BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017702
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 185/352 (52%), Gaps = 33/352 (9%)
Query: 9 LTEAYPMVGGDDAYSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIAD 68
L E M GG+ SYA NS Y + V+ K ++ + + + L + + K K+AD
Sbjct: 3 LQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNIN---KCIKVAD 59
Query: 69 LGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP- 127
LGC+ GPNTLL V++I+++I+ Q N ++P+ Q+FLND NDFN++FK LP
Sbjct: 60 LGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPT---IQIFLNDLFPNDFNSVFKLLPS 116
Query: 128 --------HARKY---FAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSP 176
+ RK +PGSF+SRLFP S+HF+H+ Y L WLS+VP +V
Sbjct: 117 FYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGI 176
Query: 177 AWNKGSIQCSE-SNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPL 235
NKGSI S+ S + V +AY Q+ D +FL +EEL G M+L + G+ L
Sbjct: 177 GTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLL---TCICKGVEL 233
Query: 236 SNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKM 295
++L NDL G L EEK+DSFNLP Y + +E++ I+ G+F I +
Sbjct: 234 DARNA---IDLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYL 290
Query: 296 EK--------LSQPRRRITANEYASGIRAGIDGLIKKHFGDEFVDEIFNYFT 339
E S I A AS +RA + ++ HFG+ + +IF+ F
Sbjct: 291 ETFKVLYDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFA 342
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/372 (35%), Positives = 192/372 (51%), Gaps = 45/372 (12%)
Query: 15 MVGGDDAYSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVG 74
M GG SYA NS QR V+ K + AI + D IADLGCS G
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAIT-----ALYSGDTVTTRLAIADLGCSSG 63
Query: 75 PNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKY-- 132
PN L AV +I+ +E + ++ P E+Q+FLND NDFN +F+SLP
Sbjct: 64 PNALFAVTELIKTVE-ELRKKMGRENSP---EYQIFLNDLPGNDFNAIFRSLPIENDVDG 119
Query: 133 --FAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSI----QCS 186
F G+PGSF+ RLFPR+++HF+H+SY+L WLS+VP I NKG+I C
Sbjct: 120 VCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMANTCP 173
Query: 187 ESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVL-ILAAVVPDGIPLSNSYVGVFNN 245
+S V+ AY Q++ D FL RA+E+VPGG MVL IL D +++ +
Sbjct: 174 QS---VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSED---RASTECCLIWQ 227
Query: 246 ILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKLSQPRRRI 305
+L N + G++ EEK+D FN+P Y +P E+EA I G+F I+ +E
Sbjct: 228 LLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSC 287
Query: 306 TANEYASG------------IRAGIDGLIKKHFGDEFVDEIFNYFTTKVEENYSIIEEKI 353
T + G +RA + L+ HFG+ ++++F+ + + E S +EK
Sbjct: 288 TKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS--KEKT 345
Query: 354 RNVSNLFISLKR 365
+ + N+ +SL R
Sbjct: 346 KFI-NVIVSLIR 356
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 177 bits (450), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 184/360 (51%), Gaps = 47/360 (13%)
Query: 9 LTEAYPMVGGDDAYSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIAD 68
L E M GG+ SYA NS+Y ++ K ++ + I + L + + K FK+ D
Sbjct: 3 LQEVLHMNGGEGDTSYAKNSSYNLFLI-RVKPVLEQCIQELLRANLPNIN---KCFKVGD 58
Query: 69 LGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP- 127
LGC+ GPNT V++I+++I+ Q N ++P+ Q+FLND NDFN++FK LP
Sbjct: 59 LGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPT---IQIFLNDLFQNDFNSVFKLLPS 115
Query: 128 --------HARKY---FAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSP 176
+ RK +PGSF+SRLFP S+HF+H+ Y LHWLS+VP +V
Sbjct: 116 FYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGI 175
Query: 177 AWNKGSIQCSE-SNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPL 235
+ NKG I S+ S + +AY Q+ D +FL +EEL+ G M+L D
Sbjct: 176 SVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFIC-KEDEFDH 234
Query: 236 SNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKM 295
NS ++L NDL G L EEK+DSFN+P Y + +E++ I+ G+F I +
Sbjct: 235 PNSM-----DLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289
Query: 296 EKLSQP---------------RRRITANEY------ASGIRAGIDGLIKKHFGDEFVDEI 334
E + P ++ +E+ AS +R+ + ++ HFG+ + ++
Sbjct: 290 ETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDL 349
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 175/356 (49%), Gaps = 43/356 (12%)
Query: 15 MVGGDDAYSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVG 74
M GG SYANNS Q + L+ E L+ L + PF DLGCS G
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEET----LENVHLNSSASPPPFTAVDLGCSSG 64
Query: 75 PNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP------- 127
NT+ + I++ I +F P EF F +D NDFNTLF+ LP
Sbjct: 65 ANTVHIIDFIVKHISKRFDAAGI--DPP---EFTAFFSDLPSNDFNTLFQLLPPLVSNTC 119
Query: 128 --------HARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWN 179
R YF AG+PGSF+ RLFP +I F H++++LHWLS+VP+ + D S A+N
Sbjct: 120 MEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYN 179
Query: 180 KGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLI-LAAVVPDGIPLSNS 238
+G + + + AY Q++ D+ FL ARA E+ GG M L+ L D P
Sbjct: 180 RGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVD--PTDQG 237
Query: 239 YVG-VFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKM-- 295
G +F ++DL + G+++ EK D FN+P Y + ++ + ++ NG+F I+K+
Sbjct: 238 GAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVV 297
Query: 296 EKLSQPRRRITANE----------YASGIRAGIDGLIKKHFGDEFVDEIFNYFTTK 341
K P + NE +AS R+ L++ H G+E +++F+ ++
Sbjct: 298 YKGGSP---LVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 350
>pdb|2RCJ|A Chain A, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|B Chain B, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|E Chain E, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|F Chain F, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|I Chain I, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|J Chain J, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|M Chain M, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|N Chain N, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|Q Chain Q, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|R Chain R, Solution Structure Of Human Immunoglobulin M
Length = 218
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 153 FVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARA 212
F+ +SYA++W+ + P + ++ + W+ GS Q + V+ T +ND ++ L +
Sbjct: 27 FIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQ---HYADSVKGRFTISRNDSKNTLFLQM 83
Query: 213 EELVP 217
+ L P
Sbjct: 84 DSLRP 88
>pdb|2FB4|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 229
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 153 FVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARA 212
F+ +SYA++W+ + P + ++ + W+ GS Q + V+ T +ND ++ L +
Sbjct: 27 FIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQ---HYADSVKGRFTISRNDSKNTLFLQM 83
Query: 213 EELVP 217
+ L P
Sbjct: 84 DSLRP 88
>pdb|3GIZ|H Chain H, Crystal Structure Of The Fab Fragment Of Anti-Cd20
Antibody Ofatumumab
Length = 222
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 153 FVHTSYALHWLSKVPKEIVDPCSP-AWNKGSIQCSES 188
F YA+HW+ + P + ++ S +WN GSI ++S
Sbjct: 27 FTFNDYAMHWVRQAPGKGLEWVSTISWNSGSIGYADS 63
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 153 FVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARA 212
F+ +SYA++W+ + P + ++ + W+ GS Q + V+ T +ND ++ L +
Sbjct: 27 FIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQ---HYADSVKGRFTISRNDSKNTLFLQM 83
Query: 213 EELVPGGLMVLILA 226
+ L P V A
Sbjct: 84 DSLRPEDTGVYFCA 97
>pdb|1JMT|A Chain A, X-Ray Structure Of A Core U2af65U2AF35 HETERODIMER
Length = 104
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 302 RRRITANEYASGIRAGIDGLIKKHFGDEFVDEIFNYFTTKVEENYSIIEE 351
R +++ A G+R+ + + + DEF +E+F T++EE Y +EE
Sbjct: 11 RNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVF----TEMEEKYGEVEE 56
>pdb|1W72|H Chain H, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
pdb|1W72|I Chain I, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
Length = 223
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 153 FVHTSYALHWLSKVPKEIVDPCSP-AWNKGSIQCSES 188
F YA+HW+ + P + ++ S +WN GSI ++S
Sbjct: 27 FTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADS 63
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 49 KLDLKILGFDDTL-KPFKIADLGCSVGPNTLLAVQNI 84
++ LK L F D L IADLGC G T++ Q++
Sbjct: 38 EVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHV 74
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 49 KLDLKILGFDDTL-KPFKIADLGCSVGPNTLLAVQNI 84
++ LK L F D L IADLGC G T++ Q++
Sbjct: 33 EVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHV 69
>pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine-
Dependent Methyltransferase Tt1512 From Thermus
Thermophilus Hb8.
pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine-
Dependent Methyltransferase Tt1512 From Thermus
Thermophilus Hb8
Length = 285
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 186 SESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLI 224
+ + +R Y N ++ FL AE L PGG +V+I
Sbjct: 194 ARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVI 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,912,234
Number of Sequences: 62578
Number of extensions: 458273
Number of successful extensions: 1353
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 22
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)