.-|....
T Consensus 349 r~gK~~Ga~~~~~~~~~p~il~N~~~------~~~d-v~TLaHElGHa~H~~~~ 395 (591)
T TIGR00181 349 NKGKRSGAYSIGGYKVKPYILMNWDG------TLNS-VFTLAHELGHSMHSYFS 395 (591)
T ss_pred CCCCCCCcccCCCCCCCCeEEEecCC------Ccch-HHHHHHHhhhHHHHHHH
Confidence 44567789999985 45666553 22 3333 35799999999877654
No 46
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=78.52 E-value=4 Score=40.19 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=31.9
Q ss_pred CCCCcceEEeccCC-----CCEEEEchhHHhh-------CCCHHHHHHHHHHHHHHhhhccHH
Q 017701 245 RSSHSNAYMYGFFK-----NKRIVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 245 rs~~~NA~~~G~~~-----~~~Ivl~~~Ll~~-------l~~~~El~aVlaHElgH~k~~h~~ 295 (367)
..+.+.|+++++.+ .+.+.|.-..-.. + +.+++. .+.||+||..|.-..
T Consensus 111 ~gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v~-tl~HE~GHa~h~~l~ 171 (365)
T cd06258 111 KGKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLL-GHDDIN-TLFHEFGHAVHFLLI 171 (365)
T ss_pred CCCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcC-CHHHHH-HHHHHHhHHHHHHHh
Confidence 34667889888752 4566665554332 4 667765 478999999876543
No 47
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=78.11 E-value=6 Score=35.21 Aligned_cols=67 Identities=22% Similarity=0.218 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHcCCC---CCcEEEEeCCCCCCCcceEEeccCC-CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhc
Q 017701 217 GELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~---~~~i~v~~~s~rs~~~NA~~~G~~~-~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (367)
|.++-.+++ .++.|-+ .+.|...+-+.. ..-|+.+ .+.|+|-..-+ .+.++++-+|+|||-|....
T Consensus 16 p~v~fl~~~-~~~~gc~~~~~~~i~c~~C~~~------~~Ggf~p~~~~I~lC~N~~---~~~~~l~~~l~HELIHayD~ 85 (173)
T PF09768_consen 16 PTVRFLMEA-LKKLGCPPVPPRHIKCEPCDSS------VSGGFDPSKKGIVLCQNRI---RSQGHLEDTLTHELIHAYDH 85 (173)
T ss_pred cHHHHHHHH-HHHcCCCCCCCCCeEEEECcCC------CcCCccCCCCCEEEeeCCC---CCHHHHHHHHHHHHHHHHHH
Confidence 344444444 3455644 345666654321 3344544 78899877644 38999999999999998754
Q ss_pred c
Q 017701 293 H 293 (367)
Q Consensus 293 h 293 (367)
=
T Consensus 86 c 86 (173)
T PF09768_consen 86 C 86 (173)
T ss_pred H
Confidence 3
No 48
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=77.85 E-value=2.1 Score=42.88 Aligned_cols=46 Identities=28% Similarity=0.335 Sum_probs=28.4
Q ss_pred CCCCCcceEEeccC--CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHH
Q 017701 244 TRSSHSNAYMYGFF--KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 244 ~rs~~~NA~~~G~~--~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~ 295 (367)
++.+.+-||+.|++ ..++|+.+ .-+ +.++ ...++||+||.-|....
T Consensus 192 r~gK~~gaf~~~~~~~~~p~i~~n--~~~---~~~~-v~tl~HE~GHa~h~~~~ 239 (427)
T cd06459 192 RKGKRSGAYCTGLPPGKHPFILMN--FNG---TLDD-VFTLAHELGHAFHSYLS 239 (427)
T ss_pred CCCCCCCeecCCCCCCCCCeEEec--CCC---Chhh-HHHHHHHhhHHHHHHHH
Confidence 34466779999985 33455443 222 4455 45689999997665543
No 49
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=77.71 E-value=4.3 Score=41.75 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCCCCcceEEeccCCCC----------EEEEchhHHhh-------CCCHHHHHHHHHHHHHHhhhccH
Q 017701 243 STRSSHSNAYMYGFFKNK----------RIVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNHT 294 (367)
Q Consensus 243 s~rs~~~NA~~~G~~~~~----------~Ivl~~~Ll~~-------l~~~~El~aVlaHElgH~k~~h~ 294 (367)
+++.+.+.|+..|+.+.+ ..++.-+.-.. + +-+|+ ..++||+||.-|...
T Consensus 213 ~R~gK~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll-~~~~V-~TLfHEfGHalH~~l 279 (472)
T cd06455 213 PREGKYGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLL-RHDEV-ETFFHEFGHVIHHLL 279 (472)
T ss_pred CCCCCCCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCC-CHHHH-HHHHHHHHHHHHHHh
Confidence 345567889998874332 12332222211 3 45776 458999999987543
No 50
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=76.62 E-value=2.9 Score=44.27 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=28.6
Q ss_pred CCCCCcceEEeccCC--CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccH
Q 017701 244 TRSSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (367)
Q Consensus 244 ~rs~~~NA~~~G~~~--~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~ 294 (367)
++.+.+.||++|+++ .++|+++=+ + +.+++ ..++||+||..|...
T Consensus 345 r~gK~~Ga~~~~~~~~~~p~i~~N~~--~---~~~~v-~TL~HE~GHa~H~~l 391 (587)
T TIGR02290 345 RPGKRGGAFCTGFPPSKEPRVLMNYD--G---SRRDV-STLAHELGHAYHSEL 391 (587)
T ss_pred CCCCCCCcccCCCCCCCCCEEEEecC--C---CchhH-HHHHHHhhHHHHHHH
Confidence 334677899999743 355555311 1 33444 468999999998643
No 51
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=76.35 E-value=1.3 Score=37.82 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=20.9
Q ss_pred CCEEEEchhHHhh--CCCHHHHHHHHHHHHHHhh
Q 017701 259 NKRIVLYDTLIQQ--CKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 259 ~~~Ivl~~~Ll~~--l~~~~El~aVlaHElgH~k 290 (367)
...|.+.+.---. . +..++..|+.||+||.-
T Consensus 85 ~~~i~~~~~~~~~~~~-~~~~~~~v~~HEiGHaL 117 (154)
T PF00413_consen 85 SGDIHFNDDESWTIDD-SGNDLQSVAIHEIGHAL 117 (154)
T ss_dssp TTEEEEETTSHEESSS-SSEEHHHHHHHHHHHHT
T ss_pred cccccccccccchhhh-hhhhhhhhhhhcccccc
Confidence 4566665443211 2 55689999999999984
No 52
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=75.31 E-value=1.6 Score=46.30 Aligned_cols=44 Identities=32% Similarity=0.409 Sum_probs=28.6
Q ss_pred CCCcceEEeccCC--CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHH
Q 017701 246 SSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 246 s~~~NA~~~G~~~--~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~ 295 (367)
.+.+-||+.|..+ .+.|.++ ... +.+. ..+|+||+||..|....
T Consensus 352 gKrsGaYs~~~~~~~~p~IlmN--~~g---t~~d-V~TLaHElGHs~Hs~~s 397 (598)
T COG1164 352 GKRSGAYSIGFYKGDHPFILMN--YDG---TLRD-VFTLAHELGHSVHSYFS 397 (598)
T ss_pred CCCCCcccCCCCCCCCCeEEEe--CCC---chhH-HHHHHHHccHHHHHHHH
Confidence 4678899999854 3455442 222 2233 36899999999877544
No 53
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=75.24 E-value=8.4 Score=29.57 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=33.6
Q ss_pred ChhHHHHHH----HHHHHHcCCCCC---cEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHH
Q 017701 215 PEGELREKI----EKLASSLKFPLK---KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIA 283 (367)
Q Consensus 215 ~~~~L~~~i----~~l~~~~g~~~~---~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVla 283 (367)
.|++.++++ +..+++.|+..+ +|.|++.+. . ...+||+..=-..+ |++||++|-+
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t~---~----------~~~lVlP~~P~~~l-se~~L~~vag 76 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEESP---T----------VLYLVLPVNPDIEL-TDEQLDAVAG 76 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcCC---C----------eEEEEecCCCCCCC-CHHHHHHhhC
Confidence 366777666 566777898754 678888532 1 22333321111178 9999999854
No 54
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=75.23 E-value=50 Score=28.62 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccCCcCChhHHHHHHHHHHH
Q 017701 150 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLF-NKFTPLPEGELREKIEKLAS 228 (367)
Q Consensus 150 ~d~~k~~~l~~vl~~~l~~~~~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~p~~i~pl~-~~~~pl~~~~L~~~i~~l~~ 228 (367)
.|+++-.++..++.+.++.++.++-.+...++-=...++++.+.+++-.= +...- ++-..-+-+....-++.+++
T Consensus 15 ~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq----~~~y~~~~~~~~q~~~~~~fi~~vA~ 90 (149)
T PF11694_consen 15 NDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQ----YSDYQQNQNQHSQSSQMVHFIESVAK 90 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH----HHHHHHHhhhHhHHHHHHHHHHHHHH
Confidence 45566666666677777777778877777776433322222221111111 11111 11111123567778999999
Q ss_pred HcCCCCCcEEEEeC
Q 017701 229 SLKFPLKKLFVVDG 242 (367)
Q Consensus 229 ~~g~~~~~i~v~~~ 242 (367)
+.|.++++|++-..
T Consensus 91 ~~~V~~~~v~VNst 104 (149)
T PF11694_consen 91 DLGVSKEEVYVNST 104 (149)
T ss_pred HhCCChheEEEecc
Confidence 99999999998643
No 55
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=75.17 E-value=3.6 Score=41.99 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=31.4
Q ss_pred cEEEEeCCCCCCCcceEEeccCCC--------CEEEEchhHHh-------hCCCHHHHHHHHHHHHHHhhhc
Q 017701 236 KLFVVDGSTRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 236 ~i~v~~~s~rs~~~NA~~~G~~~~--------~~Ivl~~~Ll~-------~l~~~~El~aVlaHElgH~k~~ 292 (367)
.+|+=-.+|+.+.+.|++.++.++ +..+|.-+.-. .+ +.+++ -.++||+||.-|.
T Consensus 187 ~~ylDl~~R~gK~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v-~tLfHE~GHa~H~ 256 (458)
T PF01432_consen 187 YIYLDLYPRPGKRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLL-SHDDV-ETLFHEFGHAMHS 256 (458)
T ss_dssp EEEEEES--TTS-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B--SHHHH-HHHHHHHHHHHHH
T ss_pred cccccchhcCCCCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCcc-ChhhH-HHHHHHHhHHHHH
Confidence 444433345557788999987544 45555444333 24 67888 6799999998654
No 56
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=74.22 E-value=2 Score=40.22 Aligned_cols=18 Identities=44% Similarity=0.337 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 017701 274 NDEEIVAVIAHELGHWKL 291 (367)
Q Consensus 274 ~~~El~aVlaHElgH~k~ 291 (367)
.+.+.+.++|||+||--.
T Consensus 163 ~~~~~a~t~AHElGHnlG 180 (244)
T cd04270 163 PTKESDLVTAHELGHNFG 180 (244)
T ss_pred chhHHHHHHHHHHHHhcC
Confidence 455688999999999864
No 57
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=72.97 E-value=11 Score=34.82 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=29.4
Q ss_pred CCcceEEeccCCCCEEEEchhHHhhC--------CC--------HHHHHHHHHHHHHHhh
Q 017701 247 SHSNAYMYGFFKNKRIVLYDTLIQQC--------KN--------DEEIVAVIAHELGHWK 290 (367)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~l--------~~--------~~El~aVlaHElgH~k 290 (367)
+..|||.- |..+.|.+.-.+++.. .+ .+-+..++.||+||.-
T Consensus 47 Ge~nA~yd--Pe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAl 104 (220)
T PF14247_consen 47 GEDNAFYD--PENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHAL 104 (220)
T ss_pred CCCCCccC--CCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 67899875 3578899986666431 02 2346789999999974
No 58
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=72.72 E-value=16 Score=37.26 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHhhhhhHHHHhccCCccchhHHHHHHHHHHHHHHhccccH
Q 017701 65 VHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126 (367)
Q Consensus 65 ~~~~~~~~~~~~~l~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~lPf 126 (367)
++.+..++..++++.-|++||+.|++. +|-.+++++.+++-+|.
T Consensus 543 w~a~~~Lia~~L~L~iGliPWiDN~aH------------------lfG~i~GLl~s~~~~PY 586 (652)
T KOG2290|consen 543 WRAFFHLIATLLVLCIGLIPWIDNWAH------------------LFGTIFGLLTSIIFLPY 586 (652)
T ss_pred HHHHHHHHHHHHHHHhccccchhhHHH------------------HHHHHHHHHHHHHhhcc
Confidence 345566777777888899999876542 34566777888888884
No 59
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=72.23 E-value=2.7 Score=36.47 Aligned_cols=40 Identities=33% Similarity=0.277 Sum_probs=21.4
Q ss_pred CCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
...|||.-| .+++.-|+--..+.+--.=.=|+|||++|=.
T Consensus 108 ~~~NAfW~g----~~m~yGdG~~~~f~~~~~~lDVvaHEltHGV 147 (150)
T PF01447_consen 108 NYNNAFWNG----SQMVYGDGDGQIFKPFASSLDVVAHELTHGV 147 (150)
T ss_dssp STT-EEE-S----SSEEEE---SSSBS-GGG-HHHHHHHHHHHH
T ss_pred CccCccccC----CEEEEECCCCcccccCccccceeeecccccc
Confidence 578999865 5677777643333111111349999999954
No 60
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=72.05 E-value=8.2 Score=34.23 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=20.5
Q ss_pred CEEEEchhHHhhC-CCHHHHHHHHHHHHHHhh
Q 017701 260 KRIVLYDTLIQQC-KNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 260 ~~Ivl~~~Ll~~l-~~~~El~aVlaHElgH~k 290 (367)
..|.+...-.... ...+....++.||+||.-
T Consensus 94 g~i~~~~~~~~~~~~~g~~~~~t~~HEiGHaL 125 (186)
T cd04277 94 GDIWFNSSYDTNSDSPGSYGYQTIIHEIGHAL 125 (186)
T ss_pred ceeEEecCcccccCCCChhhHHHHHHHHHHHh
Confidence 4677765533221 124677999999999985
No 61
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=70.26 E-value=2.3 Score=34.88 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=9.9
Q ss_pred HHHHHHHHHhh
Q 017701 280 AVIAHELGHWK 290 (367)
Q Consensus 280 aVlaHElgH~k 290 (367)
.+++||+||.-
T Consensus 109 ~~~~HEiGH~l 119 (124)
T PF13582_consen 109 DTFAHEIGHNL 119 (124)
T ss_dssp THHHHHHHHHT
T ss_pred eEeeehhhHhc
Confidence 89999999964
No 62
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=69.68 E-value=2.9 Score=35.98 Aligned_cols=27 Identities=41% Similarity=0.363 Sum_probs=18.6
Q ss_pred CEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 260 ~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
..+++.+.- . ...+...+++||+||.-
T Consensus 82 ~~~~~~~~~---~-~~~~~~~~~~HElGH~L 108 (167)
T cd00203 82 GVGVLQDNQ---S-GTKEGAQTIAHELGHAL 108 (167)
T ss_pred CcEEEecCC---c-ccccchhhHHHHHHHHh
Confidence 455554431 2 34578999999999986
No 63
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=69.41 E-value=31 Score=31.29 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=44.1
Q ss_pred HhhhccCCcCCh--hH-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHH
Q 017701 205 APLFNKFTPLPE--GE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAV 281 (367)
Q Consensus 205 ~pl~~~~~pl~~--~~-L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aV 281 (367)
..-++|+..+.. +- =.+.-+.+.++.|+..-+|-..++. -++|-. |++|.+-+++.-...- | =.=.||
T Consensus 25 ks~y~KySkV~~s~g~TGaevAr~iLd~nGl~dV~Ve~v~G~-LTDHYD------P~~kvvrLSe~~y~g~-S-ia~~aV 95 (226)
T COG2738 25 KSTYKKYSKVRASSGLTGAEVARMILDENGLYDVPVEEVPGT-LTDHYD------PRRKVVRLSEANYYGP-S-IAAIAV 95 (226)
T ss_pred HHHHHHHhhccCcCCCcHHHHHHHHHhhcCCccceeeeecCC-cccccC------hhhheeeccccccCCc-c-HHHHHH
Confidence 445566665542 11 1233345566778764344444432 122311 3456666777654433 3 344689
Q ss_pred HHHHHHHhhhccH
Q 017701 282 IAHELGHWKLNHT 294 (367)
Q Consensus 282 laHElgH~k~~h~ 294 (367)
-|||.||..+.+-
T Consensus 96 AAHEVGHAiQd~~ 108 (226)
T COG2738 96 AAHEVGHAIQDQE 108 (226)
T ss_pred HHHHhhHHHhhhc
Confidence 9999999876553
No 64
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=68.52 E-value=2.7 Score=36.60 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHhh-hccHHHHH
Q 017701 274 NDEEIVAVIAHELGHWK-LNHTMYSF 298 (367)
Q Consensus 274 ~~~El~aVlaHElgH~k-~~h~~~~~ 298 (367)
+.....-+++||+|||- ..|++..-
T Consensus 65 ~~~~~g~TltHEvGH~LGL~HtF~~~ 90 (154)
T PF05572_consen 65 SQYNFGKTLTHEVGHWLGLYHTFGGG 90 (154)
T ss_dssp TTS-SSHHHHHHHHHHTT---TT---
T ss_pred CccccccchhhhhhhhhcccccccCC
Confidence 55666899999999997 56766554
No 65
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=68.25 E-value=10 Score=38.18 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=42.0
Q ss_pred CcCChhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccC-CCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 212 ~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
++.+.+.-++.-+++++.+|+..++-. +|. .+++|+.|++ ...|| +...-+. +.-.=..-++||+||-.
T Consensus 102 ~~~~~~~Q~~~~~~~~~~~g~df~~gr-iD~-----s~hpF~~~~~~~dvRI--tt~y~~~--d~~~~l~t~iHE~GHal 171 (396)
T cd06460 102 GPFPEEKQEALGRELLEALGFDFDRGR-LDV-----SAHPFTGGLGPGDVRI--TTRYDEN--DFRSALFSTIHETGHAL 171 (396)
T ss_pred CCCCHHHHHHHHHHHHHHhCCcccCCe-eec-----CCCCCCCCCCCCCceE--EeeeCCc--chHHHHHHHHHHhhHHH
Confidence 344445555666788899998865433 443 2456888874 33444 3331111 11122235789999998
Q ss_pred hcc
Q 017701 291 LNH 293 (367)
Q Consensus 291 ~~h 293 (367)
+..
T Consensus 172 ye~ 174 (396)
T cd06460 172 YEQ 174 (396)
T ss_pred HHh
Confidence 877
No 66
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=67.73 E-value=4 Score=37.38 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=22.9
Q ss_pred cceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 249 SNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 249 ~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
.-|+.-|.+...++.+... .- ...+-..++|||+||.-
T Consensus 120 G~A~~g~~C~~~~~~~~~d---~~-~~~~~~~~~AHElGH~l 157 (220)
T cd04272 120 GYAYVGGACTENRVAMGED---TP-GSYYGVYTMTHELAHLL 157 (220)
T ss_pred ceEeecCccCCCceeEeec---CC-CCcccHHHHHHHHHHHh
Confidence 4678878764334443221 11 11245899999999976
No 67
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=67.68 E-value=7.1 Score=40.63 Aligned_cols=46 Identities=30% Similarity=0.324 Sum_probs=31.8
Q ss_pred CcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 235 KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 235 ~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
-++.+++.|-. .-|+-.-.-.+++.+++. .++-+.-|||||++|-=
T Consensus 255 yDllvlPpSFP-------~gGMENPcltF~TpTlla---GDrsl~~vIaHEIAHSW 300 (613)
T KOG1047|consen 255 YDLLVLPPSFP-------FGGMENPCLTFVTPTLLA---GDRSLVDVIAHEIAHSW 300 (613)
T ss_pred ceEEEecCCCC-------cccccCcceeeecchhhc---CCcchhhHHHHHhhhhh
Confidence 37888887532 234422234567888885 67888999999999964
No 68
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=67.33 E-value=1.4 Score=45.72 Aligned_cols=42 Identities=36% Similarity=0.413 Sum_probs=29.4
Q ss_pred CCcceEEeccCCCCEEEEchhHHhhC----C-----CHHHHHHHHHHHHHHhh
Q 017701 247 SHSNAYMYGFFKNKRIVLYDTLIQQC----K-----NDEEIVAVIAHELGHWK 290 (367)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~l----~-----~~~El~aVlaHElgH~k 290 (367)
+..|||-- +....||.+-.+++.- + |=--|-|||||||||--
T Consensus 449 q~VNAYYn--p~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgF 499 (654)
T COG3590 449 QTVNAYYN--PQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGF 499 (654)
T ss_pred HHhhhhcC--CCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccc
Confidence 45699865 2456788888887541 1 22248899999999975
No 69
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=67.18 E-value=1.2e+02 Score=28.99 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHhhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 017701 268 LIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (367)
Q Consensus 268 Ll~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~ 302 (367)
+++.. ++||++.++-+|+.+..++|..-.-+...
T Consensus 120 vvDG~-~~~~i~~iLe~ei~~~~~r~~~~~~v~~~ 153 (271)
T PRK06926 120 AIDGW-EPETIRDIMMAEIAAMEERHRKGRRIFEK 153 (271)
T ss_pred HHCCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34456 99999999999999999888665544433
No 70
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=67.07 E-value=4.1 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHhh
Q 017701 274 NDEEIVAVIAHELGHWK 290 (367)
Q Consensus 274 ~~~El~aVlaHElgH~k 290 (367)
+..+-.-++|||+||.-
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 56788889999999974
No 71
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=66.64 E-value=2.9 Score=36.93 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhh
Q 017701 279 VAVIAHELGHWK 290 (367)
Q Consensus 279 ~aVlaHElgH~k 290 (367)
.-++|||+||.-
T Consensus 112 ~~~~aHElGH~l 123 (173)
T PF13574_consen 112 IDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehhhhHhhc
Confidence 345999999975
No 72
>PRK09109 motC flagellar motor protein; Reviewed
Probab=66.32 E-value=1.2e+02 Score=28.53 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=24.3
Q ss_pred hhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 017701 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (367)
Q Consensus 270 ~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~ 302 (367)
+.. ++||++.++-.|+....++|....-.+..
T Consensus 117 ~g~-~~~~i~~~le~~i~~~~~r~~~~~~~l~~ 148 (246)
T PRK09109 117 DGA-EPESIRSVLEVEIDTQEHRDLQAAKVFES 148 (246)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 345 89999999999999999887555444443
No 73
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=66.22 E-value=2.7 Score=36.25 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=21.4
Q ss_pred CCCEEEEchhHHhhC---CCHHHHHHHHHHHHHHhh
Q 017701 258 KNKRIVLYDTLIQQC---KNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 258 ~~~~Ivl~~~Ll~~l---~~~~El~aVlaHElgH~k 290 (367)
....|.+.+.-.-.. .+...+..|+.||+||.-
T Consensus 84 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 119 (157)
T cd04278 84 IGGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHAL 119 (157)
T ss_pred cceeEEECCCcccccCCCCccchHHHHHHHHhcccc
Confidence 356677765422111 034679999999999974
No 74
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=66.14 E-value=4.4 Score=38.39 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=26.1
Q ss_pred chhHHhhC--CCHHHHHHHHHHHHHHhh---hccHHHHHH
Q 017701 265 YDTLIQQC--KNDEEIVAVIAHELGHWK---LNHTMYSFI 299 (367)
Q Consensus 265 ~~~Ll~~l--~~~~El~aVlaHElgH~k---~~h~~~~~~ 299 (367)
.|.+++.+ .++++++..|-||++|-| ++|..-+=.
T Consensus 182 dDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNEs 221 (376)
T COG4324 182 DDPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNES 221 (376)
T ss_pred ccHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhHH
Confidence 45566553 289999999999999987 677665543
No 75
>PF14891 Peptidase_M91: Effector protein
Probab=65.46 E-value=23 Score=31.30 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 017701 275 DEEIVAVIAHELGHWKL 291 (367)
Q Consensus 275 ~~El~aVlaHElgH~k~ 291 (367)
+.+=..+|+|||+|..+
T Consensus 100 ~~~p~v~L~HEL~HA~~ 116 (174)
T PF14891_consen 100 PRPPFVVLYHELIHAYD 116 (174)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44557899999999864
No 76
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=64.91 E-value=4.4 Score=37.07 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhccHHH
Q 017701 276 EEIVAVIAHELGHWKLNHTMY 296 (367)
Q Consensus 276 ~El~aVlaHElgH~k~~h~~~ 296 (367)
--+..+++||++|+..+|...
T Consensus 99 ~A~~fil~HE~~Hv~~~h~~~ 119 (206)
T PF10463_consen 99 CAIAFILLHELAHVVLGHEGD 119 (206)
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 457789999999999999877
No 77
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=64.19 E-value=1.3e+02 Score=28.49 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=44.5
Q ss_pred CCcCChhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 211 FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 211 ~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
.++.+..++-+.+.+++++..- +.+.-++.. +..|.|.- +.- +-+.+.- +++|++.++-.|+....
T Consensus 68 ~~~~~~~~~i~~l~~la~~aR~--~GllaLE~~---~i~d~f~~---~~l-----~l~vdg~-~~~~i~~~l~~~~~~~~ 133 (254)
T PRK08990 68 FKIDKPEDLIEQIVEMADAARK--GGFLALEEA---EISNSFMQ---KGV-----DLLVDGH-DGDVVRAALEKDIALTE 133 (254)
T ss_pred CCCCCHHHHHHHHHHHHHHHhh--ccHhhhhcc---ccchHHHH---HHH-----HHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3445556777777777765432 222222221 12343321 000 1122344 89999999999999988
Q ss_pred hccHHHHHHHHHH
Q 017701 291 LNHTMYSFIAVQV 303 (367)
Q Consensus 291 ~~h~~~~~~~~~~ 303 (367)
++|-...-.+..+
T Consensus 134 ~~~~~~~~~l~~~ 146 (254)
T PRK08990 134 ERHETGIGIFRAF 146 (254)
T ss_pred HHHHhHhHHHHHH
Confidence 8887666555443
No 78
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=63.97 E-value=7.6 Score=34.12 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=32.2
Q ss_pred eEEec-cCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhhccHHH
Q 017701 251 AYMYG-FFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (367)
Q Consensus 251 A~~~G-~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~h~~~ 296 (367)
+...| +-+++-|++-++-+ .+.+++.-|++||+-|.-..|-++
T Consensus 66 ~~~~GGy~~~~gIvlCqN~l---~~q~h~n~vv~HElIH~fDd~r~~ 109 (194)
T KOG3314|consen 66 GPVAGGYTPGRGIVLCQNRL---TIQDHVNQVVIHELIHAFDDCRAK 109 (194)
T ss_pred CCccCCccCCCceEEecccc---chHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444 44566699988744 388999999999999998777655
No 79
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=63.53 E-value=15 Score=35.42 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=36.1
Q ss_pred hhccCCcCChh-HHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEec
Q 017701 207 LFNKFTPLPEG-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYG 255 (367)
Q Consensus 207 l~~~~~pl~~~-~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G 255 (367)
.++++.|++|+ ++++.+.++|++.|++ .+|++.+ ...|+.+.|
T Consensus 9 a~Y~f~~i~dp~~~~~~l~~~~~~~~vk-GrillA~-----EGINgtvsG 52 (308)
T COG1054 9 AYYKFVPIEDPEALRDPLLALCKALGVK-GRILLAH-----EGINGTVSG 52 (308)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCce-eEEEEcc-----CCcceeEec
Confidence 45789999875 5889999999999997 6899987 468999987
No 80
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=62.90 E-value=3 Score=37.17 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 017701 275 DEEIVAVIAHELGHWK 290 (367)
Q Consensus 275 ~~El~aVlaHElgH~k 290 (367)
..+...++|||+||.-
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 4577889999999986
No 81
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=62.45 E-value=6.3 Score=32.82 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=22.0
Q ss_pred CEEEEchh-HHhhCCCH------HHHHHHHHHHHHHhh
Q 017701 260 KRIVLYDT-LIQQCKND------EEIVAVIAHELGHWK 290 (367)
Q Consensus 260 ~~Ivl~~~-Ll~~l~~~------~El~aVlaHElgH~k 290 (367)
.||.+++. +++.+ .+ |++.-|+-||+||.-
T Consensus 85 ~rItlYRrailDyw-ae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 85 DRITLYRRALLDYW-AENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred ceeeeeHHHHHHHH-hhhhhhHhhHhhhhhhhhhhhhc
Confidence 58888865 66666 33 557778899999974
No 82
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=60.87 E-value=6.7 Score=35.18 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=21.7
Q ss_pred cceEEeccCCC-CEEEEchhHHhhCCCHHHHHHHHHHHHHHh
Q 017701 249 SNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (367)
Q Consensus 249 ~NA~~~G~~~~-~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~ 289 (367)
.-|+..|.+.. ....+...-- - +......++|||+||.
T Consensus 104 G~a~~~~~C~~~~s~~i~~~~~--~-~~~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 104 GLAYVGGMCSPSRSCGIVEDHS--R-SGLSFAVIIAHELGHN 142 (199)
T ss_dssp EEE-TT-TTSTTTSEEEEE-SS--S-SHHHHHHHHHHHHHHH
T ss_pred eeEeCCCCCCcCCCCcEeeecc--c-hhHHHHHHHHHHHHHh
Confidence 34666666532 3333322211 2 6788999999999996
No 83
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=57.64 E-value=3.8 Score=38.05 Aligned_cols=11 Identities=55% Similarity=0.752 Sum_probs=9.8
Q ss_pred HHHHHHHHHhh
Q 017701 280 AVIAHELGHWK 290 (367)
Q Consensus 280 aVlaHElgH~k 290 (367)
.++|||+||--
T Consensus 147 ~t~AHElGHnL 157 (228)
T cd04271 147 QVFAHEIGHTF 157 (228)
T ss_pred eehhhhhhhhc
Confidence 58999999986
No 84
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=57.46 E-value=22 Score=35.25 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=45.9
Q ss_pred CCcCChhHHHHHHHHHHHHc----CCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHH
Q 017701 211 FTPLPEGELREKIEKLASSL----KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHEL 286 (367)
Q Consensus 211 ~~pl~~~~L~~~i~~l~~~~----g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHEl 286 (367)
-+.++.++..+.+++.+++. +++ .+|.+-|+ -.++|.+. +.+|.|..+. .+ ++.++++.+-||+
T Consensus 106 ~~~~~a~~~~~~~~~~~~~y~~~~~~~-~~V~~sdd----l~a~A~v~----~~~l~I~~~~--~f-s~~~l~~L~~HEi 173 (349)
T PF08014_consen 106 EKTLDAEEAVSRLQERLKKYFGKEGFE-VKVELSDD----LLARAMVS----GDRLKINKNA--MF-SERDLEALLHHEI 173 (349)
T ss_pred ccCCCHHHHHHHHHHHHHHHhcccCce-EEEEEcCC----cchhhccc----CCeeEEcCCC--Cc-CHHHHHHHHHHhh
Confidence 34456677888888877776 443 23444432 34677664 3457777653 35 9999999999999
Q ss_pred H-Hhhhc
Q 017701 287 G-HWKLN 292 (367)
Q Consensus 287 g-H~k~~ 292 (367)
| |+...
T Consensus 174 gvH~lt~ 180 (349)
T PF08014_consen 174 GVHLLTT 180 (349)
T ss_pred hhhhccc
Confidence 5 65543
No 85
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=57.13 E-value=13 Score=37.83 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=31.6
Q ss_pred CCCCCCcceEEeccCCC--------CEEEEchhHHh-------hCCCHHHHHHHHHHHHHHhhhccHHH
Q 017701 243 STRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKLNHTMY 296 (367)
Q Consensus 243 s~rs~~~NA~~~G~~~~--------~~Ivl~~~Ll~-------~l~~~~El~aVlaHElgH~k~~h~~~ 296 (367)
+|..+.++|++.++.++ +.+++.-+.-. .+ +-+|+. .+.||+||.-|....+
T Consensus 160 ~R~~K~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL-~~~~v~-tLfHEfGHalH~~ls~ 226 (422)
T cd06456 160 AREGKRGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALL-THDEVT-TLFHEFGHALHHLLTD 226 (422)
T ss_pred CCCCCCCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCcc-CHHHHH-HHHHHHHHHHHHHHhc
Confidence 44556778998887432 33444322221 24 667765 4889999998766443
No 86
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=56.93 E-value=5.2 Score=36.44 Aligned_cols=11 Identities=45% Similarity=0.682 Sum_probs=9.3
Q ss_pred HHHHHHHHHhh
Q 017701 280 AVIAHELGHWK 290 (367)
Q Consensus 280 aVlaHElgH~k 290 (367)
-+++||+||.-
T Consensus 139 ~~~aHEiGH~l 149 (206)
T PF13583_consen 139 QTFAHEIGHNL 149 (206)
T ss_pred hHHHHHHHHHh
Confidence 44999999986
No 87
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=56.37 E-value=89 Score=29.75 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=51.6
Q ss_pred HHHHHhhhccCCcCChhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHH
Q 017701 201 PVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVA 280 (367)
Q Consensus 201 p~~i~pl~~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~a 280 (367)
|..+.-.|.+.++.+..|+-..+-+++++..- +.+.-+++ ......|.|.. +.=|++ ++-- +++|+++
T Consensus 60 ~k~~~~~F~~~k~~~~~~li~~l~~la~~~Rk--~GllaLE~-~~~~~~d~Fi~---~glrli-----VdG~-~~~~I~~ 127 (266)
T COG1291 60 PKALKEAFRKPKKEDYVDLIALLYELAEKARK--EGLLALEA-LADEIEDPFIK---DGLRLI-----VDGN-DPEEIEA 127 (266)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHH--hhHHHHHH-HHHhccchHHH---HhHHHH-----hcCC-CHHHHHH
Confidence 44555566666655667777777666655421 12222221 11245566653 122222 2334 7999999
Q ss_pred HHHHHHHHhhhccHHHHHHHHH
Q 017701 281 VIAHELGHWKLNHTMYSFIAVQ 302 (367)
Q Consensus 281 VlaHElgH~k~~h~~~~~~~~~ 302 (367)
++=-|+.+..++|..-.-.+..
T Consensus 128 ~me~Ei~~~ee~~~~~a~~~~~ 149 (266)
T COG1291 128 LMEEEIETMEERHEKPAHAFTT 149 (266)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999998888665544433
No 88
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=55.91 E-value=15 Score=29.46 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCEEEEchh-HHhhCCCHHH----HHHHHHHHHHHhhhcc
Q 017701 259 NKRIVLYDT-LIQQCKNDEE----IVAVIAHELGHWKLNH 293 (367)
Q Consensus 259 ~~~Ivl~~~-Ll~~l~~~~E----l~aVlaHElgH~k~~h 293 (367)
..||++++. +.+.+.+.+| +.-++-||+||+-..+
T Consensus 49 p~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~ 88 (97)
T PF06262_consen 49 PDRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGIS 88 (97)
T ss_dssp -EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 368888866 5555545554 5667889999986543
No 89
>PRK01415 hypothetical protein; Validated
Probab=55.90 E-value=28 Score=32.79 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=36.1
Q ss_pred hhccCCcCChh-HHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEecc
Q 017701 207 LFNKFTPLPEG-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF 256 (367)
Q Consensus 207 l~~~~~pl~~~-~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~ 256 (367)
.|+++.|++|+ ++++.+.+.|++.|+. .+|++.+ ...|+-..|-
T Consensus 9 ~fY~f~~i~~~~~~~~~l~~~~~~~~~~-G~i~la~-----EGIN~tisg~ 53 (247)
T PRK01415 9 SAYSFVNIEEPANLIPKLLLIGKRKYVR-GTILLAN-----EGFNGSFSGS 53 (247)
T ss_pred EEEccccCCCHHHHHHHHHHHHHHcCCe-eEEEEcc-----CccceEeeCC
Confidence 56789999875 5889999999999986 6899876 4679998873
No 90
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=55.48 E-value=24 Score=39.35 Aligned_cols=18 Identities=44% Similarity=0.383 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 017701 276 EEIVAVIAHELGHWKLNH 293 (367)
Q Consensus 276 ~El~aVlaHElgH~k~~h 293 (367)
+.+..|+|||++|-=.++
T Consensus 281 ~~i~~VIaHElaHqWfGN 298 (863)
T TIGR02414 281 ERIESVIAHEYFHNWTGN 298 (863)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 458899999999965443
No 91
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=54.33 E-value=6.9 Score=38.56 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHH-hh--CC---CHHHHHHHHHHHHHHhh
Q 017701 219 LREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI-QQ--CK---NDEEIVAVIAHELGHWK 290 (367)
Q Consensus 219 L~~~i~~l~~~~g~~--~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll-~~--l~---~~~El~aVlaHElgH~k 290 (367)
..+.++-+.+..|.| .+++-++--+. -..++ +..-+-|.+.+..+ .. .. ...++..++|||++|.=
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~--~~~~~----me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqW 307 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPD--FPFGG----MENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQW 307 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST---SSSE----E--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhhccccceecceeEEEEec--ccccc----ccccccccccccccccCcccccchhhhhhHHHHHHHHHHHH
Confidence 445555666677865 34443332211 11122 22234555554432 11 10 24579999999999985
Q ss_pred hcc
Q 017701 291 LNH 293 (367)
Q Consensus 291 ~~h 293 (367)
-++
T Consensus 308 fGn 310 (390)
T PF01433_consen 308 FGN 310 (390)
T ss_dssp BTT
T ss_pred hcc
Confidence 543
No 92
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=54.25 E-value=10 Score=34.05 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=25.0
Q ss_pred CCCEEEEchhHHhhC----C-----CHHHHHHHHHHHHHHhhhccH
Q 017701 258 KNKRIVLYDTLIQQC----K-----NDEEIVAVIAHELGHWKLNHT 294 (367)
Q Consensus 258 ~~~~Ivl~~~Ll~~l----~-----~~~El~aVlaHElgH~k~~h~ 294 (367)
...+|+++.+++..- + +=--+-++||||++|.-..+.
T Consensus 7 ~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g 52 (206)
T PF01431_consen 7 RFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEG 52 (206)
T ss_dssp TTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTG
T ss_pred ccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456777777766431 0 234578999999999875544
No 93
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=54.06 E-value=24 Score=25.49 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhc
Q 017701 186 WAFMFVLSLVMMTLYPVLIAPLFN 209 (367)
Q Consensus 186 ~~~~~~~~~~~~~~~p~~i~pl~~ 209 (367)
.++...++++...+||+++.|+.+
T Consensus 9 ~~~ggfVg~iG~a~Ypi~~~Pmm~ 32 (58)
T PF15061_consen 9 LFVGGFVGLIGAALYPIYFRPMMN 32 (58)
T ss_pred hhHHHHHHHHHHHHhhhhcccccC
Confidence 334445567778899999999886
No 94
>PRK08456 flagellar motor protein MotA; Validated
Probab=53.45 E-value=2e+02 Score=27.11 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=39.0
Q ss_pred CCcCChhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhH---HhhCCCHHHHHHHHHHHHH
Q 017701 211 FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTL---IQQCKNDEEIVAVIAHELG 287 (367)
Q Consensus 211 ~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~L---l~~l~~~~El~aVlaHElg 287 (367)
.++.+.+++.+.+.+++++...+ ...-.++..+ +..+.+ +.+++ .+.. ++||++.++-.|+.
T Consensus 69 ~~~~~~~~li~~l~~l~~~~r~~--g~laLe~~~~-~~~~~f-----------l~~gL~~~~~g~-~~~~i~~~le~ei~ 133 (257)
T PRK08456 69 NPGVNLNERIKQLVELATLARKD--GVLALEGRVA-QIEDEF-----------LKNGLSMLVDGK-DLEEIKESMEIQIE 133 (257)
T ss_pred cCCCCHHHHHHHHHHHHHHhhhh--hHHHHhhccc-CcHHHH-----------HHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 33445677888888888776443 2222221111 111211 11222 2345 89999999999999
Q ss_pred HhhhccH
Q 017701 288 HWKLNHT 294 (367)
Q Consensus 288 H~k~~h~ 294 (367)
...++|.
T Consensus 134 ~~~~~~~ 140 (257)
T PRK08456 134 EMEEYYH 140 (257)
T ss_pred HHHHHHH
Confidence 7777765
No 95
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=53.03 E-value=26 Score=34.97 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=45.4
Q ss_pred cCChhHHHHHHHHHHHHcCCCC-CcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHH
Q 017701 213 PLPEGELREKIEKLASSLKFPL-KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (367)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~-~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElg 287 (367)
+++.++..+.+++.+++.+... .+|.+.|+ -.++|.+. +++|.|..+. .. ++.|+.+.+-||+|
T Consensus 133 ~~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~----l~a~a~v~----~~~l~i~~~a--~f-s~~~l~~L~~HEig 197 (366)
T TIGR02421 133 PVSATEAAEILQQRLEDYFGEETIRVTLSDD----LPAGAMVS----GDKLKLNSDA--MF-SERDLEALIHHEIG 197 (366)
T ss_pred CcCHHHHHHHHHHHHHHhCCCCceEEEECcc----hhHHHhcc----CCeEEECCCC--Cc-CHHHHHHHHHHhHH
Confidence 4567889999999999988752 23333332 23577665 3478887753 35 99999999999998
No 96
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=52.46 E-value=1.6e+02 Score=32.06 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=30.9
Q ss_pred HHHHHHhccccHhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017701 115 VMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 175 (367)
Q Consensus 115 ~~l~~~~~~lPf~~Y~~f~le~~~Gf~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~ 175 (367)
..++..++++|.++|++-..-+- .++..--.-+.+.+.+.+++.++=.+++.+...++-
T Consensus 231 ~~~~~hll~Lpl~~f~~r~~Ge~--~sR~~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~ 289 (709)
T COG2274 231 GRFFRHLLRLPLSYFEKRSVGEI--ISRVRELEQIREFLTGSILTLIIDLLFALIFLAVMF 289 (709)
T ss_pred HHHHHHHHcCcHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888999999875332110 012222223445555555555555555554444443
No 97
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=50.96 E-value=9.2 Score=37.58 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=25.1
Q ss_pred chhHHhhC--CCHHHHHHHHHHHHHHhh---hccHHHHH
Q 017701 265 YDTLIQQC--KNDEEIVAVIAHELGHWK---LNHTMYSF 298 (367)
Q Consensus 265 ~~~Ll~~l--~~~~El~aVlaHElgH~k---~~h~~~~~ 298 (367)
.|.+++.+ .++.|++.+|-||++|-. .+|+.-+=
T Consensus 150 ~DPlLSt~l~~~~~~LA~LIfHELaHq~~Yv~~dt~FNE 188 (337)
T PF10023_consen 150 DDPLLSTMLRYPDGELARLIFHELAHQTLYVKGDTAFNE 188 (337)
T ss_pred CCcccccccCCCchHHHHHHHHHHhhceeecCCCchhhH
Confidence 45565554 289999999999999964 66766553
No 98
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=50.76 E-value=7.6 Score=32.59 Aligned_cols=12 Identities=58% Similarity=0.722 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhh
Q 017701 279 VAVIAHELGHWK 290 (367)
Q Consensus 279 ~aVlaHElgH~k 290 (367)
.+|++||+||.-
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 469999999974
No 99
>PRK14015 pepN aminopeptidase N; Provisional
Probab=50.59 E-value=31 Score=38.52 Aligned_cols=18 Identities=44% Similarity=0.383 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 017701 276 EEIVAVIAHELGHWKLNH 293 (367)
Q Consensus 276 ~El~aVlaHElgH~k~~h 293 (367)
..++.|+|||++|-=.++
T Consensus 294 ~~i~~vIaHElaHqWFGN 311 (875)
T PRK14015 294 ERIESVIAHEYFHNWTGN 311 (875)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 348899999999965443
No 100
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=49.50 E-value=53 Score=29.31 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhh-hcc
Q 017701 277 EIVAVIAHELGHWK-LNH 293 (367)
Q Consensus 277 El~aVlaHElgH~k-~~h 293 (367)
-+.-..+||+||.- ..|
T Consensus 124 R~~k~~~HElGH~lGL~H 141 (179)
T PRK13267 124 RVRKEVTHELGHTLGLEH 141 (179)
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 34455799999983 444
No 101
>PRK08124 flagellar motor protein MotA; Validated
Probab=49.36 E-value=2.4e+02 Score=26.75 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=24.2
Q ss_pred hhCCCHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 017701 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (367)
Q Consensus 270 ~~l~~~~El~aVlaHElgH~k~~h~~~~~~~~~ 302 (367)
+.- ++||++.++-.|+....++|-...-+...
T Consensus 118 ~g~-~~~~i~~~le~~i~~~~~~~~~~~~~l~~ 149 (263)
T PRK08124 118 DGQ-SPEFIRDVLEEEIEAMEERHAAGAAIFTQ 149 (263)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344 89999999999999888877665555544
No 102
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=48.58 E-value=12 Score=33.79 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhh
Q 017701 276 EEIVAVIAHELGHWK 290 (367)
Q Consensus 276 ~El~aVlaHElgH~k 290 (367)
.+..+++.||+||.-
T Consensus 90 ~~~~~~i~HElgHaL 104 (198)
T cd04327 90 PEFSRVVLHEFGHAL 104 (198)
T ss_pred hhHHHHHHHHHHHHh
Confidence 466789999999986
No 103
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=47.59 E-value=12 Score=33.17 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhh
Q 017701 278 IVAVIAHELGHWK 290 (367)
Q Consensus 278 l~aVlaHElgH~k 290 (367)
+.+++.||+||..
T Consensus 7 ~i~i~~HE~gH~~ 19 (192)
T PF02163_consen 7 LISIVLHELGHAL 19 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 4578999999975
No 104
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=46.45 E-value=13 Score=33.65 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=23.9
Q ss_pred CEEEEchhHHhhCC------CHHHHHHHHHHHHHHhh-hccH
Q 017701 260 KRIVLYDTLIQQCK------NDEEIVAVIAHELGHWK-LNHT 294 (367)
Q Consensus 260 ~~Ivl~~~Ll~~l~------~~~El~aVlaHElgH~k-~~h~ 294 (367)
..|.+..+.++... ..+-+..+++||+||.- ..|.
T Consensus 92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~lGl~hn 133 (197)
T cd04276 92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTLGLRHN 133 (197)
T ss_pred EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45678777765431 23558899999999975 4443
No 105
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=46.29 E-value=2.9e+02 Score=27.37 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 017701 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~~ 242 (367)
||+++.+++++.++. ++|..++.+.|-
T Consensus 230 dP~iK~rrR~~~re~~~~~m~~~V~~AdVVItNP 263 (349)
T PRK12721 230 DPEIKQKRRELQSEIQSGSLANNVKKSTAVVRNP 263 (349)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEcC
Confidence 688888888777642 556668888773
No 106
>PRK05320 rhodanese superfamily protein; Provisional
Probab=45.97 E-value=26 Score=33.12 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=35.3
Q ss_pred hhccCCcCChh-HHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEecc
Q 017701 207 LFNKFTPLPEG-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF 256 (367)
Q Consensus 207 l~~~~~pl~~~-~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~ 256 (367)
.|+++.|++|+ ++++.+.++|++.|+. .+|++.+ ...|+-+.|-
T Consensus 7 ~~Y~f~~i~~~~~~~~~~~~~~~~~~~~-G~i~ia~-----eGiN~t~~g~ 51 (257)
T PRK05320 7 AAYKFVSLDDPETLRPLVLARCEALGLK-GTILLAP-----EGINLFLAGT 51 (257)
T ss_pred EEEceeecCCHHHHHHHHHHHHHHCCCe-EEEEEcC-----CCceEEEEee
Confidence 46789999875 5889999999999986 6888875 3578888763
No 107
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=45.82 E-value=1.1e+02 Score=27.10 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCCcCChhHHHHHHHHHHH
Q 017701 155 GMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLAS 228 (367)
Q Consensus 155 ~~~l~~vl~~~l~~~~~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~p~~i~pl~~~~~pl~~~~L~~~i~~l~~ 228 (367)
+.++-.++......+-+.+.++....|.-.+.++ ++..+.=....|++...+|+.+=+-...+.++|-
T Consensus 73 gi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG~------~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~Ci 140 (173)
T PF11085_consen 73 GIVFIGVFSIVAALLYYALLKKFKGPWPGILYGL------AWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCI 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH------HHHHHHHHHhcccccCChhhhhCchhHHHHHHHH
Confidence 3444444454444555567888766553322222 2211111245678877888887777788888885
No 108
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=45.57 E-value=2.8e+02 Score=26.48 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHHHc
Q 017701 215 PEGELREKIEKLASSL 230 (367)
Q Consensus 215 ~~~~L~~~i~~l~~~~ 230 (367)
+|++..+++++.+++.
T Consensus 210 ~~~~~~~~I~~~i~~~ 225 (299)
T PRK09509 210 LPDEERQEIIDIVTSW 225 (299)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3567788888888764
No 109
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=45.35 E-value=3.2e+02 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 017701 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~~ 242 (367)
||+++.+++++.++. ++|..++.+.|-
T Consensus 239 dP~iK~r~Rq~~re~~~~~m~~~V~~AdVVItNP 272 (358)
T PRK13109 239 DPSVKARLRSLAQDRARNRMLANVPRATLVIANP 272 (358)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECC
Confidence 688888888877653 556668888873
No 110
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=45.30 E-value=34 Score=37.97 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=20.3
Q ss_pred CEEEEchhHHhhCC-C---HHHHHHHHHHHHHHhhhc
Q 017701 260 KRIVLYDTLIQQCK-N---DEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 260 ~~Ivl~~~Ll~~l~-~---~~El~aVlaHElgH~k~~ 292 (367)
+.|...+..+..-+ + .+.+..|+|||++|-=.+
T Consensus 265 Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFG 301 (831)
T TIGR02412 265 GCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFG 301 (831)
T ss_pred ceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 45566555442110 2 345778999999996655
No 111
>PRK06298 type III secretion system protein; Validated
Probab=44.89 E-value=3.2e+02 Score=27.19 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHH-------cCCCCCcEEEEeC
Q 017701 216 EGELREKIEKLASS-------LKFPLKKLFVVDG 242 (367)
Q Consensus 216 ~~~L~~~i~~l~~~-------~g~~~~~i~v~~~ 242 (367)
||+++.+++++.++ .++|..++.+.|-
T Consensus 231 dP~iK~rrR~~~re~~~~~m~~~V~~AdVVItNP 264 (356)
T PRK06298 231 NPEIKGRRRQIAQEIAYEDTSSQVKHASAVVSNP 264 (356)
T ss_pred CHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEECC
Confidence 58888888877654 3555567888773
No 112
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=44.42 E-value=33 Score=28.74 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 017701 3 FPYMEAVVGFMILMYFFETYLDLRQHAALKLPK 35 (367)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~rq~~~~~~~~ 35 (367)
-||++.+++++.+..++...|--|+.+.-++.|
T Consensus 33 tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK 65 (125)
T PF15048_consen 33 TPWNYSILALSFVVLVISFFLLGRSIQANRNRK 65 (125)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhHhccccc
Confidence 589999999999999999999999998876543
No 113
>COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning]
Probab=43.69 E-value=1.3e+02 Score=30.30 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=19.2
Q ss_pred CCEEEEchhHHhhCCCHHHHHHHHHHHHHHh
Q 017701 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (367)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~ 289 (367)
.|+-++++. +.|=+-||+|+|+|=+
T Consensus 260 ~k~~~lPe~------hTDFIfavi~EE~G~i 284 (381)
T COG0772 260 QKLGYLPEA------HTDFIFAVIGEEFGFI 284 (381)
T ss_pred ccceeeccC------ccchhHHHHHHHHHHH
Confidence 345566654 7899999999999965
No 114
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=42.84 E-value=16 Score=32.19 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhh
Q 017701 278 IVAVIAHELGHWK 290 (367)
Q Consensus 278 l~aVlaHElgH~k 290 (367)
+.++..||+||..
T Consensus 8 ~i~i~iHE~gH~~ 20 (180)
T cd05709 8 LISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHHH
Confidence 3578999999986
No 115
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=42.54 E-value=4.9 Score=36.43 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=21.2
Q ss_pred cceEEeccCC-CCEEEE-chhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 249 SNAYMYGFFK-NKRIVL-YDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 249 ~NA~~~G~~~-~~~Ivl-~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
.-|+.-|.+. .....+ .++ .-....++|||+||.-
T Consensus 116 G~A~~ggiC~~~~s~~i~~~~-------~~~~a~~~aHElGH~L 152 (207)
T cd04273 116 GLAPVGGMCSPSRSCSINEDT-------GLSSAFTIAHELGHVL 152 (207)
T ss_pred EEeccccCCCCCcceEEEcCC-------CceeEEeeeeechhhc
Confidence 3577777753 333333 232 1234689999999975
No 116
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=42.04 E-value=42 Score=36.55 Aligned_cols=71 Identities=24% Similarity=0.246 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHH---H-cC--CCCCcEEEEeC--CCCCCCcceEEeccCCC-CEEEEchhHHhhCCCHHHHHHHHHHHHH
Q 017701 217 GELREKIEKLAS---S-LK--FPLKKLFVVDG--STRSSHSNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (367)
Q Consensus 217 ~~L~~~i~~l~~---~-~g--~~~~~i~v~~~--s~rs~~~NA~~~G~~~~-~~Ivl~~~Ll~~l~~~~El~aVlaHElg 287 (367)
+++.+.+++..+ . .. .+.+..+++-. ...+....||+.|++.. .+.-+...- .- +....+.|+|||+|
T Consensus 256 ~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~--~~-~~~~~a~v~Ahelg 332 (716)
T KOG3607|consen 256 EDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFH--SD-ILLAFAVVLAHELG 332 (716)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecC--cc-cchhHHHHHHHHHH
Confidence 466666665553 2 22 13344555432 23345668999888532 332221111 11 46788999999999
Q ss_pred Hhh
Q 017701 288 HWK 290 (367)
Q Consensus 288 H~k 290 (367)
|.-
T Consensus 333 H~l 335 (716)
T KOG3607|consen 333 HNL 335 (716)
T ss_pred hhc
Confidence 975
No 117
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=41.51 E-value=3.6e+02 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHH-------cCCCCCcEEEEe
Q 017701 216 EGELREKIEKLASS-------LKFPLKKLFVVD 241 (367)
Q Consensus 216 ~~~L~~~i~~l~~~-------~g~~~~~i~v~~ 241 (367)
||+++.+++++.++ .++|..++.+.|
T Consensus 229 dP~iK~r~R~~~re~~~~~m~~~V~~AdVVitN 261 (342)
T TIGR01404 229 DPEIKSKRRELHQEILSEQLKSDVKRSTLVVAN 261 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEC
Confidence 58888888877754 245556788876
No 118
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=41.50 E-value=15 Score=32.89 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhh
Q 017701 279 VAVIAHELGHWK 290 (367)
Q Consensus 279 ~aVlaHElgH~k 290 (367)
..|+-||+||.-
T Consensus 10 ~~v~iHElGH~~ 21 (182)
T cd06163 10 ILIFVHELGHFL 21 (182)
T ss_pred HHHHHHHHHHHH
Confidence 468899999985
No 119
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=40.52 E-value=18 Score=33.00 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhh
Q 017701 277 EIVAVIAHELGHWK 290 (367)
Q Consensus 277 El~aVlaHElgH~k 290 (367)
=..+|+.||+||..
T Consensus 37 l~~~v~iHElgH~~ 50 (208)
T cd06161 37 LFLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 35689999999974
No 120
>PRK09672 phage exclusion protein Lit; Provisional
Probab=40.16 E-value=19 Score=34.74 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhccHH
Q 017701 275 DEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 275 ~~El~aVlaHElgH~k~~h~~ 295 (367)
-.-+..|+.||++|+..+|.-
T Consensus 162 l~A~a~i~~HEiaHv~~~h~~ 182 (305)
T PRK09672 162 LCALAWILLHEIAHVEFQHSS 182 (305)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 356788999999999999987
No 121
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=40.05 E-value=82 Score=32.78 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhh
Q 017701 214 LPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (367)
Q Consensus 214 l~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k 290 (367)
.+.+.-++.-+++++..|++.++-.+ |.| . ..|++|++ .+.+=+|...-+. +.-.=..=..||.||--
T Consensus 204 ~~~~~Q~~~~~~~~~~~G~d~~~grl-d~s---~--HPFt~~~~-~~DvRiTTry~e~--d~~~~l~s~iHE~GHal 271 (494)
T PF02074_consen 204 FPEEKQKAFSRELLEYLGFDFDRGRL-DES---A--HPFTTGFG-PNDVRITTRYDED--DFLSALFSTIHETGHAL 271 (494)
T ss_dssp --HHHHHHHHHHHHHHHT--GCGEEE-EE----S--S-EEEEEE-TTEEEEEE--BTT--BTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCccceEE-ecC---C--CCCCCCCC-CCceeeecccccc--cHHHHHHHHHHHHHHHH
Confidence 33344455667888999999877554 432 3 45677765 3466666554332 22222333459999975
No 122
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=40.04 E-value=3.2e+02 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 017701 5 YMEAVVGFMILMYFFETYLDLRQHA 29 (367)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~rq~~ 29 (367)
|..++++..++-..+-.....|..|
T Consensus 25 ~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 25 YFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5567777777777888888888888
No 123
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=39.36 E-value=19 Score=33.95 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHH
Q 017701 275 DEEIVAVIAHELGH 288 (367)
Q Consensus 275 ~~El~aVlaHElgH 288 (367)
+-|++.|+||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 67899999999999
No 124
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=38.90 E-value=24 Score=31.19 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.0
Q ss_pred hCCCHHHHHHHHHHHHHHhhhccHH
Q 017701 271 QCKNDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 271 ~l~~~~El~aVlaHElgH~k~~h~~ 295 (367)
.+++++|=.++++|++||+...|-.
T Consensus 125 ~l~~d~e~~s~v~~~lA~Fy~~~r~ 149 (182)
T PF06861_consen 125 NLLNDHENASLVSHALAHFYLRYRR 149 (182)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHH
Confidence 3459999999999999999877743
No 125
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.15 E-value=3.7e+02 Score=26.85 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017701 140 FNKQTIWLFFRDMIKGMILAIVLGPPIV 167 (367)
Q Consensus 140 f~~~t~~~~~~d~~k~~~l~~vl~~~l~ 167 (367)
|+-+|...+++..+|..+++.+....+-
T Consensus 138 Fs~~~~vEllKsllKi~~v~~v~~~~l~ 165 (363)
T COG1377 138 FSLQTLVELLKSLLKIVLVGLVAYFVLK 165 (363)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777666555444
No 126
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=37.30 E-value=4.2e+02 Score=26.21 Aligned_cols=27 Identities=11% Similarity=0.383 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 017701 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~~ 242 (367)
||+++.+++++.++. ++|..++.+.|-
T Consensus 230 dP~iK~rrR~~~re~a~~~m~~~V~~AdVVItNP 263 (347)
T TIGR00328 230 DPEVKGRIRQMQREAARRRMMQEVPKADVVITNP 263 (347)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECC
Confidence 578888887777643 456667888773
No 127
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=36.91 E-value=18 Score=33.03 Aligned_cols=19 Identities=32% Similarity=0.181 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 017701 272 CKNDEEIVAVIAHELGHWKL 291 (367)
Q Consensus 272 l~~~~El~aVlaHElgH~k~ 291 (367)
| +..-..+|+|||++|.-.
T Consensus 88 L-Prll~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 88 L-PRLLTGSILAHELMHAWL 106 (212)
T ss_pred C-CHHHHhhHHHHHHHHHHh
Confidence 5 666679999999999763
No 128
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=36.79 E-value=2.5e+02 Score=23.41 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhHHHHHhhhccCCcCChhHHHHHHHHHHHHcC-CC
Q 017701 189 MFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLK-FP 233 (367)
Q Consensus 189 ~~~~~~~~~~~~p~~i~pl~~~~~pl~~~~L~~~i~~l~~~~g-~~ 233 (367)
.++..++..++.+.++.++.+ -+| |.-+++.++...++.| +.
T Consensus 58 ~ll~~~~~v~~gg~~l~rlKR-GKP--~~yl~r~l~~~l~~~g~l~ 100 (121)
T PF11990_consen 58 ALLGPILGVFVGGKLLARLKR-GKP--EGYLYRRLQWRLARRGPLG 100 (121)
T ss_pred HHHHHHHHHHHhHHHHHHHHc-CCc--hhHHHHHHHHHHHHhcccC
Confidence 333445556667777777653 454 6789999998888876 44
No 129
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=36.70 E-value=22 Score=32.96 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhh
Q 017701 277 EIVAVIAHELGHWK 290 (367)
Q Consensus 277 El~aVlaHElgH~k 290 (367)
=..+|+.||+||..
T Consensus 52 l~~~v~iHElgH~~ 65 (227)
T cd06164 52 LFASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 45789999999974
No 130
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=36.55 E-value=22 Score=37.92 Aligned_cols=28 Identities=43% Similarity=0.399 Sum_probs=18.8
Q ss_pred EEEchhHHhhCCCHHHHHHHHHHHHHHhhhc
Q 017701 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 262 Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (367)
.+.+++++. .+.+...|+|||++|-=-+
T Consensus 266 tf~~~~ll~---~d~s~~~viaHElAHqWfG 293 (601)
T TIGR02411 266 TFATPTLIA---GDRSNVDVIAHELAHSWSG 293 (601)
T ss_pred eeecccccc---CChhhhhhHHHHHHhhccC
Confidence 445555553 3445678999999997554
No 131
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=36.55 E-value=8.4 Score=36.94 Aligned_cols=12 Identities=75% Similarity=0.905 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhh
Q 017701 279 VAVIAHELGHWK 290 (367)
Q Consensus 279 ~aVlaHElgH~k 290 (367)
.+|++||+||.-
T Consensus 166 igv~~HE~gH~l 177 (286)
T TIGR03296 166 VGVIAHELGHDL 177 (286)
T ss_pred eeeeehhhhccc
Confidence 599999999953
No 132
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=36.39 E-value=54 Score=23.07 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhHH
Q 017701 178 GPYLAIYLWAFMFVLSLVMMTLYPV 202 (367)
Q Consensus 178 g~~~~l~~~~~~~~~~~~~~~~~p~ 202 (367)
.+.||+++....++++++-.+.+|.
T Consensus 20 lP~ww~~~f~~tivfa~~Y~~~yp~ 44 (51)
T PF14715_consen 20 LPRWWLWLFYGTIVFAVGYLVLYPG 44 (51)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888888888888887777774
No 133
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=36.34 E-value=2e+02 Score=22.73 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=24.0
Q ss_pred hheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcC
Q 017701 131 TFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIII-IVQKGG 178 (367)
Q Consensus 131 ~f~le~~~Gf~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~-l~~~~g 178 (367)
.|.+.+++-|+.+..... .++.....+..+++.++-.+..+ +.+..+
T Consensus 43 ~f~ln~~~tF~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 90 (117)
T PF04138_consen 43 NFILNRRFTFRSRGRSSR-WRQFLRFFVVYLLGLLLNTLILWLLVDWLG 90 (117)
T ss_pred HHHHHHHHhccCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445666666655555444 44444444445555555555444 344443
No 134
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=36.01 E-value=22 Score=32.18 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 017701 275 DEEIVAVIAHELGHWK 290 (367)
Q Consensus 275 ~~El~aVlaHElgH~k 290 (367)
+-.+..+..||+||.-
T Consensus 19 ~~~~l~t~~HE~gHal 34 (200)
T PF13398_consen 19 PFRLLVTFVHELGHAL 34 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456789999999974
No 135
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=35.79 E-value=62 Score=30.89 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHH
Q 017701 179 PYLAIYLWAFMFVLSLVMMTLYPVL 203 (367)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~~~p~~ 203 (367)
+.||+|++.+.++++++-++.||.+
T Consensus 27 P~ww~~~f~~~i~~~~~y~~~yp~~ 51 (285)
T TIGR00782 27 PRWWLWTFYATIVWGFGYLVAYPAW 51 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5677777777777777766666643
No 136
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.77 E-value=2.5e+02 Score=23.11 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHhhhHHHHHhhhccCCcCChhHHHHHHHHHHHHcCCC
Q 017701 194 LVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFP 233 (367)
Q Consensus 194 ~~~~~~~p~~i~pl~~~~~pl~~~~L~~~i~~l~~~~g~~ 233 (367)
++..++.+.+++.+.+ -+| |.-+.++++...++.++.
T Consensus 60 ~l~v~~gg~~l~rlKR-GrP--e~yl~r~l~~~~~~~~l~ 96 (111)
T TIGR03750 60 ILVVLIGGKLLARLKR-GKP--EGYLYRKLEWKLARLGLG 96 (111)
T ss_pred HHHHHHhHHHHHHHHc-CCC--chHHHHHHHHHHHHcCCC
Confidence 4445667777777653 454 788999999988888865
No 137
>PRK09108 type III secretion system protein HrcU; Validated
Probab=35.72 E-value=4.5e+02 Score=26.08 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 017701 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~~ 242 (367)
||+++.+++++.++. +.|..++.+.|-
T Consensus 232 dP~iK~rrRq~~re~a~~~m~~~V~~AdvVItNP 265 (353)
T PRK09108 232 DPHIKGERKRLARELAFAPPRQRVARANVVVVNP 265 (353)
T ss_pred CHHHHHHHHHHHHHHHHhHHhccCCCCcEEEECC
Confidence 588888888776642 455567888773
No 138
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=34.49 E-value=72 Score=35.56 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHcCCCC--Cc-EEEEeCCCCCCCcceEEeccCCCCEEEEc-hhHHhhCCCHHHHHHHHHHHHHHhhhc
Q 017701 217 GELREKIEKLASSLKFPL--KK-LFVVDGSTRSSHSNAYMYGFFKNKRIVLY-DTLIQQCKNDEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~--~~-i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~-~~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (367)
+++++.++-.-+..|.|. ++ +.-++...--..-|.-...+ ..+.+... ++.-+. +-+.++.|+|||++|-=.+
T Consensus 245 ~~~~~~~~~~e~~fg~~y~l~~~~V~v~~f~~GaMEN~Gl~tf-~~~~ll~~~~~at~~--~~~~~~~viaHElaHqWfG 321 (859)
T COG0308 245 DETKRSIEFYEEYFGLPYALPIDIVAVPDFSAGAMENWGLVTF-REKYLLADPETATDS--DYENVEEVIAHELAHQWFG 321 (859)
T ss_pred HHHHHHhhhHHHhcCCCCCCcccEEeccCCCCccccccceeEE-eeeEEeeCcccchhH--HHHHHHHHHHHHHhhhccc
Confidence 455566666666778764 32 22222211111123322222 22333332 222221 3366778999999997666
Q ss_pred cHH
Q 017701 293 HTM 295 (367)
Q Consensus 293 h~~ 295 (367)
+..
T Consensus 322 nlV 324 (859)
T COG0308 322 NLV 324 (859)
T ss_pred cee
Confidence 543
No 139
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=34.25 E-value=2.4e+02 Score=27.02 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=14.3
Q ss_pred HHHHHHH----HHHHHcCCCCCcEEEE
Q 017701 218 ELREKIE----KLASSLKFPLKKLFVV 240 (367)
Q Consensus 218 ~L~~~i~----~l~~~~g~~~~~i~v~ 240 (367)
|+++.++ +..+|.|++..+.|+-
T Consensus 230 el~q~ies~~~~~v~k~~f~~~~~yvA 256 (314)
T COG3965 230 ELQQSIESHAHEIVEKYGFPSYHVYVA 256 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 5555554 5556778876666654
No 140
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=34.22 E-value=30 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=20.5
Q ss_pred ChhhhccCCHHHHHHHHHhhhhhhh
Q 017701 37 PKTLEGVISQEKFEKSRGYSLDKSH 61 (367)
Q Consensus 37 P~~l~~~~~~e~~~ks~~Y~~~~~~ 61 (367)
|.-+.+.++.|+|+|.|+++++...
T Consensus 24 pi~~~Pmm~~eeYk~~Q~~nR~gI~ 48 (58)
T PF15061_consen 24 PIYFRPMMNPEEYKKEQKINRAGIK 48 (58)
T ss_pred hhhcccccChHHHHHHHHHHHhccc
Confidence 5556778999999999999997643
No 141
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=33.46 E-value=2.3e+02 Score=24.81 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHhhhHH
Q 017701 159 AIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSL-VMMTLYPV 202 (367)
Q Consensus 159 ~~vl~~~l~~~~~~l~~~~g~~~~l~~~~~~~~~~~-~~~~~~p~ 202 (367)
..++..++.++..+......+.|+.+..++.+++.. +..++.|.
T Consensus 26 ~l~Ll~av~~~~~~~~~~~~~~w~~~a~~av~l~~~vv~l~iiP~ 70 (161)
T COG3402 26 ALVLLIAVAAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQ 70 (161)
T ss_pred HHHHHHHHHHHHHHheeccCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 334444555555554444446677777666666543 34566664
No 142
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=33.08 E-value=28 Score=31.21 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhh
Q 017701 276 EEIVAVIAHELGHWK 290 (367)
Q Consensus 276 ~El~aVlaHElgH~k 290 (367)
-=+..+..||+||..
T Consensus 39 ~l~~~l~iHElgH~~ 53 (183)
T cd06160 39 ALLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678899999975
No 143
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=33.02 E-value=32 Score=37.09 Aligned_cols=44 Identities=32% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCcceEEeccCCCCEEEEchhHHhh----------CCCHHHHHHHHHHHHHHhhhcc
Q 017701 247 SHSNAYMYGFFKNKRIVLYDTLIQQ----------CKNDEEIVAVIAHELGHWKLNH 293 (367)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~----------l~~~~El~aVlaHElgH~k~~h 293 (367)
...||+-. +.+..|++.-++++. + +=.-+..|||||++|--..+
T Consensus 480 ~~~na~Y~--~~~N~i~~pa~ilq~P~f~~~~P~~~-nyg~iG~vigHEl~H~FD~~ 533 (687)
T KOG3624|consen 480 AQVNAFYS--PEKNEIVFPAGLLQPPFFDLSYPDYL-NYGGIGFVIGHELTHGFDDQ 533 (687)
T ss_pred ceeecccc--CCCceEEEehhcccCCCCCcccchhh-hhHHHHHHHHHHHhhccccc
Confidence 34566543 345788888887764 4 45568899999999976444
No 144
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=32.93 E-value=26 Score=33.29 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhh
Q 017701 277 EIVAVIAHELGHWK 290 (367)
Q Consensus 277 El~aVlaHElgH~k 290 (367)
=..+|+.||+||..
T Consensus 117 L~isv~iHElgHa~ 130 (263)
T cd06159 117 LVVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 35679999999975
No 145
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.89 E-value=67 Score=31.63 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHHHcCCCCCcEEE-EeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhh
Q 017701 215 PEGELREKIEKLASSLKFPLKKLFV-VDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (367)
Q Consensus 215 ~~~~L~~~i~~l~~~~g~~~~~i~v-~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~ 291 (367)
+.+.+-+.++++..+.|++.+++.. +++ ++-. .|.|-++++ + +++|++.-+-||.+|+.-
T Consensus 56 d~~av~~~Lk~ala~~gi~~k~aa~AVP~-------s~ai-----tk~i~vp~~----l-de~eL~~~V~~ea~~y~P 116 (354)
T COG4972 56 DYDAVASALKRALAKLGIKSKNAATAVPG-------SAAI-----TKTIPVPDE----L-DEKELEDQVESEASRYIP 116 (354)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCc-------ccee-----eEEeccCCc----c-cHHHHHHHHHHHHhhcCC
Confidence 3467888999999999998665433 111 1221 356666665 6 999999999999999864
No 146
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=32.74 E-value=5.8e+02 Score=27.37 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 017701 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~~ 242 (367)
||++|.+++++.++. ++|..++.+.|-
T Consensus 493 dP~iK~r~R~~~re~~~~~m~~~V~~AdvVitNP 526 (609)
T PRK12772 493 DPQIKAKIKQKQREMAMQRMMQEVPKATVVVTNP 526 (609)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEECC
Confidence 688888888777653 455567888773
No 147
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=32.51 E-value=3.5e+02 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCCc
Q 017701 168 SAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTP 213 (367)
Q Consensus 168 ~~~~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~p~~i~pl~~~~~p 213 (367)
++.+....+.+.+.++...+. ++++++.....-..+.+.+++-||
T Consensus 61 ~~~~~~~~r~~~k~~l~l~~~-l~~~i~~~~~~k~~iK~~~~epRP 105 (244)
T PRK10699 61 CGWFLWCLRFRLKAALVLFAI-LAAAILVGQGVKSWIKERVQEPRP 105 (244)
T ss_pred HHHHHHHHHhchhHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCc
Confidence 333334444556666654433 333333333335678889988888
No 148
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=31.91 E-value=26 Score=33.20 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHhhhccHH
Q 017701 274 NDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 274 ~~~El~aVlaHElgH~k~~h~~ 295 (367)
+.+.--+.++||+|||..+-..
T Consensus 199 da~~yyaTl~HElghwtgh~~r 220 (316)
T COG4227 199 DAINYYATLLHELGHWTGHEAR 220 (316)
T ss_pred chHhHHHHHHHHhccccCchhh
Confidence 7788899999999999865443
No 149
>COG5504 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=31.91 E-value=32 Score=32.43 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=21.4
Q ss_pred CCEEEEchhHHhhCCCHHHHHHHHHHHHHHhhh
Q 017701 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (367)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH~k~ 291 (367)
.+.|+++-. ... |..++.|.+|||.-|..+
T Consensus 124 ~~ki~l~l~--p~~-~~~~v~aliaHE~HH~~R 153 (280)
T COG5504 124 PGKIMLWLV--PSS-TITSVPALIAHEYHHNCR 153 (280)
T ss_pred CceEEEEEe--cCC-CccchHHHHHHHHHhhhe
Confidence 345555532 225 889999999999999764
No 150
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=31.24 E-value=28 Score=33.14 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q 017701 275 DEEIVAVIAHELGHW 289 (367)
Q Consensus 275 ~~El~aVlaHElgH~ 289 (367)
.+.-..|+.||+||-
T Consensus 213 ~~~~~~v~vHE~GHs 227 (264)
T PF09471_consen 213 NPSFKQVVVHEFGHS 227 (264)
T ss_dssp STTHHHHHHHHHHHH
T ss_pred cccccceeeeecccc
Confidence 347889999999994
No 151
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=30.94 E-value=1.6e+02 Score=21.01 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=19.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017701 137 RHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQK 176 (367)
Q Consensus 137 ~~Gf~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~ 176 (367)
..|++. .|+..++++..++..+..|+...+--++++
T Consensus 19 n~G~~~----~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~k 54 (60)
T PF11391_consen 19 NVGFSD----GFFSRWLKAWLIAWPVAFPISLIVAPLVRK 54 (60)
T ss_pred HhCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457765 455555556566555555555554444443
No 152
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=30.77 E-value=30 Score=33.18 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhc
Q 017701 277 EIVAVIAHELGHWKLN 292 (367)
Q Consensus 277 El~aVlaHElgH~k~~ 292 (367)
=+.+|+.||+||..--
T Consensus 134 l~isvvvHElgHal~A 149 (277)
T cd06162 134 LLISGVVHEMGHGVAA 149 (277)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3678999999998643
No 153
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=30.25 E-value=2.6e+02 Score=21.63 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=29.3
Q ss_pred hheeccccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017701 131 TFVIEARHGFNKQTI-WLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 175 (367)
Q Consensus 131 ~f~le~~~Gf~~~t~-~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~ 175 (367)
++.+-+.-|+++... +.++.+.+....++.+++.++.........
T Consensus 29 ~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~ 74 (121)
T PF02687_consen 29 EIAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLI 74 (121)
T ss_pred HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445568865554 567777777777777777777666665544
No 154
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=29.22 E-value=42 Score=33.50 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 017701 274 NDEEIVAVIAHELGHWKLN 292 (367)
Q Consensus 274 ~~~El~aVlaHElgH~k~~ 292 (367)
+.+.+.+.||||+-|..|-
T Consensus 135 ~~~~~~sTlAHEfQHmInf 153 (366)
T PF10460_consen 135 GPDTVYSTLAHEFQHMINF 153 (366)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998753
No 155
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=28.91 E-value=8.9 Score=35.56 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=21.1
Q ss_pred EEEEchhHHhhC-CCHHHHHHHHHHHHHHhh-hccHHHH
Q 017701 261 RIVLYDTLIQQC-KNDEEIVAVIAHELGHWK-LNHTMYS 297 (367)
Q Consensus 261 ~Ivl~~~Ll~~l-~~~~El~aVlaHElgH~k-~~h~~~~ 297 (367)
.|++....+..- .++....-++.||+|||- ..|++..
T Consensus 119 Gvvi~~~~~~~~~~~~~n~g~t~~HEvGH~lGL~HtF~~ 157 (225)
T cd04275 119 GVVINPSSLPGGSAAPYNLGDTATHEVGHWLGLYHTFQG 157 (225)
T ss_pred eEEEeccccCCCCcccccccceeEEeccceeeeeeeecC
Confidence 455544433322 013355678999999996 4555443
No 156
>COG3305 Predicted membrane protein [Function unknown]
Probab=28.34 E-value=3.3e+02 Score=23.12 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhccccHhhhhhhe
Q 017701 106 LHTLSFLAGVMLWSQLTDLPFSLYSTFV 133 (367)
Q Consensus 106 ~~~~~f~~~~~l~~~~~~lPf~~Y~~f~ 133 (367)
|+...+.=.+.++++.+.|||+.|.-+.
T Consensus 90 W~~k~W~e~fa~vs~aIyLPfeVy~l~~ 117 (152)
T COG3305 90 WLLKRWGEYFAVVSTAIYLPFEVYDLAK 117 (152)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHc
Confidence 4444555567788999999999997763
No 157
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=27.46 E-value=1.6e+02 Score=21.86 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=25.8
Q ss_pred EEeccC-CCCEEEEchhHHhhCCCHHHHHHHHH
Q 017701 252 YMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIA 283 (367)
Q Consensus 252 ~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~aVla 283 (367)
...|.+ ..+.+.+++.....+ +++.+..++.
T Consensus 39 ~ClG~C~~gP~v~V~~~~~~~~-t~~~i~~~~~ 70 (72)
T cd03082 39 PCVGRCERAPAALVGQRPVDGA-TPAAVAAAVE 70 (72)
T ss_pred CcCCccCCCCeEEECCEEeCCc-CHHHHHHHHh
Confidence 577764 678999999999999 9999988764
No 158
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=27.16 E-value=17 Score=36.23 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=37.7
Q ss_pred EEEEeCCCCCCCcceEEe----ccCCCCEEEEchhHH---hhCCCHHHHHHHHHHHHHHhhhccHHH
Q 017701 237 LFVVDGSTRSSHSNAYMY----GFFKNKRIVLYDTLI---QQCKNDEEIVAVIAHELGHWKLNHTMY 296 (367)
Q Consensus 237 i~v~~~s~rs~~~NA~~~----G~~~~~~Ivl~~~Ll---~~l~~~~El~aVlaHElgH~k~~h~~~ 296 (367)
-.+.+..+.+..-||.+. |.+++-++++.++-- -.- +-+.=..|++||.||-..+...-
T Consensus 138 ~V~a~aQDgsg~NNAnf~TPpDG~~prMqMylw~~~~~~~p~r-Dg~~D~~Ii~HEy~HGiSnRLvg 203 (378)
T PF02128_consen 138 AVIAEAQDGSGTNNANFATPPDGQPPRMQMYLWTPSTPASPNR-DGDFDNGIIAHEYGHGISNRLVG 203 (378)
T ss_pred eEEEEeccCCCcCCceeecCCCCCCceeeEEEecCCCCcCCCC-CcccccCeeEEeecccccccccC
Confidence 334444444567788876 444566788877644 222 44555789999999988766544
No 159
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.76 E-value=82 Score=31.23 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=40.4
Q ss_pred hhccCCcCChhHHHHHHHH----HHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHH
Q 017701 207 LFNKFTPLPEGELREKIEK----LASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVI 282 (367)
Q Consensus 207 l~~~~~pl~~~~L~~~i~~----l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVl 282 (367)
+..+-++.+++|+....+. +.++.+- .-++|.-+.. +-..-|.+-|= .-+++.+....+ + +++++.+++
T Consensus 178 L~~~~k~~e~~E~~~~~qa~~~~v~k~~e~-~i~~~~~~~~--g~~Ara~v~~d-~pp~lli~~~t~--~-~~~~V~~Ll 250 (434)
T COG3930 178 LKDEPKTLEAKEVVPILQADLNTVFKEEEE-MIRVYESDTA--GFVARAEVRDD-LPPTLLIRRDTL--M-EERRVRALL 250 (434)
T ss_pred HhhCCccccccccchHHHHHHHHHHHHhhh-eeeeeecCcc--chhhhHhhcCC-CCcceeehhhhh--c-CHHHHHHHH
Confidence 3456667777776544332 2232221 1245554421 12223333331 124666766544 5 899999999
Q ss_pred HHHHHH
Q 017701 283 AHELGH 288 (367)
Q Consensus 283 aHElgH 288 (367)
.||+|-
T Consensus 251 ~HEigV 256 (434)
T COG3930 251 SHEIGV 256 (434)
T ss_pred Hhhhhe
Confidence 999984
No 160
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=26.72 E-value=44 Score=34.28 Aligned_cols=21 Identities=24% Similarity=0.331 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhccH
Q 017701 272 CKNDEEIVAVIAHELGHWKLNHT 294 (367)
Q Consensus 272 l~~~~El~aVlaHElgH~k~~h~ 294 (367)
| +.+|+. .++||+||.-|+-.
T Consensus 244 L-~~~~v~-TLfHEfGHalH~~l 264 (458)
T cd06457 244 L-SPHEVE-TLFHEMGHAMHSML 264 (458)
T ss_pred c-CHHHHH-HHHHHHhHHHHHHH
Confidence 5 788887 68999999988544
No 161
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.99 E-value=6.6e+02 Score=24.96 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 017701 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (367)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~~ 242 (367)
||+++.+++++.++. ++|..++.+.|-
T Consensus 237 dP~iK~rrR~~~re~a~~~m~~~V~~AdVVItNP 270 (359)
T PRK05702 237 DPEVKGRIRQLQREMARRRMMAAVPKADVVITNP 270 (359)
T ss_pred CHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEECC
Confidence 688888888777653 456667888773
No 162
>PRK00523 hypothetical protein; Provisional
Probab=25.63 E-value=89 Score=23.65 Aligned_cols=13 Identities=8% Similarity=-0.059 Sum_probs=7.8
Q ss_pred HHHHHHHHcCCCC
Q 017701 222 KIEKLASSLKFPL 234 (367)
Q Consensus 222 ~i~~l~~~~g~~~ 234 (367)
.++.+..+.|-++
T Consensus 44 mir~M~~QMGqKP 56 (72)
T PRK00523 44 MIRAMYMQMGRKP 56 (72)
T ss_pred HHHHHHHHhCCCc
Confidence 4555666666654
No 163
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=25.55 E-value=3.1e+02 Score=24.30 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.1
Q ss_pred HHhhhccCCcCChhHHHHHHHHHH
Q 017701 204 IAPLFNKFTPLPEGELREKIEKLA 227 (367)
Q Consensus 204 i~pl~~~~~pl~~~~L~~~i~~l~ 227 (367)
.+|.-++-+|++++|.+++.+..+
T Consensus 118 ~APv~~~~kpi~~~e~~k~lk~~s 141 (184)
T smart00793 118 YAPADTEKQPVIPEKLKKKLKKKS 141 (184)
T ss_pred cCCcccccCCCCCHHHHHHHHHHH
Confidence 468888999999888877665443
No 164
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=25.50 E-value=32 Score=30.78 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhh
Q 017701 279 VAVIAHELGHWK 290 (367)
Q Consensus 279 ~aVlaHElgH~k 290 (367)
.+++.||+||.-
T Consensus 78 ~G~i~HEl~HaL 89 (182)
T cd04283 78 KGIIQHELLHAL 89 (182)
T ss_pred cchHHHHHHHHh
Confidence 589999999975
No 165
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=25.40 E-value=1.2e+02 Score=26.04 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=25.2
Q ss_pred CcceEEeccCCCCEEEEchhHHhhC-CCHHHHHHHHHHHHHHh
Q 017701 248 HSNAYMYGFFKNKRIVLYDTLIQQC-KNDEEIVAVIAHELGHW 289 (367)
Q Consensus 248 ~~NA~~~G~~~~~~Ivl~~~Ll~~l-~~~~El~aVlaHElgH~ 289 (367)
..-|++..-.+...|.|-....+.- ...+--++.|.||+.|+
T Consensus 65 ~~~a~~~~~~~~~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf 107 (148)
T PF14521_consen 65 NTYAYVYPDSPTYTIYLCPAFFSAPTTGKDSKEGTLIHEWSHF 107 (148)
T ss_dssp SSSEEE-TTST-TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHS
T ss_pred ceEEEEECCCCceEEEEChhhcCCCCCCCCchHHHHHHhhhhh
Confidence 3344444322335799998877742 14467899999999993
No 166
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=24.93 E-value=33 Score=31.18 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhh
Q 017701 279 VAVIAHELGHWK 290 (367)
Q Consensus 279 ~aVlaHElgH~k 290 (367)
.+++.||++|.-
T Consensus 88 ~Gti~HEl~HaL 99 (200)
T cd04281 88 FGIVVHELGHVI 99 (200)
T ss_pred CchHHHHHHHHh
Confidence 589999999975
No 167
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=24.82 E-value=43 Score=29.99 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHcCCCC------C-cEEEEeCCCCCCCcceEEeccC-CCCEEEEchhHHhhCCCHHHHHHHHHHHHHH
Q 017701 217 GELREKIEKLASSLKFPL------K-KLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGH 288 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~------~-~i~v~~~s~rs~~~NA~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH 288 (367)
..+++.++.+.+...++. . +...... ....--..|.. ....|.|.+ .+ . -.+++.||+||
T Consensus 22 ~~I~~Am~~~e~~TcI~F~~~~~~~~~~i~~~~----~~gC~S~vG~~~g~q~i~l~~----~c-~---~~~~i~HEl~H 89 (191)
T PF01400_consen 22 QRIRKAMDEWEKNTCIRFVERTENEDDYISFSN----GSGCWSYVGRQGGEQTINLGD----GC-F---SVGTILHELGH 89 (191)
T ss_dssp HHHHHHHHHHHHHSSEEEEE-SSSSSSEEEEES----SSSEEEESS--SSEEEEEE-T----TC-----SHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCceEEEeec----CccccchhhhcCcceeEEecc----ee-C---CccchHHHHHH
Confidence 456777777777655431 1 1222221 12222223432 233555553 34 2 34799999999
Q ss_pred hh
Q 017701 289 WK 290 (367)
Q Consensus 289 ~k 290 (367)
.-
T Consensus 90 aL 91 (191)
T PF01400_consen 90 AL 91 (191)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 168
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=24.20 E-value=47 Score=29.55 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhh
Q 017701 278 IVAVIAHELGHWK 290 (367)
Q Consensus 278 l~aVlaHElgH~k 290 (367)
+-++..||+||-.
T Consensus 9 ~~~i~~HE~aHa~ 21 (181)
T cd06158 9 LLAITLHEFAHAY 21 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 4588999999976
No 169
>PRK11767 SpoVR family protein; Provisional
Probab=24.18 E-value=91 Score=32.35 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHcCCCC--CcEEEEeCCCCCCCcceEE-------------------------eccCCC-CEEEEchh-
Q 017701 217 GELREKIEKLASSLKFPL--KKLFVVDGSTRSSHSNAYM-------------------------YGFFKN-KRIVLYDT- 267 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~--~~i~v~~~s~rs~~~NA~~-------------------------~G~~~~-~~Ivl~~~- 267 (367)
++..++|+++|++.|+.. .++-|++.. ...+|++ .|..+. --|||++.
T Consensus 18 ~~~~~~I~~iA~~~GLD~yp~~~EIi~~e---qml~~~as~GmP~rY~HWsfGk~y~~~~~~Y~~gl~glaYEiVINSnP 94 (498)
T PRK11767 18 QRYLDEIERVAKEYGLDTYPNQIEVITAE---QMMDAYSSVGMPINYRHWSFGKHFIETEQLYRRGQMGLAYEIVINSNP 94 (498)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEECHH---HHHHHHHhcCCCCCCCcccccHHHHHHHHHHhcCCCCCceEEEecCch
Confidence 344678899999999873 345555431 1223332 232212 34777644
Q ss_pred ----HHhhCCCHHHHHHHHHH-HHHHh---hhccHHHH
Q 017701 268 ----LIQQCKNDEEIVAVIAH-ELGHW---KLNHTMYS 297 (367)
Q Consensus 268 ----Ll~~l~~~~El~aVlaH-ElgH~---k~~h~~~~ 297 (367)
|++.- |.-.=+-|+|| ++||. |++..++.
T Consensus 95 ciAyLme~N-tl~~q~LViAHv~yGHndFFKNN~~F~~ 131 (498)
T PRK11767 95 CIAYLMEEN-TMTMQALVIAHACYGHNSFFKNNYLFRT 131 (498)
T ss_pred HHHHHhccC-cHHHHHHHHHHHHHhhhhhhhccHHhhC
Confidence 45555 77888899999 69995 56665554
No 170
>PRK09110 flagellar motor protein MotA; Validated
Probab=24.14 E-value=6.4e+02 Score=24.17 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHhhhccH
Q 017701 272 CKNDEEIVAVIAHELGHWKLNHT 294 (367)
Q Consensus 272 l~~~~El~aVlaHElgH~k~~h~ 294 (367)
. +++|++.++-.|+....++|.
T Consensus 138 ~-~~~~i~~iLe~ei~~~~~~~~ 159 (283)
T PRK09110 138 M-NPHEIEALMDEEIETHHHEAE 159 (283)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHH
Confidence 5 899999999999997777754
No 171
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=23.92 E-value=44 Score=37.32 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhccHH
Q 017701 275 DEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 275 ~~El~aVlaHElgH~k~~h~~ 295 (367)
.+.++-|+|||++|-=-+...
T Consensus 321 k~~va~vIaHElAHQWFGNLV 341 (882)
T KOG1046|consen 321 KQRVAEVIAHELAHQWFGNLV 341 (882)
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 566999999999998766543
No 172
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=23.90 E-value=47 Score=26.54 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhccccHhhhhhheec
Q 017701 110 SFLAGVMLWSQLTDLPFSLYSTFVIE 135 (367)
Q Consensus 110 ~f~~~~~l~~~~~~lPf~~Y~~f~le 135 (367)
=++..++.++.++++|+++|-++.+.
T Consensus 44 ~~l~~i~I~~~IlS~~~SfYv~~kL~ 69 (95)
T PF06836_consen 44 KYLAIIAIISFILSFFFSFYVDYKLK 69 (95)
T ss_pred HHHHHHHHHHHHHHhHhheeEeeEec
Confidence 34667888999999999999999985
No 173
>PRK00523 hypothetical protein; Provisional
Probab=23.56 E-value=2.4e+02 Score=21.35 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 017701 8 AVVGFMILMYFFETYLDLRQHAALKLPKLP 37 (367)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~rq~~~~~~~~~P 37 (367)
+++..+++..+.-.|+..|+.+.+.+.++|
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~~NPp 39 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 334445666677779999999988776666
No 174
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=23.20 E-value=5e+02 Score=22.58 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHcCC-CCCcEEEE
Q 017701 217 GELREKIEKLASSLKF-PLKKLFVV 240 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~-~~~~i~v~ 240 (367)
++.++.++++.++-|- ..-+||-+
T Consensus 126 ~~~K~~i~~i~~~Kgei~FYDVy~l 150 (155)
T PF10777_consen 126 DEIKQGIQRIISTKGEISFYDVYSL 150 (155)
T ss_pred HHHHHHHHHHHHhCCceeEEEeEEe
Confidence 5677777777766442 23355544
No 175
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=23.20 E-value=3.8e+02 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=16.5
Q ss_pred HHhhhccCCcCChhHHHHHHHH
Q 017701 204 IAPLFNKFTPLPEGELREKIEK 225 (367)
Q Consensus 204 i~pl~~~~~pl~~~~L~~~i~~ 225 (367)
.+|.-++-+|+.+++.++..+.
T Consensus 130 yAP~dt~nkPi~~~~~rk~lK~ 151 (210)
T PRK01100 130 YAPADTESLPLIGEKLRKTLKR 151 (210)
T ss_pred cCCcCCccCCCCCHHHHHHHHH
Confidence 3677888999988887776543
No 176
>PRK10911 oligopeptidase A; Provisional
Probab=22.98 E-value=54 Score=35.52 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHhhhccHH
Q 017701 274 NDEEIVAVIAHELGHWKLNHTM 295 (367)
Q Consensus 274 ~~~El~aVlaHElgH~k~~h~~ 295 (367)
+.+|+. .+.||+||.-|+..-
T Consensus 460 ~~~~v~-tlfHEfGHalH~~ls 480 (680)
T PRK10911 460 THDEVI-TLFHEFGHGLHHMLT 480 (680)
T ss_pred CHHHHH-HHHHHHhHHHHHHHh
Confidence 668886 789999999875543
No 177
>PHA02564 V virion protein; Provisional
Probab=22.91 E-value=1.2e+02 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=23.7
Q ss_pred hhccCCcCChhHHHHHHHHHHHHcCCCCC
Q 017701 207 LFNKFTPLPEGELREKIEKLASSLKFPLK 235 (367)
Q Consensus 207 l~~~~~pl~~~~L~~~i~~l~~~~g~~~~ 235 (367)
+.+++.|-.|.+-...+..+|+++|++++
T Consensus 72 iI~rwAP~~ENnT~aYi~~Vs~~~GV~~~ 100 (141)
T PHA02564 72 LIARWAPSNENDTRAYATAVANAMGVPPQ 100 (141)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHCCCCC
Confidence 44678888788888899999999998754
No 178
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=22.69 E-value=3.5e+02 Score=25.06 Aligned_cols=118 Identities=20% Similarity=0.347 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHhccccHhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH----
Q 017701 106 LHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYL---- 181 (367)
Q Consensus 106 ~~~~~f~~~~~l~~~~~~lPf~~Y~~f~le~~~Gf~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~~g~~~---- 181 (367)
++.+.--+-.+.+++++.+|....-.|.+.++.+.-| ..+-+++.--.+..|.+.+.+-++-. |++-
T Consensus 6 ~~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~~~k--------~ll~~lv~LPLVLPPtV~G~~LLi~f-gr~g~iG~ 76 (225)
T COG4149 6 LTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGK--------SLLESLVLLPLVLPPVVLGFLLLVLF-GRNGFIGQ 76 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcc--------hHHHHHHHccccCCchHHHHHHHHHH-cCcCchHH
Confidence 3333334556667777777777777777776655332 23333333323333434333332222 2221
Q ss_pred HHHHH-HHHHHH------HHHHHhhhHHHHHhhhccCCcCChhHHHHHHHHHHHHcCCCCCcE
Q 017701 182 AIYLW-AFMFVL------SLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKL 237 (367)
Q Consensus 182 ~l~~~-~~~~~~------~~~~~~~~p~~i~pl~~~~~pl~~~~L~~~i~~l~~~~g~~~~~i 237 (367)
+++-| +..++| .--.....|.+.+|+-+.++.++ +++++.++..|-.+.++
T Consensus 77 ~l~~~~g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id-----~~le~aA~tlGas~~~v 134 (225)
T COG4149 77 FLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAID-----RELEEAARTLGASRWEV 134 (225)
T ss_pred HHHHHcCCcEEEeeHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hhHHHHHHHcCCChhhh
Confidence 11110 010111 11123446888888776666553 34566777777654433
No 179
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.68 E-value=1.6e+02 Score=24.67 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEeccCCCCEEEEchhHHhhCCCHHHHHHHHHHHHHH
Q 017701 218 ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGH 288 (367)
Q Consensus 218 ~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH 288 (367)
+....+.+.+++.++|..++++=.. . . .| .|+- -..-.+-...+.++ +.||+.+.+.+|-.|
T Consensus 64 ~~~~~t~~wL~k~~ipYd~l~~~kp-~--~-~~---~~~~-~dD~~ir~~~~~~~-~~~~~~~~~~~~~~~ 125 (126)
T TIGR01689 64 HTLPIIILWLNQHNVPYDEIYVGKP-W--C-GH---DGFY-VDDRAIRPSEFSSL-TYDEINTLTKIDKSC 125 (126)
T ss_pred hhHHHHHHHHHHcCCCCceEEeCCC-c--C-CC---CCce-ecchhhCHHHHHhc-CHHHHHHHHhhcccC
Confidence 3445777888899999888877431 0 0 00 0110 12223344456679 999999999998765
No 180
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=22.06 E-value=98 Score=32.06 Aligned_cols=66 Identities=26% Similarity=0.445 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCC-CCcEEEEeC--CCCCCCcceEEec----cC--CCCEEEEchhHHhhCCCHHHHHHHHHHHHHH
Q 017701 218 ELREKIEKLASSLKFP-LKKLFVVDG--STRSSHSNAYMYG----FF--KNKRIVLYDTLIQQCKNDEEIVAVIAHELGH 288 (367)
Q Consensus 218 ~L~~~i~~l~~~~g~~-~~~i~v~~~--s~rs~~~NA~~~G----~~--~~~~Ivl~~~Ll~~l~~~~El~aVlaHElgH 288 (367)
++.+..++.-+.+|++ .++.+.-++ +|..+. ..++.+ ++ +..+|..... . |.+.+..+. ||+||
T Consensus 185 ~mf~~~~~ff~smgL~dl~~~fw~~s~~~rp~k~-~~~C~~sawd~~~~~d~rI~~c~~----~-t~~D~~t~~-HE~GH 257 (477)
T cd06461 185 RMFKEAEEFFTSLGLPPMPPSFWTKSMLEKPTDR-EVVCHASAWDFYNGKDFRIKMCTK----V-NMEDFVTVH-HEMGH 257 (477)
T ss_pred HHHHHHHHHHHHCCCCcCChHHHhhccccCCCCC-CCccCcccccCCCCCCcceeeCCC----C-CHHHHHHHH-HHHHH
Confidence 3444455566677876 333322111 111122 445554 54 3345544432 3 666666655 99999
Q ss_pred hh
Q 017701 289 WK 290 (367)
Q Consensus 289 ~k 290 (367)
+.
T Consensus 258 ~~ 259 (477)
T cd06461 258 IQ 259 (477)
T ss_pred HH
Confidence 97
No 181
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=22.03 E-value=43 Score=32.65 Aligned_cols=16 Identities=56% Similarity=0.619 Sum_probs=11.6
Q ss_pred HHHHHHHHHhh-hccHH
Q 017701 280 AVIAHELGHWK-LNHTM 295 (367)
Q Consensus 280 aVlaHElgH~k-~~h~~ 295 (367)
+++.||+||=- ..|..
T Consensus 152 ~~~~HElgHN~GL~Ha~ 168 (314)
T PF05548_consen 152 ATIMHELGHNLGLWHAG 168 (314)
T ss_pred HHHHHHhhhhccccccC
Confidence 59999999954 44443
No 182
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=21.87 E-value=4.7e+02 Score=25.16 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHHhccccHhhhhhh
Q 017701 104 EILHTLSFLAGVMLWSQLTDLPFSLYSTF 132 (367)
Q Consensus 104 ~~~~~~~f~~~~~l~~~~~~lPf~~Y~~f 132 (367)
-+++++...+..+++.-++..|+.||-.-
T Consensus 67 v~~~Sl~iA~~~T~~~lligyP~Ay~la~ 95 (287)
T COG1176 67 VLLRSLWIAALVTLICLLLGYPVAYFLAR 95 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888888999999999999999998653
No 183
>PF15639 Tox-MPTase3: Metallopeptidase toxin 3
Probab=21.71 E-value=65 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=27.7
Q ss_pred CCCEEEEchhHHhhCCCHHH---------HHHHHHHHHHHhhhccH
Q 017701 258 KNKRIVLYDTLIQQCKNDEE---------IVAVIAHELGHWKLNHT 294 (367)
Q Consensus 258 ~~~~Ivl~~~Ll~~l~~~~E---------l~aVlaHElgH~k~~h~ 294 (367)
....|-|...++++.++..+ +.+-+.||+-||-+.|.
T Consensus 71 ~~~~i~I~~~lV~~~Ek~~~~~r~~~~~~v~~TlLHEliHw~~~q~ 116 (135)
T PF15639_consen 71 GSQVIRIDGDLVNMFEKGPGERRAGNVYLVGSTLLHELIHWGDDQN 116 (135)
T ss_pred CCcEEEeeHHHhhhhhcCCcccccceEEEeehHHHHHHHHhcchhc
Confidence 45688899999988753332 56778999999987653
No 184
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=21.41 E-value=46 Score=33.74 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=9.3
Q ss_pred HHHHHHHHHhh
Q 017701 280 AVIAHELGHWK 290 (367)
Q Consensus 280 aVlaHElgH~k 290 (367)
.|+-||+||+-
T Consensus 16 ~v~~HE~gH~~ 26 (420)
T TIGR00054 16 LIFVHELGHFL 26 (420)
T ss_pred HHHHHhHHHHH
Confidence 57889999985
No 185
>PRK12482 flagellar motor protein MotA; Provisional
Probab=21.38 E-value=7.4e+02 Score=23.86 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 017701 272 CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (367)
Q Consensus 272 l~~~~El~aVlaHElgH~k~~h~~~~~~~~~ 302 (367)
. ++||++.++-.|+....++|..-.-+...
T Consensus 138 ~-d~~~i~~iLe~eie~~~~r~~~~a~v~~~ 167 (287)
T PRK12482 138 I-NQHELEGILDQELDAVEEELLQPSRSLQR 167 (287)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5 99999999999999888888655444433
No 186
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=21.32 E-value=2.9e+02 Score=27.82 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHhccccHhhhhhheeccccCCCCCCH----------HHHHHHHHHH
Q 017701 106 LHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTI----------WLFFRDMIKG 155 (367)
Q Consensus 106 ~~~~~f~~~~~l~~~~~~lPf~~Y~~f~le~~~Gf~~~t~----------~~~~~d~~k~ 155 (367)
.-.-+|+...+++.-++-.|.-+.-++..||+|.+.+++. ++++.|++..
T Consensus 277 vdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~ 336 (416)
T KOG2765|consen 277 VDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWA 336 (416)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHH
Confidence 3344677888888889999888888877999999977775 5667776543
No 187
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=21.05 E-value=42 Score=29.71 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhh
Q 017701 279 VAVIAHELGHWK 290 (367)
Q Consensus 279 ~aVlaHElgH~k 290 (367)
.+++.||+||.-
T Consensus 75 ~g~v~HE~~Hal 86 (180)
T cd04280 75 LGTIVHELMHAL 86 (180)
T ss_pred CchhHHHHHHHh
Confidence 689999999985
No 188
>PRK01844 hypothetical protein; Provisional
Probab=20.88 E-value=2.9e+02 Score=20.96 Aligned_cols=29 Identities=7% Similarity=-0.030 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 017701 9 VVGFMILMYFFETYLDLRQHAALKLPKLP 37 (367)
Q Consensus 9 ~~~~~~~~~~~~~~l~~rq~~~~~~~~~P 37 (367)
.++.+++..+.-.|+..|+.+.+.+..||
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~NPp 38 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34455566677779999999988777666
No 189
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=20.70 E-value=4.8e+02 Score=21.48 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 017701 149 FRDMIKGMILAIVLG 163 (367)
Q Consensus 149 ~~d~~k~~~l~~vl~ 163 (367)
++.++.+++++.++.
T Consensus 17 ~k~y~iGFvLsIiLT 31 (111)
T COG3125 17 LKSYLIGFVLSIILT 31 (111)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554444
No 190
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=20.54 E-value=44 Score=33.86 Aligned_cols=13 Identities=38% Similarity=0.276 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhh
Q 017701 279 VAVIAHELGHWKL 291 (367)
Q Consensus 279 ~aVlaHElgH~k~ 291 (367)
.++++||++|.-.
T Consensus 160 ~G~i~HEl~HaLG 172 (411)
T KOG3714|consen 160 FGTIVHELMHALG 172 (411)
T ss_pred CchhHHHHHHHhh
Confidence 8999999999864
No 191
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=20.49 E-value=58 Score=22.33 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.8
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 017701 137 RHGFNKQTIWLFFRDMIK 154 (367)
Q Consensus 137 ~~Gf~~~t~~~~~~d~~k 154 (367)
.||||.+|++.+...+-+
T Consensus 25 NYGf~E~tW~~Y~~kq~~ 42 (45)
T PF05182_consen 25 NYGFNEETWREYCKKQRQ 42 (45)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999877643
No 192
>PF04293 SpoVR: SpoVR like protein; InterPro: IPR007390 One of the family members P37875 from SWISSPROT is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation []. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR [].
Probab=20.48 E-value=1.3e+02 Score=30.81 Aligned_cols=77 Identities=27% Similarity=0.333 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHcCCCC-C-cEEEEeCCCCCCCcceE-------------------------EeccCCC-CEEEEchh-
Q 017701 217 GELREKIEKLASSLKFPL-K-KLFVVDGSTRSSHSNAY-------------------------MYGFFKN-KRIVLYDT- 267 (367)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~-~-~i~v~~~s~rs~~~NA~-------------------------~~G~~~~-~~Ivl~~~- 267 (367)
++..+.|+++|++.|+.. | ++-+++.. .-.-++ -.|.++- --+||++.
T Consensus 9 e~~~~~i~~~A~~~GLd~yp~~fEiv~~e---~m~~~~ay~GmP~rY~HWsfGk~y~~~k~~Y~~gl~~laYE~VINs~P 85 (426)
T PF04293_consen 9 ERIIEEIEEIARELGLDFYPVQFEIVPAE---QMYEAYAYVGMPTRYPHWSFGKEYERMKKQYRYGLSKLAYEMVINSNP 85 (426)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEeCHH---HHHHHHHhcCCCCCCchhhccHHHHHHHHHHHccCCCcceEEEECCCc
Confidence 456678888899999864 3 33444321 111111 1233222 34677654
Q ss_pred ----HHhhCCCHHHHHHHHHHHHHHh---hhccHHHH
Q 017701 268 ----LIQQCKNDEEIVAVIAHELGHW---KLNHTMYS 297 (367)
Q Consensus 268 ----Ll~~l~~~~El~aVlaHElgH~---k~~h~~~~ 297 (367)
|++.- |.-+-+.|+||=+||. |++...+.
T Consensus 86 c~AyL~e~N-t~~~q~lViAHV~gH~dFFkNN~~F~~ 121 (426)
T PF04293_consen 86 CIAYLMESN-TLAMQKLVIAHVYGHNDFFKNNYLFRH 121 (426)
T ss_pred hhhhHhccC-cHHHHHHHHHHHHHHHHHHhccHHHhC
Confidence 55555 7888888999999995 45555554
No 193
>PF06173 DUF986: Protein of unknown function (DUF986); InterPro: IPR009328 This family consists of several bacterial putative membrane proteins of unknown function.
Probab=20.28 E-value=5e+02 Score=22.56 Aligned_cols=107 Identities=23% Similarity=0.388 Sum_probs=49.3
Q ss_pred ccccHhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-Hhhh
Q 017701 122 TDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVM-MTLY 200 (367)
Q Consensus 122 ~~lPf~~Y~~f~le~~~Gf~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~~g~~~~l~~~~~~~~~~~~~-~~~~ 200 (367)
..+-+.+|..|..+++.|-..- +..++..-|.= +.++.++++..++.=+..-|+....|.....+.+++.. +.-+
T Consensus 11 ~~l~yaiYdqfim~~~kG~T~L--~V~Lrrr~k~D--a~Ifi~Li~iliy~ni~~~g~~~T~~LL~~l~ll~iYi~fiR~ 86 (149)
T PF06173_consen 11 LFLAYAIYDQFIMDKRKGKTLL--KVRLRRRNKID--ALIFIGLIAILIYNNITQHGEPLTTYLLMALILLAIYIAFIRY 86 (149)
T ss_pred HHHHHHHHHHHhhhccCCCeEE--EEEeEecccee--eehHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHhc
Confidence 3445778999999999984221 12222222110 01111222233344444445555555544444444422 3344
Q ss_pred HHHHHh---hh--ccCCcCChhHHHHHHHHHHHHcCCCCCcEEEEeC
Q 017701 201 PVLIAP---LF--NKFTPLPEGELREKIEKLASSLKFPLKKLFVVDG 242 (367)
Q Consensus 201 p~~i~p---l~--~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~ 242 (367)
|.++-. .| |.+.| +++| ++.++..+++.|++-
T Consensus 87 PkllfK~~GFf~an~fi~------Y~~I----k~mNLsEDgILVi~L 123 (149)
T PF06173_consen 87 PKLLFKENGFFFANIFIP------YSRI----KAMNLSEDGILVIDL 123 (149)
T ss_pred hhhhhhcccEeeeceeee------HHHH----HhcccCcCcEEEEEe
Confidence 544321 11 22222 2223 355777777888774
Done!