Query 017702
Match_columns 367
No_of_seqs 151 out of 619
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 3.8E-92 8.2E-97 693.1 38.1 348 5-364 11-384 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 6E-86 1.3E-90 645.4 29.1 314 42-366 1-334 (334)
3 PRK14103 trans-aconitate 2-met 99.6 2.2E-14 4.7E-19 135.5 19.6 225 22-346 5-232 (255)
4 PRK01683 trans-aconitate 2-met 99.6 5E-14 1.1E-18 132.9 20.0 227 22-346 7-235 (258)
5 PRK10258 biotin biosynthesis p 99.6 6.7E-14 1.5E-18 131.6 16.7 208 22-338 18-230 (251)
6 TIGR02072 BioC biotin biosynth 99.5 6.3E-13 1.4E-17 122.6 19.0 216 22-343 7-223 (240)
7 COG4106 Tam Trans-aconitate me 99.3 3E-11 6.5E-16 109.8 14.6 221 60-365 28-255 (257)
8 PLN02233 ubiquinone biosynthes 99.0 7.4E-09 1.6E-13 98.5 16.5 167 62-297 73-248 (261)
9 PF13489 Methyltransf_23: Meth 99.0 1.8E-10 3.9E-15 99.7 4.9 138 61-294 21-160 (161)
10 PTZ00098 phosphoethanolamine N 99.0 1.2E-08 2.6E-13 97.1 17.5 150 62-297 52-202 (263)
11 TIGR02752 MenG_heptapren 2-hep 99.0 1.1E-09 2.3E-14 101.6 9.5 167 63-298 46-219 (231)
12 PRK08317 hypothetical protein; 99.0 1.3E-07 2.9E-12 86.8 22.0 220 61-366 18-240 (241)
13 PLN02244 tocopherol O-methyltr 99.0 2.1E-08 4.5E-13 99.0 17.6 159 61-298 117-279 (340)
14 PRK15068 tRNA mo(5)U34 methylt 99.0 3.4E-09 7.4E-14 103.8 11.2 163 63-315 123-290 (322)
15 PLN02336 phosphoethanolamine N 98.9 7.2E-08 1.6E-12 99.0 18.8 183 62-342 266-457 (475)
16 TIGR00740 methyltransferase, p 98.9 1.8E-08 3.8E-13 94.3 12.7 160 62-291 53-221 (239)
17 COG2226 UbiE Methylase involve 98.8 1.1E-08 2.5E-13 95.7 9.2 165 62-296 51-223 (238)
18 TIGR00452 methyltransferase, p 98.8 7.4E-08 1.6E-12 94.0 14.6 163 63-315 122-289 (314)
19 PF01209 Ubie_methyltran: ubiE 98.8 5E-09 1.1E-13 98.1 5.7 169 61-297 46-220 (233)
20 PRK11036 putative S-adenosyl-L 98.8 1.7E-07 3.7E-12 88.6 15.5 159 62-298 44-208 (255)
21 PRK11207 tellurite resistance 98.8 1.1E-07 2.4E-12 86.6 13.5 138 63-297 31-170 (197)
22 smart00828 PKS_MT Methyltransf 98.8 2.1E-07 4.5E-12 85.8 15.4 140 65-298 2-145 (224)
23 PRK11705 cyclopropane fatty ac 98.8 8.8E-07 1.9E-11 88.9 20.0 187 63-345 168-357 (383)
24 PF08241 Methyltransf_11: Meth 98.7 3.1E-08 6.8E-13 77.6 7.0 95 67-223 1-95 (95)
25 PRK15451 tRNA cmo(5)U34 methyl 98.7 1.9E-07 4.1E-12 88.0 13.1 158 62-288 56-222 (247)
26 PLN02396 hexaprenyldihydroxybe 98.7 5.3E-08 1.2E-12 95.3 9.6 152 63-298 132-290 (322)
27 PRK00216 ubiE ubiquinone/menaq 98.7 1.6E-07 3.5E-12 86.6 12.0 164 63-299 52-227 (239)
28 KOG2940 Predicted methyltransf 98.7 1.2E-07 2.5E-12 87.3 10.4 195 61-345 71-279 (325)
29 PLN02490 MPBQ/MSBQ methyltrans 98.7 2.2E-07 4.7E-12 91.6 13.0 145 62-298 113-257 (340)
30 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 6.1E-07 1.3E-11 81.9 15.3 165 62-298 39-211 (223)
31 TIGR00477 tehB tellurite resis 98.6 7.4E-07 1.6E-11 81.0 13.9 136 63-297 31-169 (195)
32 PRK11873 arsM arsenite S-adeno 98.6 6E-07 1.3E-11 85.5 12.8 151 62-297 77-230 (272)
33 PF12847 Methyltransf_18: Meth 98.6 2.9E-07 6.4E-12 75.0 8.6 95 63-225 2-111 (112)
34 PF03848 TehB: Tellurite resis 98.6 7E-07 1.5E-11 81.1 11.5 128 62-297 30-169 (192)
35 PF13847 Methyltransf_31: Meth 98.5 4.1E-07 8.8E-12 79.0 9.3 107 62-227 3-112 (152)
36 PRK12335 tellurite resistance 98.5 1E-06 2.3E-11 84.8 13.0 134 64-297 122-259 (287)
37 PRK06202 hypothetical protein; 98.5 2.8E-06 6.2E-11 79.0 15.1 163 61-298 59-223 (232)
38 PF08242 Methyltransf_12: Meth 98.5 1.3E-07 2.8E-12 75.9 5.0 96 67-221 1-99 (99)
39 PF02353 CMAS: Mycolic acid cy 98.5 1.9E-05 4E-10 75.8 19.5 92 202-323 143-235 (273)
40 TIGR02716 C20_methyl_CrtF C-20 98.4 9.8E-06 2.1E-10 78.6 15.8 154 61-294 148-303 (306)
41 COG2230 Cfa Cyclopropane fatty 98.4 3.2E-05 6.9E-10 74.1 18.7 182 62-349 72-269 (283)
42 PRK00121 trmB tRNA (guanine-N( 98.4 7E-07 1.5E-11 81.7 6.8 160 29-260 13-175 (202)
43 KOG1541 Predicted protein carb 98.4 3.2E-06 6.9E-11 77.6 10.8 138 22-227 21-162 (270)
44 PRK11088 rrmA 23S rRNA methylt 98.4 1.1E-05 2.3E-10 77.1 14.6 76 62-159 85-160 (272)
45 TIGR01983 UbiG ubiquinone bios 98.3 8.1E-06 1.8E-10 75.0 13.2 157 62-299 45-205 (224)
46 PLN02336 phosphoethanolamine N 98.3 4.3E-06 9.4E-11 85.9 10.6 103 63-225 38-142 (475)
47 TIGR02081 metW methionine bios 98.3 1.3E-05 2.9E-10 72.5 12.6 29 272-301 143-171 (194)
48 TIGR02021 BchM-ChlM magnesium 98.3 4.7E-05 1E-09 70.1 16.4 30 269-299 179-208 (219)
49 PRK05785 hypothetical protein; 98.3 1.3E-05 2.9E-10 74.6 12.8 74 63-165 52-125 (226)
50 PRK06922 hypothetical protein; 98.3 2.1E-06 4.6E-11 90.3 8.1 116 63-225 419-537 (677)
51 KOG1270 Methyltransferases [Co 98.2 7.8E-06 1.7E-10 76.9 10.5 75 203-295 173-247 (282)
52 KOG3010 Methyltransferase [Gen 98.2 5.7E-05 1.2E-09 70.3 14.9 99 64-227 35-138 (261)
53 PRK05134 bifunctional 3-demeth 98.2 2.9E-05 6.3E-10 72.0 12.9 157 62-298 48-206 (233)
54 PF00891 Methyltransf_2: O-met 98.2 4.3E-05 9.2E-10 71.4 14.1 104 61-231 99-204 (241)
55 PF05401 NodS: Nodulation prot 98.2 1.3E-05 2.9E-10 72.7 9.7 95 60-226 41-147 (201)
56 TIGR00138 gidB 16S rRNA methyl 98.1 1.1E-05 2.4E-10 72.7 8.8 128 63-271 43-173 (181)
57 TIGR03840 TMPT_Se_Te thiopurin 98.1 8.1E-05 1.8E-09 68.8 14.5 62 203-301 130-191 (213)
58 PF08003 Methyltransf_9: Prote 98.1 2.1E-05 4.6E-10 75.8 10.5 148 62-296 115-266 (315)
59 PRK07580 Mg-protoporphyrin IX 98.1 0.00013 2.9E-09 67.1 15.5 30 270-300 188-217 (230)
60 KOG2361 Predicted methyltransf 98.1 2E-05 4.4E-10 73.3 9.6 195 24-298 31-238 (264)
61 TIGR03438 probable methyltrans 98.1 1.5E-05 3.2E-10 77.5 9.1 110 63-227 64-179 (301)
62 smart00138 MeTrc Methyltransfe 98.1 2.4E-05 5.2E-10 74.6 10.2 43 146-224 199-241 (264)
63 PRK11188 rrmJ 23S rRNA methylt 98.1 3.1E-05 6.8E-10 71.3 10.6 108 63-227 52-167 (209)
64 TIGR00537 hemK_rel_arch HemK-r 98.0 5.1E-05 1.1E-09 67.7 11.3 123 63-227 20-142 (179)
65 TIGR00091 tRNA (guanine-N(7)-) 98.0 4.3E-05 9.2E-10 69.4 10.3 115 63-227 17-134 (194)
66 TIGR03587 Pse_Me-ase pseudamin 98.0 5.3E-05 1.1E-09 69.5 10.3 103 24-164 17-119 (204)
67 COG4123 Predicted O-methyltran 98.0 7.3E-05 1.6E-09 70.4 11.2 116 61-227 43-172 (248)
68 PRK08287 cobalt-precorrin-6Y C 97.9 7.6E-05 1.6E-09 67.1 10.1 20 62-81 31-50 (187)
69 PRK13255 thiopurine S-methyltr 97.9 0.00029 6.2E-09 65.4 14.1 62 203-301 133-194 (218)
70 PF13649 Methyltransf_25: Meth 97.9 2.5E-05 5.5E-10 62.9 6.0 98 66-219 1-101 (101)
71 PF05175 MTS: Methyltransferas 97.9 5.2E-05 1.1E-09 67.4 8.1 109 62-226 31-141 (170)
72 PF06080 DUF938: Protein of un 97.9 0.00021 4.6E-09 65.4 12.1 149 65-295 28-190 (204)
73 KOG1540 Ubiquinone biosynthesi 97.9 8.2E-05 1.8E-09 69.8 9.5 174 61-297 99-282 (296)
74 PLN02585 magnesium protoporphy 97.9 0.00016 3.5E-09 70.8 11.8 29 272-301 275-303 (315)
75 PTZ00146 fibrillarin; Provisio 97.8 0.00024 5.2E-09 68.5 12.8 22 63-84 133-154 (293)
76 PHA03411 putative methyltransf 97.8 0.0001 2.2E-09 70.5 9.8 119 63-227 65-185 (279)
77 PRK09489 rsmC 16S ribosomal RN 97.8 3.8E-05 8.2E-10 76.0 7.0 105 64-226 198-304 (342)
78 PRK15001 SAM-dependent 23S rib 97.8 5.4E-05 1.2E-09 75.8 8.0 105 64-225 230-340 (378)
79 TIGR02469 CbiT precorrin-6Y C5 97.8 9E-05 2E-09 61.0 8.0 22 205-226 102-123 (124)
80 cd02440 AdoMet_MTases S-adenos 97.8 9.7E-05 2.1E-09 57.2 7.6 99 65-224 1-103 (107)
81 PRK04266 fibrillarin; Provisio 97.8 0.00022 4.8E-09 66.6 11.3 21 207-227 158-178 (226)
82 PRK00107 gidB 16S rRNA methylt 97.7 0.00016 3.5E-09 65.5 8.9 99 63-227 46-147 (187)
83 PF05891 Methyltransf_PK: AdoM 97.7 0.00015 3.2E-09 66.9 8.7 142 61-297 54-201 (218)
84 TIGR00438 rrmJ cell division p 97.7 0.0002 4.4E-09 64.4 9.0 25 203-227 124-148 (188)
85 PLN02232 ubiquinone biosynthes 97.7 0.00023 5E-09 62.6 8.7 47 146-231 40-86 (160)
86 PRK13944 protein-L-isoaspartat 97.6 0.00026 5.6E-09 64.8 8.9 78 63-162 73-154 (205)
87 TIGR00080 pimt protein-L-isoas 97.6 0.00027 5.9E-09 65.0 8.9 21 62-82 77-97 (215)
88 PRK13942 protein-L-isoaspartat 97.6 0.00027 5.9E-09 65.1 8.5 21 62-82 76-96 (212)
89 PRK14121 tRNA (guanine-N(7)-)- 97.5 0.00032 6.9E-09 70.3 8.9 111 63-226 123-236 (390)
90 PRK00312 pcm protein-L-isoaspa 97.5 0.00044 9.6E-09 63.3 9.0 20 62-81 78-97 (212)
91 TIGR03534 RF_mod_PrmC protein- 97.5 0.0002 4.2E-09 66.8 6.3 127 63-225 88-217 (251)
92 TIGR03533 L3_gln_methyl protei 97.5 0.00081 1.8E-08 64.8 10.1 121 63-226 122-252 (284)
93 COG2227 UbiG 2-polyprenyl-3-me 97.4 0.00024 5.3E-09 66.3 6.0 99 63-227 60-163 (243)
94 PRK14967 putative methyltransf 97.4 0.0039 8.5E-08 57.7 14.1 122 63-227 37-161 (223)
95 COG2242 CobL Precorrin-6B meth 97.4 0.0026 5.6E-08 57.4 12.0 25 203-227 113-137 (187)
96 PF13659 Methyltransf_26: Meth 97.4 0.00071 1.5E-08 55.4 8.0 24 203-226 93-116 (117)
97 PF05148 Methyltransf_8: Hypot 97.4 0.0018 4E-08 59.4 11.2 89 61-227 71-160 (219)
98 PF07021 MetW: Methionine bios 97.4 0.00067 1.5E-08 61.5 7.9 94 145-299 70-169 (193)
99 PRK00517 prmA ribosomal protei 97.4 0.0012 2.7E-08 62.2 10.0 22 206-227 194-215 (250)
100 PF03291 Pox_MCEL: mRNA cappin 97.3 0.0011 2.4E-08 65.3 8.8 45 149-227 144-188 (331)
101 TIGR00406 prmA ribosomal prote 97.3 0.0011 2.4E-08 64.0 8.5 22 206-227 240-261 (288)
102 PRK11805 N5-glutamine S-adenos 97.2 0.0015 3.2E-08 63.7 9.3 23 204-226 242-264 (307)
103 KOG3178 Hydroxyindole-O-methyl 97.2 0.0052 1.1E-07 60.3 12.3 190 15-298 138-331 (342)
104 TIGR00536 hemK_fam HemK family 97.2 0.0017 3.8E-08 62.4 9.0 25 203-227 222-246 (284)
105 TIGR03704 PrmC_rel_meth putati 97.1 0.0062 1.3E-07 57.7 12.1 23 204-226 195-217 (251)
106 PRK14968 putative methyltransf 97.1 0.007 1.5E-07 53.6 11.5 25 203-227 126-150 (188)
107 PRK00377 cbiT cobalt-precorrin 97.1 0.0043 9.2E-08 56.3 10.1 20 62-81 40-59 (198)
108 PRK00811 spermidine synthase; 97.0 0.0016 3.5E-08 62.7 7.3 109 61-225 75-191 (283)
109 PRK14903 16S rRNA methyltransf 97.0 0.0028 6.1E-08 64.7 9.3 125 63-227 238-368 (431)
110 PRK09328 N5-glutamine S-adenos 97.0 0.0029 6.2E-08 60.0 8.7 24 202-225 215-238 (275)
111 PLN03075 nicotianamine synthas 96.9 0.0058 1.3E-07 59.2 10.0 105 62-225 123-233 (296)
112 PRK10901 16S rRNA methyltransf 96.9 0.0065 1.4E-07 61.9 10.8 125 63-227 245-374 (427)
113 PF03141 Methyltransf_29: Puta 96.9 0.0025 5.4E-08 65.2 7.3 23 60-82 115-137 (506)
114 TIGR00563 rsmB ribosomal RNA s 96.9 0.0065 1.4E-07 61.9 10.4 126 63-227 239-370 (426)
115 PRK14904 16S rRNA methyltransf 96.9 0.0083 1.8E-07 61.5 11.2 125 63-227 251-379 (445)
116 PRK14966 unknown domain/N5-glu 96.8 0.0056 1.2E-07 62.0 9.2 23 204-226 360-382 (423)
117 KOG2899 Predicted methyltransf 96.8 0.0057 1.2E-07 57.3 8.1 49 147-227 163-211 (288)
118 PRK01544 bifunctional N5-gluta 96.8 0.0033 7.1E-08 65.5 7.3 131 63-226 139-270 (506)
119 PRK07402 precorrin-6B methylas 96.7 0.026 5.6E-07 51.0 11.7 25 203-227 120-144 (196)
120 PRK14902 16S rRNA methyltransf 96.7 0.013 2.9E-07 59.9 10.8 125 63-227 251-381 (444)
121 COG2518 Pcm Protein-L-isoaspar 96.6 0.011 2.5E-07 54.3 8.8 22 61-82 71-92 (209)
122 COG2264 PrmA Ribosomal protein 96.6 0.02 4.4E-07 55.5 10.9 20 62-81 162-181 (300)
123 PRK14901 16S rRNA methyltransf 96.6 0.019 4.2E-07 58.6 11.2 130 63-227 253-386 (434)
124 KOG3045 Predicted RNA methylas 96.5 0.0044 9.6E-08 58.5 5.5 25 203-227 242-266 (325)
125 COG2890 HemK Methylase of poly 96.4 0.0058 1.3E-07 58.9 6.2 124 65-226 113-239 (280)
126 PF02390 Methyltransf_4: Putat 96.4 0.0039 8.5E-08 56.8 4.7 112 64-225 19-133 (195)
127 COG2813 RsmC 16S RNA G1207 met 96.4 0.011 2.3E-07 57.3 7.8 102 64-227 160-268 (300)
128 PF01135 PCMT: Protein-L-isoas 96.4 0.013 2.8E-07 54.1 7.7 20 63-82 73-92 (209)
129 TIGR00446 nop2p NOL1/NOP2/sun 96.4 0.024 5.3E-07 53.9 9.8 123 63-227 72-201 (264)
130 KOG1975 mRNA cap methyltransfe 96.3 0.0035 7.7E-08 60.9 3.9 112 62-227 117-239 (389)
131 KOG2904 Predicted methyltransf 96.3 0.072 1.6E-06 50.9 12.5 119 63-231 149-290 (328)
132 KOG4300 Predicted methyltransf 96.3 0.019 4.1E-07 52.7 8.2 103 63-227 77-184 (252)
133 PRK04457 spermidine synthase; 96.3 0.011 2.4E-07 56.4 7.0 110 61-227 65-179 (262)
134 TIGR00417 speE spermidine synt 96.2 0.007 1.5E-07 57.8 5.4 108 62-225 72-186 (270)
135 PRK03612 spermidine synthase; 96.2 0.018 3.8E-07 60.3 8.8 131 61-259 296-437 (521)
136 TIGR01177 conserved hypothetic 96.1 0.026 5.6E-07 55.5 9.0 24 204-227 273-296 (329)
137 PRK13943 protein-L-isoaspartat 96.1 0.025 5.4E-07 55.6 8.6 20 63-82 81-100 (322)
138 PRK01581 speE spermidine synth 96.1 0.012 2.6E-07 58.6 6.2 110 61-226 149-269 (374)
139 smart00650 rADc Ribosomal RNA 96.0 0.023 5E-07 50.1 7.4 20 63-82 14-33 (169)
140 PF05185 PRMT5: PRMT5 arginine 95.9 0.029 6.3E-07 57.6 8.4 23 62-84 186-208 (448)
141 PLN02672 methionine S-methyltr 95.9 0.019 4.2E-07 64.5 7.6 23 205-227 258-280 (1082)
142 PRK13256 thiopurine S-methyltr 95.8 0.26 5.7E-06 46.0 13.4 138 62-298 43-198 (226)
143 PF12147 Methyltransf_20: Puta 95.7 0.57 1.2E-05 45.4 15.5 60 207-291 231-292 (311)
144 PF10294 Methyltransf_16: Puta 95.6 0.02 4.3E-07 51.1 5.1 110 61-230 44-160 (173)
145 PF06325 PrmA: Ribosomal prote 95.6 0.045 9.8E-07 53.1 7.8 18 64-81 163-180 (295)
146 KOG1499 Protein arginine N-met 95.6 0.043 9.2E-07 54.0 7.6 46 142-222 119-164 (346)
147 PLN02366 spermidine synthase 95.5 0.053 1.1E-06 53.0 8.0 110 61-225 90-206 (308)
148 COG4976 Predicted methyltransf 95.3 0.067 1.5E-06 49.9 7.4 66 203-300 203-268 (287)
149 COG0220 Predicted S-adenosylme 95.2 0.13 2.8E-06 48.1 9.4 62 134-225 103-164 (227)
150 PRK01544 bifunctional N5-gluta 95.2 0.063 1.4E-06 56.0 7.8 139 28-225 322-462 (506)
151 PRK10611 chemotaxis methyltran 95.0 0.17 3.7E-06 49.0 9.8 43 62-116 115-157 (287)
152 PHA03412 putative methyltransf 94.9 0.1 2.2E-06 49.1 7.8 72 63-157 50-121 (241)
153 PF01739 CheR: CheR methyltran 94.9 0.12 2.5E-06 47.3 7.9 115 61-225 30-175 (196)
154 PF05724 TPMT: Thiopurine S-me 94.8 0.7 1.5E-05 42.9 13.1 145 61-301 36-194 (218)
155 PLN02781 Probable caffeoyl-CoA 94.6 0.045 9.8E-07 51.2 4.6 23 61-83 67-89 (234)
156 PRK11783 rlmL 23S rRNA m(2)G24 94.5 0.22 4.7E-06 54.1 10.2 28 200-227 631-658 (702)
157 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.5 0.061 1.3E-06 51.2 5.2 82 149-296 157-238 (256)
158 COG1352 CheR Methylase of chem 94.3 0.67 1.5E-05 44.4 11.8 116 62-224 96-240 (268)
159 KOG1331 Predicted methyltransf 94.2 0.14 3E-06 49.2 6.9 55 142-232 95-149 (293)
160 PRK10909 rsmD 16S rRNA m(2)G96 94.1 0.3 6.4E-06 44.7 8.7 18 64-81 55-72 (199)
161 COG2519 GCD14 tRNA(1-methylade 94.0 0.32 7E-06 46.0 8.9 45 206-266 176-220 (256)
162 PRK15128 23S rRNA m(5)C1962 me 93.9 0.56 1.2E-05 47.5 11.2 29 199-227 313-341 (396)
163 KOG3191 Predicted N6-DNA-methy 93.8 2.7 5.9E-05 38.1 13.9 126 62-227 43-170 (209)
164 KOG1500 Protein arginine N-met 93.7 0.48 1E-05 46.7 9.5 24 202-226 260-283 (517)
165 PF01728 FtsJ: FtsJ-like methy 93.1 0.43 9.3E-06 42.3 7.9 37 62-117 23-59 (181)
166 TIGR03439 methyl_EasF probable 92.9 0.65 1.4E-05 45.6 9.4 50 62-127 76-125 (319)
167 KOG1271 Methyltransferases [Ge 92.4 1.8 4E-05 39.2 10.6 18 64-81 69-86 (227)
168 PRK13168 rumA 23S rRNA m(5)U19 92.3 1.3 2.9E-05 45.3 11.1 20 63-82 298-317 (443)
169 PF06859 Bin3: Bicoid-interact 92.2 0.19 4.1E-06 41.6 3.9 44 151-226 2-45 (110)
170 PF04672 Methyltransf_19: S-ad 91.5 7.5 0.00016 37.3 14.4 64 205-294 170-233 (267)
171 PF08123 DOT1: Histone methyla 91.4 1.2 2.6E-05 41.0 8.6 22 202-223 135-156 (205)
172 PF11968 DUF3321: Putative met 90.5 5.7 0.00012 36.9 12.1 93 62-227 51-151 (219)
173 PRK00274 ksgA 16S ribosomal RN 90.4 0.12 2.7E-06 49.3 1.3 20 63-82 43-62 (272)
174 PRK11933 yebU rRNA (cytosine-C 90.3 2.2 4.8E-05 44.2 10.5 125 62-227 113-244 (470)
175 TIGR02987 met_A_Alw26 type II 89.7 3.5 7.6E-05 43.1 11.5 23 62-84 31-53 (524)
176 PF05219 DREV: DREV methyltran 89.2 2.3 5E-05 40.5 8.7 21 62-82 94-114 (265)
177 PRK14896 ksgA 16S ribosomal RN 88.9 0.62 1.3E-05 44.1 4.8 20 63-82 30-49 (258)
178 PF07942 N2227: N2227-like pro 88.7 22 0.00047 34.2 15.1 108 134-312 146-257 (270)
179 PLN02823 spermine synthase 88.6 1.2 2.7E-05 44.1 6.8 21 61-81 102-122 (336)
180 PF01596 Methyltransf_3: O-met 88.3 0.23 4.9E-06 45.7 1.3 75 62-156 45-127 (205)
181 PF13679 Methyltransf_32: Meth 88.3 0.71 1.5E-05 39.5 4.3 23 60-82 23-45 (141)
182 PLN02589 caffeoyl-CoA O-methyl 88.2 1.2 2.6E-05 42.2 6.2 23 61-83 78-100 (247)
183 COG2263 Predicted RNA methylas 88.2 0.86 1.9E-05 41.4 4.9 21 62-82 45-65 (198)
184 PF08704 GCD14: tRNA methyltra 88.1 4.5 9.8E-05 38.3 10.0 22 63-84 41-62 (247)
185 TIGR00755 ksgA dimethyladenosi 87.8 1.6 3.5E-05 41.0 6.9 21 62-82 29-49 (253)
186 COG4122 Predicted O-methyltran 87.7 1.2 2.6E-05 41.4 5.8 24 61-84 58-81 (219)
187 COG0030 KsgA Dimethyladenosine 87.2 1.7 3.8E-05 41.4 6.6 52 63-123 31-94 (259)
188 PRK04338 N(2),N(2)-dimethylgua 87.1 2.2 4.7E-05 43.1 7.7 48 20-82 30-77 (382)
189 PLN02476 O-methyltransferase 86.9 0.85 1.8E-05 44.0 4.4 23 61-83 117-139 (278)
190 PTZ00338 dimethyladenosine tra 86.8 0.79 1.7E-05 44.5 4.2 21 62-82 36-56 (294)
191 PRK11727 23S rRNA mA1618 methy 86.5 1.2 2.5E-05 43.9 5.2 20 62-81 114-133 (321)
192 PF09243 Rsm22: Mitochondrial 86.4 5.9 0.00013 37.9 9.9 18 61-78 32-49 (274)
193 COG0500 SmtA SAM-dependent met 86.0 3.7 8E-05 32.5 7.2 22 206-227 136-157 (257)
194 PRK03522 rumB 23S rRNA methylu 85.8 1 2.2E-05 43.9 4.5 20 63-82 174-193 (315)
195 TIGR00478 tly hemolysin TlyA f 85.0 0.65 1.4E-05 43.4 2.5 21 62-82 75-95 (228)
196 PF02384 N6_Mtase: N-6 DNA Met 81.6 4.2 9.1E-05 39.2 6.8 134 61-227 45-185 (311)
197 COG3963 Phospholipid N-methylt 81.6 7.6 0.00017 34.8 7.6 109 62-227 48-158 (194)
198 PRK11524 putative methyltransf 81.1 3.5 7.6E-05 39.6 5.9 22 204-225 59-80 (284)
199 PRK04148 hypothetical protein; 80.7 4.5 9.7E-05 34.7 5.8 20 62-81 16-36 (134)
200 TIGR00479 rumA 23S rRNA (uraci 79.0 7 0.00015 39.8 7.6 20 63-82 293-312 (431)
201 PF03602 Cons_hypoth95: Conser 77.6 6.4 0.00014 35.4 6.1 21 62-82 42-62 (183)
202 PF02527 GidB: rRNA small subu 76.9 11 0.00024 34.0 7.5 96 65-226 51-149 (184)
203 KOG1661 Protein-L-isoaspartate 73.9 30 0.00066 32.2 9.4 19 63-81 83-101 (237)
204 PF00398 RrnaAD: Ribosomal RNA 73.2 11 0.00024 35.7 6.8 21 62-82 30-50 (262)
205 TIGR02085 meth_trns_rumB 23S r 72.9 4.4 9.6E-05 40.6 4.2 19 64-82 235-253 (374)
206 COG0144 Sun tRNA and rRNA cyto 71.0 1.2E+02 0.0025 30.3 13.8 131 62-227 156-290 (355)
207 COG5459 Predicted rRNA methyla 68.5 44 0.00095 33.6 9.8 44 207-262 207-250 (484)
208 KOG2798 Putative trehalase [Ca 68.3 1E+02 0.0022 30.5 12.1 78 203-312 274-351 (369)
209 PRK05031 tRNA (uracil-5-)-meth 67.4 18 0.0004 36.0 7.3 19 64-82 208-226 (362)
210 COG1189 Predicted rRNA methyla 66.3 4.9 0.00011 37.9 2.7 23 60-82 77-99 (245)
211 PRK00050 16S rRNA m(4)C1402 me 65.1 23 0.00049 34.5 7.1 34 194-227 205-238 (296)
212 TIGR02143 trmA_only tRNA (urac 64.7 21 0.00046 35.5 7.0 18 65-82 200-217 (353)
213 KOG1122 tRNA and rRNA cytosine 64.4 1.2E+02 0.0026 31.2 12.1 132 61-228 240-374 (460)
214 COG0275 Predicted S-adenosylme 64.3 20 0.00043 35.1 6.4 50 194-256 213-262 (314)
215 PRK13699 putative methylase; P 62.4 16 0.00034 34.1 5.3 21 205-225 52-72 (227)
216 TIGR00095 RNA methyltransferas 61.5 5.1 0.00011 36.2 1.8 20 63-82 50-69 (189)
217 COG0742 N6-adenine-specific me 61.2 69 0.0015 29.1 9.0 21 62-82 43-63 (187)
218 PF10672 Methyltrans_SAM: S-ad 61.0 19 0.00041 34.9 5.8 111 64-227 125-240 (286)
219 KOG3420 Predicted RNA methylas 60.9 5.8 0.00013 34.8 2.0 19 62-80 48-66 (185)
220 KOG3115 Methyltransferase-like 60.2 4.3 9.4E-05 37.5 1.1 19 63-81 61-79 (249)
221 PF01564 Spermine_synth: Sperm 59.7 47 0.001 31.2 8.1 112 61-227 75-193 (246)
222 PF07757 AdoMet_MTase: Predict 58.5 5.9 0.00013 32.8 1.5 22 61-82 57-78 (112)
223 KOG4589 Cell division protein 58.4 14 0.0003 33.8 4.0 25 60-84 67-91 (232)
224 TIGR00308 TRM1 tRNA(guanine-26 57.0 25 0.00053 35.4 6.0 51 20-82 14-64 (374)
225 TIGR01444 fkbM_fam methyltrans 54.3 7.1 0.00015 32.7 1.4 18 65-82 1-18 (143)
226 PF01189 Nol1_Nop2_Fmu: NOL1/N 53.1 64 0.0014 31.0 8.0 129 62-227 85-221 (283)
227 TIGR00006 S-adenosyl-methyltra 52.8 52 0.0011 32.2 7.3 34 194-227 209-242 (305)
228 KOG1269 SAM-dependent methyltr 49.6 25 0.00053 35.3 4.6 53 137-227 165-217 (364)
229 COG5124 Protein predicted to b 46.0 12 0.00027 33.5 1.6 38 240-277 38-75 (209)
230 PF09445 Methyltransf_15: RNA 46.0 12 0.00026 33.2 1.6 19 65-83 2-20 (163)
231 PF07091 FmrO: Ribosomal RNA m 45.4 31 0.00068 32.7 4.3 22 60-81 103-124 (251)
232 KOG0820 Ribosomal RNA adenine 45.2 69 0.0015 31.1 6.6 53 60-118 56-120 (315)
233 PF02475 Met_10: Met-10+ like- 43.7 30 0.00065 31.7 3.9 70 62-155 101-174 (200)
234 PF01795 Methyltransf_5: MraW 43.6 17 0.00038 35.6 2.4 51 194-257 210-260 (310)
235 COG0421 SpeE Spermidine syntha 42.9 1.4E+02 0.003 28.8 8.5 19 206-224 171-189 (282)
236 PRK11760 putative 23S rRNA C24 42.2 16 0.00034 36.5 1.9 20 62-81 211-230 (357)
237 COG4076 Predicted RNA methylas 40.5 30 0.00066 31.7 3.3 20 64-83 34-53 (252)
238 PF03962 Mnd1: Mnd1 family; I 39.6 18 0.00039 32.8 1.7 36 243-278 28-63 (188)
239 PF01555 N6_N4_Mtase: DNA meth 39.4 45 0.00098 29.6 4.4 26 202-227 33-58 (231)
240 PF02268 TFIIA_gamma_N: Transc 35.3 39 0.00085 23.9 2.5 21 244-264 12-32 (49)
241 PRK00536 speE spermidine synth 32.7 1.4E+02 0.003 28.5 6.7 22 60-81 70-91 (262)
242 KOG3433 Protein involved in me 32.2 31 0.00067 31.2 2.0 37 241-277 38-74 (203)
243 cd01842 SGNH_hydrolase_like_5 32.0 1.5E+02 0.0032 26.9 6.2 58 144-227 44-101 (183)
244 COG4798 Predicted methyltransf 31.9 64 0.0014 29.8 3.9 23 62-84 48-70 (238)
245 cd08788 CARD_NOD2_2_CARD15 Cas 31.7 54 0.0012 25.6 2.9 43 243-286 12-54 (81)
246 COG2521 Predicted archaeal met 31.6 42 0.00092 31.8 2.8 21 61-81 133-153 (287)
247 COG1092 Predicted SAM-dependen 31.1 3.2E+02 0.007 27.7 9.3 115 63-227 218-338 (393)
248 PF02636 Methyltransf_28: Puta 30.3 64 0.0014 30.2 3.9 24 61-84 17-40 (252)
249 PRK00050 16S rRNA m(4)C1402 me 30.2 45 0.00097 32.5 2.9 22 63-84 20-41 (296)
250 smart00400 ZnF_CHCC zinc finge 29.9 43 0.00093 23.7 2.1 21 64-84 22-42 (55)
251 KOG2915 tRNA(1-methyladenosine 29.8 5.4E+02 0.012 25.1 9.9 21 64-84 107-127 (314)
252 KOG1501 Arginine N-methyltrans 29.3 41 0.00089 34.7 2.5 23 60-82 64-86 (636)
253 PF09851 SHOCT: Short C-termin 29.2 55 0.0012 20.5 2.2 17 250-266 7-23 (31)
254 KOG2920 Predicted methyltransf 28.9 28 0.0006 33.6 1.2 18 64-81 118-135 (282)
255 PF02375 JmjN: jmjN domain; I 27.1 24 0.00052 22.9 0.3 14 271-284 1-14 (34)
256 PF04816 DUF633: Family of unk 25.3 37 0.0008 31.1 1.3 41 66-126 1-41 (205)
257 PF01269 Fibrillarin: Fibrilla 25.3 2.7E+02 0.0058 26.2 6.9 24 61-85 72-95 (229)
258 COG2231 Uncharacterized protei 24.7 1.3E+02 0.0028 27.9 4.6 38 244-288 45-82 (215)
259 PRK13245 hetR heterocyst diffe 24.0 3.7E+02 0.008 25.3 7.4 38 326-363 257-294 (299)
260 PF09597 IGR: IGR protein moti 23.9 64 0.0014 23.5 2.0 27 194-220 13-39 (57)
261 COG0357 GidB Predicted S-adeno 22.8 83 0.0018 29.2 3.1 19 63-81 68-86 (215)
262 COG0293 FtsJ 23S rRNA methylas 22.5 1.4E+02 0.003 27.6 4.4 24 61-84 44-67 (205)
263 PF05958 tRNA_U5-meth_tr: tRNA 22.3 1E+02 0.0022 30.6 3.9 18 65-82 199-216 (352)
264 TIGR00730 conserved hypothetic 22.2 1.4E+02 0.0031 26.6 4.4 41 243-286 137-177 (178)
265 KOG4058 Uncharacterized conser 22.2 82 0.0018 27.9 2.7 64 13-81 24-91 (199)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=3.8e-92 Score=693.15 Aligned_cols=348 Identities=32% Similarity=0.557 Sum_probs=311.5
Q ss_pred ccCCccceecccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHH
Q 017702 5 ESNNLTEAYPMVGGDDAYSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 5 ~~~~~~~~~~M~gg~g~~sY~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~i 84 (367)
.+|++++++||+||+|++||++||.+|+.++..++|+|+++|++.. .... +.++++|||||||+|+||+.+++.|
T Consensus 11 ~~m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~-~~~~----p~~~~~iaDlGcs~G~ntl~~vs~i 85 (386)
T PLN02668 11 SNMKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVH-LNSS----PEVPFTAVDLGCSSGSNTIHIIDVI 85 (386)
T ss_pred ecceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccC----CCcceeEEEecCCCCccHHHHHHHH
Confidence 4589999999999999999999999999999999999999998742 1211 1268999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc----------------ccceeeccCccccccCCCC
Q 017702 85 IEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA----------------RKYFAAGLPGSFHSRLFPR 148 (367)
Q Consensus 85 i~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~----------------~~~f~~gvp~SFy~~l~P~ 148 (367)
|++|+++|++.+. ..| ||||||||||+||||+||+.|+.. ++||++|||||||+||||+
T Consensus 86 I~~i~~~~~~~~~--~~p---e~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~ 160 (386)
T PLN02668 86 VKHMSKRYESAGL--DPP---EFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPA 160 (386)
T ss_pred HHHHHHHhhhcCC--CCC---cceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCC
Confidence 9999999987432 267 999999999999999999999742 2499999999999999999
Q ss_pred CceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecc
Q 017702 149 SSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAV 228 (367)
Q Consensus 149 ~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 228 (367)
+|+||+||++||||||++|+.+.|+.+++||||+||+++++|+|++||++||++||..||++||+||+|||+||++++|
T Consensus 161 ~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~G- 239 (386)
T PLN02668 161 RSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLG- 239 (386)
T ss_pred CceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEec-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhhHHHH-HHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEEecCCC----
Q 017702 229 VPDGIPLSNSYVGVFNNI-LGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKLSQPRR---- 303 (367)
Q Consensus 229 ~~n~~~~~~~~~~~~~~~-l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~~~p~~---- 303 (367)
|++..+..+.....+|+. +.++|++||.||+|++|++|+||+|+|+||++|++++|+++|+|+|+++|.++..++
T Consensus 240 r~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~ 319 (386)
T PLN02668 240 RTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVN 319 (386)
T ss_pred CCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCccccc
Confidence 876555444335566776 999999999999999999999999999999999999999999999999999875421
Q ss_pred -C----CCHHHHHHhHHhhhhhhhhhccCHHHHHHHHHHHHHHHHhhhhHHHHhcCCeEEEEEEEE
Q 017702 304 -R----ITANEYASGIRAGIDGLIKKHFGDEFVDEIFNYFTTKVEENYSIIEEKIRNVSNLFISLK 364 (367)
Q Consensus 304 -~----~~~~~v~~~iRa~~~~~l~~~~~~~~~de~f~ry~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (367)
+ ..+..+++++||+.+|++.+|||++++|++|+||+++++.+.+.. .++.+.++++++|.
T Consensus 320 ~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~-~~~~~~~~~~~sL~ 384 (386)
T PLN02668 320 EPDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKEL-LEKLQFFHIVASLS 384 (386)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh-cccCceEEEEEEEe
Confidence 1 124568999999999999999999999999999999999988854 25667888888874
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=6e-86 Score=645.37 Aligned_cols=314 Identities=49% Similarity=0.814 Sum_probs=260.6
Q ss_pred HHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHH
Q 017702 42 ISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNT 121 (367)
Q Consensus 42 l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~ 121 (367)
++++|.+++.... .+++++|||||||+|+||+.+++.||++|+++|++.+. .++| ||||||||||+||||+
T Consensus 1 ~~~ai~~~~~~~~-----~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~-~~~~---e~~v~~nDlP~NDFn~ 71 (334)
T PF03492_consen 1 LEEAIKELYNSSN-----NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNN-QPPP---EFQVFFNDLPSNDFNT 71 (334)
T ss_dssp -HHHHHHHHHSTT-----TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT--SS-----EEEEEEEE-TTS-HHH
T ss_pred ChHHHHHHHhcCC-----CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcC-CCCC---eEEEEeCCCCCccHHH
Confidence 4677777553222 57899999999999999999999999999999987541 1367 9999999999999999
Q ss_pred HhhcCCcc-------ccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCccccc-CCCHHHH
Q 017702 122 LFKSLPHA-------RKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCS-ESNIEVV 193 (367)
Q Consensus 122 lf~~l~~~-------~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~-~~~~~~~ 193 (367)
||++|+.. ++||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++ +++++|.
T Consensus 72 lF~~l~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~ 151 (334)
T PF03492_consen 72 LFKSLPSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVA 151 (334)
T ss_dssp HHHCHHHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHH
T ss_pred HHHhChhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHH
Confidence 99999875 799999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcc
Q 017702 194 RAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTY 273 (367)
Q Consensus 194 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y 273 (367)
+||++||++||.+||++||+||+|||+||++++| +++..+. +.+...+|+.|.++|++||.||+|+++++|+||+|+|
T Consensus 152 ~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g-r~~~~~~-~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y 229 (334)
T PF03492_consen 152 KAYAKQFQKDFSSFLKARAEELVPGGRMVLTFLG-RDEEDPS-STGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIY 229 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE--STSSTT-STTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB
T ss_pred HHHHHHHHHHHHHHHHHhhheeccCcEEEEEEee-ccccccc-cCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCcc
Confidence 9999999999999999999999999999999999 8874432 2345689999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhCCceEEeEEEEEecCCC------------CCCHHHHHHhHHhhhhhhhhhccCHHHHHHHHHHHHHH
Q 017702 274 NATPKELEAIIRTNGNFTIEKMEKLSQPRR------------RITANEYASGIRAGIDGLIKKHFGDEFVDEIFNYFTTK 341 (367)
Q Consensus 274 ~~s~eE~~~~l~~~g~F~I~~lE~~~~p~~------------~~~~~~v~~~iRa~~~~~l~~~~~~~~~de~f~ry~~~ 341 (367)
+||.+|++++|+++|+|+|+++|.+..+.. ...++.+++++||+.+|++.+|||++++|+||+||+++
T Consensus 230 ~ps~eEv~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~ 309 (334)
T PF03492_consen 230 FPSPEEVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKK 309 (334)
T ss_dssp ---HHHHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 999999999999999999999999984411 12467899999999999999999999999999999999
Q ss_pred HHhhhhHHHHhcCCeEEEEEEEEec
Q 017702 342 VEENYSIIEEKIRNVSNLFISLKRF 366 (367)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (367)
++++++....++++.++++++|+|+
T Consensus 310 v~~~~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 310 VAEHLEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHHHTHTT-BEEEEEEEEEEE-
T ss_pred HHHHHHHhhccCCCcEEEEEEEeeC
Confidence 9999987655668899999999996
No 3
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=2.2e-14 Score=135.51 Aligned_cols=225 Identities=15% Similarity=0.181 Sum_probs=143.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCC
Q 017702 22 YSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQK 101 (367)
Q Consensus 22 ~sY~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~ 101 (367)
..|.+++..|.+.+..+++.+. .....+|+|+|||+|..+..+.+..
T Consensus 5 ~~y~~~~~~~~~~~~~ll~~l~----------------~~~~~~vLDlGcG~G~~~~~l~~~~----------------- 51 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLARVG----------------AERARRVVDLGCGPGNLTRYLARRW----------------- 51 (255)
T ss_pred HHHHHHHhHhhCHHHHHHHhCC----------------CCCCCEEEEEcCCCCHHHHHHHHHC-----------------
Confidence 5799999999877764433321 2345899999999998887664221
Q ss_pred CCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCC
Q 017702 102 PSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKG 181 (367)
Q Consensus 102 p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g 181 (367)
| ..+|+--|+..+- -...+. ..--|..+. .+.+.|.+++|+++|+.++||+.+
T Consensus 52 p---~~~v~gvD~s~~~-~~~a~~---~~~~~~~~d----~~~~~~~~~fD~v~~~~~l~~~~d---------------- 104 (255)
T PRK14103 52 P---GAVIEALDSSPEM-VAAARE---RGVDARTGD----VRDWKPKPDTDVVVSNAALQWVPE---------------- 104 (255)
T ss_pred C---CCEEEEEECCHHH-HHHHHh---cCCcEEEcC----hhhCCCCCCceEEEEehhhhhCCC----------------
Confidence 2 2357777775321 111221 112244443 245567789999999999999652
Q ss_pred cccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCC
Q 017702 182 SIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLS 261 (367)
Q Consensus 182 ~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~ 261 (367)
...+|+.-++-|+|||+|++.+.+ .... ..+. .+..+...+.+.
T Consensus 105 ----------------------~~~~l~~~~~~LkpgG~l~~~~~~-~~~~---------~~~~----~~~~~~~~~~w~ 148 (255)
T PRK14103 105 ----------------------HADLLVRWVDELAPGSWIAVQVPG-NFDA---------PSHA----AVRALARREPWA 148 (255)
T ss_pred ----------------------HHHHHHHHHHhCCCCcEEEEEcCC-CcCC---------hhHH----HHHHHhccCchh
Confidence 235788888999999999998776 2111 0111 112222222111
Q ss_pred Hhhhh--ccCCCcccCCHHHHHHHHHhCCceEEeEEEEEecCCCCCCHHHHHHhHHhh-hhhhhhhccCHHHHHHHHHHH
Q 017702 262 EEKVD--SFNLPTYNATPKELEAIIRTNGNFTIEKMEKLSQPRRRITANEYASGIRAG-IDGLIKKHFGDEFVDEIFNYF 338 (367)
Q Consensus 262 ~~~~d--~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~~~p~~~~~~~~v~~~iRa~-~~~~l~~~~~~~~~de~f~ry 338 (367)
.. +. .+..+..+.+++++.+++++.| |++...+..... .......+..|+++. +.++++ .++++.+++|.+.+
T Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 224 (255)
T PRK14103 149 KL-LRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH-QLTGEDPVLDWITGTALRPVRE-RLSDDSWEQFRAEL 224 (255)
T ss_pred HH-hcccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee-eCCCchhhhhhhhccchhhhhh-hCCHHHHHHHHHHH
Confidence 10 11 1223456789999999999997 987765543222 233456788899865 467776 69999999999999
Q ss_pred HHHHHhhh
Q 017702 339 TTKVEENY 346 (367)
Q Consensus 339 ~~~~~~~~ 346 (367)
.+.+++..
T Consensus 225 ~~~l~~~~ 232 (255)
T PRK14103 225 IPLLREAY 232 (255)
T ss_pred HHHHHHHC
Confidence 99988774
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=5e-14 Score=132.93 Aligned_cols=227 Identities=15% Similarity=0.203 Sum_probs=143.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCC
Q 017702 22 YSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQK 101 (367)
Q Consensus 22 ~sY~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~ 101 (367)
..|.+++..|.+....++..+ . ..+..+|+|+|||+|..+..+.+..
T Consensus 7 ~~Y~~~~~~~~~~~~~ll~~~----------~------~~~~~~vLDiGcG~G~~~~~la~~~----------------- 53 (258)
T PRK01683 7 SLYLKFEDERTRPARDLLARV----------P------LENPRYVVDLGCGPGNSTELLVERW----------------- 53 (258)
T ss_pred HHHHHHHHHhhcHHHHHHhhC----------C------CcCCCEEEEEcccCCHHHHHHHHHC-----------------
Confidence 579999988877766433221 1 2345799999999999988775322
Q ss_pred CCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCC
Q 017702 102 PSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKG 181 (367)
Q Consensus 102 p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g 181 (367)
| .-+|+-.|+...-....-+.++ +--|..+. + ..+.|++++|+++|+.++||+.+
T Consensus 54 ~---~~~v~gvD~s~~~i~~a~~~~~--~~~~~~~d---~-~~~~~~~~fD~v~~~~~l~~~~d---------------- 108 (258)
T PRK01683 54 P---AARITGIDSSPAMLAEARSRLP--DCQFVEAD---I-ASWQPPQALDLIFANASLQWLPD---------------- 108 (258)
T ss_pred C---CCEEEEEECCHHHHHHHHHhCC--CCeEEECc---h-hccCCCCCccEEEEccChhhCCC----------------
Confidence 1 2368888876432221111111 12244443 2 24457789999999999999642
Q ss_pred cccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCC
Q 017702 182 SIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLS 261 (367)
Q Consensus 182 ~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~ 261 (367)
...+|+...+.|+|||.+++.+++ .... ..+. .++++.......
T Consensus 109 ----------------------~~~~l~~~~~~LkpgG~~~~~~~~-~~~~---------~~~~----~~~~~~~~~~w~ 152 (258)
T PRK01683 109 ----------------------HLELFPRLVSLLAPGGVLAVQMPD-NLDE---------PSHV----LMREVAENGPWE 152 (258)
T ss_pred ----------------------HHHHHHHHHHhcCCCcEEEEECCC-CCCC---------HHHH----HHHHHHccCchH
Confidence 235788888999999999998754 1110 0111 122322221111
Q ss_pred HhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEE-ecCCCCCCHHHHHHhHHhhh-hhhhhhccCHHHHHHHHHHHH
Q 017702 262 EEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL-SQPRRRITANEYASGIRAGI-DGLIKKHFGDEFVDEIFNYFT 339 (367)
Q Consensus 262 ~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~-~~p~~~~~~~~v~~~iRa~~-~~~l~~~~~~~~~de~f~ry~ 339 (367)
..-...-..+.++++.+++...+...| +.++..+.. .++ +.++..+.+|++++. .+++. .++++..++|.++|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~f~~~~~ 228 (258)
T PRK01683 153 QNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTYYHP--MPSAQAIVEWVKGTGLRPFLD-PLTESEQAAFLAAYL 228 (258)
T ss_pred HHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeeeeee--cCCchhhhhhhhhccHHHHHh-hCCHHHHHHHHHHHH
Confidence 110011112446789999999999987 666444332 233 556788999999754 77775 699999999999999
Q ss_pred HHHHhhh
Q 017702 340 TKVEENY 346 (367)
Q Consensus 340 ~~~~~~~ 346 (367)
+.+.+..
T Consensus 229 ~~~~~~~ 235 (258)
T PRK01683 229 ARIAEAY 235 (258)
T ss_pred HHHHHHC
Confidence 9998773
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.58 E-value=6.7e-14 Score=131.62 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=134.3
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCC
Q 017702 22 YSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQK 101 (367)
Q Consensus 22 ~sY~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~ 101 (367)
.+|.+++..|+.+...+...+. ....-+|+|+|||+|.+|..+. +.
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l~----------------~~~~~~vLDiGcG~G~~~~~l~--------~~---------- 63 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAMLP----------------QRKFTHVLDAGCGPGWMSRYWR--------ER---------- 63 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhcC----------------ccCCCeEEEeeCCCCHHHHHHH--------Hc----------
Confidence 4799999999988887655432 2235689999999998876553 10
Q ss_pred CCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCC
Q 017702 102 PSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKG 181 (367)
Q Consensus 102 p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g 181 (367)
.-+++..|+...--...-+..+ ...|..+. +..-.+|++++|+++|+.++||+.+
T Consensus 64 ----~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d---~~~~~~~~~~fD~V~s~~~l~~~~d---------------- 118 (251)
T PRK10258 64 ----GSQVTALDLSPPMLAQARQKDA--ADHYLAGD---IESLPLATATFDLAWSNLAVQWCGN---------------- 118 (251)
T ss_pred ----CCeEEEEECCHHHHHHHHhhCC--CCCEEEcC---cccCcCCCCcEEEEEECchhhhcCC----------------
Confidence 1257888875422111111111 12344443 3333467889999999999999653
Q ss_pred cccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCC
Q 017702 182 SIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLS 261 (367)
Q Consensus 182 ~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~ 261 (367)
...+|..-.+-|+|||.+++++++ .++ +..+.++|..+-..
T Consensus 119 ----------------------~~~~l~~~~~~Lk~gG~l~~~~~~-~~~------------~~el~~~~~~~~~~---- 159 (251)
T PRK10258 119 ----------------------LSTALRELYRVVRPGGVVAFTTLV-QGS------------LPELHQAWQAVDER---- 159 (251)
T ss_pred ----------------------HHHHHHHHHHHcCCCeEEEEEeCC-CCc------------hHHHHHHHHHhccC----
Confidence 335788888999999999999998 443 12344555532111
Q ss_pred HhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEEecCCCCCCHHHHHHhHHhhhhhhh-----hhccCHHHHHHHHH
Q 017702 262 EEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKLSQPRRRITANEYASGIRAGIDGLI-----KKHFGDEFVDEIFN 336 (367)
Q Consensus 262 ~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~~~p~~~~~~~~v~~~iRa~~~~~l-----~~~~~~~~~de~f~ 336 (367)
....-+++.+|+.+++...+ +++ ..+.+..+ +.++..+..++|..+.... ...+++..+.++.+
T Consensus 160 -------~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~~--f~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
T PRK10258 160 -------PHANRFLPPDAIEQALNGWR-YQH-HIQPITLW--FDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQL 228 (251)
T ss_pred -------CccccCCCHHHHHHHHHhCC-cee-eeeEEEEE--CCCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHH
Confidence 11233678999999998764 543 33444333 6788999999998764332 23577777777766
Q ss_pred HH
Q 017702 337 YF 338 (367)
Q Consensus 337 ry 338 (367)
.|
T Consensus 229 ~~ 230 (251)
T PRK10258 229 AW 230 (251)
T ss_pred hc
Confidence 66
No 6
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.53 E-value=6.3e-13 Score=122.61 Aligned_cols=216 Identities=18% Similarity=0.264 Sum_probs=146.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCC
Q 017702 22 YSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQK 101 (367)
Q Consensus 22 ~sY~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~ 101 (367)
.+|.+.+..|+.+...+.+.+.... ..++.+|+|+|||+|..+..+.+..
T Consensus 7 ~~y~~~~~~q~~~~~~l~~~~~~~~-------------~~~~~~vLDlG~G~G~~~~~l~~~~----------------- 56 (240)
T TIGR02072 7 KTYDRHAKIQREMAKRLLALLKEKG-------------IFIPASVLDIGCGTGYLTRALLKRF----------------- 56 (240)
T ss_pred hchhHHHHHHHHHHHHHHHHhhhhc-------------cCCCCeEEEECCCccHHHHHHHHhC-----------------
Confidence 5799999999988888777665211 1335789999999999887665322
Q ss_pred CCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCC
Q 017702 102 PSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKG 181 (367)
Q Consensus 102 p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g 181 (367)
| ..+++..|......+..-+.+++ +-.|..+ ++....+|++++|+++++.++||+.
T Consensus 57 ~---~~~~~~~D~~~~~~~~~~~~~~~-~~~~~~~---d~~~~~~~~~~fD~vi~~~~l~~~~----------------- 112 (240)
T TIGR02072 57 P---QAEFIALDISAGMLAQAKTKLSE-NVQFICG---DAEKLPLEDSSFDLIVSNLALQWCD----------------- 112 (240)
T ss_pred C---CCcEEEEeChHHHHHHHHHhcCC-CCeEEec---chhhCCCCCCceeEEEEhhhhhhcc-----------------
Confidence 2 33678888865544444443432 2233333 3445567889999999999999964
Q ss_pred cccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCC
Q 017702 182 SIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLS 261 (367)
Q Consensus 182 ~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~ 261 (367)
|...+|....+-|+|||.+++..++ .+. + ..+..++..
T Consensus 113 ---------------------~~~~~l~~~~~~L~~~G~l~~~~~~-~~~-----------~-~~~~~~~~~-------- 150 (240)
T TIGR02072 113 ---------------------DLSQALSELARVLKPGGLLAFSTFG-PGT-----------L-HELRQSFGQ-------- 150 (240)
T ss_pred ---------------------CHHHHHHHHHHHcCCCcEEEEEeCC-ccC-----------H-HHHHHHHHH--------
Confidence 3335889999999999999999877 322 0 112222221
Q ss_pred HhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEEecCCCCCCHHHHHHhHHhhhh-hhhhhccCHHHHHHHHHHHHH
Q 017702 262 EEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKLSQPRRRITANEYASGIRAGID-GLIKKHFGDEFVDEIFNYFTT 340 (367)
Q Consensus 262 ~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~~~p~~~~~~~~v~~~iRa~~~-~~l~~~~~~~~~de~f~ry~~ 340 (367)
....+++.+++.+++.+. |....++....+..+.+...+..++|..+. ......++.+...++.+.|.+
T Consensus 151 --------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 220 (240)
T TIGR02072 151 --------HGLRYLSLDELKALLKNS--FELLTLEEELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQ 220 (240)
T ss_pred --------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeCCCHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHH
Confidence 112378899999999875 877766655444345677889999988653 333345888888888888877
Q ss_pred HHH
Q 017702 341 KVE 343 (367)
Q Consensus 341 ~~~ 343 (367)
.+.
T Consensus 221 ~~~ 223 (240)
T TIGR02072 221 EFQ 223 (240)
T ss_pred hhc
Confidence 664
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.33 E-value=3e-11 Score=109.83 Aligned_cols=221 Identities=16% Similarity=0.261 Sum_probs=136.7
Q ss_pred CCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCc
Q 017702 60 TLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPG 139 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~ 139 (367)
...+.+|+|+|||+|..|.++.+. +.. -+++=-|-....-..--+.+|+ --|.-|.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~R--------wP~------------A~i~GiDsS~~Mla~Aa~rlp~--~~f~~aD-- 83 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARR--------WPD------------AVITGIDSSPAMLAKAAQRLPD--ATFEEAD-- 83 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHh--------CCC------------CeEeeccCCHHHHHHHHHhCCC--Cceeccc--
Confidence 345799999999999999998842 221 1333333332222222222322 1233333
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
....-|+...|++||+.+||||.+.|. .|.+--.+|.|||
T Consensus 84 --l~~w~p~~~~dllfaNAvlqWlpdH~~--------------------------------------ll~rL~~~L~Pgg 123 (257)
T COG4106 84 --LRTWKPEQPTDLLFANAVLQWLPDHPE--------------------------------------LLPRLVSQLAPGG 123 (257)
T ss_pred --HhhcCCCCccchhhhhhhhhhccccHH--------------------------------------HHHHHHHhhCCCc
Confidence 355668899999999999999776553 6677778999999
Q ss_pred eEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCC-CcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 220 LMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNL-PTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 220 ~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~-P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
.|.+.|++ |-...+ +.+ +++.++++-. ..++..+.. ----+++.-|-+++...+ =+|+--++.
T Consensus 124 ~LAVQmPd---N~deps-------H~~----mr~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~ 187 (257)
T COG4106 124 VLAVQMPD---NLDEPS-------HRL----MRETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTT 187 (257)
T ss_pred eEEEECCC---ccCchh-------HHH----HHHHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeeee
Confidence 99999986 322111 232 3333333311 122221110 112478899999987764 455444443
Q ss_pred -ecCCCCCCHHHHHHhHHhhh-hhhhhhccCHHHHHHHHHHHHHHHHhhhhHHHHhcCC----eEEEEEEEEe
Q 017702 299 -SQPRRRITANEYASGIRAGI-DGLIKKHFGDEFVDEIFNYFTTKVEENYSIIEEKIRN----VSNLFISLKR 365 (367)
Q Consensus 299 -~~p~~~~~~~~v~~~iRa~~-~~~l~~~~~~~~~de~f~ry~~~~~~~~~~~~~~~~~----~~~~~~~l~~ 365 (367)
.++ ..+...+..|+|+++ -|++.. ++++-...|.++|..++++++.. ..+++ +--+|||-+|
T Consensus 188 Y~h~--l~~a~aIvdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~--~~dGr~ll~FpRlFiVA~~ 255 (257)
T COG4106 188 YYHQ--LPGADAIVDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPP--RADGRVLLAFPRLFIVATR 255 (257)
T ss_pred cccc--CCCccchhhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCC--ccCCcEEeecceEEEEEec
Confidence 344 235578999999865 688884 99999999999999999776443 23333 3345666554
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.05 E-value=7.4e-09 Score=98.47 Aligned_cols=167 Identities=15% Similarity=0.161 Sum_probs=93.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC------ccccceee
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP------HARKYFAA 135 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~------~~~~~f~~ 135 (367)
...+|+|+|||+|..+..+...+ .| .-+|+--|+..+--...-+..+ ..+--|..
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~----------------~~---~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~ 133 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV----------------GS---DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIE 133 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh----------------CC---CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 35799999999999887655322 11 2256666765433222111111 00112333
Q ss_pred ccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 017702 136 GLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEEL 215 (367)
Q Consensus 136 gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 215 (367)
+. ..+--+|++++|++++++++||+. |...+|+.-++-|
T Consensus 134 ~d---~~~lp~~~~sfD~V~~~~~l~~~~--------------------------------------d~~~~l~ei~rvL 172 (261)
T PLN02233 134 GD---ATDLPFDDCYFDAITMGYGLRNVV--------------------------------------DRLKAMQEMYRVL 172 (261)
T ss_pred cc---cccCCCCCCCEeEEEEecccccCC--------------------------------------CHHHHHHHHHHHc
Confidence 33 233346889999999999999964 3335888899999
Q ss_pred ccCceEEEEeecccCCCCCCCCCchhhHHHHH-HHHHHHHH-HcCCCCHhhhhccC-CCcccCCHHHHHHHHHhCCceEE
Q 017702 216 VPGGLMVLILAAVVPDGIPLSNSYVGVFNNIL-GSCFNDLA-KMGVLSEEKVDSFN-LPTYNATPKELEAIIRTNGNFTI 292 (367)
Q Consensus 216 ~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l-~~al~~m~-~eG~i~~~~~d~f~-~P~y~~s~eE~~~~l~~~g~F~I 292 (367)
||||++++..++ +++.. ....+++.. ...+.-+. .-|. .+++.... .=-.+++.+|+.+++++.| |++
T Consensus 173 kpGG~l~i~d~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~ 243 (261)
T PLN02233 173 KPGSRVSILDFN-KSTQP-----FTTSMQEWMIDNVVVPVATGYGL--AKEYEYLKSSINEYLTGEELEKLALEAG-FSS 243 (261)
T ss_pred CcCcEEEEEECC-CCCcH-----HHHHHHHHHHhhhhhHHHHHhCC--hHHHHHHHHHHHhcCCHHHHHHHHHHCC-CCE
Confidence 999999999888 54421 011111111 11111010 0121 11110000 0012789999999999997 987
Q ss_pred eEEEE
Q 017702 293 EKMEK 297 (367)
Q Consensus 293 ~~lE~ 297 (367)
.+...
T Consensus 244 ~~~~~ 248 (261)
T PLN02233 244 AKHYE 248 (261)
T ss_pred EEEEE
Confidence 65433
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.05 E-value=1.8e-10 Score=99.70 Aligned_cols=138 Identities=22% Similarity=0.281 Sum_probs=89.0
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGS 140 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~S 140 (367)
....+|+|+|||+|.++..+. + .+ .+++-.|........ . ..++..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~----------~~----~~~~g~D~~~~~~~~--~----------~~~~~~ 66 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------K----------RG----FEVTGVDISPQMIEK--R----------NVVFDN 66 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------H----------TT----SEEEEEESSHHHHHH--T----------TSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------H----------hC----CEEEEEECCHHHHhh--h----------hhhhhh
Confidence 456899999999998766553 1 12 267777775322111 0 011122
Q ss_pred cc--ccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 141 FH--SRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 141 Fy--~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
|. ....|++++|+|+|+.+|||+. |+..+|+.-.+-|+||
T Consensus 67 ~~~~~~~~~~~~fD~i~~~~~l~~~~--------------------------------------d~~~~l~~l~~~Lkpg 108 (161)
T PF13489_consen 67 FDAQDPPFPDGSFDLIICNDVLEHLP--------------------------------------DPEEFLKELSRLLKPG 108 (161)
T ss_dssp EECHTHHCHSSSEEEEEEESSGGGSS--------------------------------------HHHHHHHHHHHCEEEE
T ss_pred hhhhhhhccccchhhHhhHHHHhhcc--------------------------------------cHHHHHHHHHHhcCCC
Confidence 32 3445889999999999999966 4456999999999999
Q ss_pred ceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeE
Q 017702 219 GLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEK 294 (367)
Q Consensus 219 G~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~ 294 (367)
|++++..+. +... ....+... ..... . .--..+.+.+++++++++.| |+|++
T Consensus 109 G~l~~~~~~-~~~~--------------~~~~~~~~---~~~~~---~--~~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 109 GYLVISDPN-RDDP--------------SPRSFLKW---RYDRP---Y--GGHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEEEEEEB-TTSH--------------HHHHHHHC---CGTCH---H--TTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred CEEEEEEcC-Ccch--------------hhhHHHhc---CCcCc---c--CceeccCCHHHHHHHHHHCC-CEEEE
Confidence 999999998 4321 00111110 11100 0 01225679999999999997 98864
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.04 E-value=1.2e-08 Score=97.14 Aligned_cols=150 Identities=14% Similarity=0.156 Sum_probs=93.3
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc-cccceeeccCcc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH-ARKYFAAGLPGS 140 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~-~~~~f~~gvp~S 140 (367)
+..+|+|+|||+|..+..+... + ..+|+-.|+..+-....=+.... .+-.|.. ++
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~--------~-------------~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~---~D 107 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEK--------Y-------------GAHVHGVDICEKMVNIAKLRNSDKNKIEFEA---ND 107 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhh--------c-------------CCEEEEEECCHHHHHHHHHHcCcCCceEEEE---CC
Confidence 4579999999999988766411 0 12577778764332221111111 1122333 34
Q ss_pred ccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCce
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGL 220 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 220 (367)
+...-+|++++|+++|..++++++. .|...+|+.-++-|+|||+
T Consensus 108 ~~~~~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~ 151 (263)
T PTZ00098 108 ILKKDFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGI 151 (263)
T ss_pred cccCCCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcE
Confidence 5555678899999999888766431 2555789999999999999
Q ss_pred EEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEE
Q 017702 221 MVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEK 297 (367)
Q Consensus 221 lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~ 297 (367)
|+++-+. ..+... +. +.+...+. .. .+..+++++|.+++++.| |++...+.
T Consensus 152 lvi~d~~-~~~~~~----~~----~~~~~~~~----~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d 202 (263)
T PTZ00098 152 LLITDYC-ADKIEN----WD----EEFKAYIK----KR------------KYTLIPIQEYGDLIKSCN-FQNVVAKD 202 (263)
T ss_pred EEEEEec-cccccC----cH----HHHHHHHH----hc------------CCCCCCHHHHHHHHHHCC-CCeeeEEe
Confidence 9998776 432110 00 11111111 10 123579999999999997 98877754
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.03 E-value=1.1e-09 Score=101.58 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=95.3
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC---ccccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP---HARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~---~~~~~f~~gvp~ 139 (367)
..+|+|+|||+|..+..+.+.+ .| ..+++-.|+..+-....-..+. ..+-.+..+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~----------------~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~--- 103 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAV----------------GP---EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG--- 103 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHh----------------CC---CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe---
Confidence 4799999999999988776433 12 3367888875432211111111 111123333
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
+...-.+|++++|++++..++||++. +..+|+...+-|+|||
T Consensus 104 d~~~~~~~~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk~gG 145 (231)
T TIGR02752 104 NAMELPFDDNSFDYVTIGFGLRNVPD--------------------------------------YMQVLREMYRVVKPGG 145 (231)
T ss_pred chhcCCCCCCCccEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCe
Confidence 23333467899999999999999652 2357888889999999
Q ss_pred eEEEEeecccCCCCCCCCCchhhHH----HHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEE
Q 017702 220 LMVLILAAVVPDGIPLSNSYVGVFN----NILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKM 295 (367)
Q Consensus 220 ~lvl~~~g~~~n~~~~~~~~~~~~~----~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~l 295 (367)
++++.-.+ .++... ....+ ..+...+..+...+........ ..-..+++.+|+++++++.| |++.++
T Consensus 146 ~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~ 216 (231)
T TIGR02752 146 KVVCLETS-QPTIPG-----FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEV 216 (231)
T ss_pred EEEEEECC-CCCChH-----HHHHHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEE
Confidence 99987766 443210 00000 0001111111111100000000 01234789999999999997 998877
Q ss_pred EEE
Q 017702 296 EKL 298 (367)
Q Consensus 296 E~~ 298 (367)
+.+
T Consensus 217 ~~~ 219 (231)
T TIGR02752 217 KSY 219 (231)
T ss_pred EEc
Confidence 665
No 12
>PRK08317 hypothetical protein; Provisional
Probab=98.99 E-value=1.3e-07 Score=86.81 Aligned_cols=220 Identities=16% Similarity=0.137 Sum_probs=120.0
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcC--CccccceeeccC
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSL--PHARKYFAAGLP 138 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l--~~~~~~f~~gvp 138 (367)
....+|+|+|||+|..+..+.+.. .| .-+++--|+..+.....-+.. ......|..+.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~----------------~~---~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d- 77 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRV----------------GP---EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD- 77 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc----------------CC---CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc-
Confidence 345799999999999888776333 11 225667776543222111110 01111233332
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
+....++++++|++++..++||+.+ +..+|+...+-|+||
T Consensus 78 --~~~~~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~g 117 (241)
T PRK08317 78 --ADGLPFPDGSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRPG 117 (241)
T ss_pred --cccCCCCCCCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcCC
Confidence 2333467789999999999999653 335788888999999
Q ss_pred ceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 219 GLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 219 G~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
|.+++.... .+... .. ......+..+...|.. .+ .- ..+..++.+++++.| |+...++.+
T Consensus 118 G~l~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~~---~~----------~~---~~~~~~~~~~l~~aG-f~~~~~~~~ 177 (241)
T PRK08317 118 GRVVVLDTD-WDTLV-WH-SGDRALMRKILNFWSD---HF----------AD---PWLGRRLPGLFREAG-LTDIEVEPY 177 (241)
T ss_pred cEEEEEecC-CCcee-ec-CCChHHHHHHHHHHHh---cC----------CC---CcHHHHHHHHHHHcC-CCceeEEEE
Confidence 999988754 21110 00 0111112222222221 11 11 234568999999997 988888777
Q ss_pred ecCCCCCCHHHHHHhHHhhhhhhh-hhccCHHHHHHHHHHHHHHHHhhhhHHHHhcCCeEEEEEEEEec
Q 017702 299 SQPRRRITANEYASGIRAGIDGLI-KKHFGDEFVDEIFNYFTTKVEENYSIIEEKIRNVSNLFISLKRF 366 (367)
Q Consensus 299 ~~p~~~~~~~~v~~~iRa~~~~~l-~~~~~~~~~de~f~ry~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (367)
..+.....+......+......+. ...++++-++++++..++..... ...-.+.++++.-|+
T Consensus 178 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~k 240 (241)
T PRK08317 178 TLIETDLKEADKGFGLIRAARRAVEAGGISADEADAWLADLAQLARAG------EFFFSVTGFLVVGRK 240 (241)
T ss_pred EEeccCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC------CEEEEEEEEEEEEeC
Confidence 654222233333333332222221 23467777888888777644321 112256666665544
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=98.99 E-value=2.1e-08 Score=98.98 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=92.5
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHH---HhhcCCc-cccceeec
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNT---LFKSLPH-ARKYFAAG 136 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~---lf~~l~~-~~~~f~~g 136 (367)
....+|+|+|||+|.++..+.+.. ..+|+--|+..+.-.. ..+.... .+-.|..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~---------------------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~ 175 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY---------------------GANVKGITLSPVQAARANALAAAQGLSDKVSFQVA 175 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc---------------------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc
Confidence 345799999999999998876422 1134555554322111 1111111 11234444
Q ss_pred cCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 137 LPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 137 vp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
. ..+.-+|++++|+++|..++|++. |...+|+.-.+-||
T Consensus 176 D---~~~~~~~~~~FD~V~s~~~~~h~~--------------------------------------d~~~~l~e~~rvLk 214 (340)
T PLN02244 176 D---ALNQPFEDGQFDLVWSMESGEHMP--------------------------------------DKRKFVQELARVAA 214 (340)
T ss_pred C---cccCCCCCCCccEEEECCchhccC--------------------------------------CHHHHHHHHHHHcC
Confidence 3 344456889999999999998854 23357888889999
Q ss_pred cCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEE
Q 017702 217 PGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKME 296 (367)
Q Consensus 217 pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE 296 (367)
|||+|++.... ..+..+... ... ..-...+..+.. .+.+| .+.+.+|+.+++++.| |+..+.+
T Consensus 215 pGG~lvi~~~~-~~~~~~~~~-~l~---~~~~~~~~~i~~----------~~~~p-~~~s~~~~~~~l~~aG-f~~v~~~ 277 (340)
T PLN02244 215 PGGRIIIVTWC-HRDLEPGET-SLK---PDEQKLLDKICA----------AYYLP-AWCSTSDYVKLAESLG-LQDIKTE 277 (340)
T ss_pred CCcEEEEEEec-ccccccccc-cCC---HHHHHHHHHHHh----------hccCC-CCCCHHHHHHHHHHCC-CCeeEee
Confidence 99999998876 433211100 000 001111222111 11222 2358999999999997 9887766
Q ss_pred EE
Q 017702 297 KL 298 (367)
Q Consensus 297 ~~ 298 (367)
.+
T Consensus 278 d~ 279 (340)
T PLN02244 278 DW 279 (340)
T ss_pred eC
Confidence 54
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.97 E-value=3.4e-09 Score=103.83 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=98.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc----CCcc-ccceeecc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS----LPHA-RKYFAAGL 137 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~----l~~~-~~~f~~gv 137 (367)
.-+|+|+|||+|..+..++.. .+ . +|+--|... .+-.-++. .... +-.|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~-----------------g~---~-~V~GiD~S~-~~l~q~~a~~~~~~~~~~i~~~~~- 179 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGA-----------------GA---K-LVVGIDPSQ-LFLCQFEAVRKLLGNDQRAHLLPL- 179 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHc-----------------CC---C-EEEEEcCCH-HHHHHHHHHHHhcCCCCCeEEEeC-
Confidence 469999999999999876521 12 3 467777443 22222221 1111 1223322
Q ss_pred CccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 138 PGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
++ +.+-.++++|+++|..++||.. |...+|+.-++.|+|
T Consensus 180 --d~-e~lp~~~~FD~V~s~~vl~H~~--------------------------------------dp~~~L~~l~~~Lkp 218 (322)
T PRK15068 180 --GI-EQLPALKAFDTVFSMGVLYHRR--------------------------------------SPLDHLKQLKDQLVP 218 (322)
T ss_pred --CH-HHCCCcCCcCEEEECChhhccC--------------------------------------CHHHHHHHHHHhcCC
Confidence 22 3333378999999999999854 333588899999999
Q ss_pred CceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEE
Q 017702 218 GGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEK 297 (367)
Q Consensus 218 GG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~ 297 (367)
||.|++..+...++... .+...+.+..+...++.||.+++..++++.| |++.+++.
T Consensus 219 GG~lvl~~~~i~~~~~~-----------------------~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~ 274 (322)
T PRK15068 219 GGELVLETLVIDGDENT-----------------------VLVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVD 274 (322)
T ss_pred CcEEEEEEEEecCCCcc-----------------------ccCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEe
Confidence 99999987651222110 0111112233444456799999999999997 99888765
Q ss_pred EecCCCCCCHHHHHHhHH
Q 017702 298 LSQPRRRITANEYASGIR 315 (367)
Q Consensus 298 ~~~p~~~~~~~~v~~~iR 315 (367)
.... ..+.+....|++
T Consensus 275 ~~~t--~~~eqr~t~w~~ 290 (322)
T PRK15068 275 VSVT--TTEEQRKTEWMT 290 (322)
T ss_pred CCCC--CccccccccCcc
Confidence 5322 122234455554
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.91 E-value=7.2e-08 Score=99.05 Aligned_cols=183 Identities=16% Similarity=0.263 Sum_probs=108.3
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc-CCc--cccceeeccC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS-LPH--ARKYFAAGLP 138 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~-l~~--~~~~f~~gvp 138 (367)
...+|+|+|||+|..++.+.+.. ..+++--|+...-- ...+. ... .+-.|..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~---------------------~~~v~gvDiS~~~l-~~A~~~~~~~~~~v~~~~~-- 321 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF---------------------DVHVVGIDLSVNMI-SFALERAIGRKCSVEFEVA-- 321 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc---------------------CCEEEEEECCHHHH-HHHHHHhhcCCCceEEEEc--
Confidence 34699999999998776654211 12577777753211 11111 111 11123333
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
++....+|++++|+++|..+++|+.+ ...+|+.-++-|+||
T Consensus 322 -d~~~~~~~~~~fD~I~s~~~l~h~~d--------------------------------------~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 322 -DCTKKTYPDNSFDVIYSRDTILHIQD--------------------------------------KPALFRSFFKWLKPG 362 (475)
T ss_pred -CcccCCCCCCCEEEEEECCcccccCC--------------------------------------HHHHHHHHHHHcCCC
Confidence 35555678899999999999999653 235888889999999
Q ss_pred ceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 219 GLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 219 G~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
|++++..+. +.+..+ . ..+...+. ..| +..++.+++.+++++.| |++...+.+
T Consensus 363 G~l~i~~~~-~~~~~~-~--------~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d~ 415 (475)
T PLN02336 363 GKVLISDYC-RSPGTP-S--------PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAEDR 415 (475)
T ss_pred eEEEEEEec-cCCCCC-c--------HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceeeeeecc
Confidence 999999887 543221 0 11111111 111 24678999999999997 999866544
Q ss_pred ecCCCCCCHHHHHHhHHhhhhhhh------hhccCHHHHHHHHHHHHHHH
Q 017702 299 SQPRRRITANEYASGIRAGIDGLI------KKHFGDEFVDEIFNYFTTKV 342 (367)
Q Consensus 299 ~~p~~~~~~~~v~~~iRa~~~~~l------~~~~~~~~~de~f~ry~~~~ 342 (367)
. ..+..++..+...+. ...++++..+.+...+.+.+
T Consensus 416 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (475)
T PLN02336 416 T--------DQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKL 457 (475)
T ss_pred h--------HHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHH
Confidence 2 233333333322221 12356666666655555543
No 16
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.90 E-value=1.8e-08 Score=94.27 Aligned_cols=160 Identities=21% Similarity=0.287 Sum_probs=92.9
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc---c-ccceeecc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH---A-RKYFAAGL 137 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~---~-~~~f~~gv 137 (367)
...+|+|+|||+|..+..+.+.+ . .| ..+++--|+..+--...=+.+.. . +--|..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~--------~-------~p---~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~-- 112 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI--------N-------QP---NVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC-- 112 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc--------C-------CC---CCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE--
Confidence 34689999999999988776433 0 23 44677778753221111111111 1 112333
Q ss_pred CccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 138 PGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
+++..-.++ +.|+++|++++||++. .|...+|+.-.+-|+|
T Consensus 113 -~d~~~~~~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~Lkp 153 (239)
T TIGR00740 113 -NDIRHVEIK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNP 153 (239)
T ss_pred -CChhhCCCC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCC
Confidence 344433333 5789999999999752 1445689999999999
Q ss_pred CceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHH-cCCCCHhhh----hccCCCcccCCHHHHHHHHHhCCceE
Q 017702 218 GGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAK-MGVLSEEKV----DSFNLPTYNATPKELEAIIRTNGNFT 291 (367)
Q Consensus 218 GG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~-eG~i~~~~~----d~f~~P~y~~s~eE~~~~l~~~g~F~ 291 (367)
||++++.-.. ..+... ..+.+...+..+.. .| .+.+++ +.+.-.....|++|+.+++++.| |+
T Consensus 154 gG~l~i~d~~-~~~~~~--------~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 154 NGVLVLSEKF-RFEDTK--------INHLLIDLHHQFKRANG-YSELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred CeEEEEeecc-cCCCHh--------HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 9999988654 332211 11233333333332 44 344433 22222334568899999998887 64
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=1.1e-08 Score=95.65 Aligned_cols=165 Identities=21% Similarity=0.255 Sum_probs=103.1
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccc---cceeeccC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHAR---KYFAAGLP 138 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~---~~f~~gvp 138 (367)
+..+|||+|||||.-++.+.+.+ . .-+|+.-|..++-.+.--+.+.... -.|+.|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~--------g------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~-- 108 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV--------G------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG-- 108 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc--------C------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEe--
Confidence 56999999999999999887444 1 1257787877655444333333211 224444
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
...+-.||++|+|++.+++.||++.+++ ..|+--++-||||
T Consensus 109 -dAe~LPf~D~sFD~vt~~fglrnv~d~~--------------------------------------~aL~E~~RVlKpg 149 (238)
T COG2226 109 -DAENLPFPDNSFDAVTISFGLRNVTDID--------------------------------------KALKEMYRVLKPG 149 (238)
T ss_pred -chhhCCCCCCccCEEEeeehhhcCCCHH--------------------------------------HHHHHHHHhhcCC
Confidence 4677778999999999999999988655 3677777889999
Q ss_pred ceEEEEeecccCCCCCCCCCchhhHHHHHHH-HHH---HHHHcCCCCHhhhh-ccCCCcccCCHHHHHHHHHhCCceEEe
Q 017702 219 GLMVLILAAVVPDGIPLSNSYVGVFNNILGS-CFN---DLAKMGVLSEEKVD-SFNLPTYNATPKELEAIIRTNGNFTIE 293 (367)
Q Consensus 219 G~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~-al~---~m~~eG~i~~~~~d-~f~~P~y~~s~eE~~~~l~~~g~F~I~ 293 (367)
|++++.=++ .++..+.. ...+..... ++- .++.. +.+++. -....--+|+.+++.+.+++.| |+..
T Consensus 150 G~~~vle~~-~p~~~~~~----~~~~~~~~~~v~P~~g~~~~~---~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i 220 (238)
T COG2226 150 GRLLVLEFS-KPDNPVLR----KAYILYYFKYVLPLIGKLVAK---DAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEV 220 (238)
T ss_pred eEEEEEEcC-CCCchhhH----HHHHHHHHHhHhhhhceeeec---ChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEE
Confidence 999988888 55432111 001111111 111 11110 011111 0112233799999999999987 8765
Q ss_pred EEE
Q 017702 294 KME 296 (367)
Q Consensus 294 ~lE 296 (367)
..+
T Consensus 221 ~~~ 223 (238)
T COG2226 221 RYE 223 (238)
T ss_pred eeE
Confidence 543
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.83 E-value=7.4e-08 Score=94.01 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=95.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcC----Ccc-ccceeecc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSL----PHA-RKYFAAGL 137 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l----~~~-~~~f~~gv 137 (367)
..+|+|+|||+|..+..++.. .+ . .|+--|... .+-.-|+.+ ... +..+.
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~-----------------g~---~-~v~GiDpS~-~ml~q~~~~~~~~~~~~~v~~~--- 176 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGH-----------------GA---K-SLVGIDPTV-LFLCQFEAVRKLLDNDKRAILE--- 176 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHc-----------------CC---C-EEEEEcCCH-HHHHHHHHHHHHhccCCCeEEE---
Confidence 469999999999987665411 11 2 344445432 221112111 111 11121
Q ss_pred CccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 138 PGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
+++ .+.+-+.+++|+|+|+.++||+.+ ...+|+.-++-|+|
T Consensus 177 ~~~-ie~lp~~~~FD~V~s~gvL~H~~d--------------------------------------p~~~L~el~r~Lkp 217 (314)
T TIGR00452 177 PLG-IEQLHELYAFDTVFSMGVLYHRKS--------------------------------------PLEHLKQLKHQLVI 217 (314)
T ss_pred ECC-HHHCCCCCCcCEEEEcchhhccCC--------------------------------------HHHHHHHHHHhcCC
Confidence 122 234445578999999999999542 22488999999999
Q ss_pred CceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEE
Q 017702 218 GGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEK 297 (367)
Q Consensus 218 GG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~ 297 (367)
||.|++.+....++... .+...+....+...++.||.+++..++++.| |+..++..
T Consensus 218 GG~Lvletl~i~g~~~~-----------------------~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~ 273 (314)
T TIGR00452 218 KGELVLETLVIDGDLNT-----------------------VLVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILD 273 (314)
T ss_pred CCEEEEEEEEecCcccc-----------------------ccCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEe
Confidence 99999998751222110 0011112233444567899999999999997 98887765
Q ss_pred EecCCCCCCHHHHHHhHH
Q 017702 298 LSQPRRRITANEYASGIR 315 (367)
Q Consensus 298 ~~~p~~~~~~~~v~~~iR 315 (367)
....+ ........|++
T Consensus 274 ~~~tt--~~eqr~t~w~~ 289 (314)
T TIGR00452 274 VLKTT--PEEQRKTDWIL 289 (314)
T ss_pred ccCCC--HHHhhhhhhhh
Confidence 43331 12234556665
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.81 E-value=5e-09 Score=98.14 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=66.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC---ccccceeecc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP---HARKYFAAGL 137 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~---~~~~~f~~gv 137 (367)
....+|+|+|||||..|+.+...+ .| ..+|+--|...+--..-=+.+. ..+-.|+.|+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~----------------~~---~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~d 106 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV----------------GP---NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGD 106 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS----------------S------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-B
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC----------------CC---ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcC
Confidence 345799999999999998776322 22 3467777776533222111111 1122355554
Q ss_pred CccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 138 PGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
..+--+|++|+|.+.+++.+|-+. |..+.|+.-.+-|||
T Consensus 107 ---a~~lp~~d~sfD~v~~~fglrn~~--------------------------------------d~~~~l~E~~RVLkP 145 (233)
T PF01209_consen 107 ---AEDLPFPDNSFDAVTCSFGLRNFP--------------------------------------DRERALREMYRVLKP 145 (233)
T ss_dssp ---TTB--S-TT-EEEEEEES-GGG-S--------------------------------------SHHHHHHHHHHHEEE
T ss_pred ---HHHhcCCCCceeEEEHHhhHHhhC--------------------------------------CHHHHHHHHHHHcCC
Confidence 445557999999999999999865 334577888899999
Q ss_pred CceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHh--hhhcc-CCCcccCCHHHHHHHHHhCCceEEeE
Q 017702 218 GGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEE--KVDSF-NLPTYNATPKELEAIIRTNGNFTIEK 294 (367)
Q Consensus 218 GG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~--~~d~f-~~P~y~~s~eE~~~~l~~~g~F~I~~ 294 (367)
||++++.=++ +++.. ....++......+.=++ -.+++.+ .+... ..---+|+.+|+.+++++.| |+..+
T Consensus 146 GG~l~ile~~-~p~~~-----~~~~~~~~y~~~ilP~~-g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~ 217 (233)
T PF01209_consen 146 GGRLVILEFS-KPRNP-----LLRALYKFYFKYILPLI-GRLLSGDREAYRYLPESIRRFPSPEELKELLEEAG-FKNVE 217 (233)
T ss_dssp EEEEEEEEEE-B-SSH-----HHHHHHHH---------------------------------------------------
T ss_pred CeEEEEeecc-CCCCc-----hhhceeeeeeccccccc-ccccccccccccccccccccccccccccccccccc-ccccc
Confidence 9999998888 66531 11122221111110000 0122221 11111 12224689999999999997 87655
Q ss_pred EEE
Q 017702 295 MEK 297 (367)
Q Consensus 295 lE~ 297 (367)
.+.
T Consensus 218 ~~~ 220 (233)
T PF01209_consen 218 YRP 220 (233)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.79 E-value=1.7e-07 Score=88.57 Aligned_cols=159 Identities=17% Similarity=0.283 Sum_probs=92.0
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc----cccceeecc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH----ARKYFAAGL 137 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~----~~~~f~~gv 137 (367)
...+|+|+|||+|..|..+.+. ..+|+..|+...--...-+.... .+-.|..+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~----------------------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d 101 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL----------------------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCA 101 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc----------------------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcC
Confidence 4579999999999988877521 12567777754221111111111 111233333
Q ss_pred Ccccccc-CCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 138 PGSFHSR-LFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 138 p~SFy~~-l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
..+- -++++++|++++..++||+.+.+ .+|+.-++-|+
T Consensus 102 ---~~~l~~~~~~~fD~V~~~~vl~~~~~~~--------------------------------------~~l~~~~~~Lk 140 (255)
T PRK11036 102 ---AQDIAQHLETPVDLILFHAVLEWVADPK--------------------------------------SVLQTLWSVLR 140 (255)
T ss_pred ---HHHHhhhcCCCCCEEEehhHHHhhCCHH--------------------------------------HHHHHHHHHcC
Confidence 2211 14678999999999999976421 36777888999
Q ss_pred cCceEEEEeecccCCCCCCCCCchhhHHH-HHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEE
Q 017702 217 PGGLMVLILAAVVPDGIPLSNSYVGVFNN-ILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKM 295 (367)
Q Consensus 217 pGG~lvl~~~g~~~n~~~~~~~~~~~~~~-~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~l 295 (367)
|||++++.+.. ... .+++ .+..-+. .+..|+...+.. ...|-+..+++++.+++++.| |+++..
T Consensus 141 pgG~l~i~~~n-~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~ 205 (255)
T PRK11036 141 PGGALSLMFYN-ANG----------LLMHNMVAGNFD-YVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGK 205 (255)
T ss_pred CCeEEEEEEEC-ccH----------HHHHHHHccChH-HHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeee
Confidence 99999988765 211 0011 1111111 112232211111 123556789999999999997 999765
Q ss_pred EEE
Q 017702 296 EKL 298 (367)
Q Consensus 296 E~~ 298 (367)
.-+
T Consensus 206 ~gi 208 (255)
T PRK11036 206 TGV 208 (255)
T ss_pred eeE
Confidence 443
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.79 E-value=1.1e-07 Score=86.60 Aligned_cols=138 Identities=19% Similarity=0.280 Sum_probs=80.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccc-eeeccCccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKY-FAAGLPGSF 141 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~-f~~gvp~SF 141 (367)
..+|+|+|||+|.+++.+.+. -.+|+--|+..+- -...+........ .+..+.+++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~----------------------g~~V~gvD~S~~~-i~~a~~~~~~~~~~~v~~~~~d~ 87 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN----------------------GFDVTAWDKNPMS-IANLERIKAAENLDNLHTAVVDL 87 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC----------------------CCEEEEEeCCHHH-HHHHHHHHHHcCCCcceEEecCh
Confidence 479999999999999887631 1245555664321 1111111000000 011111222
Q ss_pred cccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceE
Q 017702 142 HSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
.. +-+++++|+++|+.++||++. .|...+++.-++-|+|||++
T Consensus 88 ~~-~~~~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 88 NN-LTFDGEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred hh-CCcCCCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEE
Confidence 22 223467999999999999652 15567899999999999996
Q ss_pred EE-EeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEE
Q 017702 222 VL-ILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEK 297 (367)
Q Consensus 222 vl-~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~ 297 (367)
++ ..+. .+..+.. . . |.+..+.+|+.+.++ | |++.+.+.
T Consensus 131 ~~~~~~~--~~~~~~~--------------------~-----------~-~~~~~~~~el~~~~~--~-~~~~~~~~ 170 (197)
T PRK11207 131 LIVAAMD--TADYPCT--------------------V-----------G-FPFAFKEGELRRYYE--G-WEMVKYNE 170 (197)
T ss_pred EEEEEec--CCCCCCC--------------------C-----------C-CCCccCHHHHHHHhC--C-CeEEEeeC
Confidence 55 4443 2211100 0 1 235578999999886 4 98877754
No 22
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.78 E-value=2.1e-07 Score=85.84 Aligned_cols=140 Identities=15% Similarity=0.168 Sum_probs=85.6
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc----cccceeeccCcc
Q 017702 65 KIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH----ARKYFAAGLPGS 140 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~----~~~~f~~gvp~S 140 (367)
+|+|+|||+|..+..+.+.. | ..+++-.|+..+.....-+.+.. .+--|..+.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-----------------~---~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d--- 58 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-----------------P---HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRD--- 58 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-----------------C---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecc---
Confidence 69999999999887665322 1 22455555543221111111110 111222222
Q ss_pred ccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCce
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGL 220 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 220 (367)
+....+ ++++|+++|..++|++. |+..+|+.-++-|+|||+
T Consensus 59 ~~~~~~-~~~fD~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~LkpgG~ 99 (224)
T smart00828 59 SAKDPF-PDTYDLVFGFEVIHHIK--------------------------------------DKMDLFSNISRHLKDGGH 99 (224)
T ss_pred cccCCC-CCCCCEeehHHHHHhCC--------------------------------------CHHHHHHHHHHHcCCCCE
Confidence 222223 46899999999999954 344689999999999999
Q ss_pred EEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 221 MVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 221 lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
+++.... .+.... ... -..+.|+++.+++.+.+++.| |++.+.+.+
T Consensus 100 l~i~~~~-~~~~~~-------------------------~~~-----~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~ 145 (224)
T smart00828 100 LVLADFI-ANLLSA-------------------------IEH-----EETTSYLVTREEWAELLARNN-LRVVEGVDA 145 (224)
T ss_pred EEEEEcc-cccCcc-------------------------ccc-----cccccccCCHHHHHHHHHHCC-CeEEEeEEC
Confidence 9988764 221000 000 012445899999999999987 999887665
No 23
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.76 E-value=8.8e-07 Score=88.86 Aligned_cols=187 Identities=10% Similarity=0.133 Sum_probs=105.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFH 142 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy 142 (367)
..+|+|+|||+|..++.+.+.. ..+|+--|+..+-....-+......--+..+. +
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~---------------------g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D----~ 222 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHY---------------------GVSVVGVTISAEQQKLAQERCAGLPVEIRLQD----Y 222 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHC---------------------CCEEEEEeCCHHHHHHHHHHhccCeEEEEECc----h
Confidence 4699999999999888775321 12456666654332221111111111122222 2
Q ss_pred ccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEE
Q 017702 143 SRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMV 222 (367)
Q Consensus 143 ~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 222 (367)
..+ ++++|.++|...++|+.. +++..+++.-.+-|+|||+++
T Consensus 223 ~~l--~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 223 RDL--NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred hhc--CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence 222 578999999999888531 245568889999999999999
Q ss_pred EEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCC-cccCCHHHHHHHHHhCCceEEeEEEEEecC
Q 017702 223 LILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLP-TYNATPKELEAIIRTNGNFTIEKMEKLSQP 301 (367)
Q Consensus 223 l~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P-~y~~s~eE~~~~l~~~g~F~I~~lE~~~~p 301 (367)
+...+ .++..... ..-++.+.+| -+.|+.+++.+.++. .|+|..++.+...
T Consensus 265 l~~i~-~~~~~~~~-------------------------~~~i~~yifp~g~lps~~~i~~~~~~--~~~v~d~~~~~~h 316 (383)
T PRK11705 265 LHTIG-SNKTDTNV-------------------------DPWINKYIFPNGCLPSVRQIAQASEG--LFVMEDWHNFGAD 316 (383)
T ss_pred EEEcc-CCCCCCCC-------------------------CCCceeeecCCCcCCCHHHHHHHHHC--CcEEEEEecChhh
Confidence 99887 44321000 0112334455 367899999998763 4999888765322
Q ss_pred CCCCCHHHHHHhHHhhhh--hhhhhccCHHHHHHHHHHHHHHHHhh
Q 017702 302 RRRITANEYASGIRAGID--GLIKKHFGDEFVDEIFNYFTTKVEEN 345 (367)
Q Consensus 302 ~~~~~~~~v~~~iRa~~~--~~l~~~~~~~~~de~f~ry~~~~~~~ 345 (367)
..+.+..|.+.+-. +-+...+++.+.+ .+.-|-...+..
T Consensus 317 ----y~~TL~~W~~~f~~~~~~~~~~~~~~~~r-~w~~yl~~~~~~ 357 (383)
T PRK11705 317 ----YDRTLMAWHENFEAAWPELADNYSERFYR-MWRYYLLSCAGA 357 (383)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHH
Confidence 23444445443332 1122245544333 344444433333
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.73 E-value=3.1e-08 Score=77.62 Aligned_cols=95 Identities=27% Similarity=0.349 Sum_probs=63.0
Q ss_pred eeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccccccCC
Q 017702 67 ADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFHSRLF 146 (367)
Q Consensus 67 aD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy~~l~ 146 (367)
+|+|||+|.++..+.+. + ..+++-.|....--...-+.......-+..+ ++..--+
T Consensus 1 LdiG~G~G~~~~~l~~~------------------~---~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~ 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR------------------G---GASVTGIDISEEMLEQARKRLKNEGVSFRQG---DAEDLPF 56 (95)
T ss_dssp EEET-TTSHHHHHHHHT------------------T---TCEEEEEES-HHHHHHHHHHTTTSTEEEEES---BTTSSSS
T ss_pred CEecCcCCHHHHHHHhc------------------c---CCEEEEEeCCHHHHHHHHhcccccCchheee---hHHhCcc
Confidence 79999999999988632 0 1257777776432222222222221124444 4566688
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEE
Q 017702 147 PRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVL 223 (367)
Q Consensus 147 P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 223 (367)
|++|+|++++..++||+. |...+|+..++-|||||++++
T Consensus 57 ~~~sfD~v~~~~~~~~~~--------------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 PDNSFDVVFSNSVLHHLE--------------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -TT-EEEEEEESHGGGSS--------------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccceeecc--------------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999972 566799999999999999986
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.72 E-value=1.9e-07 Score=87.97 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=89.1
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc-CC---cc-ccceeec
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS-LP---HA-RKYFAAG 136 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~-l~---~~-~~~f~~g 136 (367)
...+|+|+|||+|.++..+...+ . .| ..+++.-|....- -...+. +. .. +--+..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~--------~-------~~---~~~v~gvD~S~~m-l~~A~~~~~~~~~~~~v~~~~- 115 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNI--------H-------HD---NCKIIAIDNSPAM-IERCRRHIDAYKAPTPVDVIE- 115 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhc--------C-------CC---CCeEEEEeCCHHH-HHHHHHHHHhcCCCCCeEEEe-
Confidence 34789999999999988765322 0 13 3467777775322 112111 11 11 112222
Q ss_pred cCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 137 LPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 137 vp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
+++.+- |....|+++++.++||++. . +...+|+.-++-|+
T Consensus 116 --~d~~~~--~~~~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~Lk 155 (247)
T PRK15451 116 --GDIRDI--AIENASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLN 155 (247)
T ss_pred --CChhhC--CCCCCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcC
Confidence 333322 3345899999999999762 1 33468888899999
Q ss_pred cCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhcc----CCCcccCCHHHHHHHHHhCC
Q 017702 217 PGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSF----NLPTYNATPKELEAIIRTNG 288 (367)
Q Consensus 217 pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f----~~P~y~~s~eE~~~~l~~~g 288 (367)
|||.|++.-.- ..+... ..+.+...|..+....-.+++++..+ .--...-|+++..++|++.|
T Consensus 156 pGG~l~l~e~~-~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG 222 (247)
T PRK15451 156 PGGALVLSEKF-SFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG 222 (247)
T ss_pred CCCEEEEEEec-CCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC
Confidence 99999997533 222111 11334445555444444555555321 11111237888888888886
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.71 E-value=5.3e-08 Score=95.33 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=90.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcC---Cc-cccceeeccC
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSL---PH-ARKYFAAGLP 138 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l---~~-~~~~f~~gvp 138 (367)
..+|+|+|||+|..+..+.. + ..+|+--|....-....-+.. +. .+-.|..+
T Consensus 132 g~~ILDIGCG~G~~s~~La~-------------------~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~-- 187 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR-------------------M---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT-- 187 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH-------------------c---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec--
Confidence 46999999999998876641 0 225666676543222111111 00 01113332
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
++.+-.++++++|+++|..++||+.+. ..||+..++-||||
T Consensus 188 -dae~l~~~~~~FD~Vi~~~vLeHv~d~--------------------------------------~~~L~~l~r~LkPG 228 (322)
T PLN02396 188 -TAEKLADEGRKFDAVLSLEVIEHVANP--------------------------------------AEFCKSLSALTIPN 228 (322)
T ss_pred -CHHHhhhccCCCCEEEEhhHHHhcCCH--------------------------------------HHHHHHHHHHcCCC
Confidence 233323467899999999999996642 35899999999999
Q ss_pred ceEEEEeecccCCCCCCCCCchhhHHHHHH--HHHHHHHHcCCCCHhhhhccCCCc-ccCCHHHHHHHHHhCCceEEeEE
Q 017702 219 GLMVLILAAVVPDGIPLSNSYVGVFNNILG--SCFNDLAKMGVLSEEKVDSFNLPT-YNATPKELEAIIRTNGNFTIEKM 295 (367)
Q Consensus 219 G~lvl~~~g~~~n~~~~~~~~~~~~~~~l~--~al~~m~~eG~i~~~~~d~f~~P~-y~~s~eE~~~~l~~~g~F~I~~l 295 (367)
|++++.+.. +... ..+..+. .-+...+..| ...| .+.+++|+.++++..| |++..+
T Consensus 229 G~liist~n-r~~~---------~~~~~i~~~eyi~~~lp~g----------th~~~~f~tp~eL~~lL~~aG-f~i~~~ 287 (322)
T PLN02396 229 GATVLSTIN-RTMR---------AYASTIVGAEYILRWLPKG----------THQWSSFVTPEELSMILQRAS-VDVKEM 287 (322)
T ss_pred cEEEEEECC-cCHH---------HHHHhhhhHHHHHhcCCCC----------CcCccCCCCHHHHHHHHHHcC-CeEEEE
Confidence 999999876 3210 0001010 0011111111 1112 3789999999999997 999877
Q ss_pred EEE
Q 017702 296 EKL 298 (367)
Q Consensus 296 E~~ 298 (367)
.-+
T Consensus 288 ~G~ 290 (322)
T PLN02396 288 AGF 290 (322)
T ss_pred eee
Confidence 544
No 27
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.70 E-value=1.6e-07 Score=86.62 Aligned_cols=164 Identities=19% Similarity=0.242 Sum_probs=94.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc----cccceeeccC
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH----ARKYFAAGLP 138 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~----~~~~f~~gvp 138 (367)
..+|+|+|||+|..+..+.... .+ ..+++..|+..+-....=+.+.. .+-.|..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~----------------~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~--- 109 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV----------------GK---TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ--- 109 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc----------------CC---CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe---
Confidence 4799999999999888776332 11 23678888864322222111111 1112332
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
+++.+..++++++|++++++++|++++. ..+|+...+-|+||
T Consensus 110 ~d~~~~~~~~~~~D~I~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~~g 151 (239)
T PRK00216 110 GDAEALPFPDNSFDAVTIAFGLRNVPDI--------------------------------------DKALREMYRVLKPG 151 (239)
T ss_pred cccccCCCCCCCccEEEEecccccCCCH--------------------------------------HHHHHHHHHhccCC
Confidence 2344444677899999999999986542 24788888999999
Q ss_pred ceEEEEeecccCCCCCCCCCchhhHHHHHHHHHH--------HHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCce
Q 017702 219 GLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFN--------DLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNF 290 (367)
Q Consensus 219 G~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~--------~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F 290 (367)
|++++.... .++... +..+.+.+. .+........+.+. ..--.+++.+++..++++.| |
T Consensus 152 G~li~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG-f 218 (239)
T PRK00216 152 GRLVILEFS-KPTNPP---------LKKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG-F 218 (239)
T ss_pred cEEEEEEec-CCCchH---------HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-C
Confidence 999887665 333210 111111111 11111100000000 00013579999999999997 9
Q ss_pred EEeEEEEEe
Q 017702 291 TIEKMEKLS 299 (367)
Q Consensus 291 ~I~~lE~~~ 299 (367)
++.+...+.
T Consensus 219 ~~~~~~~~~ 227 (239)
T PRK00216 219 ERVRYRNLT 227 (239)
T ss_pred ceeeeeeee
Confidence 988776653
No 28
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=1.2e-07 Score=87.33 Aligned_cols=195 Identities=16% Similarity=0.266 Sum_probs=118.2
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHH---------HHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcccc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAI---------ELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARK 131 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i---------~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~ 131 (367)
...-.++|+|||-|..+..+...-++.| .+.+++. ++| .++...+.-|=.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~----qdp-~i~~~~~v~DEE---------------- 129 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA----QDP-SIETSYFVGDEE---------------- 129 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc----CCC-ceEEEEEecchh----------------
Confidence 3467899999999999988875443322 1122211 122 122222222221
Q ss_pred ceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHH
Q 017702 132 YFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNAR 211 (367)
Q Consensus 132 ~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R 211 (367)
|.. |-.+|+|+++|+-++||..++|. -...+
T Consensus 130 ---------~Ld--f~ens~DLiisSlslHW~NdLPg--------------------------------------~m~~c 160 (325)
T KOG2940|consen 130 ---------FLD--FKENSVDLIISSLSLHWTNDLPG--------------------------------------SMIQC 160 (325)
T ss_pred ---------ccc--ccccchhhhhhhhhhhhhccCch--------------------------------------HHHHH
Confidence 111 45699999999999999999995 35567
Q ss_pred HHhhccCceEEEEeecccCCCCCCCCCchhhHHHH-HHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCce
Q 017702 212 AEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNI-LGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNF 290 (367)
Q Consensus 212 a~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~-l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F 290 (367)
...|||.|.|+.+++| ++. ++++ ..-.|.+|..+|-|+. -..| |-...++-.+|...| |
T Consensus 161 k~~lKPDg~Fiasmlg--gdT----------LyELR~slqLAelER~GGiSp-----hiSP--f~qvrDiG~LL~rAG-F 220 (325)
T KOG2940|consen 161 KLALKPDGLFIASMLG--GDT----------LYELRCSLQLAELEREGGISP-----HISP--FTQVRDIGNLLTRAG-F 220 (325)
T ss_pred HHhcCCCccchhHHhc--ccc----------HHHHHHHhhHHHHHhccCCCC-----CcCh--hhhhhhhhhHHhhcC-c
Confidence 7899999999999999 331 2331 2334668888888763 1222 335677888888887 8
Q ss_pred EEeEEEEEecCCCCCCHHHHHHhHHhhhhh--hhh--hccCHHHHHHHHHHHHHHHHhh
Q 017702 291 TIEKMEKLSQPRRRITANEYASGIRAGIDG--LIK--KHFGDEFVDEIFNYFTTKVEEN 345 (367)
Q Consensus 291 ~I~~lE~~~~p~~~~~~~~v~~~iRa~~~~--~l~--~~~~~~~~de~f~ry~~~~~~~ 345 (367)
....+.+-+..-.+...-.+...+++.++. .+. +++.++.+-.--.-|.+.++..
T Consensus 221 ~m~tvDtDEi~v~Yp~mfeLm~dLq~MgEsn~~~~Rn~~l~Ret~vAaaAiY~smya~e 279 (325)
T KOG2940|consen 221 SMLTVDTDEIVVGYPRMFELMEDLQGMGESNAALNRNAILNRETMVAAAAIYQSMYATE 279 (325)
T ss_pred ccceecccceeecCchHHHHHHHHHhhcccchhhccCccccHHHHHHHHHHHHHHhcCC
Confidence 776654432221122334556667776642 222 3556666666566666666544
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.69 E-value=2.2e-07 Score=91.60 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=89.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSF 141 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SF 141 (367)
...+|+|+|||+|..++.+.+.. + ..+++..|+..+-....-+.....+--+ +.++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-----------------~---~~~VtgVD~S~~mL~~A~~k~~~~~i~~---i~gD~ 169 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-----------------D---AKNVTILDQSPHQLAKAKQKEPLKECKI---IEGDA 169 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-----------------C---CCEEEEEECCHHHHHHHHHhhhccCCeE---EeccH
Confidence 34799999999999888765322 1 2367778875433222111111111123 33344
Q ss_pred cccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceE
Q 017702 142 HSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
...-++++++|+++|+.++|++.+ ....|+.-.+-|+|||++
T Consensus 170 e~lp~~~~sFDvVIs~~~L~~~~d--------------------------------------~~~~L~e~~rvLkPGG~L 211 (340)
T PLN02490 170 EDLPFPTDYADRYVSAGSIEYWPD--------------------------------------PQRGIKEAYRVLKIGGKA 211 (340)
T ss_pred HhCCCCCCceeEEEEcChhhhCCC--------------------------------------HHHHHHHHHHhcCCCcEE
Confidence 444567899999999999998542 124688888999999999
Q ss_pred EEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 222 VLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 222 vl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
++.... .++. + +...+.+ .-..+++.+|+.+++++.| |+..+++..
T Consensus 212 vIi~~~-~p~~-----------~--~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i 257 (340)
T PLN02490 212 CLIGPV-HPTF-----------W--LSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRI 257 (340)
T ss_pred EEEEec-Ccch-----------h--HHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEc
Confidence 876443 2210 0 0000000 0112579999999999997 988777654
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.69 E-value=6.1e-07 Score=81.85 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC-ccccceeeccCcc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP-HARKYFAAGLPGS 140 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~-~~~~~f~~gvp~S 140 (367)
+..+|+|+|||+|..+..+.... .+ ..+++.-|....-....-+.+. ..+-.|.. ++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~----------------~~---~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~---~d 96 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA----------------PD---RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQ---AD 96 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc----------------CC---CceEEEEECCHHHHHHHHHHhccCCCceEEe---cc
Confidence 45799999999999888775332 01 1357777764321111111111 11112222 33
Q ss_pred ccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCce
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGL 220 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 220 (367)
+.+..++++++|+++++..+|+..+ ...+|+...+.|+|||+
T Consensus 97 ~~~~~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~ 138 (223)
T TIGR01934 97 AEALPFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGR 138 (223)
T ss_pred hhcCCCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcE
Confidence 4454567789999999999998543 33588899999999999
Q ss_pred EEEEeecccCCCCCCCCCchhhHHHHHHHHHHH-HHH--cCCCCHhhhhccC----CCcccCCHHHHHHHHHhCCceEEe
Q 017702 221 MVLILAAVVPDGIPLSNSYVGVFNNILGSCFND-LAK--MGVLSEEKVDSFN----LPTYNATPKELEAIIRTNGNFTIE 293 (367)
Q Consensus 221 lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~-m~~--eG~i~~~~~d~f~----~P~y~~s~eE~~~~l~~~g~F~I~ 293 (367)
+++.... .+... . +..+.+.+.. |.. .+..+.. .+.+. ...-+++.+|+++++++.| |++.
T Consensus 139 l~~~~~~-~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~ 206 (223)
T TIGR01934 139 LVILEFS-KPANA--------L-LKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEV 206 (223)
T ss_pred EEEEEec-CCCch--------h-hHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccc
Confidence 9987654 33211 1 1212222211 110 0101000 01110 0112578999999999997 9887
Q ss_pred EEEEE
Q 017702 294 KMEKL 298 (367)
Q Consensus 294 ~lE~~ 298 (367)
..+..
T Consensus 207 ~~~~~ 211 (223)
T TIGR01934 207 RYRSL 211 (223)
T ss_pred eeeee
Confidence 77654
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.63 E-value=7.4e-07 Score=81.02 Aligned_cols=136 Identities=17% Similarity=0.239 Sum_probs=81.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc---ccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA---RKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~---~~~f~~gvp~ 139 (367)
+.+|+|+|||+|.+++.+.+. ..+|+--|+..+--. ..+..... .-.+..+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~----------------------g~~V~~iD~s~~~l~-~a~~~~~~~~~~v~~~~~d-- 85 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA----------------------GYDVRAWDHNPASIA-SVLDMKARENLPLRTDAYD-- 85 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC----------------------CCeEEEEECCHHHHH-HHHHHHHHhCCCceeEecc--
Confidence 479999999999999988621 124666677532211 11111000 00111111
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
. ....+++++|+++|+.++||++. .++..+++..++-|+|||
T Consensus 86 -~-~~~~~~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG 127 (195)
T TIGR00477 86 -I-NAAALNEDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRPGG 127 (195)
T ss_pred -c-hhccccCCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCCCc
Confidence 1 11123468999999999999652 255678999999999999
Q ss_pred eEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEE
Q 017702 220 LMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEK 297 (367)
Q Consensus 220 ~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~ 297 (367)
++++...- ..+..+ .| ..+-|-.+++|+++.+.. |++.+.+.
T Consensus 128 ~lli~~~~-~~~~~~----------------------~~----------~~~~~~~~~~el~~~f~~---~~~~~~~e 169 (195)
T TIGR00477 128 YNLIVAAM-DTADYP----------------------CH----------MPFSFTFKEDELRQYYAD---WELLKYNE 169 (195)
T ss_pred EEEEEEec-ccCCCC----------------------CC----------CCcCccCCHHHHHHHhCC---CeEEEeec
Confidence 96655433 222110 01 112356789999998853 88887763
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.59 E-value=6e-07 Score=85.48 Aligned_cols=151 Identities=16% Similarity=0.195 Sum_probs=87.0
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc---CCccccceeeccC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS---LPHARKYFAAGLP 138 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~---l~~~~~~f~~gvp 138 (367)
..-+|+|+|||+|..++.+.... .+ .-+|+--|...+-....-+. ....+-.|..+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~----------------g~---~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~-- 135 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV----------------GP---TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLG-- 135 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh----------------CC---CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEc--
Confidence 45799999999998877554222 11 22577777753221111111 11111123333
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
++..--+|++++|+++|+.++||..+ ....|+.-.+-|+||
T Consensus 136 -d~~~l~~~~~~fD~Vi~~~v~~~~~d--------------------------------------~~~~l~~~~r~LkpG 176 (272)
T PRK11873 136 -EIEALPVADNSVDVIISNCVINLSPD--------------------------------------KERVFKEAFRVLKPG 176 (272)
T ss_pred -chhhCCCCCCceeEEEEcCcccCCCC--------------------------------------HHHHHHHHHHHcCCC
Confidence 33333457889999999999998432 224677777889999
Q ss_pred ceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEE
Q 017702 219 GLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEK 297 (367)
Q Consensus 219 G~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~ 297 (367)
|+|++.-.. .....+ +.+...+. +.. |. .....+.+|+.+++++.| |...++..
T Consensus 177 G~l~i~~~~-~~~~~~----------~~~~~~~~-~~~-~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i~~ 230 (272)
T PRK11873 177 GRFAISDVV-LRGELP----------EEIRNDAE-LYA-GC-----------VAGALQEEEYLAMLAEAG-FVDITIQP 230 (272)
T ss_pred cEEEEEEee-ccCCCC----------HHHHHhHH-HHh-cc-----------ccCCCCHHHHHHHHHHCC-CCceEEEe
Confidence 999997654 222111 11211111 110 11 112457899999999987 88776644
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.57 E-value=2.9e-07 Score=75.05 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=61.9
Q ss_pred ceEEeeecCCCCcccHHHHH--------------HHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQ--------------NIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH 128 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~--------------~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~ 128 (367)
.-+|+|+|||+|..++.+.+ ..++..+++...... .+ .++++..|+ ..+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~---~i~~~~~d~-~~~---------- 64 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL---SD---RITFVQGDA-EFD---------- 64 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT---TT---TEEEEESCC-HGG----------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CC---CeEEEECcc-ccC----------
Confidence 36899999999999999987 344444444321111 12 344555444 111
Q ss_pred cccceeeccCccccccCCCCCceeEEEecc-ccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHH
Q 017702 129 ARKYFAAGLPGSFHSRLFPRSSIHFVHTSY-ALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESF 207 (367)
Q Consensus 129 ~~~~f~~gvp~SFy~~l~P~~svd~~~S~~-alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~f 207 (367)
.-....+|++++.. ++|++-.. .+...+
T Consensus 65 ----------------~~~~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~ 93 (112)
T PF12847_consen 65 ----------------PDFLEPFDLVICSGFTLHFLLPL-----------------------------------DERRRV 93 (112)
T ss_dssp ----------------TTTSSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHH
T ss_pred ----------------cccCCCCCEEEECCCccccccch-----------------------------------hHHHHH
Confidence 11123499999999 77753311 366778
Q ss_pred HHHHHHhhccCceEEEEe
Q 017702 208 LNARAEELVPGGLMVLIL 225 (367)
Q Consensus 208 L~~Ra~EL~pGG~lvl~~ 225 (367)
|+...+-|+|||+|++..
T Consensus 94 l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 94 LERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEE
Confidence 999999999999999874
No 34
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.56 E-value=7e-07 Score=81.11 Aligned_cols=128 Identities=20% Similarity=0.296 Sum_probs=77.5
Q ss_pred CceEEeeecCCCCcccHHHHH------------HHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ------------NIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA 129 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~------------~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~ 129 (367)
++.+++|+|||.|.||+-+.+ ..++.+.+.-...+ ++|+...-|+. +
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~--------l~i~~~~~Dl~--~----------- 88 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG--------LDIRTRVADLN--D----------- 88 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---------TEEEEE-BGC--C-----------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC--------ceeEEEEecch--h-----------
Confidence 467999999999999999986 33444433222211 13455555552 1
Q ss_pred ccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHH
Q 017702 130 RKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLN 209 (367)
Q Consensus 130 ~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~ 209 (367)
.-++..+|+|+|..++|.|.. + .+..+++
T Consensus 89 ---------------~~~~~~yD~I~st~v~~fL~~--~----------------------------------~~~~i~~ 117 (192)
T PF03848_consen 89 ---------------FDFPEEYDFIVSTVVFMFLQR--E----------------------------------LRPQIIE 117 (192)
T ss_dssp ---------------BS-TTTEEEEEEESSGGGS-G--G----------------------------------GHHHHHH
T ss_pred ---------------ccccCCcCEEEEEEEeccCCH--H----------------------------------HHHHHHH
Confidence 112368999999999999772 1 3446888
Q ss_pred HHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCc
Q 017702 210 ARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGN 289 (367)
Q Consensus 210 ~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~ 289 (367)
...+.++|||+++++.+- ..+..+. ..+ |-+...++|++.....
T Consensus 118 ~m~~~~~pGG~~li~~~~-~~~d~p~-------------------------------~~~-~~f~~~~~EL~~~y~d--- 161 (192)
T PF03848_consen 118 NMKAATKPGGYNLIVTFM-ETPDYPC-------------------------------PSP-FPFLLKPGELREYYAD--- 161 (192)
T ss_dssp HHHHTEEEEEEEEEEEEB---SSS---------------------------------SS---S--B-TTHHHHHTTT---
T ss_pred HHHhhcCCcEEEEEEEec-ccCCCCC-------------------------------CCC-CCcccCHHHHHHHhCC---
Confidence 889999999999987664 2211110 012 2234578899988763
Q ss_pred eEEeEEEE
Q 017702 290 FTIEKMEK 297 (367)
Q Consensus 290 F~I~~lE~ 297 (367)
|+|.+.++
T Consensus 162 W~il~y~E 169 (192)
T PF03848_consen 162 WEILKYNE 169 (192)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEc
Confidence 99988765
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.55 E-value=4.1e-07 Score=79.01 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=73.0
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCcc---chHHHhhcCCccccceeeccC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDN---DFNTLFKSLPHARKYFAAGLP 138 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~N---DFn~lf~~l~~~~~~f~~gvp 138 (367)
+..+|+|+|||+|..+..+.+.. .| ..+++--|+... -.+..++.....+--|..+.-
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~----------------~~---~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~ 63 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL----------------NP---GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI 63 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS----------------TT---TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT
T ss_pred CCCEEEEecCcCcHHHHHHHHhc----------------CC---CCEEEEEECcHHHHHHhhcccccccccccceEEeeh
Confidence 45899999999999999887421 12 236788888642 233344444333344566553
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
.+ ..+.++ +.+|+++++.++||+. |...+|+.-.+-|++|
T Consensus 64 ~~-l~~~~~-~~~D~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 64 ED-LPQELE-EKFDIIISNGVLHHFP--------------------------------------DPEKVLKNIIRLLKPG 103 (152)
T ss_dssp TC-GCGCSS-TTEEEEEEESTGGGTS--------------------------------------HHHHHHHHHHHHEEEE
T ss_pred hc-cccccC-CCeeEEEEcCchhhcc--------------------------------------CHHHHHHHHHHHcCCC
Confidence 33 222244 8999999999999955 4456888889999999
Q ss_pred ceEEEEeec
Q 017702 219 GLMVLILAA 227 (367)
Q Consensus 219 G~lvl~~~g 227 (367)
|.+++....
T Consensus 104 G~~i~~~~~ 112 (152)
T PF13847_consen 104 GILIISDPN 112 (152)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEECC
Confidence 999988875
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.54 E-value=1e-06 Score=84.79 Aligned_cols=134 Identities=19% Similarity=0.308 Sum_probs=80.8
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHH---HhhcCCccccceeeccCcc
Q 017702 64 FKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNT---LFKSLPHARKYFAAGLPGS 140 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~---lf~~l~~~~~~f~~gvp~S 140 (367)
-+|+|+|||+|.|++.+.+. ..+|+--|....--.. ..+.... +--+..+ .
T Consensus 122 ~~vLDlGcG~G~~~~~la~~----------------------g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~---D 175 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL----------------------GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLY---D 175 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC----------------------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEe---c
Confidence 49999999999999887631 1245555554321111 1111000 0001111 1
Q ss_pred ccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCce
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGL 220 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 220 (367)
.- ..-+++++|+|+|+.++|+++. .++..+|+...+-|+|||+
T Consensus 176 ~~-~~~~~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 176 IN-SASIQEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred hh-cccccCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcE
Confidence 11 1123678999999999999752 2566799999999999999
Q ss_pred EEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCC-cccCCHHHHHHHHHhCCceEEeEEEE
Q 017702 221 MVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLP-TYNATPKELEAIIRTNGNFTIEKMEK 297 (367)
Q Consensus 221 lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P-~y~~s~eE~~~~l~~~g~F~I~~lE~ 297 (367)
+++.... ..+..+ ...| -+..+.+|+++.+.. |+|.+.++
T Consensus 219 ~l~v~~~-~~~~~~---------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~e 259 (287)
T PRK12335 219 NLIVCAM-DTEDYP---------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYNE 259 (287)
T ss_pred EEEEEec-ccccCC---------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEec
Confidence 7775543 221110 1123 346789999998864 99988754
No 37
>PRK06202 hypothetical protein; Provisional
Probab=98.53 E-value=2.8e-06 Score=78.99 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=88.3
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc-ccceeeccCc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA-RKYFAAGLPG 139 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~-~~~f~~gvp~ 139 (367)
.+..+|+|+|||+|.++..+.... ++. .+ ..+++-.|+..+- -...+..... +--+..+...
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~--------~~~-----g~---~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~~ 121 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA--------RRD-----GL---RLEVTAIDPDPRA-VAFARANPRRPGVTFRQAVSD 121 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH--------HhC-----CC---CcEEEEEcCCHHH-HHHHHhccccCCCeEEEEecc
Confidence 346799999999999888765332 111 12 3478888886533 2222222111 1112222211
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
.+ -++++++|+++|+.++||+.+. ++..+|+.-++-++ |
T Consensus 122 ~l---~~~~~~fD~V~~~~~lhh~~d~------------------------------------~~~~~l~~~~r~~~--~ 160 (232)
T PRK06202 122 EL---VAEGERFDVVTSNHFLHHLDDA------------------------------------EVVRLLADSAALAR--R 160 (232)
T ss_pred cc---cccCCCccEEEECCeeecCChH------------------------------------HHHHHHHHHHHhcC--e
Confidence 11 1267899999999999997531 23456766666555 5
Q ss_pred eEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 220 LMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMG-VLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 220 ~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG-~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
.+++.-+. ++.. .+... .........| .+.++. ...-.-+++.+|+.+++++ | |++.+...|
T Consensus 161 ~~~i~dl~-~~~~----------~~~~~-~~~~~~~~~~~~~~~d~---~~s~~~~~~~~el~~ll~~-G-f~~~~~~~~ 223 (232)
T PRK06202 161 LVLHNDLI-RSRL----------AYALF-WAGTRLLSRSSFVHTDG---LLSVRRSYTPAELAALAPQ-G-WRVERQWPF 223 (232)
T ss_pred eEEEeccc-cCHH----------HHHHH-HHHHHHhccCceeeccc---hHHHHhhcCHHHHHHHhhC-C-CeEEeccce
Confidence 55555555 3321 01110 1111111112 121111 1111237899999999998 5 999876554
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.52 E-value=1.3e-07 Score=75.92 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=49.3
Q ss_pred eeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHH---HhhcCCccccceeeccCccccc
Q 017702 67 ADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNT---LFKSLPHARKYFAAGLPGSFHS 143 (367)
Q Consensus 67 aD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~---lf~~l~~~~~~f~~gvp~SFy~ 143 (367)
+|+|||+|..+..++... | ..+++..|....-... -+....................
T Consensus 1 LdiGcG~G~~~~~l~~~~-----------------~---~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 60 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-----------------P---DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD 60 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---------------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---
T ss_pred CEeCccChHHHHHHHHhC-----------------C---CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh
Confidence 699999999999887443 2 4578888887533211 1111111111122222222111
Q ss_pred cCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceE
Q 017702 144 RLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 144 ~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
. .+++++|+|+++.++||+. |+..+|+.-++-|+|||+|
T Consensus 61 ~-~~~~~fD~V~~~~vl~~l~--------------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 61 Y-DPPESFDLVVASNVLHHLE--------------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp C-CC----SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred c-ccccccceehhhhhHhhhh--------------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 1 1227999999999999982 5567999999999999986
No 39
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.47 E-value=1.9e-05 Score=75.81 Aligned_cols=92 Identities=22% Similarity=0.313 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCc-ccCCHHHH
Q 017702 202 NDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPT-YNATPKEL 280 (367)
Q Consensus 202 ~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~-y~~s~eE~ 280 (367)
+++..|++...+-|+|||++++...+ ..+... . .+.-.+.+-+..+.+|- +.|+.+++
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~-~~~~~~----------~----------~~~~~~~~~i~kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTIT-HRDPPY----------H----------AERRSSSDFIRKYIFPGGYLPSLSEI 201 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEE-E--HHH----------H----------HCTTCCCHHHHHHTSTTS---BHHHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEecc-cccccc----------h----------hhcCCCceEEEEeeCCCCCCCCHHHH
Confidence 36778999999999999999999887 443210 0 00000001122233343 56899999
Q ss_pred HHHHHhCCceEEeEEEEEecCCCCCCHHHHHHhHHhhhhhhhh
Q 017702 281 EAIIRTNGNFTIEKMEKLSQPRRRITANEYASGIRAGIDGLIK 323 (367)
Q Consensus 281 ~~~l~~~g~F~I~~lE~~~~p~~~~~~~~v~~~iRa~~~~~l~ 323 (367)
...+++.| |+|...+.+ +..++..++.|...+.+
T Consensus 202 ~~~~~~~~-l~v~~~~~~--------~~hY~~Tl~~W~~~f~~ 235 (273)
T PF02353_consen 202 LRAAEDAG-LEVEDVENL--------GRHYARTLRAWRENFDA 235 (273)
T ss_dssp HHHHHHTT--EEEEEEE---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-EEEEEEEEc--------CcCHHHHHHHHHHHHHH
Confidence 99888876 999888766 24555556666555554
No 40
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.40 E-value=9.8e-06 Score=78.61 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=88.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhh-cCCcc-ccceeeccC
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFK-SLPHA-RKYFAAGLP 138 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~-~l~~~-~~~f~~gvp 138 (367)
.+..+|+|+|||+|..++.+.+.. | ..+++.-|+|. .-...+ .+... ..--+..++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~-----------------p---~~~~~~~D~~~--~~~~a~~~~~~~gl~~rv~~~~ 205 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF-----------------P---ELDSTILNLPG--AIDLVNENAAEKGVADRMRGIA 205 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC-----------------C---CCEEEEEecHH--HHHHHHHHHHhCCccceEEEEe
Confidence 345799999999998888776322 3 45677779862 111111 11110 000133456
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
++|++.-+|+ .|+++.+..+|-..+ .+-..+|+.-++.|+||
T Consensus 206 ~d~~~~~~~~--~D~v~~~~~lh~~~~------------------------------------~~~~~il~~~~~~L~pg 247 (306)
T TIGR02716 206 VDIYKESYPE--ADAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSG 247 (306)
T ss_pred cCccCCCCCC--CCEEEeEhhhhcCCh------------------------------------HHHHHHHHHHHHhcCCC
Confidence 6788655664 499988888883221 12235888899999999
Q ss_pred ceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeE
Q 017702 219 GLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEK 294 (367)
Q Consensus 219 G~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~ 294 (367)
|++++.=.. .++... ..+..+...+. .-|... .+..+++.+||.+++++.| |+..+
T Consensus 248 G~l~i~d~~-~~~~~~-------~~~~~~~~~~~---~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 248 GRLLILDMV-IDDPEN-------PNFDYLSHYIL---GAGMPF--------SVLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred CEEEEEEec-cCCCCC-------chhhHHHHHHH---Hccccc--------ccccCCCHHHHHHHHHHcC-CCeeE
Confidence 999887543 222110 11122222211 112110 1123566899999999997 87544
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=3.2e-05 Score=74.11 Aligned_cols=182 Identities=16% Similarity=0.206 Sum_probs=107.0
Q ss_pred CceEEeeecCCCCcccHHHHHHH-------------HHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNI-------------IEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH 128 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~i-------------i~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~ 128 (367)
+-.+|+|||||=|..++.+++.. .+..+++.+..+.+ . .++|.+-|.+ ||+.
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~--~----~v~v~l~d~r--d~~e------- 136 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE--D----NVEVRLQDYR--DFEE------- 136 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC--c----ccEEEecccc--cccc-------
Confidence 34899999999999999998754 22223333333221 1 3556666653 3222
Q ss_pred cccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHH
Q 017702 129 ARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFL 208 (367)
Q Consensus 129 ~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL 208 (367)
.+|=|+|.=.++-+.. +.+..|+
T Consensus 137 ---------------------~fDrIvSvgmfEhvg~------------------------------------~~~~~ff 159 (283)
T COG2230 137 ---------------------PFDRIVSVGMFEHVGK------------------------------------ENYDDFF 159 (283)
T ss_pred ---------------------ccceeeehhhHHHhCc------------------------------------ccHHHHH
Confidence 2777888666665442 3566799
Q ss_pred HHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCC
Q 017702 209 NARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNG 288 (367)
Q Consensus 209 ~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g 288 (367)
+.-.+-|+|||+|++-..+ .++.... . ...|. ...+..--+.|+..++....++.|
T Consensus 160 ~~~~~~L~~~G~~llh~I~-~~~~~~~---~--------~~~~i------------~~yiFPgG~lPs~~~i~~~~~~~~ 215 (283)
T COG2230 160 KKVYALLKPGGRMLLHSIT-GPDQEFR---R--------FPDFI------------DKYIFPGGELPSISEILELASEAG 215 (283)
T ss_pred HHHHhhcCCCceEEEEEec-CCCcccc---c--------chHHH------------HHhCCCCCcCCCHHHHHHHHHhcC
Confidence 9999999999999999998 5542110 0 00011 012233345789999999988886
Q ss_pred ceEEeEEEEEecCCCCCCHHHHHHhHHhhhhhhhhhccC---HHHHHHHHHHHHHHHHhhhhHH
Q 017702 289 NFTIEKMEKLSQPRRRITANEYASGIRAGIDGLIKKHFG---DEFVDEIFNYFTTKVEENYSII 349 (367)
Q Consensus 289 ~F~I~~lE~~~~p~~~~~~~~v~~~iRa~~~~~l~~~~~---~~~~de~f~ry~~~~~~~~~~~ 349 (367)
|.+...+.+.. .++..++.|.+.+-+ ++. ...-+.++..|+..++.--..+
T Consensus 216 -~~v~~~~~~~~--------hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~F 269 (283)
T COG2230 216 -FVVLDVESLRP--------HYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAAF 269 (283)
T ss_pred -cEEehHhhhcH--------HHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 98877665522 344444444444433 222 2233444555655555444433
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.38 E-value=7e-07 Score=81.67 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeE
Q 017702 29 TYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQ 108 (367)
Q Consensus 29 ~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~ 108 (367)
.+|+.+.....|.+-........ .+ .....+|+|+|||+|..|..+.+.. | ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~VLDiGcGtG~~~~~la~~~-----------------p---~~~ 66 (202)
T PRK00121 13 KGQQRAIEELWPRLSPAPLDWAE--LF----GNDAPIHLEIGFGKGEFLVEMAKAN-----------------P---DIN 66 (202)
T ss_pred cchhhhhcccchhhcCCCCCHHH--Hc----CCCCCeEEEEccCCCHHHHHHHHHC-----------------C---Ccc
Confidence 45667777777777433222121 12 2246799999999999999876322 1 225
Q ss_pred EEEcCCCccchHHHhhcC---CccccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccc
Q 017702 109 VFLNDHSDNDFNTLFKSL---PHARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQC 185 (367)
Q Consensus 109 v~~nDlp~NDFn~lf~~l---~~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~ 185 (367)
|+-.|....--...-+.+ ...+-.|..+.--..+.+.++++++|.++++++.+|...... . +
T Consensus 67 v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-~----------~---- 131 (202)
T PRK00121 67 FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-K----------R---- 131 (202)
T ss_pred EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCcccc-c----------c----
Confidence 666666543222222221 111222444432112334577899999999988888553210 0 0
Q ss_pred cCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCC
Q 017702 186 SESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVL 260 (367)
Q Consensus 186 ~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i 260 (367)
..+...||+.-++-|+|||.+++.... . +.+...+..|...|+-
T Consensus 132 ---------------~~~~~~~l~~i~~~LkpgG~l~i~~~~-~---------------~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 132 ---------------RLVQPEFLALYARKLKPGGEIHFATDW-E---------------GYAEYMLEVLSAEGGF 175 (202)
T ss_pred ---------------ccCCHHHHHHHHHHcCCCCEEEEEcCC-H---------------HHHHHHHHHHHhCccc
Confidence 002345888889999999999987754 1 3444556666666643
No 43
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.37 E-value=3.2e-06 Score=77.58 Aligned_cols=138 Identities=22% Similarity=0.222 Sum_probs=86.2
Q ss_pred chHHHhhHH---HHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCC
Q 017702 22 YSYANNSTY---QRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNL 98 (367)
Q Consensus 22 ~sY~~nS~~---Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~ 98 (367)
.-|.+||.+ |..+.+++++++. ++ .+++--|+|+|||||--+-.+-+
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLa--------lp------~~~~~~iLDIGCGsGLSg~vL~~---------------- 70 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELLA--------LP------GPKSGLILDIGCGSGLSGSVLSD---------------- 70 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHhh--------CC------CCCCcEEEEeccCCCcchheecc----------------
Confidence 368888876 6777776666653 22 44688999999999987665431
Q ss_pred CCCCCcceeEEEEcCCCccchHHHh-hcCCccccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCC
Q 017702 99 HQKPSALEFQVFLNDHSDNDFNTLF-KSLPHARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPA 177 (367)
Q Consensus 99 ~~~p~~~e~~v~~nDlp~NDFn~lf-~~l~~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~ 177 (367)
+ .-+++=-|..--.-..-. +.+. --+..++=| -+--|+++++|-++|-+|+|||-...+...+
T Consensus 71 ---~---Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~----- 134 (270)
T KOG1541|consen 71 ---S---GHQWIGVDISPSMLEQAVERELE---GDLILCDMG--EGLPFRPGTFDGVISISAVQWLCNADKSLHV----- 134 (270)
T ss_pred ---C---CceEEeecCCHHHHHHHHHhhhh---cCeeeeecC--CCCCCCCCccceEEEeeeeeeecccCccccC-----
Confidence 1 112333333211000000 0111 011111212 3456789999999999999998876543211
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeec
Q 017702 178 WNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 178 ~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
=++.+..|+..-..-|++|++.|+.+.-
T Consensus 135 ----------------------P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 135 ----------------------PKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ----------------------hHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 1356778999999999999999999964
No 44
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.35 E-value=1.1e-05 Score=77.14 Aligned_cols=76 Identities=24% Similarity=0.290 Sum_probs=43.7
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSF 141 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SF 141 (367)
...+|+|+|||+|..+..+.+.+ .. .. ..+++-.|+..+--...-+..+ +-.|..+. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~--------~~------~~---~~~v~giD~s~~~l~~A~~~~~--~~~~~~~d---~ 142 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL--------PE------IT---TMQLFGLDISKVAIKYAAKRYP--QVTFCVAS---S 142 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc--------cc------cc---CCeEEEECCCHHHHHHHHHhCC--CCeEEEee---c
Confidence 34789999999999988876432 10 00 1257788876433222111111 11233332 3
Q ss_pred cccCCCCCceeEEEeccc
Q 017702 142 HSRLFPRSSIHFVHTSYA 159 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~a 159 (367)
.+--++++++|+++|..+
T Consensus 143 ~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 143 HRLPFADQSLDAIIRIYA 160 (272)
T ss_pred ccCCCcCCceeEEEEecC
Confidence 333467899999998653
No 45
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.35 E-value=8.1e-06 Score=75.02 Aligned_cols=157 Identities=16% Similarity=0.202 Sum_probs=84.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC---ccccceeeccC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP---HARKYFAAGLP 138 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~---~~~~~f~~gvp 138 (367)
+..+|+|+|||+|..+..+.+. .+ .++..|+...-....-+.+. ..+-.|..+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-----------------~~-----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d- 101 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-----------------GA-----NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTS- 101 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-----------------CC-----eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC-
Confidence 4689999999999887765421 11 35566654322111111111 0011122222
Q ss_pred ccccccCC-CCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 139 GSFHSRLF-PRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 139 ~SFy~~l~-P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
+-+... +++++|+++++.++|+.. |...+|+...+-|+|
T Consensus 102 --~~~~~~~~~~~~D~i~~~~~l~~~~--------------------------------------~~~~~l~~~~~~L~~ 141 (224)
T TIGR01983 102 --VEDLAEKGAKSFDVVTCMEVLEHVP--------------------------------------DPQAFIRACAQLLKP 141 (224)
T ss_pred --HHHhhcCCCCCccEEEehhHHHhCC--------------------------------------CHHHHHHHHHHhcCC
Confidence 111122 247899999999988854 223578888889999
Q ss_pred CceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEE
Q 017702 218 GGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEK 297 (367)
Q Consensus 218 GG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~ 297 (367)
||.+++.... +.. .......+. .++. .+.... .......+.+.+++.+++++.| |+|..+..
T Consensus 142 gG~l~i~~~~-~~~--------~~~~~~~~~---~~~~-~~~~~~----~~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~ 203 (224)
T TIGR01983 142 GGILFFSTIN-RTP--------KSYLLAIVG---AEYI-LRIVPK----GTHDWEKFIKPSELTSWLESAG-LRVKDVKG 203 (224)
T ss_pred CcEEEEEecC-CCc--------hHHHHHHHh---hhhh-hhcCCC----CcCChhhcCCHHHHHHHHHHcC-Ceeeeeee
Confidence 9999877654 211 000101000 0111 011110 0001112568899999999886 99988775
Q ss_pred Ee
Q 017702 298 LS 299 (367)
Q Consensus 298 ~~ 299 (367)
+.
T Consensus 204 ~~ 205 (224)
T TIGR01983 204 LV 205 (224)
T ss_pred EE
Confidence 43
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.27 E-value=4.3e-06 Score=85.91 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=64.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc--cccceeeccCcc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH--ARKYFAAGLPGS 140 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~gvp~S 140 (367)
..+|+|+|||+|.+|..+.+.. . +|+-.|....-...- +.... .+-.|..+.-..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~---------------------~-~v~giD~s~~~l~~a-~~~~~~~~~i~~~~~d~~~ 94 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA---------------------G-QVIALDFIESVIKKN-ESINGHYKNVKFMCADVTS 94 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC---------------------C-EEEEEeCCHHHHHHH-HHHhccCCceEEEEecccc
Confidence 3589999999999999876321 1 345555433211110 11110 112233333211
Q ss_pred ccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCce
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGL 220 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 220 (367)
. ..-+|++++|+|+|..++||+++ .++..+|+..++-|+|||+
T Consensus 95 ~-~~~~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~ 137 (475)
T PLN02336 95 P-DLNISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGY 137 (475)
T ss_pred c-ccCCCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeE
Confidence 1 12357899999999999999753 1456799999999999999
Q ss_pred EEEEe
Q 017702 221 MVLIL 225 (367)
Q Consensus 221 lvl~~ 225 (367)
|++.=
T Consensus 138 l~~~d 142 (475)
T PLN02336 138 IFFRE 142 (475)
T ss_pred EEEEe
Confidence 97753
No 47
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.27 E-value=1.3e-05 Score=72.45 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=24.7
Q ss_pred cccCCHHHHHHHHHhCCceEEeEEEEEecC
Q 017702 272 TYNATPKELEAIIRTNGNFTIEKMEKLSQP 301 (367)
Q Consensus 272 ~y~~s~eE~~~~l~~~g~F~I~~lE~~~~p 301 (367)
..+++.+|+.+++++.| |++...+.+.+.
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~~~ 171 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFDVD 171 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEeccc
Confidence 45889999999999997 999998887543
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.27 E-value=4.7e-05 Score=70.08 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCCcccCCHHHHHHHHHhCCceEEeEEEEEe
Q 017702 269 NLPTYNATPKELEAIIRTNGNFTIEKMEKLS 299 (367)
Q Consensus 269 ~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~~ 299 (367)
..++++++++|+.+++++.| |++...+...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 35678899999999999997 9998876543
No 49
>PRK05785 hypothetical protein; Provisional
Probab=98.27 E-value=1.3e-05 Score=74.57 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=47.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFH 142 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy 142 (367)
..+|+|+|||+|.++..+.+.. ..+|+--|+..+--. ..+. +.-++ -+++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~---------------------~~~v~gvD~S~~Ml~-~a~~----~~~~~---~~d~~ 102 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF---------------------KYYVVALDYAENMLK-MNLV----ADDKV---VGSFE 102 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc---------------------CCEEEEECCCHHHHH-HHHh----ccceE---Eechh
Confidence 5799999999999987765221 014667776542211 1111 11122 23455
Q ss_pred ccCCCCCceeEEEeccccccccC
Q 017702 143 SRLFPRSSIHFVHTSYALHWLSK 165 (367)
Q Consensus 143 ~~l~P~~svd~~~S~~alhWLs~ 165 (367)
..-+|++|+|+++|++++||+.+
T Consensus 103 ~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 103 ALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred hCCCCCCCEEEEEecChhhccCC
Confidence 55678999999999999999654
No 50
>PRK06922 hypothetical protein; Provisional
Probab=98.26 E-value=2.1e-06 Score=90.33 Aligned_cols=116 Identities=23% Similarity=0.198 Sum_probs=71.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc--cccceeeccCcc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH--ARKYFAAGLPGS 140 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~gvp~S 140 (367)
..+|+|+|||+|..+..+.+.. | ..+++--|+..+--...=+.++. .+-.+..|....
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~-----------------P---~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~d 478 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET-----------------E---DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAIN 478 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-----------------C---CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHh
Confidence 5799999999998876654221 2 34678888875322222111111 111233333222
Q ss_pred ccccCCCCCceeEEEeccccccc-cCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWL-SKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWL-s~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
....+|++++|++++++++||+ +.+|..-. .|+ .+|...+|+.-.+-|||||
T Consensus 479 -Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKPGG 531 (677)
T PRK06922 479 -LSSSFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKPGG 531 (677)
T ss_pred -CccccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCCCc
Confidence 1223688999999999999974 44552110 111 1477789999999999999
Q ss_pred eEEEEe
Q 017702 220 LMVLIL 225 (367)
Q Consensus 220 ~lvl~~ 225 (367)
++++.-
T Consensus 532 rLII~D 537 (677)
T PRK06922 532 RIIIRD 537 (677)
T ss_pred EEEEEe
Confidence 999964
No 51
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.24 E-value=7.8e-06 Score=76.89 Aligned_cols=75 Identities=24% Similarity=0.355 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHH
Q 017702 203 DMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEA 282 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~ 282 (367)
|...||++..+-|+|||+|+++... |.-- + ..+.+ .+.+.+...|-.|.-..+ -|.+++|+..
T Consensus 173 dp~~~l~~l~~~lkP~G~lfittin-rt~l---S--~~~~i--~~~E~vl~ivp~Gth~~e---------kfi~p~e~~~ 235 (282)
T KOG1270|consen 173 DPQEFLNCLSALLKPNGRLFITTIN-RTIL---S--FAGTI--FLAEIVLRIVPKGTHTWE---------KFINPEELTS 235 (282)
T ss_pred CHHHHHHHHHHHhCCCCceEeeehh-hhHH---H--hhccc--cHHHHHHHhcCCCCcCHH---------HcCCHHHHHH
Confidence 6668999999999999999999986 4311 0 00000 112222224555543322 2688999999
Q ss_pred HHHhCCceEEeEE
Q 017702 283 IIRTNGNFTIEKM 295 (367)
Q Consensus 283 ~l~~~g~F~I~~l 295 (367)
+++.++ +.+..+
T Consensus 236 ~l~~~~-~~v~~v 247 (282)
T KOG1270|consen 236 ILNANG-AQVNDV 247 (282)
T ss_pred HHHhcC-cchhhh
Confidence 999885 766544
No 52
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.19 E-value=5.7e-05 Score=70.35 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=63.0
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcccc-
Q 017702 64 FKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFH- 142 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy- 142 (367)
-.+.|+|||+|..++.+... + + +|+-.|+.+ +..+.+.+..+.-..-+|-++-
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~------------------~---k-~VIatD~s~----~mL~~a~k~~~~~y~~t~~~ms~ 88 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH------------------Y---K-EVIATDVSE----AMLKVAKKHPPVTYCHTPSTMSS 88 (261)
T ss_pred ceEEEeccCCCcchHHHHHh------------------h---h-hheeecCCH----HHHHHhhcCCCcccccCCccccc
Confidence 48999999999666655422 2 3 466677764 2333322221222222333333
Q ss_pred ---ccCC-CCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 143 ---SRLF-PRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 143 ---~~l~-P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
..|. +++|||+|.+.-|+||+ |+.+|.+.-.+-|++.
T Consensus 89 ~~~v~L~g~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~~rvLRk~ 129 (261)
T KOG3010|consen 89 DEMVDLLGGEESVDLITAAQAVHWF---------------------------------------DLERFYKEAYRVLRKD 129 (261)
T ss_pred cccccccCCCcceeeehhhhhHHhh---------------------------------------chHHHHHHHHHHcCCC
Confidence 2233 68999999999999993 5677999999999997
Q ss_pred ceEEEEeec
Q 017702 219 GLMVLILAA 227 (367)
Q Consensus 219 G~lvl~~~g 227 (367)
|.+++...-
T Consensus 130 Gg~iavW~Y 138 (261)
T KOG3010|consen 130 GGLIAVWNY 138 (261)
T ss_pred CCEEEEEEc
Confidence 766666554
No 53
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.18 E-value=2.9e-05 Score=72.00 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=84.9
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC--ccccceeeccCc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP--HARKYFAAGLPG 139 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~--~~~~~f~~gvp~ 139 (367)
+..+|+|+|||+|..+..+.+. ..+++..|+..+.....-+... ....-+..+...
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~----------------------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 105 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL----------------------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAE 105 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc----------------------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHH
Confidence 3578999999999877655411 1135666665332211111110 001112222211
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
.+- ..+.+.+|+++++..+++..+ ...+|+...+-|+|||
T Consensus 106 ~~~--~~~~~~fD~Ii~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG 145 (233)
T PRK05134 106 ELA--AEHPGQFDVVTCMEMLEHVPD--------------------------------------PASFVRACAKLVKPGG 145 (233)
T ss_pred Hhh--hhcCCCccEEEEhhHhhccCC--------------------------------------HHHHHHHHHHHcCCCc
Confidence 111 125578999999988887432 2347888888999999
Q ss_pred eEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 220 LMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 220 ~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
+|++...+ +... ...+.... .+....+.- . .......+.+.+++.+++++.| |++......
T Consensus 146 ~l~v~~~~-~~~~--------~~~~~~~~---~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~~ 206 (233)
T PRK05134 146 LVFFSTLN-RNLK--------SYLLAIVG---AEYVLRMLP-K----GTHDYKKFIKPSELAAWLRQAG-LEVQDITGL 206 (233)
T ss_pred EEEEEecC-CChH--------HHHHHHhh---HHHHhhhcC-c----ccCchhhcCCHHHHHHHHHHCC-CeEeeeeeE
Confidence 99988765 3210 00111110 011111110 0 0011123678999999999997 998877543
No 54
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.17 E-value=4.3e-05 Score=71.43 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=70.7
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGS 140 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~S 140 (367)
++..+|+|+|+|+|..+..++.. .| .++++.-|||.. ...... .--+.-+||+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~-----------------~P---~l~~~v~Dlp~v-----~~~~~~--~~rv~~~~gd 151 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARA-----------------YP---NLRATVFDLPEV-----IEQAKE--ADRVEFVPGD 151 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHH-----------------ST---TSEEEEEE-HHH-----HCCHHH--TTTEEEEES-
T ss_pred cCccEEEeccCcchHHHHHHHHH-----------------CC---CCcceeeccHhh-----hhcccc--cccccccccc
Confidence 45578999999999998877622 35 678899999941 111111 1123337788
Q ss_pred ccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC--
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG-- 218 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG-- 218 (367)
|+ .-+|. .|+++-...||=.+ .+|-..+|+.-++.|+||
T Consensus 152 ~f-~~~P~--~D~~~l~~vLh~~~------------------------------------d~~~~~iL~~~~~al~pg~~ 192 (241)
T PF00891_consen 152 FF-DPLPV--ADVYLLRHVLHDWS------------------------------------DEDCVKILRNAAAALKPGKD 192 (241)
T ss_dssp TT-TCCSS--ESEEEEESSGGGS-------------------------------------HHHHHHHHHHHHHHSEECTT
T ss_pred HH-hhhcc--ccceeeehhhhhcc------------------------------------hHHHHHHHHHHHHHhCCCCC
Confidence 99 67776 99999999998322 135557999999999999
Q ss_pred ceEEEEeecccCC
Q 017702 219 GLMVLILAAVVPD 231 (367)
Q Consensus 219 G~lvl~~~g~~~n 231 (367)
|++++.=.- .++
T Consensus 193 g~llI~e~~-~~~ 204 (241)
T PF00891_consen 193 GRLLIIEMV-LPD 204 (241)
T ss_dssp EEEEEEEEE-ECS
T ss_pred CeEEEEeec-cCC
Confidence 998887665 443
No 55
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.15 E-value=1.3e-05 Score=72.69 Aligned_cols=95 Identities=20% Similarity=0.347 Sum_probs=67.9
Q ss_pred CCCceEEeeecCCCCcccHHHHH------------HHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC
Q 017702 60 TLKPFKIADLGCSVGPNTLLAVQ------------NIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP 127 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~~------------~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~ 127 (367)
.+..-+++|+|||.|.+|..+.. ..|+.-++++.. .| .+++..-|+|.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~------~~---~V~~~~~dvp~----------- 100 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG------LP---HVEWIQADVPE----------- 100 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-------S---SEEEEES-TTT-----------
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC------CC---CeEEEECcCCC-----------
Confidence 45678999999999999999875 444444555442 34 56777777763
Q ss_pred ccccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHH
Q 017702 128 HARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESF 207 (367)
Q Consensus 128 ~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~f 207 (367)
..|++++|+|+.+-.+++|+.. .|+..+
T Consensus 101 -----------------~~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~~~ 128 (201)
T PF05401_consen 101 -----------------FWPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLRAA 128 (201)
T ss_dssp --------------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHHHH
T ss_pred -----------------CCCCCCeeEEEEehHhHcCCCH-----------------------------------HHHHHH
Confidence 2478999999999999998742 278889
Q ss_pred HHHHHHhhccCceEEEEee
Q 017702 208 LNARAEELVPGGLMVLILA 226 (367)
Q Consensus 208 L~~Ra~EL~pGG~lvl~~~ 226 (367)
+..-.+-|+|||.||+...
T Consensus 129 l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 129 LDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEe
Confidence 9999999999999999775
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.13 E-value=1.1e-05 Score=72.68 Aligned_cols=128 Identities=14% Similarity=0.158 Sum_probs=72.3
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchH---HHhhcCCccccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFN---TLFKSLPHARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn---~lf~~l~~~~~~f~~gvp~ 139 (367)
..+|+|+|||+|..|+.+.. . .| ..+|+.-|...+--. ...+.....+--+..+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~-~----------------~~---~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d-- 100 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI-A----------------RP---ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR-- 100 (181)
T ss_pred CCeEEEecCCCCccHHHHHH-H----------------CC---CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc--
Confidence 47999999999999998752 1 12 235777777643211 11111111122234443
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
. +.+.+.+++|+++|.. +|+ +..+++.-.+-|+|||
T Consensus 101 -~-~~~~~~~~fD~I~s~~-~~~-----------------------------------------~~~~~~~~~~~LkpgG 136 (181)
T TIGR00138 101 -A-EDFQHEEQFDVITSRA-LAS-----------------------------------------LNVLLELTLNLLKVGG 136 (181)
T ss_pred -h-hhccccCCccEEEehh-hhC-----------------------------------------HHHHHHHHHHhcCCCC
Confidence 2 2234568999999864 332 1235555567799999
Q ss_pred eEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCC
Q 017702 220 LMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLP 271 (367)
Q Consensus 220 ~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P 271 (367)
++++.... .. ...+....+.+..+|+- .-+.+++..|
T Consensus 137 ~lvi~~~~--~~------------~~~~~~~~e~~~~~~~~-~~~~~~~~~~ 173 (181)
T TIGR00138 137 YFLAYKGK--KY------------LDEIEEAKRKCQVLGVE-PLEVPPLTGP 173 (181)
T ss_pred EEEEEcCC--Cc------------HHHHHHHHHhhhhcCce-EeeccccCCC
Confidence 99987532 11 13344444566666743 4455666666
No 57
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.12 E-value=8.1e-05 Score=68.83 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHH
Q 017702 203 DMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEA 282 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~ 282 (367)
+...+++.-.+-|+|||++++.++. .+... ..-|.|.-+++|+++
T Consensus 130 ~R~~~~~~l~~lLkpgG~~ll~~~~-~~~~~----------------------------------~~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 130 MRQRYAAHLLALLPPGARQLLITLD-YDQSE----------------------------------MAGPPFSVSPAEVEA 174 (213)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEE-cCCCC----------------------------------CCCcCCCCCHHHHHH
Confidence 4456788889999999998888776 43210 012557789999999
Q ss_pred HHHhCCceEEeEEEEEecC
Q 017702 283 IIRTNGNFTIEKMEKLSQP 301 (367)
Q Consensus 283 ~l~~~g~F~I~~lE~~~~p 301 (367)
.+.. .|+|+.++....+
T Consensus 175 ~f~~--~~~i~~~~~~~~~ 191 (213)
T TIGR03840 175 LYGG--HYEIELLESRDVL 191 (213)
T ss_pred HhcC--CceEEEEeecccc
Confidence 9864 3999998877655
No 58
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.10 E-value=2.1e-05 Score=75.77 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=96.2
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC----ccccceeecc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP----HARKYFAAGL 137 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~----~~~~~f~~gv 137 (367)
+--+|+|+||+.|.-+..+.. . .| . .|+--| |+-.|..-|..+. ....+|...+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~------------~-----GA---~-~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~lpl 172 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLG------------R-----GA---K-SVIGID-PSPLFYLQFEAIKHFLGQDPPVFELPL 172 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhh------------c-----CC---C-EEEEEC-CChHHHHHHHHHHHHhCCCccEEEcCc
Confidence 347999999999999987761 1 12 2 344444 4444555554432 2333343322
Q ss_pred CccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 138 PGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
..+.|-..+++|++||.-.|=-+.+ | -..|..-.+-|+|
T Consensus 173 ---gvE~Lp~~~~FDtVF~MGVLYHrr~-P-------------------------------------l~~L~~Lk~~L~~ 211 (315)
T PF08003_consen 173 ---GVEDLPNLGAFDTVFSMGVLYHRRS-P-------------------------------------LDHLKQLKDSLRP 211 (315)
T ss_pred ---chhhccccCCcCEEEEeeehhccCC-H-------------------------------------HHHHHHHHHhhCC
Confidence 2345555789999999665544332 1 1357777789999
Q ss_pred CceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEE
Q 017702 218 GGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKME 296 (367)
Q Consensus 218 GG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE 296 (367)
||.||+.+....++.. .-+++++.+..|..=|+.||..-+..+++..| |+-.++-
T Consensus 212 gGeLvLETlvi~g~~~-----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~v 266 (315)
T PF08003_consen 212 GGELVLETLVIDGDEN-----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRCV 266 (315)
T ss_pred CCEEEEEEeeecCCCc-----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEEe
Confidence 9999999997333321 22455566778888888999999999999997 8655443
No 59
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.09 E-value=0.00013 Score=67.11 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=24.5
Q ss_pred CCcccCCHHHHHHHHHhCCceEEeEEEEEec
Q 017702 270 LPTYNATPKELEAIIRTNGNFTIEKMEKLSQ 300 (367)
Q Consensus 270 ~P~y~~s~eE~~~~l~~~g~F~I~~lE~~~~ 300 (367)
.+.++.+.+++.++++..| |++.+.+.+..
T Consensus 188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 217 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAG-FKVVRTERISS 217 (230)
T ss_pred CCccccCHHHHHHHHHHCC-CceEeeeeccc
Confidence 4567789999999999997 99988876643
No 60
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.08 E-value=2e-05 Score=73.25 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=111.2
Q ss_pred HHHhhHHHHHHHHH--------HHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhc
Q 017702 24 YANNSTYQRGVVDA--------AKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRT 95 (367)
Q Consensus 24 Y~~nS~~Q~~~~~~--------~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~ 95 (367)
|..++..+-..... -..|+.....+..+.+ .....+|+++|||-|..+..+++..
T Consensus 31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~------~~~~~~ilEvGCGvGNtvfPll~~~----------- 93 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD------EKSAETILEVGCGVGNTVFPLLKTS----------- 93 (264)
T ss_pred hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc------ccChhhheeeccCCCcccchhhhcC-----------
Confidence 55555554444332 2455655555533322 2223499999999998888776222
Q ss_pred cCCCCCCCcceeEEEEcCCCccchHHHhhcCCc--ccc--ceeeccCccccccCCCCCceeEEEeccccccccCCCcccc
Q 017702 96 TNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH--ARK--YFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIV 171 (367)
Q Consensus 96 ~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~--~~~--~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~ 171 (367)
..| .+.+|..|-..+--+- .+.-.. ... .|+.-.-++=...-++++|+|++..-++ ||-+|+.
T Consensus 94 ----~n~---~l~v~acDfsp~Ai~~-vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pe-- 160 (264)
T KOG2361|consen 94 ----PNN---RLKVYACDFSPRAIEL-VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPE-- 160 (264)
T ss_pred ----CCC---CeEEEEcCCChHHHHH-HHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE---EeccChH--
Confidence 134 4788987776543222 222111 111 1332222222455567789998877554 3555542
Q ss_pred CCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHH
Q 017702 172 DPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCF 251 (367)
Q Consensus 172 ~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al 251 (367)
-|.+-+....+-|||||.|++-=.| +.+.. . +
T Consensus 161 -------------------------------k~~~a~~nl~~llKPGG~llfrDYg-~~Dla------------q----l 192 (264)
T KOG2361|consen 161 -------------------------------KMQSVIKNLRTLLKPGGSLLFRDYG-RYDLA------------Q----L 192 (264)
T ss_pred -------------------------------HHHHHHHHHHHHhCCCcEEEEeecc-cchHH------------H----H
Confidence 2334566777788999999999888 65521 0 1
Q ss_pred HHHHHcCCCCHhhh-hccCCCcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 252 NDLAKMGVLSEEKV-DSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 252 ~~m~~eG~i~~~~~-d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
+-+ ..-.|+.... ..=..+.||.+.+|+++++.++| |..++++.-
T Consensus 193 RF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 193 RFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred hcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 111 1222322111 12246889999999999999997 887776653
No 61
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.08 E-value=1.5e-05 Score=77.46 Aligned_cols=110 Identities=16% Similarity=0.217 Sum_probs=69.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc-cccceeeccCccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH-ARKYFAAGLPGSF 141 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~-~~~~f~~gvp~SF 141 (367)
..+|+|+|||+|..|..+++... . ..+++--|+...--....+.+.. .+..=+.++-|+|
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~---------------~----~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~ 124 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR---------------Q----PARYVPIDISADALKESAAALAADYPQLEVHGICADF 124 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc---------------c----CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcc
Confidence 46899999999999998886541 0 13577777764322222222221 1111123344455
Q ss_pred cccC-CCCC----ceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 142 HSRL-FPRS----SIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 142 y~~l-~P~~----svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
.+.+ +|.. ...++++.+++++++ | .|...||+.-++-|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~----------------------------------~e~~~~L~~i~~~L~ 168 (301)
T TIGR03438 125 TQPLALPPEPAAGRRLGFFPGSTIGNFT--P----------------------------------EEAVAFLRRIRQLLG 168 (301)
T ss_pred cchhhhhcccccCCeEEEEecccccCCC--H----------------------------------HHHHHHHHHHHHhcC
Confidence 5432 2322 456777778899875 2 255679999999999
Q ss_pred cCceEEEEeec
Q 017702 217 PGGLMVLILAA 227 (367)
Q Consensus 217 pGG~lvl~~~g 227 (367)
|||+|++.+-.
T Consensus 169 pgG~~lig~d~ 179 (301)
T TIGR03438 169 PGGGLLIGVDL 179 (301)
T ss_pred CCCEEEEeccC
Confidence 99999987765
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.07 E-value=2.4e-05 Score=74.63 Aligned_cols=43 Identities=28% Similarity=0.474 Sum_probs=34.9
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEE
Q 017702 146 FPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLI 224 (367)
Q Consensus 146 ~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 224 (367)
+|.+++|+|+|.++|||++. | +...+|+.-++-|+|||+|++.
T Consensus 199 ~~~~~fD~I~crnvl~yf~~-~-----------------------------------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFDE-P-----------------------------------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CccCCCCEEEechhHHhCCH-H-----------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 45789999999999999753 1 3446888888999999998864
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.07 E-value=3.1e-05 Score=71.28 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=65.8
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFH 142 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy 142 (367)
..+|+|+|||+|..|..+++.. .+ .-+|+--|+-. .+ .++ .-.+..| ++.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~----------------~~---~~~V~aVDi~~--~~----~~~--~v~~i~~---D~~ 101 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI----------------GD---KGRVIACDILP--MD----PIV--GVDFLQG---DFR 101 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc----------------CC---CceEEEEeccc--cc----CCC--CcEEEec---CCC
Confidence 4689999999999888776432 11 12466666632 11 111 1223333 333
Q ss_pred cc--------CCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHh
Q 017702 143 SR--------LFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEE 214 (367)
Q Consensus 143 ~~--------l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 214 (367)
.. -++++++|+++|+.+.||... |. .| ... + .......|+.-.+-
T Consensus 102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~~~----~-~~~~~~~L~~~~~~ 154 (209)
T PRK11188 102 DELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------IPR----A-MYLVELALDMCRDV 154 (209)
T ss_pred ChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------HHH----H-HHHHHHHHHHHHHH
Confidence 32 256789999999999999431 11 00 000 0 11134688888899
Q ss_pred hccCceEEEEeec
Q 017702 215 LVPGGLMVLILAA 227 (367)
Q Consensus 215 L~pGG~lvl~~~g 227 (367)
|+|||.|++..+.
T Consensus 155 LkpGG~~vi~~~~ 167 (209)
T PRK11188 155 LAPGGSFVVKVFQ 167 (209)
T ss_pred cCCCCEEEEEEec
Confidence 9999999997775
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.04 E-value=5.1e-05 Score=67.69 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=64.9
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFH 142 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy 142 (367)
..+|+|+|||+|..++.+... . . +++-.|+-..--...=+++... ..-+.-+.++++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~-----------------~----~-~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~ 76 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK-----------------G----K-CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLF 76 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc-----------------C----C-EEEEEECCHHHHHHHHHHHHHc-CCceEEEEcccc
Confidence 368999999999988876521 1 2 4666676432211111111100 000111223344
Q ss_pred ccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEE
Q 017702 143 SRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMV 222 (367)
Q Consensus 143 ~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 222 (367)
+. +.+++|+++|+..+|.....+.. .+....++..| . .-...+..||+.-.+-|+|||+++
T Consensus 77 ~~--~~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~------~----------~~~~~~~~~l~~~~~~Lk~gG~~~ 137 (179)
T TIGR00537 77 KG--VRGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG------K----------DGRKVIDRFLDELPEILKEGGRVQ 137 (179)
T ss_pred cc--cCCcccEEEECCCCCCCcchhcc-cchhhhhhhcC------C----------chHHHHHHHHHhHHHhhCCCCEEE
Confidence 42 24589999999888765432210 00000011000 0 001224568888889999999999
Q ss_pred EEeec
Q 017702 223 LILAA 227 (367)
Q Consensus 223 l~~~g 227 (367)
+...+
T Consensus 138 ~~~~~ 142 (179)
T TIGR00537 138 LIQSS 142 (179)
T ss_pred EEEec
Confidence 88765
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.01 E-value=4.3e-05 Score=69.37 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=66.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc---cccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH---ARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~---~~~~f~~gvp~ 139 (367)
.-+|+|+|||+|..+..+.... | +.+++--|....-....-+.+.. .+-.|+.+.--
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-----------------p---~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~ 76 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-----------------P---DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDAN 76 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-----------------C---CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHH
Confidence 4599999999999998776321 2 23455555533211111111111 11123333322
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
.+...++|++++|.+++++..+|..+.. . |.++ ....||+.-++-|+|||
T Consensus 77 ~~~~~~~~~~~~d~v~~~~pdpw~k~~h-~----------~~r~-------------------~~~~~l~~~~r~LkpgG 126 (194)
T TIGR00091 77 ELLDKFFPDGSLSKVFLNFPDPWPKKRH-N----------KRRI-------------------TQPHFLKEYANVLKKGG 126 (194)
T ss_pred HHHHhhCCCCceeEEEEECCCcCCCCCc-c----------cccc-------------------CCHHHHHHHHHHhCCCC
Confidence 2224456778999999999999944311 0 0000 01358888999999999
Q ss_pred eEEEEeec
Q 017702 220 LMVLILAA 227 (367)
Q Consensus 220 ~lvl~~~g 227 (367)
.+++.+-.
T Consensus 127 ~l~~~td~ 134 (194)
T TIGR00091 127 VIHFKTDN 134 (194)
T ss_pred EEEEEeCC
Confidence 99887744
No 66
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.98 E-value=5.3e-05 Score=69.53 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=59.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCC
Q 017702 24 YANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPS 103 (367)
Q Consensus 24 Y~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~ 103 (367)
|.+....+... .....++.+.+.. .++..+|+|+|||+|.++..+.+.. |
T Consensus 17 ~~~rn~~~~~~-~~~~~~~~~~l~~-----------~~~~~~VLDiGCG~G~~~~~L~~~~-----------------~- 66 (204)
T TIGR03587 17 YIDRNSRQSLV-AAKLAMFARALNR-----------LPKIASILELGANIGMNLAALKRLL-----------------P- 66 (204)
T ss_pred hhhccccHHHH-HHHHHHHHHHHHh-----------cCCCCcEEEEecCCCHHHHHHHHhC-----------------C-
Confidence 55444433332 3344555555543 2345689999999999888775221 1
Q ss_pred cceeEEEEcCCCccchHHHhhcCCccccceeeccCccccccCCCCCceeEEEecccccccc
Q 017702 104 ALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLS 164 (367)
Q Consensus 104 ~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs 164 (367)
..+++--|+..+-....-+.++. ..+.. ++..+ .+|++++|+++|+.+||+++
T Consensus 67 --~~~v~giDiS~~~l~~A~~~~~~--~~~~~---~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 67 --FKHIYGVEINEYAVEKAKAYLPN--INIIQ---GSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred --CCeEEEEECCHHHHHHHHhhCCC--CcEEE---eeccC-CCCCCCEEEEEECChhhhCC
Confidence 23566667754332222111221 11222 33444 67889999999999998764
No 67
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.97 E-value=7.3e-05 Score=70.44 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHH--------------HHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcC
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNI--------------IEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSL 126 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~i--------------i~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l 126 (367)
+..-+|+|+|||.|..++.+.+.. .+..++....+ +. .. .|+|+.-|+ +..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-~l--~~---ri~v~~~Di-----~~~---- 107 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-PL--EE---RIQVIEADI-----KEF---- 107 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-cc--hh---ceeEehhhH-----HHh----
Confidence 447999999999999999998752 12222221111 10 11 345555444 222
Q ss_pred CccccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHH
Q 017702 127 PHARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMES 206 (367)
Q Consensus 127 ~~~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~ 206 (367)
..-.+.+++|+|+| -|+ .|..| .. ....+..+..+-+..-++..
T Consensus 108 ----------------~~~~~~~~fD~Ii~---------NPP--------yf~~~-~~--~~~~~~~~~Ar~e~~~~le~ 151 (248)
T COG4123 108 ----------------LKALVFASFDLIIC---------NPP--------YFKQG-SR--LNENPLRAIARHEITLDLED 151 (248)
T ss_pred ----------------hhcccccccCEEEe---------CCC--------CCCCc-cc--cCcChhhhhhhhhhcCCHHH
Confidence 22233348999999 454 22222 22 23344566677778889999
Q ss_pred HHHHHHHhhccCceEEEEeec
Q 017702 207 FLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 207 fL~~Ra~EL~pGG~lvl~~~g 227 (367)
+++.-++-|||||.+.++-..
T Consensus 152 ~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 152 LIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred HHHHHHHHccCCCEEEEEecH
Confidence 999999999999999888754
No 68
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.92 E-value=7.6e-05 Score=67.06 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=17.4
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~ 81 (367)
...+|+|+|||+|..++.+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH
Confidence 34689999999999999886
No 69
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.91 E-value=0.00029 Score=65.40 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHH
Q 017702 203 DMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEA 282 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~ 282 (367)
+...+++.-++-|+|||++++.+.. .+... ..-|.|..+.+|+++
T Consensus 133 ~R~~~~~~l~~lL~pgG~~~l~~~~-~~~~~----------------------------------~~gPp~~~~~~el~~ 177 (218)
T PRK13255 133 MRERYVQQLAALLPAGCRGLLVTLD-YPQEE----------------------------------LAGPPFSVSDEEVEA 177 (218)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEE-eCCcc----------------------------------CCCCCCCCCHHHHHH
Confidence 3446788888999999986665554 32210 012556889999999
Q ss_pred HHHhCCceEEeEEEEEecC
Q 017702 283 IIRTNGNFTIEKMEKLSQP 301 (367)
Q Consensus 283 ~l~~~g~F~I~~lE~~~~p 301 (367)
++.. .|+|+.++....+
T Consensus 178 ~~~~--~~~i~~~~~~~~~ 194 (218)
T PRK13255 178 LYAG--CFEIELLERQDVL 194 (218)
T ss_pred HhcC--CceEEEeeecccc
Confidence 9853 4999988876554
No 70
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.90 E-value=2.5e-05 Score=62.91 Aligned_cols=98 Identities=28% Similarity=0.341 Sum_probs=60.0
Q ss_pred EeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC--ccccceeeccCccccc
Q 017702 66 IADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP--HARKYFAAGLPGSFHS 143 (367)
Q Consensus 66 IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~--~~~~~f~~gvp~SFy~ 143 (367)
|+|+|||+|.++..+.... +. .| +.+++.-|+..+-....-+... ..+--|..+....
T Consensus 1 ILDlgcG~G~~~~~l~~~~---------~~-----~~---~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~--- 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF---------DA-----GP---SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD--- 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS----------------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC---
T ss_pred CEEeecCCcHHHHHHHHHh---------hh-----cc---cceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH---
Confidence 7999999999999887442 11 12 3468888887543322222221 1123355555322
Q ss_pred cCCCCCceeEEEeccc-cccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 144 RLFPRSSIHFVHTSYA-LHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 144 ~l~P~~svd~~~S~~a-lhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
--++.+++|+++++.+ +|++++ +++..+|+.-++-|+|||
T Consensus 61 l~~~~~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 61 LPFSDGKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHHHSSSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred CcccCCCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHhCCCC
Confidence 1236779999999666 998662 367789999999999998
No 71
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.87 E-value=5.2e-05 Score=67.37 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=64.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc--cccceeeccCc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH--ARKYFAAGLPG 139 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~gvp~ 139 (367)
..-+|+|+|||+|..++.+... .| ...|+..|.-.+-....-+++.. ... +..+..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~-----------------~~---~~~v~~vDi~~~a~~~a~~n~~~n~~~~--v~~~~~ 88 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKR-----------------GP---DAKVTAVDINPDALELAKRNAERNGLEN--VEVVQS 88 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHT-----------------ST---CEEEEEEESBHHHHHHHHHHHHHTTCTT--EEEEES
T ss_pred cCCeEEEecCChHHHHHHHHHh-----------------CC---CCEEEEEcCCHHHHHHHHHHHHhcCccc--cccccc
Confidence 3468999999999999988631 23 44677777764333333222211 111 222333
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
+.++.+. ++++|+|+|+=-+|+-.. .-..-+..|++.-.+-|+|||
T Consensus 89 d~~~~~~-~~~fD~Iv~NPP~~~~~~---------------------------------~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 89 DLFEALP-DGKFDLIVSNPPFHAGGD---------------------------------DGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp STTTTCC-TTCEEEEEE---SBTTSH---------------------------------CHHHHHHHHHHHHHHHEEEEE
T ss_pred ccccccc-ccceeEEEEccchhcccc---------------------------------cchhhHHHHHHHHHHhccCCC
Confidence 4555444 789999999543333110 011234568888889999999
Q ss_pred eEEEEee
Q 017702 220 LMVLILA 226 (367)
Q Consensus 220 ~lvl~~~ 226 (367)
.|++...
T Consensus 135 ~l~lv~~ 141 (170)
T PF05175_consen 135 RLFLVIN 141 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 9988664
No 72
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.87 E-value=0.00021 Score=65.42 Aligned_cols=149 Identities=18% Similarity=0.228 Sum_probs=95.7
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc-----c-ccc------
Q 017702 65 KIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH-----A-RKY------ 132 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~-----~-~~~------ 132 (367)
+|+|+|||||--...+.+.+ | .+++.=+|...+-+.++-.-+.. - .+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-----------------P---~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-----------------P---HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-----------------C---CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 79999999998888776433 4 56777888887776665443211 0 011
Q ss_pred --eeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHH
Q 017702 133 --FAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNA 210 (367)
Q Consensus 133 --f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~ 210 (367)
...+.+. .++..++|.++|.+.+|-.+- + .-..+++.
T Consensus 88 ~~w~~~~~~-----~~~~~~~D~i~~~N~lHI~p~-------------------------~-----------~~~~lf~~ 126 (204)
T PF06080_consen 88 PPWPWELPA-----PLSPESFDAIFCINMLHISPW-------------------------S-----------AVEGLFAG 126 (204)
T ss_pred CCCcccccc-----ccCCCCcceeeehhHHHhcCH-------------------------H-----------HHHHHHHH
Confidence 1111111 125689999999999998441 1 22347888
Q ss_pred HHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCce
Q 017702 211 RAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNF 290 (367)
Q Consensus 211 Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F 290 (367)
-++-|++||.|++-.+= ..++...++. . ..+...|++ -+.-|-.|+.+++.++-.++| +
T Consensus 127 a~~~L~~gG~L~~YGPF-~~~G~~ts~S-N----~~FD~sLr~--------------rdp~~GiRD~e~v~~lA~~~G-L 185 (204)
T PF06080_consen 127 AARLLKPGGLLFLYGPF-NRDGKFTSES-N----AAFDASLRS--------------RDPEWGIRDIEDVEALAAAHG-L 185 (204)
T ss_pred HHHhCCCCCEEEEeCCc-ccCCEeCCcH-H----HHHHHHHhc--------------CCCCcCccCHHHHHHHHHHCC-C
Confidence 89999999999888774 4455433321 1 333444442 234477899999999988887 7
Q ss_pred EEeEE
Q 017702 291 TIEKM 295 (367)
Q Consensus 291 ~I~~l 295 (367)
+++..
T Consensus 186 ~l~~~ 190 (204)
T PF06080_consen 186 ELEED 190 (204)
T ss_pred ccCcc
Confidence 66544
No 73
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.87 E-value=8.2e-05 Score=69.84 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=98.0
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcC---C--c-ccccee
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSL---P--H-ARKYFA 134 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l---~--~-~~~~f~ 134 (367)
.+..+++|.+||||..|+.+++.+-+ +.++ . +=+|+..|.-.+.-+-=-+.- + . ....|+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s----~~~~------~----~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~ 164 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKS----QFGD------R----ESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWV 164 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhcc----ccCC------C----CceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEE
Confidence 44699999999999999999865521 1111 1 236777777543322111110 0 0 112344
Q ss_pred eccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHh
Q 017702 135 AGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEE 214 (367)
Q Consensus 135 ~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 214 (367)
.|. -..--||++++|...+++.+--..+++ +-|+.-++-
T Consensus 165 ~~d---AE~LpFdd~s~D~yTiafGIRN~th~~--------------------------------------k~l~EAYRV 203 (296)
T KOG1540|consen 165 EGD---AEDLPFDDDSFDAYTIAFGIRNVTHIQ--------------------------------------KALREAYRV 203 (296)
T ss_pred eCC---cccCCCCCCcceeEEEecceecCCCHH--------------------------------------HHHHHHHHh
Confidence 444 344557999999999988887544333 234444477
Q ss_pred hccCceEEEEeecccCCCCCCCCCchhhHHH---HHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceE
Q 017702 215 LVPGGLMVLILAAVVPDGIPLSNSYVGVFNN---ILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFT 291 (367)
Q Consensus 215 L~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~---~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~ 291 (367)
|||||+|.+.-+. .-+..+.........++ .+.+.+....+.+..=-+-+. -||+.||+..++++.| |.
T Consensus 204 LKpGGrf~cLeFs-kv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F~ 275 (296)
T KOG1540|consen 204 LKPGGRFSCLEFS-KVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-FS 275 (296)
T ss_pred cCCCcEEEEEEcc-ccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-Cc
Confidence 9999999999888 54422111000111112 223333332222221111111 2689999999999997 87
Q ss_pred EeE-EEE
Q 017702 292 IEK-MEK 297 (367)
Q Consensus 292 I~~-lE~ 297 (367)
... +|.
T Consensus 276 ~~~~ye~ 282 (296)
T KOG1540|consen 276 SVNGYEN 282 (296)
T ss_pred ccccccc
Confidence 765 443
No 74
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.85 E-value=0.00016 Score=70.77 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=23.4
Q ss_pred cccCCHHHHHHHHHhCCceEEeEEEEEecC
Q 017702 272 TYNATPKELEAIIRTNGNFTIEKMEKLSQP 301 (367)
Q Consensus 272 ~y~~s~eE~~~~l~~~g~F~I~~lE~~~~p 301 (367)
.|+.+.+|+++++++.| |+|...+....+
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~~~ 303 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTATQ 303 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEeecc
Confidence 46679999999999997 999877765443
No 75
>PTZ00146 fibrillarin; Provisional
Probab=97.85 E-value=0.00024 Score=68.54 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.3
Q ss_pred ceEEeeecCCCCcccHHHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~i 84 (367)
-.+|+|+|||+|..|..+.+.+
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiV 154 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLV 154 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHh
Confidence 3699999999999998886444
No 76
>PHA03411 putative methyltransferase; Provisional
Probab=97.83 E-value=0.0001 Score=70.46 Aligned_cols=119 Identities=10% Similarity=0.080 Sum_probs=68.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFH 142 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy 142 (367)
..+|+|+|||+|..++.+.... + ..+|+..|+-. ++-.+.+...+ +.-+..+. +.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-----------------~---~~~V~gVDisp-~al~~Ar~n~~-~v~~v~~D---~~ 119 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-----------------K---PEKIVCVELNP-EFARIGKRLLP-EAEWITSD---VF 119 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-----------------C---CCEEEEEECCH-HHHHHHHHhCc-CCEEEECc---hh
Confidence 3689999999998887664211 1 23677778764 22233332211 12233333 33
Q ss_pred ccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhccCce
Q 017702 143 SRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKN--DMESFLNARAEELVPGGL 220 (367)
Q Consensus 143 ~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~--D~~~fL~~Ra~EL~pGG~ 220 (367)
+ +.+..++|+|+|+-.++++..... . ....|+.|.. ..+ .+..||...+.-|+|+|.
T Consensus 120 e-~~~~~kFDlIIsNPPF~~l~~~d~--~--~~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~G~ 178 (279)
T PHA03411 120 E-FESNEKFDVVISNPPFGKINTTDT--K--DVFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPTGS 178 (279)
T ss_pred h-hcccCCCcEEEEcCCccccCchhh--h--hhhhhccCcc----------------ccccccHHHHHhhhHheecCCce
Confidence 2 234578999999999998642211 0 0012221100 001 156789999999999998
Q ss_pred EEEEeec
Q 017702 221 MVLILAA 227 (367)
Q Consensus 221 lvl~~~g 227 (367)
+.+...|
T Consensus 179 ~~~~yss 185 (279)
T PHA03411 179 AGFAYSG 185 (279)
T ss_pred EEEEEec
Confidence 8877666
No 77
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.82 E-value=3.8e-05 Score=76.02 Aligned_cols=105 Identities=14% Similarity=0.248 Sum_probs=65.0
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc--ccceeeccCccc
Q 017702 64 FKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA--RKYFAAGLPGSF 141 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~gvp~SF 141 (367)
-+|+|+|||+|..++.+.+. .| ..+|+..|....-....=+++... ..-+. .++.
T Consensus 198 g~VLDlGCG~G~ls~~la~~-----------------~p---~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~---~~D~ 254 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH-----------------SP---KIRLTLSDVSAAALESSRATLAANGLEGEVF---ASNV 254 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh-----------------CC---CCEEEEEECCHHHHHHHHHHHHHcCCCCEEE---Eccc
Confidence 48999999999988876522 13 456888887532211111111110 11122 2223
Q ss_pred cccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceE
Q 017702 142 HSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
+.. .++.+|+|+|+-.+||.-.. ...+...|++.-++-|+|||.|
T Consensus 255 ~~~--~~~~fDlIvsNPPFH~g~~~---------------------------------~~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 255 FSD--IKGRFDMIISNPPFHDGIQT---------------------------------SLDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred ccc--cCCCccEEEECCCccCCccc---------------------------------cHHHHHHHHHHHHHhcCcCCEE
Confidence 332 35789999999999983211 0125567899999999999999
Q ss_pred EEEee
Q 017702 222 VLILA 226 (367)
Q Consensus 222 vl~~~ 226 (367)
+++..
T Consensus 300 ~iVan 304 (342)
T PRK09489 300 RIVAN 304 (342)
T ss_pred EEEEe
Confidence 88764
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.82 E-value=5.4e-05 Score=75.79 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=63.5
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcC----Ccc--ccceeecc
Q 017702 64 FKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSL----PHA--RKYFAAGL 137 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l----~~~--~~~f~~gv 137 (367)
.+|+|+|||+|..++.+.+. .| ..+|+..|...--....=.++ +.. +--|..+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~-----------------~P---~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~- 288 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK-----------------NP---QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN- 288 (378)
T ss_pred CeEEEEeccccHHHHHHHHh-----------------CC---CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc-
Confidence 59999999999988866522 23 457888888631111111111 100 1122222
Q ss_pred CccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 138 PGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
..+..+ ++.++|+|+|+-.+|+...++. ....++++.-.+-|+|
T Consensus 289 --D~l~~~-~~~~fDlIlsNPPfh~~~~~~~---------------------------------~ia~~l~~~a~~~Lkp 332 (378)
T PRK15001 289 --NALSGV-EPFRFNAVLCNPPFHQQHALTD---------------------------------NVAWEMFHHARRCLKI 332 (378)
T ss_pred --cccccC-CCCCEEEEEECcCcccCccCCH---------------------------------HHHHHHHHHHHHhccc
Confidence 233333 5578999999989988543221 0122467777788999
Q ss_pred CceEEEEe
Q 017702 218 GGLMVLIL 225 (367)
Q Consensus 218 GG~lvl~~ 225 (367)
||.|+++.
T Consensus 333 GG~L~iV~ 340 (378)
T PRK15001 333 NGELYIVA 340 (378)
T ss_pred CCEEEEEE
Confidence 99999885
No 79
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.81 E-value=9e-05 Score=60.98 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhccCceEEEEee
Q 017702 205 ESFLNARAEELVPGGLMVLILA 226 (367)
Q Consensus 205 ~~fL~~Ra~EL~pGG~lvl~~~ 226 (367)
..+++...+.|+|||++++.+.
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEec
Confidence 3689999999999999998763
No 80
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.80 E-value=9.7e-05 Score=57.17 Aligned_cols=99 Identities=25% Similarity=0.308 Sum_probs=61.6
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHh---hcCCccccceeeccCccc
Q 017702 65 KIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLF---KSLPHARKYFAAGLPGSF 141 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf---~~l~~~~~~f~~gvp~SF 141 (367)
+|+|+|||.|.++..+.. . + ..+++..|+..+-....- ......+..|..+. +
T Consensus 1 ~ildig~G~G~~~~~~~~-----------~-------~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 56 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----------G-------P---GARVTGVDISPVALELARKAAAALLADNVEVLKGD---A 56 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----------C-------C---CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcC---h
Confidence 589999999998877652 0 1 235777787654333222 11111122233332 2
Q ss_pred cccC-CCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCce
Q 017702 142 HSRL-FPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGL 220 (367)
Q Consensus 142 y~~l-~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 220 (367)
.+.. .+.+++|+++++..++++ + .+...+++....-|+|||.
T Consensus 57 ~~~~~~~~~~~d~i~~~~~~~~~---~----------------------------------~~~~~~l~~~~~~l~~~g~ 99 (107)
T cd02440 57 EELPPEADESFDVIISDPPLHHL---V----------------------------------EDLARFLEEARRLLKPGGV 99 (107)
T ss_pred hhhccccCCceEEEEEccceeeh---h----------------------------------hHHHHHHHHHHHHcCCCCE
Confidence 2222 356789999999999885 1 1444677787888999999
Q ss_pred EEEE
Q 017702 221 MVLI 224 (367)
Q Consensus 221 lvl~ 224 (367)
+++.
T Consensus 100 ~~~~ 103 (107)
T cd02440 100 LVLT 103 (107)
T ss_pred EEEE
Confidence 9876
No 81
>PRK04266 fibrillarin; Provisional
Probab=97.80 E-value=0.00022 Score=66.55 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.7
Q ss_pred HHHHHHHhhccCceEEEEeec
Q 017702 207 FLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 207 fL~~Ra~EL~pGG~lvl~~~g 227 (367)
+|+.-++-|||||+++++...
T Consensus 158 ~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred HHHHHHHhcCCCcEEEEEEec
Confidence 567777889999999998765
No 82
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.73 E-value=0.00016 Score=65.53 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=58.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchH---HHhhcCCccccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFN---TLFKSLPHARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn---~lf~~l~~~~~~f~~gvp~ 139 (367)
..+|+|+|||+|..++.+.... | ..+|+--|....--. ...+.....+--|..+...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-----------------~---~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~ 105 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-----------------P---ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAE 105 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-----------------C---CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHh
Confidence 5899999999999998876321 1 235666666532111 0111111111123333322
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
+ +.+.+++|+++|... .++..|++..++-|+|||
T Consensus 106 ~----~~~~~~fDlV~~~~~------------------------------------------~~~~~~l~~~~~~LkpGG 139 (187)
T PRK00107 106 E----FGQEEKFDVVTSRAV------------------------------------------ASLSDLVELCLPLLKPGG 139 (187)
T ss_pred h----CCCCCCccEEEEccc------------------------------------------cCHHHHHHHHHHhcCCCe
Confidence 2 223678999998521 134468999999999999
Q ss_pred eEEEEeec
Q 017702 220 LMVLILAA 227 (367)
Q Consensus 220 ~lvl~~~g 227 (367)
++++..+.
T Consensus 140 ~lv~~~~~ 147 (187)
T PRK00107 140 RFLALKGR 147 (187)
T ss_pred EEEEEeCC
Confidence 99988643
No 83
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.73 E-value=0.00015 Score=66.87 Aligned_cols=142 Identities=20% Similarity=0.331 Sum_probs=79.3
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhh-cCCc----cccceee
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFK-SLPH----ARKYFAA 135 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~-~l~~----~~~~f~~ 135 (367)
.+..+.+|.|||.|.-|-.++... .+ +|-+-|.. -.|-.-.+ .+.+ -..+|..
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~--------------------f~-~VDlVEp~-~~Fl~~a~~~l~~~~~~v~~~~~~ 111 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV--------------------FD-EVDLVEPV-EKFLEQAKEYLGKDNPRVGEFYCV 111 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---------------------S-EEEEEES--HHHHHHHHHHTCCGGCCEEEEEES
T ss_pred CCcceEEecccccchhHHHHHHHh--------------------cC-EeEEeccC-HHHHHHHHHHhcccCCCcceEEec
Confidence 457999999999999998665111 01 22222222 12222222 1211 1245556
Q ss_pred ccCccccccCCCC-CceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHh
Q 017702 136 GLPGSFHSRLFPR-SSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEE 214 (367)
Q Consensus 136 gvp~SFy~~l~P~-~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 214 (367)
|. +..-|+ +..|+||.-||+-.|.+ .|+..||+++.+.
T Consensus 112 gL-----Q~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~RCk~~ 150 (218)
T PF05891_consen 112 GL-----QDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLKRCKQA 150 (218)
T ss_dssp -G-----GG----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHHHHHHH
T ss_pred CH-----hhccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHHHHHHh
Confidence 63 444465 79999999888887664 4999999999999
Q ss_pred hccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeE
Q 017702 215 LVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEK 294 (367)
Q Consensus 215 L~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~ 294 (367)
|+|||.+|+==-. ..++. .+++ +-| ....||.+.|+++++++| ++|.+
T Consensus 151 L~~~G~IvvKEN~-~~~~~--------~~~D------------------~~D----sSvTRs~~~~~~lF~~AG-l~~v~ 198 (218)
T PF05891_consen 151 LKPNGVIVVKENV-SSSGF--------DEFD------------------EED----SSVTRSDEHFRELFKQAG-LRLVK 198 (218)
T ss_dssp EEEEEEEEEEEEE-ESSSE--------EEEE------------------TTT----TEEEEEHHHHHHHHHHCT--EEEE
T ss_pred CcCCcEEEEEecC-CCCCC--------cccC------------------Ccc----CeeecCHHHHHHHHHHcC-CEEEE
Confidence 9999988773222 11110 0000 011 123789999999999997 88877
Q ss_pred EEE
Q 017702 295 MEK 297 (367)
Q Consensus 295 lE~ 297 (367)
-+.
T Consensus 199 ~~~ 201 (218)
T PF05891_consen 199 EEK 201 (218)
T ss_dssp EEE
T ss_pred ecc
Confidence 654
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.69 E-value=0.0002 Score=64.40 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhccCceEEEEeec
Q 017702 203 DMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
+...+|+.-.+-|+|||++++..+.
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEcc
Confidence 5667899999999999999997654
No 85
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.66 E-value=0.00023 Score=62.65 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEe
Q 017702 146 FPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLIL 225 (367)
Q Consensus 146 ~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 225 (367)
++++++|++++++++||+. |...+|+.-++-|||||+|++.-
T Consensus 40 ~~~~~fD~v~~~~~l~~~~--------------------------------------d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVV--------------------------------------DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred CCCCCeeEEEecchhhcCC--------------------------------------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 4678999999999999964 33468899999999999999988
Q ss_pred ecccCC
Q 017702 226 AAVVPD 231 (367)
Q Consensus 226 ~g~~~n 231 (367)
++ .++
T Consensus 82 ~~-~~~ 86 (160)
T PLN02232 82 FN-KSN 86 (160)
T ss_pred CC-CCC
Confidence 77 544
No 86
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.63 E-value=0.00026 Score=64.83 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=42.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc---c-ccceeeccC
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH---A-RKYFAAGLP 138 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~---~-~~~f~~gvp 138 (367)
..+|+|+|||+|..|..+.+.+ . .. . +|+--|.-.+--...=+++.. . +-.+..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~--------~-------~~---g-~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d- 132 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI--------E-------RR---G-KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD- 132 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc--------C-------CC---C-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC-
Confidence 4799999999999998776432 0 01 1 456555543211111111111 1 11233333
Q ss_pred ccccccCCCCCceeEEEecccccc
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHW 162 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhW 162 (367)
+.+-+.+.+++|.+++..++++
T Consensus 133 --~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 133 --GKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred --cccCCccCCCccEEEEccCcch
Confidence 3333334578999999988776
No 87
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.62 E-value=0.00027 Score=65.03 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=17.8
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
...+|+|+|||+|.+|..+..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~ 97 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAE 97 (215)
T ss_pred CcCEEEEECCCccHHHHHHHH
Confidence 347999999999999987763
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.59 E-value=0.00027 Score=65.13 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=17.7
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
+..+|+|+|||+|..|..+..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~ 96 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAE 96 (212)
T ss_pred CcCEEEEECCcccHHHHHHHH
Confidence 347999999999999977763
No 89
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.55 E-value=0.00032 Score=70.32 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=65.9
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc---cccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH---ARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~---~~~~f~~gvp~ 139 (367)
.-+++|+|||+|..++.+... .| +..++--|.-..-....-+.+.. .+-.++.+...
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~-----------------~P---~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~ 182 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKN-----------------NP---NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDAR 182 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHh-----------------CC---CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHH
Confidence 358999999999999887632 12 33455555433222222222111 11123333322
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
-+. ..+|++++|.+++++...|..+.. .++ -...||..-++-|+|||
T Consensus 183 ~ll-~~~~~~s~D~I~lnFPdPW~KkrH-------------RRl-------------------v~~~fL~e~~RvLkpGG 229 (390)
T PRK14121 183 LLL-ELLPSNSVEKIFVHFPVPWDKKPH-------------RRV-------------------ISEDFLNEALRVLKPGG 229 (390)
T ss_pred Hhh-hhCCCCceeEEEEeCCCCccccch-------------hhc-------------------cHHHHHHHHHHHcCCCc
Confidence 222 357899999999988888833211 011 12468999999999999
Q ss_pred eEEEEee
Q 017702 220 LMVLILA 226 (367)
Q Consensus 220 ~lvl~~~ 226 (367)
.+.+.+=
T Consensus 230 ~l~l~TD 236 (390)
T PRK14121 230 TLELRTD 236 (390)
T ss_pred EEEEEEE
Confidence 9888773
No 90
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.53 E-value=0.00044 Score=63.32 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=16.8
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~ 81 (367)
+..+|+|+|||+|..|..+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la 97 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA 97 (212)
T ss_pred CCCEEEEECCCccHHHHHHH
Confidence 45799999999999998554
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.49 E-value=0.0002 Score=66.83 Aligned_cols=127 Identities=14% Similarity=0.201 Sum_probs=66.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC---ccccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP---HARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~---~~~~~f~~gvp~ 139 (367)
..+|+|+|||+|..++.+.... | ..+++-.|.-..-....-+.+. ..+--+.. +
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-----------------~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~---~ 144 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-----------------P---DARVTAVDISPEALAVARKNAARLGLDNVTFLQ---S 144 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-----------------C---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE---C
Confidence 4689999999999888776321 2 2367777765322222211111 11112222 3
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
++.+ .++++++|+++|+--.+..+.... + .+ .+. ...|...-.-......++..|++.-.+.|+|||
T Consensus 145 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~-~--------~~-~~~--~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG 211 (251)
T TIGR03534 145 DWFE-PLPGGKFDLIVSNPPYIPEADIHL-L--------DP-EVR--FHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGG 211 (251)
T ss_pred chhc-cCcCCceeEEEECCCCCchhhhhh-c--------Ch-hhh--hcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCC
Confidence 3443 457789999999644443221110 0 00 000 000000000011223466789999999999999
Q ss_pred eEEEEe
Q 017702 220 LMVLIL 225 (367)
Q Consensus 220 ~lvl~~ 225 (367)
.+++..
T Consensus 212 ~~~~~~ 217 (251)
T TIGR03534 212 WLLLEI 217 (251)
T ss_pred EEEEEE
Confidence 998865
No 92
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.45 E-value=0.00081 Score=64.83 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=64.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc----cccceeeccC
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH----ARKYFAAGLP 138 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~----~~~~f~~gvp 138 (367)
..+|+|+|||+|..++.+.... | ..+++-.|....-....-++... .+--|..+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-----------------~---~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~-- 179 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-----------------P---EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS-- 179 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-----------------C---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC--
Confidence 4689999999999998876322 2 23677777753221111111110 11123333
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHH----HHHH--HHHHhhHHHHHHHHH
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVV----RAYS--TQYKNDMESFLNARA 212 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~--~Q~~~D~~~fL~~Ra 212 (367)
++.+. +|++++|+++|+ |+-+...... ..++++. .|.. +......+.|++.-.
T Consensus 180 -D~~~~-~~~~~fD~Iv~N---------PPy~~~~~~~----------~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~ 238 (284)
T TIGR03533 180 -DLFAA-LPGRKYDLIVSN---------PPYVDAEDMA----------DLPAEYHHEPELALASGEDGLDLVRRILAEAA 238 (284)
T ss_pred -chhhc-cCCCCccEEEEC---------CCCCCccchh----------hCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHH
Confidence 23333 366689999995 4433211100 0111110 0000 011234456888888
Q ss_pred HhhccCceEEEEee
Q 017702 213 EELVPGGLMVLILA 226 (367)
Q Consensus 213 ~EL~pGG~lvl~~~ 226 (367)
+-|+|||++++++.
T Consensus 239 ~~L~~gG~l~~e~g 252 (284)
T TIGR03533 239 DHLNENGVLVVEVG 252 (284)
T ss_pred HhcCCCCEEEEEEC
Confidence 99999999998874
No 93
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.44 E-value=0.00024 Score=66.26 Aligned_cols=99 Identities=25% Similarity=0.284 Sum_probs=60.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccc----cceeeccC
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHAR----KYFAAGLP 138 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~----~~f~~gvp 138 (367)
-.+|+|+|||-|..|..+.. . -..|+-.|+..-.- ..-+.-.... .|-...
T Consensus 60 g~~vLDvGCGgG~Lse~mAr------------~----------Ga~VtgiD~se~~I-~~Ak~ha~e~gv~i~y~~~~-- 114 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLAR------------L----------GASVTGIDASEKPI-EVAKLHALESGVNIDYRQAT-- 114 (243)
T ss_pred CCeEEEecCCccHhhHHHHH------------C----------CCeeEEecCChHHH-HHHHHhhhhccccccchhhh--
Confidence 48999999999988887752 1 12466666653110 0111000000 011111
Q ss_pred ccccccCC-CCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 139 GSFHSRLF-PRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 139 ~SFy~~l~-P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
-+.|. ..+++|+|.|.-.|+- +|. =..|++.+++-+||
T Consensus 115 ---~edl~~~~~~FDvV~cmEVlEH---v~d-----------------------------------p~~~~~~c~~lvkP 153 (243)
T COG2227 115 ---VEDLASAGGQFDVVTCMEVLEH---VPD-----------------------------------PESFLRACAKLVKP 153 (243)
T ss_pred ---HHHHHhcCCCccEEEEhhHHHc---cCC-----------------------------------HHHHHHHHHHHcCC
Confidence 12333 3379999998555554 553 23599999999999
Q ss_pred CceEEEEeec
Q 017702 218 GGLMVLILAA 227 (367)
Q Consensus 218 GG~lvl~~~g 227 (367)
||.+++++..
T Consensus 154 ~G~lf~STin 163 (243)
T COG2227 154 GGILFLSTIN 163 (243)
T ss_pred CcEEEEeccc
Confidence 9999999986
No 94
>PRK14967 putative methyltransferase; Provisional
Probab=97.44 E-value=0.0039 Score=57.65 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=62.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC--ccccceeeccCcc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP--HARKYFAAGLPGS 140 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~--~~~~~f~~gvp~S 140 (367)
.-+|+|+|||+|..++.+... + .-+++..|....-....-+++. ..+-.+. -++
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~------------------~---~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~---~~d 92 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA------------------G---AGSVTAVDISRRAVRSARLNALLAGVDVDVR---RGD 92 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc------------------C---CCeEEEEECCHHHHHHHHHHHHHhCCeeEEE---ECc
Confidence 369999999999998876521 0 0145666665321111111111 0111122 234
Q ss_pred ccccCCCCCceeEEEeccccccccCCCccccCC-CCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDP-CSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~-~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
+.. .++.+++|+++++--.+.-+... ..++ ..-+|+.| .. ...++..|+..-.+-|+|||
T Consensus 93 ~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~------~~----------~~~~~~~~l~~a~~~Lk~gG 153 (223)
T PRK14967 93 WAR-AVEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG------PD----------GRAVLDRLCDAAPALLAPGG 153 (223)
T ss_pred hhh-hccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC------Cc----------HHHHHHHHHHHHHHhcCCCc
Confidence 444 35778999999964332211110 0000 00011110 00 11345678888889999999
Q ss_pred eEEEEeec
Q 017702 220 LMVLILAA 227 (367)
Q Consensus 220 ~lvl~~~g 227 (367)
++++....
T Consensus 154 ~l~~~~~~ 161 (223)
T PRK14967 154 SLLLVQSE 161 (223)
T ss_pred EEEEEEec
Confidence 99877654
No 95
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.42 E-value=0.0026 Score=57.41 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhhccCceEEEEeec
Q 017702 203 DMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
.+...|+...+-|+|||++|++..-
T Consensus 113 ~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 113 NIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CHHHHHHHHHHHcCcCCeEEEEeec
Confidence 3446888888999999999999875
No 96
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.42 E-value=0.00071 Score=55.38 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhccCceEEEEee
Q 017702 203 DMESFLNARAEELVPGGLMVLILA 226 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~ 226 (367)
+...|++.-.+-|+|||.+++.++
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 566799999999999999998875
No 97
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.41 E-value=0.0018 Score=59.42 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=48.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCc-cchHHHhhcCCccccceeeccCc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSD-NDFNTLFKSLPHARKYFAAGLPG 139 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~-NDFn~lf~~l~~~~~~f~~gvp~ 139 (367)
++..+|||+|||.+..+..+ . . .+.|+-=||.. |+. +-++-
T Consensus 71 ~~~~viaD~GCGdA~la~~~--------~------------~---~~~V~SfDLva~n~~------------Vtacd--- 112 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--------P------------N---KHKVHSFDLVAPNPR------------VTACD--- 112 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH----------------------S------EEEEESS-SSTT------------EEES----
T ss_pred CCCEEEEECCCchHHHHHhc--------c------------c---CceEEEeeccCCCCC------------EEEec---
Confidence 45689999999998877322 1 1 22455556653 221 11111
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
.-+--++++|+|+++.+-+|.= .||..||.--.+-|||||
T Consensus 113 -ia~vPL~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G 152 (219)
T PF05148_consen 113 -IANVPLEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGG 152 (219)
T ss_dssp -TTS-S--TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEE
T ss_pred -CccCcCCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCc
Confidence 1223358899999988655532 278889999999999999
Q ss_pred eEEEEeec
Q 017702 220 LMVLILAA 227 (367)
Q Consensus 220 ~lvl~~~g 227 (367)
.|.+.=.-
T Consensus 153 ~L~IAEV~ 160 (219)
T PF05148_consen 153 ILKIAEVK 160 (219)
T ss_dssp EEEEEEEG
T ss_pred EEEEEEec
Confidence 99887664
No 98
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.38 E-value=0.00067 Score=61.47 Aligned_cols=94 Identities=24% Similarity=0.274 Sum_probs=62.3
Q ss_pred CCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEE
Q 017702 145 LFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLI 224 (367)
Q Consensus 145 l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 224 (367)
-||++|+|.++-+-|||=+.+ |. ..|+ +-|+-|...+++
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~-P~-------------------------------------~vL~---EmlRVgr~~IVs 108 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRR-PD-------------------------------------EVLE---EMLRVGRRAIVS 108 (193)
T ss_pred hCCCCCccEEehHhHHHhHhH-HH-------------------------------------HHHH---HHHHhcCeEEEE
Confidence 379999999999999998764 32 1232 446778888888
Q ss_pred eecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcc------cCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 225 LAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTY------NATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 225 ~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y------~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
|+. -+ .|. .-..|.-.|..+..+ .+..+|| +.|..+++++.++.| ++|++-..+
T Consensus 109 FPN-Fg------------~W~----~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~ 168 (193)
T PF07021_consen 109 FPN-FG------------HWR----NRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFL 168 (193)
T ss_pred ecC-hH------------HHH----HHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEE
Confidence 864 11 133 122444467665543 2333444 579999999999986 888876655
Q ss_pred e
Q 017702 299 S 299 (367)
Q Consensus 299 ~ 299 (367)
.
T Consensus 169 ~ 169 (193)
T PF07021_consen 169 D 169 (193)
T ss_pred c
Confidence 4
No 99
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.36 E-value=0.0012 Score=62.23 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHHHHHHHhhccCceEEEEeec
Q 017702 206 SFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 206 ~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
.++..-.+-|+|||+++++...
T Consensus 194 ~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 194 ELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHHHHhcCCCcEEEEEECc
Confidence 4666677889999999987654
No 100
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.27 E-value=0.0011 Score=65.30 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=34.9
Q ss_pred CceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeec
Q 017702 149 SSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 149 ~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
..+|+|=+-+|||+.=.- +.-.+.||+.-++-|+|||+|+.+++.
T Consensus 144 ~~FDvVScQFalHY~Fes----------------------------------e~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFES----------------------------------EEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp S-EEEEEEES-GGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCcceeehHHHHHHhcCC----------------------------------HHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 599999999999994421 124457999999999999999999984
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.26 E-value=0.0011 Score=64.00 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.0
Q ss_pred HHHHHHHHhhccCceEEEEeec
Q 017702 206 SFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 206 ~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
.++..-.+-|+|||+++++...
T Consensus 240 ~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 240 ELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeCc
Confidence 4666777889999999998776
No 102
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.24 E-value=0.0015 Score=63.74 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhccCceEEEEee
Q 017702 204 MESFLNARAEELVPGGLMVLILA 226 (367)
Q Consensus 204 ~~~fL~~Ra~EL~pGG~lvl~~~ 226 (367)
.+.+++.-.+-|+|||++++...
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 34588888889999999998764
No 103
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.19 E-value=0.0052 Score=60.32 Aligned_cols=190 Identities=17% Similarity=0.224 Sum_probs=110.1
Q ss_pred ccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHh
Q 017702 15 MVGGDDAYSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQR 94 (367)
Q Consensus 15 M~gg~g~~sY~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~ 94 (367)
|.||-|..+|.-+-..|+... ....++.+.+.++.. +....-..+|.|-|.|..+-.+++.
T Consensus 138 ~l~~~~~~~~~~~~~~~~sm~-~l~~~~~~~il~~~~-------Gf~~v~~avDvGgGiG~v~k~ll~~----------- 198 (342)
T KOG3178|consen 138 MLGGYGGADERFSKDFNGSMS-FLSTLVMKKILEVYT-------GFKGVNVAVDVGGGIGRVLKNLLSK----------- 198 (342)
T ss_pred hhhhhcccccccHHHHHHHHH-HHHHHHHHhhhhhhc-------ccccCceEEEcCCcHhHHHHHHHHh-----------
Confidence 567656555544444444432 223333333322221 1345788999999999998887741
Q ss_pred ccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccce--eeccCccccccCCCCCceeEEEeccccccccCCCccccC
Q 017702 95 TTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYF--AAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVD 172 (367)
Q Consensus 95 ~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f--~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~ 172 (367)
-| .|..+-=|+|. +...-+ .+. +--+.|.+++. .|++- +||.-|+||-+.
T Consensus 199 ------fp---~ik~infdlp~-----v~~~a~---~~~~gV~~v~gdmfq~-~P~~d--aI~mkWiLhdwt-------- 250 (342)
T KOG3178|consen 199 ------YP---HIKGINFDLPF-----VLAAAP---YLAPGVEHVAGDMFQD-TPKGD--AIWMKWILHDWT-------- 250 (342)
T ss_pred ------CC---CCceeecCHHH-----HHhhhh---hhcCCcceeccccccc-CCCcC--eEEEEeecccCC--------
Confidence 24 45666667763 111111 111 33366678888 88665 999988888322
Q ss_pred CCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCC--CchhhHHHHHHHH
Q 017702 173 PCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSN--SYVGVFNNILGSC 250 (367)
Q Consensus 173 ~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~--~~~~~~~~~l~~a 250 (367)
.+|..+||+++++-|+|||.+++.=.- .+.+..... .......+.+-.+
T Consensus 251 ----------------------------DedcvkiLknC~~sL~~~GkIiv~E~V-~p~e~~~dd~~s~v~~~~d~lm~~ 301 (342)
T KOG3178|consen 251 ----------------------------DEDCVKILKNCKKSLPPGGKIIVVENV-TPEEDKFDDIDSSVTRDMDLLMLT 301 (342)
T ss_pred ----------------------------hHHHHHHHHHHHHhCCCCCEEEEEecc-CCCCCCccccccceeehhHHHHHH
Confidence 148889999999999999998876552 222111110 0111112222222
Q ss_pred HHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEEEE
Q 017702 251 FNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKMEKL 298 (367)
Q Consensus 251 l~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE~~ 298 (367)
+. .-|+ -++.+|++..+.++| |.+-.+-..
T Consensus 302 ~~---~~Gk--------------ert~~e~q~l~~~~g-F~~~~~~~~ 331 (342)
T KOG3178|consen 302 QT---SGGK--------------ERTLKEFQALLPEEG-FPVCMVALT 331 (342)
T ss_pred Hh---ccce--------------eccHHHHHhcchhhc-CceeEEEec
Confidence 22 2243 678999999999886 887665443
No 104
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.18 E-value=0.0017 Score=62.39 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhhccCceEEEEeec
Q 017702 203 DMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
+.+.+++.-.+-|+|||+|+++...
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEEEECc
Confidence 5667888888999999999988854
No 105
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.14 E-value=0.0062 Score=57.66 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhccCceEEEEee
Q 017702 204 MESFLNARAEELVPGGLMVLILA 226 (367)
Q Consensus 204 ~~~fL~~Ra~EL~pGG~lvl~~~ 226 (367)
+..++..-.+-|+|||++++...
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 45688888889999999998874
No 106
>PRK14968 putative methyltransferase; Provisional
Probab=97.10 E-value=0.007 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhhccCceEEEEeec
Q 017702 203 DMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
.+..|++...+-|+|||.+++....
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 3567889999999999999887654
No 107
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.09 E-value=0.0043 Score=56.34 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=17.2
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~ 81 (367)
...+|+|+|||+|..++.+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH
Confidence 44799999999999998765
No 108
>PRK00811 spermidine synthase; Provisional
Probab=97.04 E-value=0.0016 Score=62.69 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=64.5
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchH---HHhhcC-----Cccccc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFN---TLFKSL-----PHARKY 132 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn---~lf~~l-----~~~~~~ 132 (367)
+++.+|+|+|||+|..+..+++.- .. + +|...|+-.+=-. ..|..+ ...+--
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~----------------~~---~-~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~ 134 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP----------------SV---E-KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVE 134 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC----------------CC---C-EEEEEeCCHHHHHHHHHHhHHhccccccCCceE
Confidence 456799999999999988775210 01 2 4556565431111 111111 112234
Q ss_pred eeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017702 133 FAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARA 212 (367)
Q Consensus 133 f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra 212 (367)
+..+++..|... +++++|+|++-.+-+| .|. ..-| -..|++...
T Consensus 135 v~~~Da~~~l~~--~~~~yDvIi~D~~dp~---~~~------------------------~~l~-------t~ef~~~~~ 178 (283)
T PRK00811 135 LVIGDGIKFVAE--TENSFDVIIVDSTDPV---GPA------------------------EGLF-------TKEFYENCK 178 (283)
T ss_pred EEECchHHHHhh--CCCcccEEEECCCCCC---Cch------------------------hhhh-------HHHHHHHHH
Confidence 566776666655 5789999999665444 110 0111 135888888
Q ss_pred HhhccCceEEEEe
Q 017702 213 EELVPGGLMVLIL 225 (367)
Q Consensus 213 ~EL~pGG~lvl~~ 225 (367)
+-|+|||+|++..
T Consensus 179 ~~L~~gGvlv~~~ 191 (283)
T PRK00811 179 RALKEDGIFVAQS 191 (283)
T ss_pred HhcCCCcEEEEeC
Confidence 9999999998754
No 109
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.03 E-value=0.0028 Score=64.67 Aligned_cols=125 Identities=11% Similarity=0.096 Sum_probs=71.3
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc---cccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH---ARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~---~~~~f~~gvp~ 139 (367)
..+|+|+|||+|.-|..+.... .+ .-+|+-.|+..+-...+=+++.. ..-.+..+...
T Consensus 238 g~~VLD~cagpGgkt~~la~~~----------------~~---~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~ 298 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELM----------------KD---QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE 298 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHc----------------CC---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 4689999999999999886433 11 23677888864333333222211 11123334322
Q ss_pred cccccCCCCCceeEEEe---ccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 140 SFHSRLFPRSSIHFVHT---SYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S---~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
.+- . ++++++|.|++ ++.+..+.+.|.... . .+++ -.++..+....+|..-++-|+
T Consensus 299 ~l~-~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~--------------~-~~~~----~~~~l~~~Q~~iL~~a~~~Lk 357 (431)
T PRK14903 299 RLT-E-YVQDTFDRILVDAPCTSLGTARNHPEVLR--------------R-VNKE----DFKKLSEIQLRIVSQAWKLLE 357 (431)
T ss_pred hhh-h-hhhccCCEEEECCCCCCCccccCChHHHH--------------h-CCHH----HHHHHHHHHHHHHHHHHHhcC
Confidence 221 1 23567899987 233344443332111 0 1111 223444566788999999999
Q ss_pred cCceEEEEeec
Q 017702 217 PGGLMVLILAA 227 (367)
Q Consensus 217 pGG~lvl~~~g 227 (367)
|||.||.++..
T Consensus 358 pGG~LvYsTCs 368 (431)
T PRK14903 358 KGGILLYSTCT 368 (431)
T ss_pred CCCEEEEEECC
Confidence 99999999986
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.03 E-value=0.0029 Score=59.97 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhhccCceEEEEe
Q 017702 202 NDMESFLNARAEELVPGGLMVLIL 225 (367)
Q Consensus 202 ~D~~~fL~~Ra~EL~pGG~lvl~~ 225 (367)
.++..|++.-.+-|+|||++++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 456678888889999999999876
No 111
>PLN03075 nicotianamine synthase; Provisional
Probab=96.94 E-value=0.0058 Score=59.24 Aligned_cols=105 Identities=22% Similarity=0.244 Sum_probs=61.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCc--cchH-HHhhcCC--ccccceeec
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSD--NDFN-TLFKSLP--HARKYFAAG 136 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~--NDFn-~lf~~l~--~~~~~f~~g 136 (367)
.+-+|||+|||.|+.|..++..- . .| .-++.--|.-. +++. .+++..+ ..+--|..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~------~---------~p---~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~ 184 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKH------H---------LP---TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA 184 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHh------c---------CC---CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC
Confidence 56899999999999877765321 0 12 22344445542 2211 1221111 112345555
Q ss_pred cCccccccCCC-CCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 017702 137 LPGSFHSRLFP-RSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEEL 215 (367)
Q Consensus 137 vp~SFy~~l~P-~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 215 (367)
.-.+ +.+ .+.+|++|+. ++|.+++. |=...|+.-++-|
T Consensus 185 Da~~----~~~~l~~FDlVF~~-ALi~~dk~------------------------------------~k~~vL~~l~~~L 223 (296)
T PLN03075 185 DVMD----VTESLKEYDVVFLA-ALVGMDKE------------------------------------EKVKVIEHLGKHM 223 (296)
T ss_pred chhh----cccccCCcCEEEEe-cccccccc------------------------------------cHHHHHHHHHHhc
Confidence 4332 222 3789999999 66554322 1125788889999
Q ss_pred ccCceEEEEe
Q 017702 216 VPGGLMVLIL 225 (367)
Q Consensus 216 ~pGG~lvl~~ 225 (367)
+|||.+++-+
T Consensus 224 kPGG~Lvlr~ 233 (296)
T PLN03075 224 APGALLMLRS 233 (296)
T ss_pred CCCcEEEEec
Confidence 9999999887
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.92 E-value=0.0065 Score=61.90 Aligned_cols=125 Identities=15% Similarity=0.174 Sum_probs=66.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc--cccceeeccCcc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH--ARKYFAAGLPGS 140 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~gvp~S 140 (367)
.-+|+|+|||+|.-|+.+.+.. + .-.|+-.|....--..+-+++.. ....+..+....
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~-----------------~---~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~ 304 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA-----------------P---QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD 304 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc-----------------C---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc
Confidence 4689999999999998776432 0 12466667654322222222211 012234443221
Q ss_pred ccccCCCCCceeEEEecc---ccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 141 FHSRLFPRSSIHFVHTSY---ALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~---alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
....++++++|.+++.. ..--+.+-|.. .|. ..++-. ..+......+|..-++-|+|
T Consensus 305 -~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~-------~~~--------~~~~~l----~~l~~~q~~iL~~a~~~Lkp 364 (427)
T PRK10901 305 -PAQWWDGQPFDRILLDAPCSATGVIRRHPDI-------KWL--------RRPEDI----AALAALQSEILDALWPLLKP 364 (427)
T ss_pred -chhhcccCCCCEEEECCCCCcccccccCccc-------ccc--------CCHHHH----HHHHHHHHHHHHHHHHhcCC
Confidence 11224567899999621 11111122221 011 112212 22334556789898999999
Q ss_pred CceEEEEeec
Q 017702 218 GGLMVLILAA 227 (367)
Q Consensus 218 GG~lvl~~~g 227 (367)
||+|+.++..
T Consensus 365 GG~lvystcs 374 (427)
T PRK10901 365 GGTLLYATCS 374 (427)
T ss_pred CCEEEEEeCC
Confidence 9999988864
No 113
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.89 E-value=0.0025 Score=65.24 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.1
Q ss_pred CCCceEEeeecCCCCcccHHHHH
Q 017702 60 TLKPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~~ 82 (367)
.....+++|+|||+|.....+++
T Consensus 115 ~g~iR~~LDvGcG~aSF~a~l~~ 137 (506)
T PF03141_consen 115 GGGIRTALDVGCGVASFGAYLLE 137 (506)
T ss_pred CCceEEEEeccceeehhHHHHhh
Confidence 45678889999999999887763
No 114
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.88 E-value=0.0065 Score=61.88 Aligned_cols=126 Identities=15% Similarity=0.130 Sum_probs=69.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccc-cceeeccCccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHAR-KYFAAGLPGSF 141 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~gvp~SF 141 (367)
..+|+|+|||+|.-|..+.+.+ . .-+++-.|...+-...+-+++.... ..-+..+.+.-
T Consensus 239 g~~VLDlcag~G~kt~~la~~~--------~------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA--------P------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc--------C------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 4799999999999999886432 0 1157777776544333333332110 11111111211
Q ss_pred cc--cCCCCCceeEEEe---ccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 142 HS--RLFPRSSIHFVHT---SYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 142 y~--~l~P~~svd~~~S---~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
.+ ...+.+++|.+++ ++++--+.+.|+.. | ..+ ++..+ +..+.-..+|..-++-|+
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~-------~-------~~~-~~~~~----~l~~lQ~~lL~~a~~~Lk 359 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIK-------W-------LRK-PRDIA----ELAELQSEILDAIWPLLK 359 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCcchh-------h-------cCC-HHHHH----HHHHHHHHHHHHHHHhcC
Confidence 11 1125678999987 23333344444321 1 111 22222 233345678888889999
Q ss_pred cCceEEEEeec
Q 017702 217 PGGLMVLILAA 227 (367)
Q Consensus 217 pGG~lvl~~~g 227 (367)
|||+||.++..
T Consensus 360 pgG~lvystcs 370 (426)
T TIGR00563 360 TGGTLVYATCS 370 (426)
T ss_pred CCcEEEEEeCC
Confidence 99999999886
No 115
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.88 E-value=0.0083 Score=61.46 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=69.8
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc---cccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH---ARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~---~~~~f~~gvp~ 139 (367)
.-+|+|+|||+|..|..+.+.+ .+ .-+|+-.|+...-...+-+.+.. .+-.+..+...
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~----------------~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~ 311 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM----------------QN---RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR 311 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh----------------CC---CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc
Confidence 3689999999999998776433 11 12678888875443333222221 11224444433
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCC-cccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKG-SIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g-~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
. +.|++++|.++. ++|+.-... +.+. .+... .+++..+ +..+....+|..-++-|+||
T Consensus 312 ~----~~~~~~fD~Vl~--------D~Pcsg~g~----~~r~p~~~~~-~~~~~~~----~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 312 S----FSPEEQPDAILL--------DAPCTGTGV----LGRRAELRWK-LTPEKLA----ELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred c----cccCCCCCEEEE--------cCCCCCcch----hhcCcchhhc-CCHHHHH----HHHHHHHHHHHHHHHhcCCC
Confidence 3 236678999985 333321100 0000 00000 1122222 23345667999999999999
Q ss_pred ceEEEEeec
Q 017702 219 GLMVLILAA 227 (367)
Q Consensus 219 G~lvl~~~g 227 (367)
|+|+.++..
T Consensus 371 G~lvystcs 379 (445)
T PRK14904 371 GVLVYATCS 379 (445)
T ss_pred cEEEEEeCC
Confidence 999999986
No 116
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.82 E-value=0.0056 Score=62.00 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhccCceEEEEee
Q 017702 204 MESFLNARAEELVPGGLMVLILA 226 (367)
Q Consensus 204 ~~~fL~~Ra~EL~pGG~lvl~~~ 226 (367)
++++++.-.+-|+|||.++++..
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEC
Confidence 45688887889999999987763
No 117
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.78 E-value=0.0057 Score=57.29 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=38.2
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEee
Q 017702 147 PRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILA 226 (367)
Q Consensus 147 P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 226 (367)
-..-+|+|.|.+-..| ||....+ .-+.+||+.-+.-|.|||+||++=.
T Consensus 163 ~~~~fDiIlcLSiTkW--------------------IHLNwgD------------~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKW--------------------IHLNWGD------------DGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccccEEEEEEeeee--------------------Eeccccc------------HHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 3458999999999999 3333332 3688899999999999999998754
Q ss_pred c
Q 017702 227 A 227 (367)
Q Consensus 227 g 227 (367)
+
T Consensus 211 p 211 (288)
T KOG2899|consen 211 P 211 (288)
T ss_pred c
Confidence 4
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.76 E-value=0.0033 Score=65.52 Aligned_cols=131 Identities=12% Similarity=0.123 Sum_probs=64.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccc-cceeeccCccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHAR-KYFAAGLPGSF 141 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~gvp~SF 141 (367)
..+|+|+|||+|..++.+.... | ..+++..|....-....-+++.... .--+.-+-+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-----------------p---~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~ 198 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-----------------P---NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW 198 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-----------------C---CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch
Confidence 4689999999999998776322 2 3467888885321111111110000 00011123344
Q ss_pred cccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceE
Q 017702 142 HSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
++. ++.+++|+++|+--....+..+....+. ..|-. .+-.. ..++ ....++.+++.-.+-|+|||.+
T Consensus 199 ~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v--~~~EP-~~AL~-gg~d--------Gl~~~~~il~~a~~~L~~gG~l 265 (506)
T PRK01544 199 FEN-IEKQKFDFIVSNPPYISHSEKSEMAIET--INYEP-SIALF-AEED--------GLQAYFIIAENAKQFLKPNGKI 265 (506)
T ss_pred hhh-CcCCCccEEEECCCCCCchhhhhcCchh--hccCc-HHHhc-CCcc--------HHHHHHHHHHHHHHhccCCCEE
Confidence 443 3567899999963333222211100000 00000 00000 0111 1223455888888899999999
Q ss_pred EEEee
Q 017702 222 VLILA 226 (367)
Q Consensus 222 vl~~~ 226 (367)
+++..
T Consensus 266 ~lEig 270 (506)
T PRK01544 266 ILEIG 270 (506)
T ss_pred EEEEC
Confidence 98753
No 119
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.67 E-value=0.026 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhhccCceEEEEeec
Q 017702 203 DMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
++..+|+.-.+-|+|||+|++....
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 4556788888889999999998765
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.66 E-value=0.013 Score=59.89 Aligned_cols=125 Identities=16% Similarity=0.130 Sum_probs=66.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC---ccccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP---HARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~---~~~~~f~~gvp~ 139 (367)
.-+|+|+|||+|..|+.+.+.. .+ .-+++-.|+-.+--..+-+++. ...-.+..+...
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~----------------~~---~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 311 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL----------------KN---TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR 311 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh----------------CC---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 3689999999999999887433 11 1257777775433222222221 111223334322
Q ss_pred cccccCCCCCceeEEEec---cccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 140 SFHSRLFPRSSIHFVHTS---YALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~---~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
.+- ..++ +++|++++. +....+.+.|... |.+ .++..+ ...+--..+|+.-.+-|+
T Consensus 312 ~~~-~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~-------~~~--------~~~~~~----~l~~~q~~iL~~a~~~Lk 370 (444)
T PRK14902 312 KVH-EKFA-EKFDKILVDAPCSGLGVIRRKPDIK-------YNK--------TKEDIE----SLQEIQLEILESVAQYLK 370 (444)
T ss_pred ccc-chhc-ccCCEEEEcCCCCCCeeeccCcchh-------hcC--------CHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 211 1123 789999973 2222233333211 111 111111 222333568888889999
Q ss_pred cCceEEEEeec
Q 017702 217 PGGLMVLILAA 227 (367)
Q Consensus 217 pGG~lvl~~~g 227 (367)
|||+||.++..
T Consensus 371 pGG~lvystcs 381 (444)
T PRK14902 371 KGGILVYSTCT 381 (444)
T ss_pred CCCEEEEEcCC
Confidence 99999977654
No 121
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.011 Score=54.26 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=18.6
Q ss_pred CCceEEeeecCCCCcccHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~ 82 (367)
....+|+|+|||+|.+|..+.+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~ 92 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLAR 92 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHH
Confidence 3458999999999999988754
No 122
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.02 Score=55.47 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.9
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~ 81 (367)
+..+|+|+|||||.+++...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 46899999999999999876
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.57 E-value=0.019 Score=58.57 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=67.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC---ccccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP---HARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~---~~~~~f~~gvp~ 139 (367)
..+|+|+|||+|..|..+.+.+ .+ .-.|+-.|.-..-...+-+++. -.+-.+..+...
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~----------------~~---~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~ 313 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELM----------------GD---QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHh----------------CC---CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence 4689999999999999886433 11 1256777775332222222221 111223334322
Q ss_pred cccccC-CCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 140 SFHSRL-FPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 140 SFy~~l-~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
.+.... ++++++|.++. ++||.-..... -+.+ +... .+++.. +...+.-..+|..-++-||||
T Consensus 314 ~~~~~~~~~~~~fD~Vl~--------DaPCSg~G~~~--r~p~-~~~~-~~~~~~----~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 314 NLLELKPQWRGYFDRILL--------DAPCSGLGTLH--RHPD-ARWR-QTPEKI----QELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred hcccccccccccCCEEEE--------eCCCCcccccc--cCcc-hhhh-CCHHHH----HHHHHHHHHHHHHHHHhcCCC
Confidence 221111 24578899886 44543211000 0000 0000 112222 223345578899999999999
Q ss_pred ceEEEEeec
Q 017702 219 GLMVLILAA 227 (367)
Q Consensus 219 G~lvl~~~g 227 (367)
|+||.++..
T Consensus 378 G~lvystcs 386 (434)
T PRK14901 378 GTLVYATCT 386 (434)
T ss_pred CEEEEEeCC
Confidence 999988765
No 124
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.51 E-value=0.0044 Score=58.52 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhhccCceEEEEeec
Q 017702 203 DMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
||..|+.--.+-|+|||.+.+.=.-
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehh
Confidence 7778999999999999999887654
No 125
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.0058 Score=58.86 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=66.2
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc--ccceeeccCcccc
Q 017702 65 KIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA--RKYFAAGLPGSFH 142 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~gvp~SFy 142 (367)
+|+|+|||||..++.+.... | ...|+-.|+...=-..--++.... .+ +..... +.+
T Consensus 113 ~ilDlGTGSG~iai~la~~~-----------------~---~~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~-dlf 170 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-----------------P---DAEVIAVDISPDALALARENAERNGLVR-VLVVQS-DLF 170 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-----------------c---CCeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEee-ecc
Confidence 89999999999999887433 2 346888888631110000011000 11 111121 445
Q ss_pred ccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHH-HHHhhHHHHHHHHHHhhccCceE
Q 017702 143 SRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYST-QYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 143 ~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~-Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
..+-. .+|+++| .||-+... .+....+.+. ..|... .+.. -.-...++|+..-..-|+|||.+
T Consensus 171 ~~~~~--~fDlIVs---------NPPYip~~-~~~~~~~~~~---~EP~~A-l~~g~dGl~~~~~i~~~a~~~l~~~g~l 234 (280)
T COG2890 171 EPLRG--KFDLIVS---------NPPYIPAE-DPELLPEVVR---YEPLLA-LVGGGDGLEVYRRILGEAPDILKPGGVL 234 (280)
T ss_pred cccCC--ceeEEEe---------CCCCCCCc-ccccChhhhc---cCHHHH-HccCccHHHHHHHHHHhhHHHcCCCcEE
Confidence 44444 8999999 67766554 1111111000 011000 0000 11224455888888889999999
Q ss_pred EEEee
Q 017702 222 VLILA 226 (367)
Q Consensus 222 vl~~~ 226 (367)
++...
T Consensus 235 ~le~g 239 (280)
T COG2890 235 ILEIG 239 (280)
T ss_pred EEEEC
Confidence 98885
No 126
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.44 E-value=0.0039 Score=56.83 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=66.9
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC---ccccceeeccCcc
Q 017702 64 FKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP---HARKYFAAGLPGS 140 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~---~~~~~f~~gvp~S 140 (367)
-.++|+|||.|...+.+... .| +..++--|.-.+-.....+.+. ..+-.++.+....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-----------------~P---d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-----------------NP---DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-----------------ST---TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHH-----------------CC---CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 39999999999988877521 24 4456666665433333322221 1234466667777
Q ss_pred ccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCce
Q 017702 141 FHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGL 220 (367)
Q Consensus 141 Fy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 220 (367)
+...++|++|+|-++-++.==|-.+-. .|.++. . ..||..-+.-|+|||.
T Consensus 79 ~l~~~~~~~~v~~i~i~FPDPWpK~rH-----------~krRl~----~---------------~~fl~~~~~~L~~gG~ 128 (195)
T PF02390_consen 79 LLRRLFPPGSVDRIYINFPDPWPKKRH-----------HKRRLV----N---------------PEFLELLARVLKPGGE 128 (195)
T ss_dssp HHHHHSTTTSEEEEEEES-----SGGG-----------GGGSTT----S---------------HHHHHHHHHHEEEEEE
T ss_pred HHhhcccCCchheEEEeCCCCCcccch-----------hhhhcC----C---------------chHHHHHHHHcCCCCE
Confidence 788999999999999988777743221 011111 1 1489999999999998
Q ss_pred EEEEe
Q 017702 221 MVLIL 225 (367)
Q Consensus 221 lvl~~ 225 (367)
+.+.+
T Consensus 129 l~~~T 133 (195)
T PF02390_consen 129 LYFAT 133 (195)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 86655
No 127
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.011 Score=57.29 Aligned_cols=102 Identities=20% Similarity=0.314 Sum_probs=60.8
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc---C--Cccc--cceeec
Q 017702 64 FKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS---L--PHAR--KYFAAG 136 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~---l--~~~~--~~f~~g 136 (367)
.+|||+|||-|..++.+.+. .| ..++.+.|.- +..+=.. + +... .+|.+-
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~-----------------~p---~~~vtmvDvn---~~Av~~ar~Nl~~N~~~~~~v~~s~ 216 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKK-----------------SP---QAKLTLVDVN---ARAVESARKNLAANGVENTEVWASN 216 (300)
T ss_pred CcEEEeCCCccHHHHHHHHh-----------------CC---CCeEEEEecC---HHHHHHHHHhHHHcCCCccEEEEec
Confidence 49999999999999988622 34 5577787763 2322111 1 1111 234443
Q ss_pred cCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 137 LPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 137 vp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
+ |+.+.. ++|+|+|+=-+| ..+. ....+. .+++..-++-|+
T Consensus 217 ~----~~~v~~--kfd~IisNPPfh---------~G~~-------------v~~~~~-----------~~~i~~A~~~L~ 257 (300)
T COG2813 217 L----YEPVEG--KFDLIISNPPFH---------AGKA-------------VVHSLA-----------QEIIAAAARHLK 257 (300)
T ss_pred c----cccccc--cccEEEeCCCcc---------CCcc-------------hhHHHH-----------HHHHHHHHHhhc
Confidence 3 566555 999999943322 1100 000011 147777788999
Q ss_pred cCceEEEEeec
Q 017702 217 PGGLMVLILAA 227 (367)
Q Consensus 217 pGG~lvl~~~g 227 (367)
+||.|.++.-|
T Consensus 258 ~gGeL~iVan~ 268 (300)
T COG2813 258 PGGELWIVANR 268 (300)
T ss_pred cCCEEEEEEcC
Confidence 99999888765
No 128
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.37 E-value=0.013 Score=54.14 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=15.9
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
-.+|+|+|||+|.+|.++..
T Consensus 73 g~~VLeIGtGsGY~aAlla~ 92 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAH 92 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHHH
Confidence 47999999999999998863
No 129
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.35 E-value=0.024 Score=53.93 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=65.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc---cccceeeccCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH---ARKYFAAGLPG 139 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~---~~~~f~~gvp~ 139 (367)
..+|+|+|||+|..|..+.+.+ . + .-.|+-.|.-..-...+-+++.. .+-.+..+...
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~--------~--------~---~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 132 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALM--------K--------N---EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR 132 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHc--------C--------C---CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH
Confidence 4689999999999999876433 0 0 11466777754333333333211 11112222221
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHH----HHHHHHHHhhHHHHHHHHHHhh
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVV----RAYSTQYKNDMESFLNARAEEL 215 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~~Q~~~D~~~fL~~Ra~EL 215 (367)
.+ . .+.+++|.|+. ++|+.-.. .++ ..|+.. ..-..+..+....+|+.-++-|
T Consensus 133 ~~-~--~~~~~fD~Vl~--------D~Pcsg~G----~~~--------~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l 189 (264)
T TIGR00446 133 VF-G--AAVPKFDAILL--------DAPCSGEG----VIR--------KDPSRKKNWSEEDIQEISALQKELIDSAFDAL 189 (264)
T ss_pred Hh-h--hhccCCCEEEE--------cCCCCCCc----ccc--------cChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1 12345888876 44543111 000 112221 1112233445567899999999
Q ss_pred ccCceEEEEeec
Q 017702 216 VPGGLMVLILAA 227 (367)
Q Consensus 216 ~pGG~lvl~~~g 227 (367)
+|||+||.++..
T Consensus 190 kpgG~lvYstcs 201 (264)
T TIGR00446 190 KPGGVLVYSTCS 201 (264)
T ss_pred CCCCEEEEEeCC
Confidence 999999988765
No 130
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.34 E-value=0.0035 Score=60.86 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=68.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc------cccceee
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH------ARKYFAA 135 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~------~~~~f~~ 135 (367)
..-.++|+|||-|.--+-.-..=|+ - -|-+-..|...||...-.+.+.. +...|++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~---------------~---~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~ 178 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG---------------E---YIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIA 178 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc---------------c---eEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEE
Confidence 4467888999999865543211110 0 12223344445666555555432 2345666
Q ss_pred ccCccccccC---C--CCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHH
Q 017702 136 GLPGSFHSRL---F--PRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNA 210 (367)
Q Consensus 136 gvp~SFy~~l---~--P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~ 210 (367)
|+ +|+++| + ++-++|++=|=+|+|+-=.- ..-...+|+.
T Consensus 179 ~D--c~~~~l~d~~e~~dp~fDivScQF~~HYaFet----------------------------------ee~ar~~l~N 222 (389)
T KOG1975|consen 179 AD--CFKERLMDLLEFKDPRFDIVSCQFAFHYAFET----------------------------------EESARIALRN 222 (389)
T ss_pred ec--cchhHHHHhccCCCCCcceeeeeeeEeeeecc----------------------------------HHHHHHHHHH
Confidence 65 677543 2 33449999999999982110 0122358999
Q ss_pred HHHhhccCceEEEEeec
Q 017702 211 RAEELVPGGLMVLILAA 227 (367)
Q Consensus 211 Ra~EL~pGG~lvl~~~g 227 (367)
-++-|+|||.|+-+++.
T Consensus 223 va~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 223 VAKCLKPGGVFIGTIPD 239 (389)
T ss_pred HHhhcCCCcEEEEecCc
Confidence 99999999999998874
No 131
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.34 E-value=0.072 Score=50.94 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=69.4
Q ss_pred ceEEeeecCCCCcccHHHHHH--------------HHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc
Q 017702 63 PFKIADLGCSVGPNTLLAVQN--------------IIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH 128 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~--------------ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~ 128 (367)
.-.|+|+|||+|.-|+.++.. .|.-..+.+..... .- -|.|.++|+.+--
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l---~g---~i~v~~~~me~d~---------- 212 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL---SG---RIEVIHNIMESDA---------- 212 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh---cC---ceEEEeccccccc----------
Confidence 347999999999999998863 22222333332211 11 3567777665422
Q ss_pred cccceeeccCccccccC-CCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHH--------
Q 017702 129 ARKYFAAGLPGSFHSRL-FPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQ-------- 199 (367)
Q Consensus 129 ~~~~f~~gvp~SFy~~l-~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q-------- 199 (367)
|... .+.+.+|+++| .|+-+.+.+-+. ..|+|+ .|..-
T Consensus 213 -------------~~~~~l~~~~~dllvs---------NPPYI~~dD~~~----------l~~eV~-~yEp~lALdGg~e 259 (328)
T KOG2904|consen 213 -------------SDEHPLLEGKIDLLVS---------NPPYIRKDDNRQ----------LKPEVR-LYEPKLALDGGLE 259 (328)
T ss_pred -------------ccccccccCceeEEec---------CCCcccccchhh----------cCchhe-ecCchhhhccccc
Confidence 2222 56788999999 566654432111 111111 00000
Q ss_pred HHhhHHHHHHHHHHhhccCceEEEEeecccCC
Q 017702 200 YKNDMESFLNARAEELVPGGLMVLILAAVVPD 231 (367)
Q Consensus 200 ~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n 231 (367)
.-.-+..|+..-.+-|+|||.+.++..+ ++.
T Consensus 260 G~~~~~~~~~~a~R~Lq~gg~~~le~~~-~~~ 290 (328)
T KOG2904|consen 260 GYDNLVHYWLLATRMLQPGGFEQLELVE-RKE 290 (328)
T ss_pred hhHHHHHHHHhhHhhcccCCeEEEEecc-ccc
Confidence 1123446788888999999999999998 654
No 132
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.32 E-value=0.019 Score=52.74 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=62.3
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc-C----Cccccceeecc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS-L----PHARKYFAAGL 137 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~-l----~~~~~~f~~gv 137 (367)
-.-++++|||||+|=--. +. .| --.|.+-|=-. .|...... . |..-.+|+.|.
T Consensus 77 K~~vLEvgcGtG~Nfkfy-------------~~-----~p---~~svt~lDpn~-~mee~~~ks~~E~k~~~~~~fvva~ 134 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY-------------PW-----KP---INSVTCLDPNE-KMEEIADKSAAEKKPLQVERFVVAD 134 (252)
T ss_pred ccceEEecccCCCCcccc-------------cC-----CC---CceEEEeCCcH-HHHHHHHHHHhhccCcceEEEEeec
Confidence 466899999999994321 11 23 23566666432 22322211 1 11224578887
Q ss_pred CccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 138 PGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
+.+.-+ +++.|+|.+++..+|.=. +|-.+-|+.-.+-|+|
T Consensus 135 ge~l~~--l~d~s~DtVV~TlvLCSv--------------------------------------e~~~k~L~e~~rlLRp 174 (252)
T KOG4300|consen 135 GENLPQ--LADGSYDTVVCTLVLCSV--------------------------------------EDPVKQLNEVRRLLRP 174 (252)
T ss_pred hhcCcc--cccCCeeeEEEEEEEecc--------------------------------------CCHHHHHHHHHHhcCC
Confidence 444221 289999999997766321 1333467777788899
Q ss_pred CceEEEEeec
Q 017702 218 GGLMVLILAA 227 (367)
Q Consensus 218 GG~lvl~~~g 227 (367)
||++++.=-+
T Consensus 175 gG~iifiEHv 184 (252)
T KOG4300|consen 175 GGRIIFIEHV 184 (252)
T ss_pred CcEEEEEecc
Confidence 9999888766
No 133
>PRK04457 spermidine synthase; Provisional
Probab=96.30 E-value=0.011 Score=56.37 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc---CC-c-cccceee
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS---LP-H-ARKYFAA 135 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~---l~-~-~~~~f~~ 135 (367)
+.+-+|+|+|||+|..+..+.... | ..+++.-|+-.. .-.+.+. ++ . .+--+..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-----------------p---~~~v~~VEidp~-vi~~A~~~f~~~~~~~rv~v~~ 123 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-----------------P---DTRQTAVEINPQ-VIAVARNHFELPENGERFEVIE 123 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-----------------C---CCeEEEEECCHH-HHHHHHHHcCCCCCCCceEEEE
Confidence 345789999999999887665221 2 234555555211 1111111 11 1 1223455
Q ss_pred ccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 017702 136 GLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEEL 215 (367)
Q Consensus 136 gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 215 (367)
|....|..+. ++++|+|+... ++-- ..|..+. ...|++...+-|
T Consensus 124 ~Da~~~l~~~--~~~yD~I~~D~-~~~~-~~~~~l~--------------------------------t~efl~~~~~~L 167 (262)
T PRK04457 124 ADGAEYIAVH--RHSTDVILVDG-FDGE-GIIDALC--------------------------------TQPFFDDCRNAL 167 (262)
T ss_pred CCHHHHHHhC--CCCCCEEEEeC-CCCC-CCccccC--------------------------------cHHHHHHHHHhc
Confidence 6655555433 35789998742 2211 1121110 125888889999
Q ss_pred ccCceEEEEeec
Q 017702 216 VPGGLMVLILAA 227 (367)
Q Consensus 216 ~pGG~lvl~~~g 227 (367)
+|||+++++..+
T Consensus 168 ~pgGvlvin~~~ 179 (262)
T PRK04457 168 SSDGIFVVNLWS 179 (262)
T ss_pred CCCcEEEEEcCC
Confidence 999999998876
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.23 E-value=0.007 Score=57.80 Aligned_cols=108 Identities=14% Similarity=0.104 Sum_probs=59.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC-------cccccee
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP-------HARKYFA 134 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~-------~~~~~f~ 134 (367)
++.+|+|+|||+|..+..+++.. .. + ++...|+..+-....-+.++ ..+--+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~----------------~~---~-~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~ 131 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK----------------SV---E-KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ 131 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC----------------Cc---c-eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE
Confidence 45599999999999776554211 01 1 45555654322111111111 1111234
Q ss_pred eccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHh
Q 017702 135 AGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEE 214 (367)
Q Consensus 135 ~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 214 (367)
.+.+..|..+. ++++|+|++..+-++-. +. .-| ...|++..++-
T Consensus 132 ~~D~~~~l~~~--~~~yDvIi~D~~~~~~~--~~-------------------------~l~-------~~ef~~~~~~~ 175 (270)
T TIGR00417 132 IDDGFKFLADT--ENTFDVIIVDSTDPVGP--AE-------------------------TLF-------TKEFYELLKKA 175 (270)
T ss_pred ECchHHHHHhC--CCCccEEEEeCCCCCCc--cc-------------------------chh-------HHHHHHHHHHH
Confidence 45555555443 57899999865433310 00 001 12578888899
Q ss_pred hccCceEEEEe
Q 017702 215 LVPGGLMVLIL 225 (367)
Q Consensus 215 L~pGG~lvl~~ 225 (367)
|+|||++++..
T Consensus 176 L~pgG~lv~~~ 186 (270)
T TIGR00417 176 LNEDGIFVAQS 186 (270)
T ss_pred hCCCcEEEEcC
Confidence 99999999873
No 135
>PRK03612 spermidine synthase; Provisional
Probab=96.23 E-value=0.018 Score=60.30 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=70.2
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc-----------CCcc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS-----------LPHA 129 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~-----------l~~~ 129 (367)
+++-+|+|+|||+|..+..+++. .+ .-++..-|+-..= -.+.+. +...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-----------------~~---v~~v~~VEid~~v-i~~ar~~~~l~~~~~~~~~dp 354 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-----------------PD---VEQVTLVDLDPAM-TELARTSPALRALNGGALDDP 354 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-----------------CC---cCeEEEEECCHHH-HHHHHhCCcchhhhccccCCC
Confidence 35679999999999877665521 01 0145555553211 111111 1112
Q ss_pred ccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHH
Q 017702 130 RKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLN 209 (367)
Q Consensus 130 ~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~ 209 (367)
+--+..++...|... .++++|+|++...-.|- |. ..+-|. ..|++
T Consensus 355 rv~vi~~Da~~~l~~--~~~~fDvIi~D~~~~~~---~~-----------------------~~~L~t-------~ef~~ 399 (521)
T PRK03612 355 RVTVVNDDAFNWLRK--LAEKFDVIIVDLPDPSN---PA-----------------------LGKLYS-------VEFYR 399 (521)
T ss_pred ceEEEEChHHHHHHh--CCCCCCEEEEeCCCCCC---cc-----------------------hhccch-------HHHHH
Confidence 223556665555443 24689999997433331 10 000111 24777
Q ss_pred HHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCC
Q 017702 210 ARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGV 259 (367)
Q Consensus 210 ~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~ 259 (367)
.-.+-|+|||++++.... +... -+.+.++.+.|.+.|.
T Consensus 400 ~~~~~L~pgG~lv~~~~~--~~~~----------~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 400 LLKRRLAPDGLLVVQSTS--PYFA----------PKAFWSIEATLEAAGL 437 (521)
T ss_pred HHHHhcCCCeEEEEecCC--cccc----------hHHHHHHHHHHHHcCC
Confidence 777889999999887643 2211 1344556666666665
No 136
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.15 E-value=0.026 Score=55.46 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhccCceEEEEeec
Q 017702 204 MESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 204 ~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
...+|+.-++-|+|||++++.++.
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcC
Confidence 356888888999999999998876
No 137
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.10 E-value=0.025 Score=55.61 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=17.5
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
..+|+|+|||+|.+|..+.+
T Consensus 81 g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCEEEEEeCCccHHHHHHHH
Confidence 46999999999999998864
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=96.06 E-value=0.012 Score=58.62 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=60.3
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhc---CC--------cc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKS---LP--------HA 129 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~---l~--------~~ 129 (367)
+++.+|+++|||+|.....+++ . .+ .-+|..-|+-.. --.+.+. ++ ..
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk-----------~------~~---v~~It~VEIDpe-VIelAr~~~~L~~~~~~~~~Dp 207 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLK-----------Y------ET---VLHVDLVDLDGS-MINMARNVPELVSLNKSAFFDN 207 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHh-----------c------CC---CCeEEEEeCCHH-HHHHHHhccccchhccccCCCC
Confidence 4567999999999985443431 0 11 125666666532 1222222 11 11
Q ss_pred ccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHH
Q 017702 130 RKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLN 209 (367)
Q Consensus 130 ~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~ 209 (367)
+--+..+++..|... .++++|+|++-. |.+.... ...-|. ..|++
T Consensus 208 RV~vvi~Da~~fL~~--~~~~YDVIIvDl--------~DP~~~~------------------~~~LyT-------~EFy~ 252 (374)
T PRK01581 208 RVNVHVCDAKEFLSS--PSSLYDVIIIDF--------PDPATEL------------------LSTLYT-------SELFA 252 (374)
T ss_pred ceEEEECcHHHHHHh--cCCCccEEEEcC--------CCccccc------------------hhhhhH-------HHHHH
Confidence 223455665555543 346799999852 2211100 011121 25788
Q ss_pred HHHHhhccCceEEEEee
Q 017702 210 ARAEELVPGGLMVLILA 226 (367)
Q Consensus 210 ~Ra~EL~pGG~lvl~~~ 226 (367)
...+-|+|||.|++...
T Consensus 253 ~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 253 RIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHHHhcCCCcEEEEecC
Confidence 88899999999887643
No 139
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.04 E-value=0.023 Score=50.10 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=17.6
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
.-+|+|+|||+|..|..+++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE 33 (169)
T ss_pred cCEEEEECCCccHHHHHHHh
Confidence 45899999999999998874
No 140
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.92 E-value=0.029 Score=57.61 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=17.5
Q ss_pred CceEEeeecCCCCcccHHHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~i 84 (367)
+..+|+|+|||+|+++...++..
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTT
T ss_pred cceEEEEeCCCccHHHHHHHHHH
Confidence 35899999999999998887543
No 141
>PLN02672 methionine S-methyltransferase
Probab=95.91 E-value=0.019 Score=64.46 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhccCceEEEEeec
Q 017702 205 ESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 205 ~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
++++..-.+-|+|||.|++++..
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECc
Confidence 45888888899999999999986
No 142
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.76 E-value=0.26 Score=46.05 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=80.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc-------------
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH------------- 128 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~------------- 128 (367)
+..||++.|||.|.+...+.+ . -.+|+-.|+...=-...|+....
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~------------~----------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~ 100 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS------------K----------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLY 100 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh------------C----------CCcEEEEecCHHHHHHHHHHcCCCcceeccccccee
Confidence 347999999999999998873 1 12456666654333333442210
Q ss_pred --cccceeeccCccccccCCC---CCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhh
Q 017702 129 --ARKYFAAGLPGSFHSRLFP---RSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKND 203 (367)
Q Consensus 129 --~~~~f~~gvp~SFy~~l~P---~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D 203 (367)
..-.+.. |.|++--.+ -+.+|+|+=.++|+=| | |+....|
T Consensus 101 ~~~~i~~~~---gD~f~l~~~~~~~~~fD~VyDra~~~Al---p----------------------p~~R~~Y------- 145 (226)
T PRK13256 101 KGDDIEIYV---ADIFNLPKIANNLPVFDIWYDRGAYIAL---P----------------------NDLRTNY------- 145 (226)
T ss_pred ccCceEEEE---ccCcCCCccccccCCcCeeeeehhHhcC---C----------------------HHHHHHH-------
Confidence 0011222 224431111 1456777766666653 2 3344444
Q ss_pred HHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHH
Q 017702 204 MESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAI 283 (367)
Q Consensus 204 ~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~ 283 (367)
.++-++-|+|||.+++.++- .+.. ..-|-+.-+.+|++++
T Consensus 146 ----~~~l~~lL~pgg~llll~~~-~~~~-----------------------------------~~GPPf~v~~~e~~~l 185 (226)
T PRK13256 146 ----AKMMLEVCSNNTQILLLVME-HDKK-----------------------------------SQTPPYSVTQAELIKN 185 (226)
T ss_pred ----HHHHHHHhCCCcEEEEEEEe-cCCC-----------------------------------CCCCCCcCCHHHHHHh
Confidence 45556778999999999985 3211 0224455678999999
Q ss_pred HHhCCceEEeEEEEE
Q 017702 284 IRTNGNFTIEKMEKL 298 (367)
Q Consensus 284 l~~~g~F~I~~lE~~ 298 (367)
+.+. |+|+.++..
T Consensus 186 f~~~--~~i~~l~~~ 198 (226)
T PRK13256 186 FSAK--IKFELIDSK 198 (226)
T ss_pred ccCC--ceEEEeeec
Confidence 8763 888887753
No 143
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.68 E-value=0.57 Score=45.36 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=40.2
Q ss_pred HHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCccc--CCHHHHHHHH
Q 017702 207 FLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYN--ATPKELEAII 284 (367)
Q Consensus 207 fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~--~s~eE~~~~l 284 (367)
-|+--+..+.|||.||.+.-- -. | -.+.|..+|.... + .-||.. ||..|..+++
T Consensus 231 sl~gl~~al~pgG~lIyTgQP---wH-P--------Qle~IAr~LtsHr-~-----------g~~WvMRrRsq~EmD~Lv 286 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTGQP---WH-P--------QLEMIARVLTSHR-D-----------GKAWVMRRRSQAEMDQLV 286 (311)
T ss_pred HHHHHHHHhCCCcEEEEcCCC---CC-c--------chHHHHHHHhccc-C-----------CCceEEEecCHHHHHHHH
Confidence 467778889999999887632 11 1 1256666665421 1 134554 7999999999
Q ss_pred HhCCceE
Q 017702 285 RTNGNFT 291 (367)
Q Consensus 285 ~~~g~F~ 291 (367)
+.+| |+
T Consensus 287 ~~aG-F~ 292 (311)
T PF12147_consen 287 EAAG-FE 292 (311)
T ss_pred HHcC-Cc
Confidence 9997 64
No 144
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.60 E-value=0.02 Score=51.07 Aligned_cols=110 Identities=16% Similarity=0.198 Sum_probs=55.5
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc-----cccce--
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH-----ARKYF-- 133 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~-----~~~~f-- 133 (367)
....+|+|+|||+|-.++.+.... .+ . +|+++|++. =...+=.++.. ..++-
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~----------------~~---~-~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~ 102 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF----------------GA---A-RVVLTDYNE-VLELLRRNIELNGSLLDGRVSVR 102 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-----------------T----S-EEEEEE-S--HHHHHHHHHHTT--------EEE
T ss_pred cCCceEEEECCccchhHHHHHhcc----------------CC---c-eEEEeccch-hhHHHHHHHHhccccccccccCc
Confidence 345899999999999888776331 11 2 689999875 21112222211 11111
Q ss_pred eeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 017702 134 AAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAE 213 (367)
Q Consensus 134 ~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 213 (367)
..-.+.......+.+.++|+|+.+=++.+= +.+..+++.-..
T Consensus 103 ~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--------------------------------------~~~~~L~~tl~~ 144 (173)
T PF10294_consen 103 PLDWGDELDSDLLEPHSFDVILASDVLYDE--------------------------------------ELFEPLVRTLKR 144 (173)
T ss_dssp E--TTS-HHHHHHS-SSBSEEEEES--S-G--------------------------------------GGHHHHHHHHHH
T ss_pred EEEecCcccccccccccCCEEEEecccchH--------------------------------------HHHHHHHHHHHH
Confidence 111111222333455678888776655541 234457778888
Q ss_pred hhccCceEEEEeecccC
Q 017702 214 ELVPGGLMVLILAAVVP 230 (367)
Q Consensus 214 EL~pGG~lvl~~~g~~~ 230 (367)
-|+|+|.+++...- |.
T Consensus 145 ll~~~~~vl~~~~~-R~ 160 (173)
T PF10294_consen 145 LLKPNGKVLLAYKR-RR 160 (173)
T ss_dssp HBTT-TTEEEEEE--S-
T ss_pred HhCCCCEEEEEeCE-ec
Confidence 99999996666655 53
No 145
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.57 E-value=0.045 Score=53.13 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.4
Q ss_pred eEEeeecCCCCcccHHHH
Q 017702 64 FKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~ 81 (367)
-+|+|+|||||.+++...
T Consensus 163 ~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp SEEEEES-TTSHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHH
Confidence 599999999999999776
No 146
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.56 E-value=0.043 Score=54.00 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=34.5
Q ss_pred cccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceE
Q 017702 142 HSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
.+-.+|...+|+++|=|-=.||- ++.=+...|-+|-+=|+|||.+
T Consensus 119 Edi~LP~eKVDiIvSEWMGy~Ll-----------------------------------~EsMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499|consen 119 EDIELPVEKVDIIVSEWMGYFLL-----------------------------------YESMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred EEEecCccceeEEeehhhhHHHH-----------------------------------HhhhhhhhhhhhhhccCCCceE
Confidence 44456778999999976666654 2234556899999999999987
Q ss_pred E
Q 017702 222 V 222 (367)
Q Consensus 222 v 222 (367)
+
T Consensus 164 ~ 164 (346)
T KOG1499|consen 164 Y 164 (346)
T ss_pred c
Confidence 4
No 147
>PLN02366 spermidine synthase
Probab=95.48 E-value=0.053 Score=53.00 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=63.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCcc--chHH-Hhhc----CCccccce
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDN--DFNT-LFKS----LPHARKYF 133 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~N--DFn~-lf~~----l~~~~~~f 133 (367)
+++-+|+++|||.|.....+++. ++ .-+|..-|+... ++.. .|.. +...+--+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-----------------~~---v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~v 149 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-----------------SS---VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNL 149 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-----------------CC---CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEE
Confidence 45689999999999966555311 11 114555565531 1111 1211 11223446
Q ss_pred eeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 017702 134 AAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAE 213 (367)
Q Consensus 134 ~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 213 (367)
..+++..|.+.. |++++|+|++-.+-+|. |. ..-|. ..|++...+
T Consensus 150 i~~Da~~~l~~~-~~~~yDvIi~D~~dp~~---~~------------------------~~L~t-------~ef~~~~~~ 194 (308)
T PLN02366 150 HIGDGVEFLKNA-PEGTYDAIIVDSSDPVG---PA------------------------QELFE-------KPFFESVAR 194 (308)
T ss_pred EEChHHHHHhhc-cCCCCCEEEEcCCCCCC---ch------------------------hhhhH-------HHHHHHHHH
Confidence 677777776644 56789999985444331 10 00111 258888889
Q ss_pred hhccCceEEEEe
Q 017702 214 ELVPGGLMVLIL 225 (367)
Q Consensus 214 EL~pGG~lvl~~ 225 (367)
-|+|||.|+...
T Consensus 195 ~L~pgGvlv~q~ 206 (308)
T PLN02366 195 ALRPGGVVCTQA 206 (308)
T ss_pred hcCCCcEEEECc
Confidence 999999987653
No 148
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.26 E-value=0.067 Score=49.94 Aligned_cols=66 Identities=24% Similarity=0.478 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHH
Q 017702 203 DMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEA 282 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~ 282 (367)
++..++-.-+.-|+|||.|.++.=. -++.. +. - +.. .-=|..+..=+++
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~-l~~~~-------~f--~-l~p--------------------s~RyAH~~~YVr~ 251 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVET-LPDDG-------GF--V-LGP--------------------SQRYAHSESYVRA 251 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecc-cCCCC-------Ce--e-cch--------------------hhhhccchHHHHH
Confidence 4556888899999999999888743 22210 00 0 000 0113456667788
Q ss_pred HHHhCCceEEeEEEEEec
Q 017702 283 IIRTNGNFTIEKMEKLSQ 300 (367)
Q Consensus 283 ~l~~~g~F~I~~lE~~~~ 300 (367)
.++..| |++..++....
T Consensus 252 ~l~~~G-l~~i~~~~tti 268 (287)
T COG4976 252 LLAASG-LEVIAIEDTTI 268 (287)
T ss_pred HHHhcC-ceEEEeecccc
Confidence 888887 99988887643
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.22 E-value=0.13 Score=48.08 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=42.2
Q ss_pred eeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 017702 134 AAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAE 213 (367)
Q Consensus 134 ~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 213 (367)
+.+..--+...++|++|+|=++-++.==|-.+-. +|.++.. ..||+.-++
T Consensus 103 ~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~~-------------------~~fl~~~a~ 152 (227)
T COG0220 103 LCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRH-----------HKRRLTQ-------------------PEFLKLYAR 152 (227)
T ss_pred EcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccc-----------cccccCC-------------------HHHHHHHHH
Confidence 3344444567777888999999988877833322 1222221 148999999
Q ss_pred hhccCceEEEEe
Q 017702 214 ELVPGGLMVLIL 225 (367)
Q Consensus 214 EL~pGG~lvl~~ 225 (367)
-|+|||.+.+.+
T Consensus 153 ~Lk~gG~l~~aT 164 (227)
T COG0220 153 KLKPGGVLHFAT 164 (227)
T ss_pred HccCCCEEEEEe
Confidence 999999987766
No 150
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.15 E-value=0.063 Score=56.01 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCccee
Q 017702 28 STYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEF 107 (367)
Q Consensus 28 S~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~ 107 (367)
...|++.++...|.+.=..++ .+ ..+.-.++|+|||.|..++.+... .| +.
T Consensus 322 ~~~q~~~~e~~~p~~~i~~ek-----lf----~~~~p~~lEIG~G~G~~~~~~A~~-----------------~p---~~ 372 (506)
T PRK01544 322 SGVQQNLLDNELPKYLFSKEK-----LV----NEKRKVFLEIGFGMGEHFINQAKM-----------------NP---DA 372 (506)
T ss_pred CHHHHHHHHhhhhhhCCCHHH-----hC----CCCCceEEEECCCchHHHHHHHHh-----------------CC---CC
Confidence 347888888888876421111 11 245688999999999998877631 12 22
Q ss_pred EEEEcCCCccchHHHhhcCCc--cccceeeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccc
Q 017702 108 QVFLNDHSDNDFNTLFKSLPH--ARKYFAAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQC 185 (367)
Q Consensus 108 ~v~~nDlp~NDFn~lf~~l~~--~~~~f~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~ 185 (367)
.++=-|.-.+-...+.+.... -.++.+......+....+|++|+|-++-++.=-|-.+-. .|.++.
T Consensus 373 ~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh-----------~krRl~- 440 (506)
T PRK01544 373 LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQ-----------KKKRIF- 440 (506)
T ss_pred CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCC-----------cccccc-
Confidence 233333332222222222111 112222211233456778999999999998888833221 122221
Q ss_pred cCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEe
Q 017702 186 SESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLIL 225 (367)
Q Consensus 186 ~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 225 (367)
. ..||..-+.-|+|||.+.+.+
T Consensus 441 ---~---------------~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 441 ---N---------------KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ---C---------------HHHHHHHHHhcCCCCEEEEEc
Confidence 1 148888899999999987655
No 151
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.00 E-value=0.17 Score=48.95 Aligned_cols=43 Identities=12% Similarity=0.280 Sum_probs=26.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSD 116 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~ 116 (367)
+++||..-|||||-=.-.+.-.+.+.+ ... .. .++|+-.|+..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~----~~~-----~~---~~~I~atDIs~ 157 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTL----GTA-----PG---RWKVFASDIDT 157 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhh----ccc-----CC---CcEEEEEECCH
Confidence 469999999999965444432232222 110 11 57899999965
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=94.95 E-value=0.1 Score=49.06 Aligned_cols=72 Identities=7% Similarity=0.078 Sum_probs=40.8
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCcccc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSFH 142 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SFy 142 (367)
..+|+|+|||+|..++.+...+. . .+ ..+|+.-|+-.+-....-+.++. .-+..+ .|.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~--------~------~~---~~~V~aVEID~~Al~~Ar~n~~~--~~~~~~---D~~ 107 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMM--------Y------AK---PREIVCVELNHTYYKLGKRIVPE--ATWINA---DAL 107 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcc--------c------CC---CcEEEEEECCHHHHHHHHhhccC--CEEEEc---chh
Confidence 46999999999999887764331 0 11 23566667754433333223221 223332 343
Q ss_pred ccCCCCCceeEEEec
Q 017702 143 SRLFPRSSIHFVHTS 157 (367)
Q Consensus 143 ~~l~P~~svd~~~S~ 157 (367)
... +++++|+|+|+
T Consensus 108 ~~~-~~~~FDlIIsN 121 (241)
T PHA03412 108 TTE-FDTLFDMAISN 121 (241)
T ss_pred ccc-ccCCccEEEEC
Confidence 322 35689999993
No 153
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.91 E-value=0.12 Score=47.32 Aligned_cols=115 Identities=23% Similarity=0.383 Sum_probs=59.6
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHh------------hcCCc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLF------------KSLPH 128 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf------------~~l~~ 128 (367)
.+++||...|||+|-=.-.+.-.+-+.. .... .- .++++-+|+.. ..|- +.+|.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~----~~~~----~~---~~~I~atDi~~---~~L~~Ar~G~Y~~~~~~~~~~ 95 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELL----PGAL----GW---DFRILATDISP---SALEKARAGIYPERSLRGLPP 95 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-----S-T----T----SEEEEEEES-H---HHHHHHHHTEEEGGGGTTS-H
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHh----cccC----CC---ceEEEEEECCH---HHHHHHHhCCCCHHHHhhhHH
Confidence 4689999999999965544432222211 1110 11 57899999963 2222 22222
Q ss_pred c--ccceeeccCcccc-----------------ccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCC
Q 017702 129 A--RKYFAAGLPGSFH-----------------SRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESN 189 (367)
Q Consensus 129 ~--~~~f~~gvp~SFy-----------------~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~ 189 (367)
. ..||....++.|- +.-.|.+.+|+|+|-+.|-+++..
T Consensus 96 ~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~----------------------- 152 (196)
T PF01739_consen 96 AYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE----------------------- 152 (196)
T ss_dssp HHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HH-----------------------
T ss_pred HHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHH-----------------------
Confidence 1 3566444443332 223466889999998877775521
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEe
Q 017702 190 IEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLIL 225 (367)
Q Consensus 190 ~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 225 (367)
.-.+.++.-++.|+|||.|++.-
T Consensus 153 -------------~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 153 -------------TQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -------------HHHHHHHHHGGGEEEEEEEEE-T
T ss_pred -------------HHHHHHHHHHHHcCCCCEEEEec
Confidence 22357888889999999987643
No 154
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=94.84 E-value=0.7 Score=42.88 Aligned_cols=145 Identities=22% Similarity=0.302 Sum_probs=80.9
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc--c----ccc--
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH--A----RKY-- 132 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~--~----~~~-- 132 (367)
...-||++-|||.|.....+.+. -.+|+--|+...=-...|+.-.. . ...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~----------------------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ----------------------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT----------------------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCCCeEEEeCCCChHHHHHHHHC----------------------CCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence 34579999999999998777620 13566666654333333332210 0 000
Q ss_pred ----eeeccCccccccCCCC--CceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHH
Q 017702 133 ----FAAGLPGSFHSRLFPR--SSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMES 206 (367)
Q Consensus 133 ----f~~gvp~SFy~~l~P~--~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~ 206 (367)
-+.-+-|.|++ +-|. +++|+|+=-++|+=| |+ +..+ +
T Consensus 94 ~~~~~i~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp----------------------~~R~-----------~ 136 (218)
T PF05724_consen 94 YQAGRITIYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---PP----------------------EMRE-----------R 136 (218)
T ss_dssp ETTSSEEEEES-TTT-GGGSCHHSEEEEEECSSTTTS----G----------------------GGHH-----------H
T ss_pred ecCCceEEEEccccc-CChhhcCCceEEEEecccccC---CH----------------------HHHH-----------H
Confidence 01112234665 2222 358999988888763 32 2233 3
Q ss_pred HHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHh
Q 017702 207 FLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRT 286 (367)
Q Consensus 207 fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~ 286 (367)
+.++-++-|+|||++++.++- .+... ..-|-|.-+.+|+++++..
T Consensus 137 Ya~~l~~ll~p~g~~lLi~l~-~~~~~----------------------------------~~GPPf~v~~~ev~~l~~~ 181 (218)
T PF05724_consen 137 YAQQLASLLKPGGRGLLITLE-YPQGE----------------------------------MEGPPFSVTEEEVRELFGP 181 (218)
T ss_dssp HHHHHHHCEEEEEEEEEEEEE-S-CSC----------------------------------SSSSS----HHHHHHHHTT
T ss_pred HHHHHHHHhCCCCcEEEEEEE-cCCcC----------------------------------CCCcCCCCCHHHHHHHhcC
Confidence 455667889999996555554 22211 1236666789999999984
Q ss_pred CCceEEeEEEEEecC
Q 017702 287 NGNFTIEKMEKLSQP 301 (367)
Q Consensus 287 ~g~F~I~~lE~~~~p 301 (367)
.|+|+.++..+..
T Consensus 182 --~f~i~~l~~~~~~ 194 (218)
T PF05724_consen 182 --GFEIEELEEEDSI 194 (218)
T ss_dssp --TEEEEEEEEEE-T
T ss_pred --CcEEEEEeccccc
Confidence 4999999986543
No 155
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.59 E-value=0.045 Score=51.23 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=18.8
Q ss_pred CCceEEeeecCCCCcccHHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQN 83 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ 83 (367)
.++-+|+|+|||+|.-++.+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~ 89 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALA 89 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHh
Confidence 34679999999999999877643
No 156
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.54 E-value=0.22 Score=54.13 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=21.2
Q ss_pred HHhhHHHHHHHHHHhhccCceEEEEeec
Q 017702 200 YKNDMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 200 ~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
..+|+..++..-.+-|+|||.++++...
T Consensus 631 ~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 631 VQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3456667888878899999998876543
No 157
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.47 E-value=0.061 Score=51.16 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=56.4
Q ss_pred CceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecc
Q 017702 149 SSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILAAV 228 (367)
Q Consensus 149 ~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 228 (367)
...|.+.|++||.=.++-++ .+++-|++-+.-|||||.|++....
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~----------------------------------~y~~al~ni~~lLkpGG~Lil~~~l- 201 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLD----------------------------------EYRRALRNISSLLKPGGHLILAGVL- 201 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHH----------------------------------HHHHHHHHHHTTEEEEEEEEEEEES-
T ss_pred cchhhhhhhHHHHHHcCCHH----------------------------------HHHHHHHHHHHHcCCCcEEEEEEEc-
Confidence 46999999999988664321 3344677788999999999998876
Q ss_pred cCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCceEEeEEE
Q 017702 229 VPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNFTIEKME 296 (367)
Q Consensus 229 ~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F~I~~lE 296 (367)
..+... -| .-.+|...-+.+.++++|+++| |+|+..+
T Consensus 202 ~~t~Y~----------------------vG--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 202 GSTYYM----------------------VG--------GHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp S-SEEE----------------------ET--------TEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred CceeEE----------------------EC--------CEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 322111 01 1136777889999999999997 9999888
No 158
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.25 E-value=0.67 Score=44.43 Aligned_cols=116 Identities=24% Similarity=0.403 Sum_probs=70.7
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchH----------HHhhcCCcc--
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFN----------TLFKSLPHA-- 129 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn----------~lf~~l~~~-- 129 (367)
+++||--.|||||-=.-.++-.+.+.... . ... .++++-.|+...--. ..++.++..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~----~----~~~---~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~ 164 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK----L----AGF---RVKILATDIDLSVLEKARAGIYPSRELLRGLPPELL 164 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc----c----cCC---ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHH
Confidence 58999999999997666555444333321 0 123 689999999631111 122223322
Q ss_pred ccceeeccCcccc--------------ccCC---CCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHH
Q 017702 130 RKYFAAGLPGSFH--------------SRLF---PRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEV 192 (367)
Q Consensus 130 ~~~f~~gvp~SFy--------------~~l~---P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~ 192 (367)
++||.-+.+|+|- +-+. ..+-+|+|||=+.|=++++.
T Consensus 165 ~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~-------------------------- 218 (268)
T COG1352 165 RRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEE-------------------------- 218 (268)
T ss_pred hhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHH--------------------------
Confidence 4788877777543 1111 33568888886666665531
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhccCceEEEE
Q 017702 193 VRAYSTQYKNDMESFLNARAEELVPGGLMVLI 224 (367)
Q Consensus 193 ~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 224 (367)
.-.+.++.-+.-|+|||.|++-
T Consensus 219 ----------~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 219 ----------TQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ----------HHHHHHHHHHHHhCCCCEEEEc
Confidence 1225677888999999998663
No 159
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.21 E-value=0.14 Score=49.17 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=41.9
Q ss_pred cccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceE
Q 017702 142 HSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
.+-.+++.++|.+.|.+.+||||.-- -=.+.++.-.+.|+|||.+
T Consensus 95 l~~p~~~~s~d~~lsiavihhlsT~~-----------------------------------RR~~~l~e~~r~lrpgg~~ 139 (293)
T KOG1331|consen 95 LKLPFREESFDAALSIAVIHHLSTRE-----------------------------------RRERALEELLRVLRPGGNA 139 (293)
T ss_pred hcCCCCCCccccchhhhhhhhhhhHH-----------------------------------HHHHHHHHHHHHhcCCCce
Confidence 45567889999999999999998421 1113567777899999999
Q ss_pred EEEeecccCCC
Q 017702 222 VLILAAVVPDG 232 (367)
Q Consensus 222 vl~~~g~~~n~ 232 (367)
.+...+ ....
T Consensus 140 lvyvwa-~~q~ 149 (293)
T KOG1331|consen 140 LVYVWA-LEQH 149 (293)
T ss_pred EEEEeh-hhcc
Confidence 998887 5433
No 160
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.12 E-value=0.3 Score=44.72 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=15.8
Q ss_pred eEEeeecCCCCcccHHHH
Q 017702 64 FKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~ 81 (367)
.+|+|+|||+|..++.++
T Consensus 55 ~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 55 ARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CEEEEcCCCccHHHHHHH
Confidence 589999999999998654
No 161
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.32 Score=46.00 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=33.0
Q ss_pred HHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhh
Q 017702 206 SFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVD 266 (367)
Q Consensus 206 ~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d 266 (367)
+.|.+-++.|+|||.+++-.+. .+.+...+..|.+.|.+..+.++
T Consensus 176 ~~le~~~~~Lkpgg~~~~y~P~----------------veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 176 NVLEHVSDALKPGGVVVVYSPT----------------VEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred HHHHHHHHHhCCCcEEEEEcCC----------------HHHHHHHHHHHHhcCccchhhhe
Confidence 4789999999999998887765 25566666667677777654443
No 162
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=93.94 E-value=0.56 Score=47.45 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHHHHhhccCceEEEEeec
Q 017702 199 QYKNDMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 199 Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
.+.+++..++..-.+-|+|||.+++....
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 34557777888888999999999876643
No 163
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.83 E-value=2.7 Score=38.10 Aligned_cols=126 Identities=13% Similarity=0.193 Sum_probs=65.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSF 141 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SF 141 (367)
.+.-++|+|||||--|-.+.+.+. | ...++-.|+-.---..-..+... +..-+--|-.++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~----------------~---~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl 102 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIG----------------P---QALYLATDINPEALEATLETARC-NRVHIDVVRTDL 102 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcC----------------C---CceEEEecCCHHHHHHHHHHHHh-cCCccceeehhH
Confidence 468899999999999888876663 2 23445556531111111111000 011111122334
Q ss_pred cccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHH--HHHHhhHHHHHHHHHHhhccCc
Q 017702 142 HSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYS--TQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~--~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
..-|-+ +++|+.+= .|+-+.....+. - ..-...+|+ +-...=..+||..--.-|.|-|
T Consensus 103 ~~~l~~-~~VDvLvf---------NPPYVpt~~~~i------~----~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G 162 (209)
T KOG3191|consen 103 LSGLRN-ESVDVLVF---------NPPYVPTSDEEI------G----DEGIASAWAGGKDGREVTDRLLPQVPDILSPRG 162 (209)
T ss_pred Hhhhcc-CCccEEEE---------CCCcCcCCcccc------h----hHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc
Confidence 444444 78887665 344333322211 0 111223444 3333445678877778888999
Q ss_pred eEEEEeec
Q 017702 220 LMVLILAA 227 (367)
Q Consensus 220 ~lvl~~~g 227 (367)
.+.+...-
T Consensus 163 v~Ylv~~~ 170 (209)
T KOG3191|consen 163 VFYLVALR 170 (209)
T ss_pred eEEeeehh
Confidence 98888864
No 164
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=93.69 E-value=0.48 Score=46.67 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHhhccCceEEEEee
Q 017702 202 NDMESFLNARAEELVPGGLMVLILA 226 (367)
Q Consensus 202 ~D~~~fL~~Ra~EL~pGG~lvl~~~ 226 (367)
+=++.+|.+| +-|+|.|.|+=+..
T Consensus 260 RMLEsYl~Ar-k~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 260 RMLESYLHAR-KWLKPNGKMFPTVG 283 (517)
T ss_pred HHHHHHHHHH-hhcCCCCcccCccc
Confidence 3566789999 99999999965553
No 165
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.11 E-value=0.43 Score=42.31 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=26.9
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCcc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDN 117 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~N 117 (367)
+..+|+|+|||.|.-|..+++.. .+ .-.|+--|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~----------------~~---~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG----------------GP---AGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST----------------TT---EEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecc----------------cc---cceEEEEecccc
Confidence 57999999999999998887333 11 346888888754
No 166
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.88 E-value=0.65 Score=45.64 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=32.2
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP 127 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~ 127 (367)
...+|+|+|||+|.-|..+++.+.. . .. .+.++=-|+...--....+.|.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~----~---------~~---~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALER----Q---------KK---SVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHh----c---------CC---CceEEEEECCHHHHHHHHHhhh
Confidence 3468999999999999999876621 0 11 3467777776533333444444
No 167
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=92.40 E-value=1.8 Score=39.25 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.4
Q ss_pred eEEeeecCCCCcccHHHH
Q 017702 64 FKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~ 81 (367)
-||+|+|||-|..-..+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred cceeeccCCchHHHHHHH
Confidence 399999999997665554
No 168
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=92.29 E-value=1.3 Score=45.31 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.2
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
..+|+|+|||+|..|+.+..
T Consensus 298 ~~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CCEEEEEeccCCHHHHHHHH
Confidence 36899999999999998764
No 169
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.24 E-value=0.19 Score=41.59 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=34.7
Q ss_pred eeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEEEee
Q 017702 151 IHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVLILA 226 (367)
Q Consensus 151 vd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 226 (367)
+|+|.|.+...| ||. .....-+.+|++.-+.-|+|||+|+++--
T Consensus 2 yDvilclSVtkW--------------------IHL------------n~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------------IHL------------NWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp EEEEEEES-HHH--------------------HHH------------HHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred ccEEEEEEeeEE--------------------EEe------------cCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 799999999999 443 33445788899999999999999999875
No 170
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.52 E-value=7.5 Score=37.26 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHH
Q 017702 205 ESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAII 284 (367)
Q Consensus 205 ~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l 284 (367)
...++.-.+.|.||.+|+++-.. .+. .+ ...+.+...+ ..-..|.+.||.+|+.+.+
T Consensus 170 ~~iv~~l~d~lapGS~L~ish~t-~d~-~p-------~~~~~~~~~~--------------~~~~~~~~~Rs~~ei~~~f 226 (267)
T PF04672_consen 170 AGIVARLRDALAPGSYLAISHAT-DDG-AP-------ERAEALEAVY--------------AQAGSPGRPRSREEIAAFF 226 (267)
T ss_dssp HHHHHHHHCCS-TT-EEEEEEEB--TT-SH-------HHHHHHHHHH--------------HHCCS----B-HHHHHHCC
T ss_pred HHHHHHHHHhCCCCceEEEEecC-CCC-CH-------HHHHHHHHHH--------------HcCCCCceecCHHHHHHHc
Confidence 34666667899999999999997 332 11 0012222222 2235689999999999988
Q ss_pred HhCCceEEeE
Q 017702 285 RTNGNFTIEK 294 (367)
Q Consensus 285 ~~~g~F~I~~ 294 (367)
. +|++..
T Consensus 227 ~---g~elve 233 (267)
T PF04672_consen 227 D---GLELVE 233 (267)
T ss_dssp T---TSEE-T
T ss_pred C---CCccCC
Confidence 5 377753
No 171
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=91.37 E-value=1.2 Score=41.02 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHhhccCceEEE
Q 017702 202 NDMESFLNARAEELVPGGLMVL 223 (367)
Q Consensus 202 ~D~~~fL~~Ra~EL~pGG~lvl 223 (367)
.|+..-|..+..+||+|-++|.
T Consensus 135 ~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 135 PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEE
Confidence 4666778888999999977653
No 172
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=90.49 E-value=5.7 Score=36.91 Aligned_cols=93 Identities=22% Similarity=0.329 Sum_probs=61.7
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeeccCccc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGLPGSF 141 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gvp~SF 141 (367)
..++++|+||=+..|...- .+ .|.|.--||-+.+ .. + .--.|
T Consensus 51 ~~lrlLEVGals~~N~~s~--------------------~~---~fdvt~IDLns~~-~~----I----------~qqDF 92 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST--------------------SG---WFDVTRIDLNSQH-PG----I----------LQQDF 92 (219)
T ss_pred ccceEEeecccCCCCcccc--------------------cC---ceeeEEeecCCCC-CC----c----------eeecc
Confidence 4699999999888877643 12 3556666775322 00 0 01136
Q ss_pred cccCCC---CCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 142 HSRLFP---RSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 142 y~~l~P---~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
.++-+| .+.+|+|.+|-.|.+ +|++.. =-.-|++-.+-|+|+
T Consensus 93 m~rplp~~~~e~FdvIs~SLVLNf---VP~p~~--------------------------------RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 93 MERPLPKNESEKFDVISLSLVLNF---VPDPKQ--------------------------------RGEMLRRAHKFLKPP 137 (219)
T ss_pred ccCCCCCCcccceeEEEEEEEEee---CCCHHH--------------------------------HHHHHHHHHHHhCCC
Confidence 666554 689999999999988 664211 113566677788999
Q ss_pred ce-----EEEEeec
Q 017702 219 GL-----MVLILAA 227 (367)
Q Consensus 219 G~-----lvl~~~g 227 (367)
|. |+++++-
T Consensus 138 g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 138 GLSLFPSLFLVLPL 151 (219)
T ss_pred CccCcceEEEEeCc
Confidence 99 9888874
No 173
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=90.43 E-value=0.12 Score=49.33 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=17.8
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
..+|+|+|||+|..|..+.+
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~ 62 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLE 62 (272)
T ss_pred cCeEEEeCCCccHHHHHHHH
Confidence 46899999999999998875
No 174
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=90.34 E-value=2.2 Score=44.17 Aligned_cols=125 Identities=12% Similarity=0.172 Sum_probs=70.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc--cc-ceeeccC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA--RK-YFAAGLP 138 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~--~~-~f~~gvp 138 (367)
...+|+|++||.|.-|..+.+.+ . . .=.|+-||...+-...|-.++... .+ ......+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l--------~--------~---~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~ 173 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALM--------N--------N---QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG 173 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--------C--------C---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch
Confidence 34799999999999999886433 1 1 115778887765555555554321 12 2222333
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHH----HHHHHHHHhhHHHHHHHHHHh
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVV----RAYSTQYKNDMESFLNARAEE 214 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~~Q~~~D~~~fL~~Ra~E 214 (367)
..+ ...+ ++++|.|.- ++||.-... +.| .|+.. ....++..+--..+|..-++-
T Consensus 174 ~~~-~~~~-~~~fD~ILv--------DaPCSG~G~----~rk--------~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~ 231 (470)
T PRK11933 174 RVF-GAAL-PETFDAILL--------DAPCSGEGT----VRK--------DPDALKNWSPESNLEIAATQRELIESAFHA 231 (470)
T ss_pred hhh-hhhc-hhhcCeEEE--------cCCCCCCcc----ccc--------CHHHhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1122 245777764 566643221 111 12221 112223333445789999999
Q ss_pred hccCceEEEEeec
Q 017702 215 LVPGGLMVLILAA 227 (367)
Q Consensus 215 L~pGG~lvl~~~g 227 (367)
|+|||+||-++..
T Consensus 232 LkpGG~LVYSTCT 244 (470)
T PRK11933 232 LKPGGTLVYSTCT 244 (470)
T ss_pred cCCCcEEEEECCC
Confidence 9999999888875
No 175
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=89.68 E-value=3.5 Score=43.10 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.6
Q ss_pred CceEEeeecCCCCcccHHHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~i 84 (367)
...+|+|.|||+|...+.++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~ 53 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKN 53 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHH
Confidence 46899999999999988887654
No 176
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=89.18 E-value=2.3 Score=40.52 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=18.4
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
+..+++|+|.|+|.-|..+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~ 114 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP 114 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh
Confidence 578999999999999998853
No 177
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=88.89 E-value=0.62 Score=44.13 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=17.9
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
.-+|+|+|||+|..|..+.+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH
Confidence 47899999999999998875
No 178
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=88.69 E-value=22 Score=34.19 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=63.8
Q ss_pred eeccCccccccCCCC---CceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHH
Q 017702 134 AAGLPGSFHSRLFPR---SSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNA 210 (367)
Q Consensus 134 ~~gvp~SFy~~l~P~---~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~ 210 (367)
.+.+.|+|-+---++ ++.|.|++.+=+ .. ++++-.+|..
T Consensus 146 ~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI---DT-----------------------------------A~Ni~~Yi~t 187 (270)
T PF07942_consen 146 LSMCAGDFLEVYGPDENKGSFDVVVTCFFI---DT-----------------------------------AENIIEYIET 187 (270)
T ss_pred eeEecCccEEecCCcccCCcccEEEEEEEe---ec-----------------------------------hHHHHHHHHH
Confidence 445556777665555 789988885221 11 2356678999
Q ss_pred HHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCCce
Q 017702 211 RAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNGNF 290 (367)
Q Consensus 211 Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g~F 290 (367)
..+-||||| +...+|+.- .+. + ++ + +. +-...-.|.||++.+++.-| |
T Consensus 188 I~~lLkpgG--~WIN~GPLl-----yh~------~-------~~---~-~~-------~~~sveLs~eEi~~l~~~~G-F 235 (270)
T PF07942_consen 188 IEHLLKPGG--YWINFGPLL-----YHF------E-------PM---S-IP-------NEMSVELSLEEIKELIEKLG-F 235 (270)
T ss_pred HHHHhccCC--EEEecCCcc-----ccC------C-------CC---C-CC-------CCcccCCCHHHHHHHHHHCC-C
Confidence 999999999 345555111 110 0 00 0 00 00013678999999999987 9
Q ss_pred EEeEEEE-EecCCCCCCHHHHHH
Q 017702 291 TIEKMEK-LSQPRRRITANEYAS 312 (367)
Q Consensus 291 ~I~~lE~-~~~p~~~~~~~~v~~ 312 (367)
++++-+. .... .-.+++.+..
T Consensus 236 ~~~~~~~~i~~~-Y~~d~~Sm~q 257 (270)
T PF07942_consen 236 EIEKEESSILSG-YTTDPESMMQ 257 (270)
T ss_pred EEEEEEEeeecC-CCCCHHHHhh
Confidence 9987666 3332 3345555543
No 179
>PLN02823 spermine synthase
Probab=88.62 E-value=1.2 Score=44.05 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=16.6
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~ 81 (367)
+.+-+|+.+|+|.|.....++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 356799999999997776554
No 180
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=88.30 E-value=0.23 Score=45.73 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=41.9
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHH----hhcCCc-cccceeec
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTL----FKSLPH-ARKYFAAG 136 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~l----f~~l~~-~~~~f~~g 136 (367)
++-+|+++||++|.-|+.++..+ + + .-+|+--|.-. +...+ |+...- .+--+..|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l--------~--------~---~g~i~tiE~~~-~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL--------P--------E---DGKITTIEIDP-ERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS--------T--------T---TSEEEEEESSH-HHHHHHHHHHHHTTGGGGEEEEES
T ss_pred CCceEEEeccccccHHHHHHHhh--------c--------c---cceEEEecCcH-HHHHHHHHHHHhcCCCCcEEEEEe
Confidence 45799999999999999988543 1 1 11344434321 11121 111111 12235666
Q ss_pred cCccccccCCCC---CceeEEEe
Q 017702 137 LPGSFHSRLFPR---SSIHFVHT 156 (367)
Q Consensus 137 vp~SFy~~l~P~---~svd~~~S 156 (367)
....+..++.+. +.+||+|-
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFi 127 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFI 127 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEE
T ss_pred ccHhhHHHHHhccCCCceeEEEE
Confidence 666666776654 47999987
No 181
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=88.28 E-value=0.71 Score=39.49 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.3
Q ss_pred CCCceEEeeecCCCCcccHHHHH
Q 017702 60 TLKPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~~ 82 (367)
.....+|+|+|||.|..|+.+..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 35689999999999999999875
No 182
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=88.23 E-value=1.2 Score=42.20 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=19.2
Q ss_pred CCceEEeeecCCCCcccHHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQN 83 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ 83 (367)
.++-+|+++|+++|.-|+.++..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~a 100 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALA 100 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhh
Confidence 35679999999999999987643
No 183
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.20 E-value=0.86 Score=41.44 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.5
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
..-+|+|+|||||..++...-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~ 65 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL 65 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh
Confidence 346799999999999997754
No 184
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=88.15 E-value=4.5 Score=38.32 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=16.6
Q ss_pred ceEEeeecCCCCcccHHHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~i 84 (367)
--+|+|-|.|+|..|..+...+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHh
Confidence 4899999999999999998654
No 185
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=87.80 E-value=1.6 Score=41.03 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=18.4
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
+.-+|+|+|||+|..|..+.+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH
Confidence 457999999999999998875
No 186
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=87.70 E-value=1.2 Score=41.39 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~i 84 (367)
.++-+|+++|.+.|.-|+.+...+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l 81 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALAL 81 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhC
Confidence 467899999999999999988555
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=87.22 E-value=1.7 Score=41.40 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=41.5
Q ss_pred ceEEeeecCCCCcccHHHHH------------HHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHh
Q 017702 63 PFKIADLGCSVGPNTLLAVQ------------NIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLF 123 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~------------~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf 123 (367)
.-+|+|+|+|.|..|..+++ .++..++++... .. .++|+..|--.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~------~~---n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP------YD---NLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc------cc---ceEEEeCchhcCcchhhc
Confidence 58999999999999999998 566666665432 23 689999999888888764
No 188
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=87.14 E-value=2.2 Score=43.05 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=32.9
Q ss_pred CCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHH
Q 017702 20 DAYSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 20 g~~sY~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~ 82 (367)
++-.|+-|...-+.+...+...+. . ..+..+|+|++||+|..++.+..
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~----~-----------~~~~~~vLDl~aGsG~~~l~~a~ 77 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFG----P-----------KLPRESVLDALSASGIRGIRYAL 77 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHH----h-----------hcCCCEEEECCCcccHHHHHHHH
Confidence 446899887777765554444332 1 11246899999999999998863
No 189
>PLN02476 O-methyltransferase
Probab=86.91 E-value=0.85 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=19.4
Q ss_pred CCceEEeeecCCCCcccHHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQN 83 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ 83 (367)
.++-+|+|+||++|.-|+.+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~a 139 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALV 139 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHh
Confidence 35689999999999999988743
No 190
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=86.82 E-value=0.79 Score=44.50 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.4
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
..-+|+|+|||+|..|..+++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~ 56 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQ 56 (294)
T ss_pred CcCEEEEecCchHHHHHHHHH
Confidence 346899999999999998876
No 191
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=86.54 E-value=1.2 Score=43.95 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=15.7
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~ 81 (367)
...+|+|+|||+|....++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa 133 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG 133 (321)
T ss_pred CCceEEEecCCccHHHHHHH
Confidence 56899999999996655553
No 192
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=86.39 E-value=5.9 Score=37.93 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=14.5
Q ss_pred CCceEEeeecCCCCcccH
Q 017702 61 LKPFKIADLGCSVGPNTL 78 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~ 78 (367)
-.+.+|+|+|||.|.-+.
T Consensus 32 f~P~~vLD~GsGpGta~w 49 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALW 49 (274)
T ss_pred CCCceEEEecCChHHHHH
Confidence 356899999999997554
No 193
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=85.98 E-value=3.7 Score=32.46 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHhhccCceEEEEeec
Q 017702 206 SFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 206 ~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
..+.....-|+|||.+++....
T Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 136 KALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred HHHHHHHHhcCCCcEEEEEecc
Confidence 3677777889999999999886
No 194
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=85.81 E-value=1 Score=43.89 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=17.4
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
.-+|+|+|||+|..|+.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 36899999999999988863
No 195
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=84.99 E-value=0.65 Score=43.43 Aligned_cols=21 Identities=38% Similarity=0.319 Sum_probs=18.0
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
+.-+|+|+|||+|..|..+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHH
Confidence 446899999999999998864
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=81.62 E-value=4.2 Score=39.22 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=63.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhh--cCCc-cccceeecc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFK--SLPH-ARKYFAAGL 137 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~--~l~~-~~~~f~~gv 137 (367)
....+|+|-.||+|..-+.++..+.+. ... .+ +.+++-.|.-..-....-. .+.. ....+-...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~----~~~------~~---~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEK----RNK------IK---EINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTC----HHH------HC---CEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred cccceeechhhhHHHHHHHHHHhhccc----ccc------cc---cceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 345799999999999888777655332 111 12 4588887774322111000 0111 111111222
Q ss_pred CccccccCCC-CCceeEEEecccc--c-cccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 017702 138 PGSFHSRLFP-RSSIHFVHTSYAL--H-WLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAE 213 (367)
Q Consensus 138 p~SFy~~l~P-~~svd~~~S~~al--h-WLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 213 (367)
.-+|...... ...+|+++++=-+ . | ........ .-|.++ ..... ..|+ .|+.+--+
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~---~~~~~~~~--~~~~~~--~~~~~------------~~~~-~Fi~~~l~ 171 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEW---KDEELEKD--ERFKKY--FPPKS------------NAEY-AFIEHALS 171 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES----STGGGCTT--CCCTTC--SSSTT------------EHHH-HHHHHHHH
T ss_pred cccccccccccccccccccCCCCcccccc---cccccccc--cccccc--CCCcc------------chhh-hhHHHHHh
Confidence 2244444444 6899999995211 1 3 11111100 011111 00001 1122 38888899
Q ss_pred hhccCceEEEEeec
Q 017702 214 ELVPGGLMVLILAA 227 (367)
Q Consensus 214 EL~pGG~lvl~~~g 227 (367)
-|++||++++.++.
T Consensus 172 ~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 172 LLKPGGRAAIILPN 185 (311)
T ss_dssp TEEEEEEEEEEEEH
T ss_pred hcccccceeEEecc
Confidence 99999999999885
No 197
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=81.55 E-value=7.6 Score=34.85 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=60.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCccccceeecc--Cc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHARKYFAAGL--PG 139 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~~~~f~~gv--p~ 139 (367)
+..-|++||-|||..|-.+++.-+ .|. .++.+= .+-||-.....+.+..+++ -|. .-
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv---------------~~~--~L~~iE---~~~dF~~~L~~~~p~~~ii-~gda~~l 106 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV---------------RPE--SLTAIE---YSPDFVCHLNQLYPGVNII-NGDAFDL 106 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC---------------Ccc--ceEEEE---eCHHHHHHHHHhCCCcccc-ccchhhH
Confidence 346899999999999987763221 120 111111 2357877777665544322 111 01
Q ss_pred cccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCc
Q 017702 140 SFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGG 219 (367)
Q Consensus 140 SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 219 (367)
.=|--.++..-+|.++| ++--|+ .| ....-+ +|+.--.-|.+||
T Consensus 107 ~~~l~e~~gq~~D~viS--~lPll~-~P----------------------~~~~ia-----------ile~~~~rl~~gg 150 (194)
T COG3963 107 RTTLGEHKGQFFDSVIS--GLPLLN-FP----------------------MHRRIA-----------ILESLLYRLPAGG 150 (194)
T ss_pred HHHHhhcCCCeeeeEEe--cccccc-Cc----------------------HHHHHH-----------HHHHHHHhcCCCC
Confidence 11223456667888888 333333 22 222222 4444446678999
Q ss_pred eEEEEeec
Q 017702 220 LMVLILAA 227 (367)
Q Consensus 220 ~lvl~~~g 227 (367)
.++....|
T Consensus 151 ~lvqftYg 158 (194)
T COG3963 151 PLVQFTYG 158 (194)
T ss_pred eEEEEEec
Confidence 99998888
No 198
>PRK11524 putative methyltransferase; Provisional
Probab=81.07 E-value=3.5 Score=39.60 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhccCceEEEEe
Q 017702 204 MESFLNARAEELVPGGLMVLIL 225 (367)
Q Consensus 204 ~~~fL~~Ra~EL~pGG~lvl~~ 225 (367)
+..+|....+-|||||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678888889999999999864
No 199
>PRK04148 hypothetical protein; Provisional
Probab=80.72 E-value=4.5 Score=34.74 Aligned_cols=20 Identities=25% Similarity=0.044 Sum_probs=15.2
Q ss_pred CceEEeeecCCCCc-ccHHHH
Q 017702 62 KPFKIADLGCSVGP-NTLLAV 81 (367)
Q Consensus 62 ~~~~IaD~GCs~G~-nT~~~~ 81 (367)
+..+|+|+|||+|. .+..+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH
Confidence 45799999999996 555444
No 200
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=79.02 E-value=7 Score=39.76 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.5
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
..+|+|+|||+|..|+.+.+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHH
Confidence 46899999999999998764
No 201
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=77.59 E-value=6.4 Score=35.42 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=16.3
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
...+++|+=||||...+..++
T Consensus 42 ~g~~vLDLFaGSGalGlEALS 62 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALS 62 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHH
T ss_pred CCCeEEEcCCccCccHHHHHh
Confidence 358999999999999998774
No 202
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=76.90 E-value=11 Score=34.00 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=54.9
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCc--cchHH-HhhcCCccccceeeccCccc
Q 017702 65 KIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSD--NDFNT-LFKSLPHARKYFAAGLPGSF 141 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~--NDFn~-lf~~l~~~~~~f~~gvp~SF 141 (367)
+|+|+|+|-|--.+.+. | . .| +.++++-|--. .+|=. .-+.|.-.+-....+-
T Consensus 51 ~~lDiGSGaGfPGipLa--I-------~--------~p---~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R---- 106 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLA--I-------A--------RP---DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR---- 106 (184)
T ss_dssp EEEEETSTTTTTHHHHH--H-------H---------T---TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-----
T ss_pred eEEecCCCCCChhHHHH--H-------h--------CC---CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee----
Confidence 89999999999998774 1 1 34 56777777652 22222 1112221111111111
Q ss_pred cccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceE
Q 017702 142 HSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLM 221 (367)
Q Consensus 142 y~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 221 (367)
.+....+.++|+++|=+. ..+..++.....-|++||++
T Consensus 107 ~E~~~~~~~fd~v~aRAv------------------------------------------~~l~~l~~~~~~~l~~~G~~ 144 (184)
T PF02527_consen 107 AEEPEYRESFDVVTARAV------------------------------------------APLDKLLELARPLLKPGGRL 144 (184)
T ss_dssp HHHTTTTT-EEEEEEESS------------------------------------------SSHHHHHHHHGGGEEEEEEE
T ss_pred ecccccCCCccEEEeehh------------------------------------------cCHHHHHHHHHHhcCCCCEE
Confidence 122456788999988111 13456777778889999998
Q ss_pred EEEee
Q 017702 222 VLILA 226 (367)
Q Consensus 222 vl~~~ 226 (367)
++.-+
T Consensus 145 l~~KG 149 (184)
T PF02527_consen 145 LAYKG 149 (184)
T ss_dssp EEEES
T ss_pred EEEcC
Confidence 76653
No 203
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.91 E-value=30 Score=32.19 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=16.5
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~ 81 (367)
-.+.+|+|.|||.+|-.+.
T Consensus 83 G~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFA 101 (237)
T ss_pred CcceeecCCCccHHHHHHH
Confidence 3789999999999998765
No 204
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=73.20 E-value=11 Score=35.70 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.1
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
+.-.|+|+|.|.|..|..+.+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~ 50 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLK 50 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhc
Confidence 468999999999999999986
No 205
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=72.85 E-value=4.4 Score=40.57 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=16.8
Q ss_pred eEEeeecCCCCcccHHHHH
Q 017702 64 FKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~ 82 (367)
.+|+|+|||+|..|+.+..
T Consensus 235 ~~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred CEEEEccCCccHHHHHHhh
Confidence 5899999999999998873
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=70.98 E-value=1.2e+02 Score=30.29 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=76.7
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc--cc-ceeeccC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA--RK-YFAAGLP 138 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~--~~-~f~~gvp 138 (367)
...+|+|+=++.|+=|..+.+.. . .. ...|+-+|....=...|..++.-- .+ .-+..+.
T Consensus 156 pge~VlD~cAAPGGKTthla~~~---------~------~~---~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~ 217 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELM---------E------NE---GAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA 217 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhc---------C------CC---CceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 34999999999999999887544 1 11 125789999877766777665321 12 2222232
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCC-cccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKG-SIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g-~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
..+.+.....+.+|-|.- +.||.-.... .|. .+....++.++.+.-. --.++|.+-.+-|||
T Consensus 218 ~~~~~~~~~~~~fD~iLl--------DaPCSg~G~i----rr~Pd~~~~~~~~~i~~l~~-----lQ~~iL~~a~~~lk~ 280 (355)
T COG0144 218 RRLAELLPGGEKFDRILL--------DAPCSGTGVI----RRDPDVKWRRTPEDIAELAK-----LQKEILAAALKLLKP 280 (355)
T ss_pred ccccccccccCcCcEEEE--------CCCCCCCccc----ccCccccccCCHHHHHHHHH-----HHHHHHHHHHHhcCC
Confidence 223333333334787765 7787644311 000 0111222232322222 233689999999999
Q ss_pred CceEEEEeec
Q 017702 218 GGLMVLILAA 227 (367)
Q Consensus 218 GG~lvl~~~g 227 (367)
||.||-++..
T Consensus 281 GG~LVYSTCS 290 (355)
T COG0144 281 GGVLVYSTCS 290 (355)
T ss_pred CCEEEEEccC
Confidence 9999999987
No 207
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=68.51 E-value=44 Score=33.57 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=33.0
Q ss_pred HHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCH
Q 017702 207 FLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSE 262 (367)
Q Consensus 207 fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~ 262 (367)
.+.+--.-+.|||.||++-.| .+-+ |+.|..|-..|.+.|..+.
T Consensus 207 ~ie~lw~l~~~gg~lVivErG-tp~G-----------f~~I~rAR~~ll~~~~~~~ 250 (484)
T COG5459 207 NIERLWNLLAPGGHLVIVERG-TPAG-----------FERILRARQILLAPGNFPD 250 (484)
T ss_pred HHHHHHHhccCCCeEEEEeCC-Cchh-----------HHHHHHHHHHHhcCCCCcc
Confidence 455666788999999999877 3322 6888888888888886643
No 208
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=68.28 E-value=1e+02 Score=30.52 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHH
Q 017702 203 DMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEA 282 (367)
Q Consensus 203 D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~ 282 (367)
..-.+|....+-|||||..+ .+| . = +.+... ..|. -+-+..-.+.|++..
T Consensus 274 NileYi~tI~~iLk~GGvWi--NlG-P-L---lYHF~d---------------~~g~--------~~~~siEls~edl~~ 323 (369)
T KOG2798|consen 274 NILEYIDTIYKILKPGGVWI--NLG-P-L---LYHFED---------------THGV--------ENEMSIELSLEDLKR 323 (369)
T ss_pred HHHHHHHHHHHhccCCcEEE--ecc-c-e---eeeccC---------------CCCC--------cccccccccHHHHHH
Confidence 44468999999999999854 444 1 0 111000 0111 133455788999999
Q ss_pred HHHhCCceEEeEEEEEecCCCCCCHHHHHH
Q 017702 283 IIRTNGNFTIEKMEKLSQPRRRITANEYAS 312 (367)
Q Consensus 283 ~l~~~g~F~I~~lE~~~~p~~~~~~~~v~~ 312 (367)
+...-| |++++-+.++.. .-..++.+..
T Consensus 324 v~~~~G-F~~~ke~~Idt~-Y~~nprsm~~ 351 (369)
T KOG2798|consen 324 VASHRG-FEVEKERGIDTT-YGTNPRSMME 351 (369)
T ss_pred HHHhcC-cEEEEeeeeecc-cCCCHHHHhh
Confidence 988776 999988866554 2233555544
No 209
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=67.44 E-value=18 Score=36.00 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.5
Q ss_pred eEEeeecCCCCcccHHHHH
Q 017702 64 FKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~ 82 (367)
.+|+|++||+|..|+.+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~ 226 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR 226 (362)
T ss_pred CeEEEEeccccHHHHHHHh
Confidence 4699999999999997764
No 210
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.26 E-value=4.9 Score=37.86 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.0
Q ss_pred CCCceEEeeecCCCCcccHHHHH
Q 017702 60 TLKPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~~ 82 (367)
..+..+++|+|+|||..|..+++
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq 99 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQ 99 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHH
Confidence 45678999999999999998874
No 211
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=65.12 E-value=23 Score=34.54 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhccCceEEEEeec
Q 017702 194 RAYSTQYKNDMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 194 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
..+-.+--..++.+|..-.+-|+|||+|++..+-
T Consensus 205 RI~VN~El~~L~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 205 RIEVNDELEELERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 5566777788999999999999999999999986
No 212
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=64.67 E-value=21 Score=35.47 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=16.1
Q ss_pred EEeeecCCCCcccHHHHH
Q 017702 65 KIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~ 82 (367)
+|+|+|||+|..|+.+.+
T Consensus 200 ~vlDl~~G~G~~sl~la~ 217 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQ 217 (353)
T ss_pred cEEEEeccccHHHHHHHH
Confidence 699999999999997764
No 213
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=64.38 E-value=1.2e+02 Score=31.18 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=78.5
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCc---cccceeecc
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPH---ARKYFAAGL 137 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~---~~~~f~~gv 137 (367)
....||+|.=|+.|.-|-.+..-. ++ .- .+|-||--.|--..|-.+++. .+-+-....
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalM---------kn-----~G-----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D 300 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALM---------KN-----TG-----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYD 300 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHH---------cC-----Cc-----eEEecccchHHHHHHHHHHHHhCCCceEEEccC
Confidence 446999999999999996554222 21 12 489999877766666666542 234445555
Q ss_pred CccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 017702 138 PGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVP 217 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 217 (367)
+..|=+-.||+ |+|=|.- +.||.=+. ..+|..-.+++........|.. =-++.|..--+-+++
T Consensus 301 ~~ef~~~~~~~-~fDRVLL--------DAPCSGtg----vi~K~~~vkt~k~~~di~~~~~----LQr~LllsAi~lv~~ 363 (460)
T KOG1122|consen 301 GREFPEKEFPG-SFDRVLL--------DAPCSGTG----VISKDQSVKTNKTVKDILRYAH----LQRELLLSAIDLVKA 363 (460)
T ss_pred cccccccccCc-ccceeee--------cCCCCCCc----ccccccccccchhHHHHHHhHH----HHHHHHHHHHhhccC
Confidence 55666666777 7776643 56764322 1122233333332322222211 122455566678899
Q ss_pred CceEEEEeecc
Q 017702 218 GGLMVLILAAV 228 (367)
Q Consensus 218 GG~lvl~~~g~ 228 (367)
||+||-++..+
T Consensus 364 GGvLVYSTCSI 374 (460)
T KOG1122|consen 364 GGVLVYSTCSI 374 (460)
T ss_pred CcEEEEEeeec
Confidence 99999999873
No 214
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=64.28 E-value=20 Score=35.07 Aligned_cols=50 Identities=30% Similarity=0.494 Sum_probs=39.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 017702 194 RAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAK 256 (367)
Q Consensus 194 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~ 256 (367)
..|-.+-...++.+|.+--+-|+|||+|++..|-+.+| ..++..+++.+.
T Consensus 213 RI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHSLED-------------RiVK~ff~~~s~ 262 (314)
T COG0275 213 RIYVNDELEELEEALEAALDLLKPGGRLAVISFHSLED-------------RIVKNFFKELSK 262 (314)
T ss_pred eeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecchHH-------------HHHHHHHHHhcc
Confidence 66778888999999999999999999999999862333 455556666554
No 215
>PRK13699 putative methylase; Provisional
Probab=62.45 E-value=16 Score=34.07 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhccCceEEEEe
Q 017702 205 ESFLNARAEELVPGGLMVLIL 225 (367)
Q Consensus 205 ~~fL~~Ra~EL~pGG~lvl~~ 225 (367)
..+|..-++-|||||.|++.+
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 466777788999999887643
No 216
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=61.50 E-value=5.1 Score=36.16 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=17.4
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~ 82 (367)
..+++|++||+|..++.+++
T Consensus 50 g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred CCEEEEecCCCcHHHHHHHh
Confidence 36899999999999998873
No 217
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=61.17 E-value=69 Score=29.09 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.8
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~ 82 (367)
..-+++|+=+|||...+..++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlS 63 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALS 63 (187)
T ss_pred CCCEEEEecCCccHhHHHHHh
Confidence 357999999999999999886
No 218
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=60.98 E-value=19 Score=34.86 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=58.5
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccch-----HHHhhcCCccccceeeccC
Q 017702 64 FKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDF-----NTLFKSLPHARKYFAAGLP 138 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDF-----n~lf~~l~~~~~~f~~gvp 138 (367)
-+|+|+=|=||..|+..+. .+ . -+|+.-|+..--- |--.+.+...+--|+.+.-
T Consensus 125 krvLnlFsYTGgfsv~Aa~------------gG-----A----~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv 183 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAA------------GG-----A----KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV 183 (286)
T ss_dssp CEEEEET-TTTHHHHHHHH------------TT-----E----SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H
T ss_pred CceEEecCCCCHHHHHHHH------------CC-----C----CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH
Confidence 5999999999999997652 11 1 1455666642100 0011111112223455544
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPG 218 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 218 (367)
-.|..++--.+.+|+|+. ++| . +-|++- +..+|+...+..-.+-|+||
T Consensus 184 f~~l~~~~~~~~fD~IIl--------DPP-s--------F~k~~~---------------~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 184 FKFLKRLKKGGRFDLIIL--------DPP-S--------FAKSKF---------------DLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp HHHHHHHHHTT-EEEEEE----------S-S--------EESSTC---------------EHHHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCCEEEE--------CCC-C--------CCCCHH---------------HHHHHHHHHHHHHHHhcCCC
Confidence 444554433468999988 333 2 223311 12357777888888999999
Q ss_pred ceEEEEeec
Q 017702 219 GLMVLILAA 227 (367)
Q Consensus 219 G~lvl~~~g 227 (367)
|.|+++...
T Consensus 232 G~l~~~scs 240 (286)
T PF10672_consen 232 GLLLTCSCS 240 (286)
T ss_dssp EEEEEEE--
T ss_pred CEEEEEcCC
Confidence 998766654
No 219
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=60.91 E-value=5.8 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=15.6
Q ss_pred CceEEeeecCCCCcccHHH
Q 017702 62 KPFKIADLGCSVGPNTLLA 80 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~ 80 (367)
..-+|+|+|||.|..++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred cCcchhhhcCchhhhHHHh
Confidence 4578999999999998544
No 220
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=60.20 E-value=4.3 Score=37.49 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=15.6
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~ 81 (367)
-.-+||||||=|...+.+.
T Consensus 61 kvefaDIGCGyGGLlv~Ls 79 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLA 79 (249)
T ss_pred cceEEeeccCccchhhhcc
Confidence 3779999999998877653
No 221
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=59.72 E-value=47 Score=31.23 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=62.0
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCcc--chH-HHhhcC----Cccccce
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDN--DFN-TLFKSL----PHARKYF 133 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~N--DFn-~lf~~l----~~~~~~f 133 (367)
+++-+|+=+|=|.|..+..++.. ++ .-++..-|+-.. +.. ..|... ...+--.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~-----------------~~---~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i 134 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH-----------------PP---VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI 134 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS-----------------TT----SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhc-----------------CC---cceEEEEecChHHHHHHHHhchhhccccCCCceEE
Confidence 46789999999999877766510 11 114445455421 111 111111 1123335
Q ss_pred eeccCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 017702 134 AAGLPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAE 213 (367)
Q Consensus 134 ~~gvp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 213 (367)
..+++..|.++.--. .+|+|+.=..--+ -|. . ..|. ..|++..++
T Consensus 135 ~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~---~~~---~---~l~t-------------------------~ef~~~~~~ 179 (246)
T PF01564_consen 135 IIGDGRKFLKETQEE-KYDVIIVDLTDPD---GPA---P---NLFT-------------------------REFYQLCKR 179 (246)
T ss_dssp EESTHHHHHHTSSST--EEEEEEESSSTT---SCG---G---GGSS-------------------------HHHHHHHHH
T ss_pred EEhhhHHHHHhccCC-cccEEEEeCCCCC---CCc---c---cccC-------------------------HHHHHHHHh
Confidence 677777777765444 8999987332111 000 0 0111 159999999
Q ss_pred hhccCceEEEEeec
Q 017702 214 ELVPGGLMVLILAA 227 (367)
Q Consensus 214 EL~pGG~lvl~~~g 227 (367)
-|+|||.+++...+
T Consensus 180 ~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 180 RLKPDGVLVLQAGS 193 (246)
T ss_dssp HEEEEEEEEEEEEE
T ss_pred hcCCCcEEEEEccC
Confidence 99999999998854
No 222
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=58.48 E-value=5.9 Score=32.82 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=17.4
Q ss_pred CCceEEeeecCCCCcccHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~ 82 (367)
.++...+|+|||-|-+.-.+.+
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~ 78 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS 78 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh
Confidence 3567899999999987766653
No 223
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=58.44 E-value=14 Score=33.81 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.2
Q ss_pred CCCceEEeeecCCCCcccHHHHHHH
Q 017702 60 TLKPFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~~~i 84 (367)
..+--+|+|+||+.|.=|...++.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhh
Confidence 3456899999999999988877544
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=57.05 E-value=25 Score=35.42 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=34.6
Q ss_pred CCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHHH
Q 017702 20 DAYSYANNSTYQRGVVDAAKELISEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 20 g~~sY~~nS~~Q~~~~~~~~~ll~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~~ 82 (367)
++-.||-.+..-+...-.+...+.+.. . ....++|+|..||+|.-++..+.
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~------~------~~~~~~vLD~faGsG~rgir~a~ 64 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLY------G------KECYINIADALSASGIRAIRYAH 64 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhh------C------CcCCCEEEECCCchhHHHHHHHh
Confidence 346999888877776654444332211 0 12258999999999999998874
No 225
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=54.28 E-value=7.1 Score=32.68 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=15.2
Q ss_pred EEeeecCCCCcccHHHHH
Q 017702 65 KIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~ 82 (367)
+|+|+||+.|..|+.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~ 18 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFAR 18 (143)
T ss_pred CEEEccCCccHHHHHHHH
Confidence 589999999999887753
No 226
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=53.07 E-value=64 Score=30.98 Aligned_cols=129 Identities=17% Similarity=0.178 Sum_probs=68.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCCcc--ccceee-ccC
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLPHA--RKYFAA-GLP 138 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~-gvp 138 (367)
...+|+|.-+|.|.-|..+.+.+ .. .. .++-+|.-.+-...|-..+... .++-+. ...
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~--------~~------~g-----~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~ 145 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELM--------GN------KG-----EIVANDISPKRLKRLKENLKRLGVFNVIVINADA 145 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHT--------TT------TS-----EEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH
T ss_pred ccccccccccCCCCceeeeeecc--------cc------hh-----HHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc
Confidence 34679999999999998776433 10 12 5788888766666655544221 111111 222
Q ss_pred ccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCC-cccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhh--
Q 017702 139 GSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKG-SIQCSESNIEVVRAYSTQYKNDMESFLNARAEEL-- 215 (367)
Q Consensus 139 ~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g-~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL-- 215 (367)
+.+. .-.+...+|.|.. ++||.-... +.+. .+.....+. ..+ .+.+--...|..-++-+
T Consensus 146 ~~~~-~~~~~~~fd~Vlv--------DaPCSg~G~----i~r~p~~~~~~~~~-~~~----~l~~~Q~~iL~~a~~~~~~ 207 (283)
T PF01189_consen 146 RKLD-PKKPESKFDRVLV--------DAPCSGLGT----IRRNPDIKWRRSPE-DIE----KLAELQREILDNAAKLLNI 207 (283)
T ss_dssp HHHH-HHHHTTTEEEEEE--------ECSCCCGGG----TTTCTTHHHHE-TT-HHH----HHHHHHHHHHHHHHHCEHH
T ss_pred cccc-ccccccccchhhc--------CCCccchhh----hhhccchhhccccc-ccc----hHHHHHHHHHHHHHHhhcc
Confidence 2221 1123335777765 566643210 0000 011111111 112 22223456788888889
Q ss_pred --ccCceEEEEeec
Q 017702 216 --VPGGLMVLILAA 227 (367)
Q Consensus 216 --~pGG~lvl~~~g 227 (367)
+|||+||-++..
T Consensus 208 ~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 208 DFKPGGRLVYSTCS 221 (283)
T ss_dssp HBEEEEEEEEEESH
T ss_pred cccCCCeEEEEecc
Confidence 999999999986
No 227
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=52.79 E-value=52 Score=32.22 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=29.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhccCceEEEEeec
Q 017702 194 RAYSTQYKNDMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 194 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
..+-.+--..+..+|..-.+-|+|||+|++..+-
T Consensus 209 RI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 209 RIYVNDELEELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 5566677788999999999999999999999985
No 228
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=49.61 E-value=25 Score=35.32 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=37.8
Q ss_pred cCccccccCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 137 LPGSFHSRLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 137 vp~SFy~~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
+-+-|-+..|+++++|++.+.-+.+.+++. .+ .++.-...++
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~~--------------------------~~------------~y~Ei~rv~k 206 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPDL--------------------------EK------------VYAEIYRVLK 206 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCcH--------------------------HH------------HHHHHhcccC
Confidence 444577888999999999997777774421 12 3333345699
Q ss_pred cCceEEEEeec
Q 017702 217 PGGLMVLILAA 227 (367)
Q Consensus 217 pGG~lvl~~~g 227 (367)
|||+++..-..
T Consensus 207 pGG~~i~~e~i 217 (364)
T KOG1269|consen 207 PGGLFIVKEWI 217 (364)
T ss_pred CCceEEeHHHH
Confidence 99999987775
No 229
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=45.99 E-value=12 Score=33.50 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCH
Q 017702 240 VGVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATP 277 (367)
Q Consensus 240 ~~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~ 277 (367)
.+++...+.+.+++||++|+++-|+.-.-|+=|.|+|.
T Consensus 38 K~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 38 KQIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred cccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 35677889999999999999999999988998999853
No 230
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=45.95 E-value=12 Score=33.18 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.0
Q ss_pred EEeeecCCCCcccHHHHHH
Q 017702 65 KIADLGCSVGPNTLLAVQN 83 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~~ 83 (367)
+|+|.-||.|.||+.+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6999999999999999853
No 231
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=45.40 E-value=31 Score=32.74 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=15.5
Q ss_pred CCCceEEeeecCCCCcccHHHH
Q 017702 60 TLKPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~ 81 (367)
.+.+-+|+|+|||-=+.++..|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~ 124 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWM 124 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTT
T ss_pred CCCCchhhhhhccCCceehhhc
Confidence 3558999999999988888766
No 232
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=45.16 E-value=69 Score=31.09 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCCceEEeeecCCCCcccHHHHH------------HHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccc
Q 017702 60 TLKPFKIADLGCSVGPNTLLAVQ------------NIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDND 118 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~~------------~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~ND 118 (367)
...+-.|+++|-|||..|..+++ .++..|.++..-. +- .. .+||++.|.-.-|
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt-p~--~~---kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT-PK--SG---KLQVLHGDFLKTD 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC-Cc--cc---eeeEEecccccCC
Confidence 34578999999999999999998 3455555554321 10 13 5788888766555
No 233
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=43.72 E-value=30 Score=31.66 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=35.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcCC--c-ccc-ceeecc
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSLP--H-ARK-YFAAGL 137 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l~--~-~~~-~f~~gv 137 (367)
...+|+|.-||.|+.|+.+... + .+ . .|+-+|+-..-+.-|-+++. . ... ....++
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~---------~-------~~---~-~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D 160 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKH---------G-------KA---K-RVYAVDLNPDAVEYLKENIRLNKVENRIEVINGD 160 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHH---------T--------S---S-EEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-
T ss_pred cceEEEEccCCccHHHHHHhhh---------c-------Cc---c-EEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCC
Confidence 3479999999999999987631 1 12 2 58888885444444444432 1 111 234555
Q ss_pred CccccccCCCCCceeEEE
Q 017702 138 PGSFHSRLFPRSSIHFVH 155 (367)
Q Consensus 138 p~SFy~~l~P~~svd~~~ 155 (367)
...|- +...+|-++
T Consensus 161 ~~~~~----~~~~~drvi 174 (200)
T PF02475_consen 161 AREFL----PEGKFDRVI 174 (200)
T ss_dssp GGG-------TT-EEEEE
T ss_pred HHHhc----CccccCEEE
Confidence 33333 266677333
No 234
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=43.64 E-value=17 Score=35.57 Aligned_cols=51 Identities=31% Similarity=0.420 Sum_probs=36.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhccCceEEEEeecccCCCCCCCCCchhhHHHHHHHHHHHHHHc
Q 017702 194 RAYSTQYKNDMESFLNARAEELVPGGLMVLILAAVVPDGIPLSNSYVGVFNNILGSCFNDLAKM 257 (367)
Q Consensus 194 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~n~~~~~~~~~~~~~~~l~~al~~m~~e 257 (367)
..+-.+--.-++.+|..-.+-|+|||+|++..+-+.+| ..+++.+++....
T Consensus 210 RI~VN~EL~~L~~~L~~a~~~L~~gGrl~VISFHSLED-------------RiVK~~f~~~~~~ 260 (310)
T PF01795_consen 210 RIAVNDELEELERGLEAAPDLLKPGGRLVVISFHSLED-------------RIVKQFFRELAKS 260 (310)
T ss_dssp HHHHCTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHH-------------HHHHHHHHCCSSC
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCcEEEEEEecchhh-------------HHHHHHHHHhccc
Confidence 44555556778999999999999999999999852222 4566666655444
No 235
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=42.88 E-value=1.4e+02 Score=28.83 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=17.7
Q ss_pred HHHHHHHHhhccCceEEEE
Q 017702 206 SFLNARAEELVPGGLMVLI 224 (367)
Q Consensus 206 ~fL~~Ra~EL~pGG~lvl~ 224 (367)
.|++..++-|+++|.++..
T Consensus 171 eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 171 EFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 5999999999999999988
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=42.22 E-value=16 Score=36.47 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.6
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~ 81 (367)
.-.+++|+|||+|.-|-.++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 45799999999999998776
No 237
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=40.49 E-value=30 Score=31.73 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.4
Q ss_pred eEEeeecCCCCcccHHHHHH
Q 017702 64 FKIADLGCSVGPNTLLAVQN 83 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~ 83 (367)
-+++|+|.|+|.+|+.....
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~ 53 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA 53 (252)
T ss_pred hceeeccCCcchHHHHHHhh
Confidence 57899999999999988754
No 238
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.57 E-value=18 Score=32.80 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHH
Q 017702 243 FNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPK 278 (367)
Q Consensus 243 ~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~e 278 (367)
.-..+.++++.|+++|+|..+++-+-|+=|-||+.+
T Consensus 28 ~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 28 VSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred chhhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 346789999999999999999999999999999653
No 239
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=39.35 E-value=45 Score=29.65 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHhhccCceEEEEeec
Q 017702 202 NDMESFLNARAEELVPGGLMVLILAA 227 (367)
Q Consensus 202 ~D~~~fL~~Ra~EL~pGG~lvl~~~g 227 (367)
+-+..+|..-.+-|+|||.+++....
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecc
Confidence 34566777777889999999887654
No 240
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=35.28 E-value=39 Score=23.86 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHcCCCCHhh
Q 017702 244 NNILGSCFNDLAKMGVLSEEK 264 (367)
Q Consensus 244 ~~~l~~al~~m~~eG~i~~~~ 264 (367)
-..|.++|++|+.+|.|+++-
T Consensus 12 G~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 368999999999999998643
No 241
>PRK00536 speE spermidine synthase; Provisional
Probab=32.74 E-value=1.4e+02 Score=28.55 Aligned_cols=22 Identities=0% Similarity=-0.372 Sum_probs=18.5
Q ss_pred CCCceEEeeecCCCCcccHHHH
Q 017702 60 TLKPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~ 81 (367)
.+.+-+|+=+|-|.|.....++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvL 91 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLF 91 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHH
Confidence 3567999999999999887776
No 242
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.22 E-value=31 Score=31.15 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCH
Q 017702 241 GVFNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATP 277 (367)
Q Consensus 241 ~~~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~ 277 (367)
+++|..+.++|+.||++|++..+++-.-|.=|-|||.
T Consensus 38 gIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~ 74 (203)
T KOG3433|consen 38 GIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSE 74 (203)
T ss_pred ceehhHHHHHHHHHhccchHHHHHhcccccccccchH
Confidence 4567889999999999999999999888888889875
No 243
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.00 E-value=1.5e+02 Score=26.87 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=45.7
Q ss_pred cCCCCCceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhccCceEEE
Q 017702 144 RLFPRSSIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELVPGGLMVL 223 (367)
Q Consensus 144 ~l~P~~svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 223 (367)
+++-.+..|+++-++|||=+++-.+. ..+|+++.+.+++..-.+-|.|+-.||.
T Consensus 44 ~ll~gg~~DVIi~Ns~LWDl~ry~~~--------------------------~~~~Y~~NL~~Lf~rLk~~lp~~allIW 97 (183)
T cd01842 44 VLLEGGRLDLVIMNSCLWDLSRYQRN--------------------------SMKTYRENLERLFSKLDSVLPIECLIVW 97 (183)
T ss_pred eeecCCceeEEEEecceecccccCCC--------------------------CHHHHHHHHHHHHHHHHhhCCCccEEEE
Confidence 34445677999999999988876520 1467888999999888888999999998
Q ss_pred Eeec
Q 017702 224 ILAA 227 (367)
Q Consensus 224 ~~~g 227 (367)
.+.-
T Consensus 98 ~tt~ 101 (183)
T cd01842 98 NTAM 101 (183)
T ss_pred ecCC
Confidence 8865
No 244
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=31.91 E-value=64 Score=29.85 Aligned_cols=23 Identities=17% Similarity=-0.013 Sum_probs=18.6
Q ss_pred CceEEeeecCCCCcccHHHHHHH
Q 017702 62 KPFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 62 ~~~~IaD~GCs~G~nT~~~~~~i 84 (367)
.-.+|+|+=-|.|.-|.++...+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~v 70 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAV 70 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhc
Confidence 34799999999999999886433
No 245
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=31.74 E-value=54 Score=25.62 Aligned_cols=43 Identities=14% Similarity=0.327 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHh
Q 017702 243 FNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRT 286 (367)
Q Consensus 243 ~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~ 286 (367)
+...+..+|+.|...|.++++|-|....|.+.|+.. -+.+|..
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sqq-ARrLLD~ 54 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQQ-ARRLLDL 54 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHHH-HHHHHHH
Confidence 345678889999999999999999999998888653 3555543
No 246
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=31.63 E-value=42 Score=31.84 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.8
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~ 81 (367)
.+-.+|+|-=.|=|..++..+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~ 153 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEAL 153 (287)
T ss_pred ccCCEeeeeccCccHHHHHHH
Confidence 346899999888898887665
No 247
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=31.05 E-value=3.2e+02 Score=27.74 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=66.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccc-----hHHHhhcCCccccceeecc
Q 017702 63 PFKIADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDND-----FNTLFKSLPHARKYFAAGL 137 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~ND-----Fn~lf~~l~~~~~~f~~gv 137 (367)
--+|+|+=|=||..|+.... .+ . . +|+.-|+..-- -|--.+.+...+--|+.+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~------------gG-----A---~-~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~D 276 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAAL------------GG-----A---S-EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGD 276 (393)
T ss_pred CCeEEEecccCcHHHHHHHh------------cC-----C---C-ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhh
Confidence 36899999999999987751 11 1 1 46777775210 0111111222223355555
Q ss_pred CccccccCCCCC-ceeEEEeccccccccCCCccccCCCCCCCCCCcccccCCCHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 017702 138 PGSFHSRLFPRS-SIHFVHTSYALHWLSKVPKEIVDPCSPAWNKGSIQCSESNIEVVRAYSTQYKNDMESFLNARAEELV 216 (367)
Q Consensus 138 p~SFy~~l~P~~-svd~~~S~~alhWLs~~P~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 216 (367)
--.|.+..-..+ .+|+|+- + ||.. +=+|.. ..++.+|....+...-+-|+
T Consensus 277 vf~~l~~~~~~g~~fDlIil--------D-PPsF------~r~k~~--------------~~~~~rdy~~l~~~~~~iL~ 327 (393)
T COG1092 277 VFKWLRKAERRGEKFDLIIL--------D-PPSF------ARSKKQ--------------EFSAQRDYKDLNDLALRLLA 327 (393)
T ss_pred HHHHHHHHHhcCCcccEEEE--------C-Cccc------ccCccc--------------chhHHHHHHHHHHHHHHHcC
Confidence 444444444443 6677665 2 2211 111110 14567788889999999999
Q ss_pred cCceEEEEeec
Q 017702 217 PGGLMVLILAA 227 (367)
Q Consensus 217 pGG~lvl~~~g 227 (367)
|||.++++...
T Consensus 328 pgG~l~~~s~~ 338 (393)
T COG1092 328 PGGTLVTSSCS 338 (393)
T ss_pred CCCEEEEEecC
Confidence 99999988875
No 248
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=30.32 E-value=64 Score=30.17 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=17.6
Q ss_pred CCceEEeeecCCCCcccHHHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~i 84 (367)
..+++|+|+|.|+|.+..-+++.+
T Consensus 17 ~~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 17 SEPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp SS-EEEEEES-TTSHHHHHHHHHH
T ss_pred CcCcEEEEECCCchHHHHHHHHHH
Confidence 346999999999999887766544
No 249
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=30.16 E-value=45 Score=32.50 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=19.0
Q ss_pred ceEEeeecCCCCcccHHHHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~~~i 84 (367)
..+++|.+||.|.-|..+++.+
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~ 41 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERL 41 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhC
Confidence 3689999999999999998643
No 250
>smart00400 ZnF_CHCC zinc finger.
Probab=29.92 E-value=43 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=17.5
Q ss_pred eEEeeecCCCCcccHHHHHHH
Q 017702 64 FKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~i 84 (367)
-..-++||+.|.+.+-+++.+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 456789999999999888755
No 251
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=29.83 E-value=5.4e+02 Score=25.15 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=18.4
Q ss_pred eEEeeecCCCCcccHHHHHHH
Q 017702 64 FKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~~~i 84 (367)
-+|++=|.|+|..|..+...+
T Consensus 107 svV~EsGTGSGSlShaiaraV 127 (314)
T KOG2915|consen 107 SVVLESGTGSGSLSHAIARAV 127 (314)
T ss_pred CEEEecCCCcchHHHHHHHhh
Confidence 789999999999999887654
No 252
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=29.33 E-value=41 Score=34.70 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.5
Q ss_pred CCCceEEeeecCCCCcccHHHHH
Q 017702 60 TLKPFKIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 60 ~~~~~~IaD~GCs~G~nT~~~~~ 82 (367)
..+..-++|||.|||-+|+..+.
T Consensus 64 ~~gkv~vLdigtGTGLLSmMAvr 86 (636)
T KOG1501|consen 64 DIGKVFVLDIGTGTGLLSMMAVR 86 (636)
T ss_pred cCceEEEEEccCCccHHHHHHHH
Confidence 34568899999999999998776
No 253
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.24 E-value=55 Score=20.54 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.9
Q ss_pred HHHHHHHcCCCCHhhhh
Q 017702 250 CFNDLAKMGVLSEEKVD 266 (367)
Q Consensus 250 al~~m~~eG~i~~~~~d 266 (367)
.+++|.+.|.|+++++.
T Consensus 7 ~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHcCCCCHHHHH
Confidence 47788899999987765
No 254
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=28.89 E-value=28 Score=33.65 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=15.2
Q ss_pred eEEeeecCCCCcccHHHH
Q 017702 64 FKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 64 ~~IaD~GCs~G~nT~~~~ 81 (367)
-||+|||||+|--.+...
T Consensus 118 k~vLELgCg~~Lp~i~~~ 135 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAF 135 (282)
T ss_pred ceeEecCCcccccchhhh
Confidence 689999999998877554
No 255
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=27.13 E-value=24 Score=22.93 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=7.3
Q ss_pred CcccCCHHHHHHHH
Q 017702 271 PTYNATPKELEAII 284 (367)
Q Consensus 271 P~y~~s~eE~~~~l 284 (367)
|.++||.+|+++.+
T Consensus 1 Pvf~Pt~eEF~dp~ 14 (34)
T PF02375_consen 1 PVFYPTMEEFKDPI 14 (34)
T ss_dssp EEE---HHHHS-HH
T ss_pred CcccCCHHHHhCHH
Confidence 56788888887665
No 256
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=25.32 E-value=37 Score=31.14 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=28.3
Q ss_pred EeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEcCCCccchHHHhhcC
Q 017702 66 IADLGCSVGPNTLLAVQNIIEAIELKFQRTTNLHQKPSALEFQVFLNDHSDNDFNTLFKSL 126 (367)
Q Consensus 66 IaD~GCs~G~nT~~~~~~ii~~i~~~~~~~~~~~~~p~~~e~~v~~nDlp~NDFn~lf~~l 126 (367)
|||+||=+|...+.+++. .. --.++..|+-..-+...-.++
T Consensus 1 vaDIGtDHgyLpi~L~~~-----------------~~---~~~~ia~DI~~gpL~~A~~~i 41 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-----------------GK---APKAIAVDINPGPLEKAKENI 41 (205)
T ss_dssp EEEET-STTHHHHHHHHT-----------------TS---EEEEEEEESSHHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHhc-----------------CC---CCEEEEEeCCHHHHHHHHHHH
Confidence 799999999999988721 11 227999999876655555444
No 257
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=25.31 E-value=2.7e+02 Score=26.16 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=16.5
Q ss_pred CCceEEeeecCCCCcccHHHHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNII 85 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~ii 85 (367)
..-.+|+-+|.|+|. |..-++.|+
T Consensus 72 k~gskVLYLGAasGT-TVSHvSDIv 95 (229)
T PF01269_consen 72 KPGSKVLYLGAASGT-TVSHVSDIV 95 (229)
T ss_dssp -TT-EEEEETTTTSH-HHHHHHHHH
T ss_pred CCCCEEEEecccCCC-ccchhhhcc
Confidence 345899999999995 555556665
No 258
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=24.68 E-value=1.3e+02 Score=27.85 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHhCC
Q 017702 244 NNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRTNG 288 (367)
Q Consensus 244 ~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~~g 288 (367)
|+.+..|+..|..+|+.+.+++.+ -+.+|+.++|..+|
T Consensus 45 WknvekAlenLk~~~~~~l~~I~~-------~~~~~L~elIrpsG 82 (215)
T COG2231 45 WKNVEKALENLKNEGILNLKKILK-------LDEEELAELIRPSG 82 (215)
T ss_pred HHHHHHHHHHHHHcccCCHHHHhc-------CCHHHHHHHHhccc
Confidence 789999999999999998777763 34777888887776
No 259
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=24.02 E-value=3.7e+02 Score=25.27 Aligned_cols=38 Identities=5% Similarity=-0.054 Sum_probs=29.5
Q ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHhcCCeEEEEEEE
Q 017702 326 FGDEFVDEIFNYFTTKVEENYSIIEEKIRNVSNLFISL 363 (367)
Q Consensus 326 ~~~~~~de~f~ry~~~~~~~~~~~~~~~~~~~~~~~~l 363 (367)
+..+.+++.++...+.++.-..+|....++.+++-++.
T Consensus 257 Ip~~~~~qA~~eLdeiir~WAdrYH~~gg~~mv~qmvf 294 (299)
T PRK13245 257 IPPERMEQAMEELDEIIRHWADKYHQDGGIPMVLQMVF 294 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 56778888888888888877777777788888777664
No 260
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=23.94 E-value=64 Score=23.51 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=23.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhccCce
Q 017702 194 RAYSTQYKNDMESFLNARAEELVPGGL 220 (367)
Q Consensus 194 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 220 (367)
+.+++-|..||..++......||.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 566777888999999999999998775
No 261
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=22.79 E-value=83 Score=29.20 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=17.3
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017702 63 PFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 63 ~~~IaD~GCs~G~nT~~~~ 81 (367)
..+++|+|+|-|--.+.+.
T Consensus 68 ~~~~~DIGSGaGfPGipLA 86 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA 86 (215)
T ss_pred CCEEEEeCCCCCCchhhHH
Confidence 5899999999999999875
No 262
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.55 E-value=1.4e+02 Score=27.58 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=19.7
Q ss_pred CCceEEeeecCCCCcccHHHHHHH
Q 017702 61 LKPFKIADLGCSVGPNTLLAVQNI 84 (367)
Q Consensus 61 ~~~~~IaD~GCs~G~nT~~~~~~i 84 (367)
.+-.+|+||||+.|.=|-.+.+.+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~ 67 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKL 67 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHh
Confidence 456899999999999998776544
No 263
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=22.27 E-value=1e+02 Score=30.55 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.7
Q ss_pred EEeeecCCCCcccHHHHH
Q 017702 65 KIADLGCSVGPNTLLAVQ 82 (367)
Q Consensus 65 ~IaD~GCs~G~nT~~~~~ 82 (367)
+|+|+=||+|..|+.+.+
T Consensus 199 ~vlDlycG~G~fsl~la~ 216 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAK 216 (352)
T ss_dssp EEEEES-TTTCCHHHHHC
T ss_pred cEEEEeecCCHHHHHHHh
Confidence 799999999999999875
No 264
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=22.21 E-value=1.4e+02 Score=26.64 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHcCCCCHhhhhccCCCcccCCHHHHHHHHHh
Q 017702 243 FNNILGSCFNDLAKMGVLSEEKVDSFNLPTYNATPKELEAIIRT 286 (367)
Q Consensus 243 ~~~~l~~al~~m~~eG~i~~~~~d~f~~P~y~~s~eE~~~~l~~ 286 (367)
+|+.+.+-++.|+++|.++++..+. .....+++|+.+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~~---~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLKL---IHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcCc---EEEcCCHHHHHHHHHh
Confidence 5788888888999999998876653 3347888888887753
No 265
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=82 Score=27.85 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=35.4
Q ss_pred ecccCCCCCchHHHhhHHHHHHHHHH-HHHH---HHHHHhhhcccccCCCCCCCceEEeeecCCCCcccHHHH
Q 017702 13 YPMVGGDDAYSYANNSTYQRGVVDAA-KELI---SEAIADKLDLKILGFDDTLKPFKIADLGCSVGPNTLLAV 81 (367)
Q Consensus 13 ~~M~gg~g~~sY~~nS~~Q~~~~~~~-~~ll---~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~nT~~~~ 81 (367)
+...||.|-.-|+--+..-+-++.++ .|.+ .+.++..+++- + ..+..+.+|+|+|+|.--+...
T Consensus 24 ~~aagg~gla~sav~a~fvaPafRR~cvPYVpAtteQv~nVLSll--~---~n~~GklvDlGSGDGRiVlaaa 91 (199)
T KOG4058|consen 24 LQAAGGSGLAASAVWALFVAPAFRRLCVPYVPATTEQVENVLSLL--R---GNPKGKLVDLGSGDGRIVLAAA 91 (199)
T ss_pred HHhccchhHHHHHHHHHHhhHHhheecccccCccHHHHHHHHHHc--c---CCCCCcEEeccCCCceeehhhh
Confidence 45567777666665544433333322 2222 33444444321 1 2344899999999998766554
Done!