BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017703
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AY5|A Chain A, Crystal Structure Of Hhm (Human Homologue Of Murine
Maternal Id-Like Molecule)
Length = 360
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 118/276 (42%), Gaps = 19/276 (6%)
Query: 42 WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
W + + VS++AT + ++++ P + ++ + ++ FI + + G
Sbjct: 53 WRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGI 112
Query: 101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
TL + + +VD +LM + S+T +N D + Y +VW AC + + P
Sbjct: 113 TLRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENND----LISY-NSVWVACQQMPQIPR 167
Query: 160 TNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDD---NSS 216
N A +T+ +KD EM++ S + + + +D+ + EDD S
Sbjct: 168 DNKAAALLMLTKNVDFVKDAHEEMEQAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPS 227
Query: 217 LDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLL 276
+L +E+ + LA+ S K ++ I L+ D V L+ ++
Sbjct: 228 NQDLYWSEDDQELIIPCLALVRAS------KACLKKIRMLVAENGKKDQ---VAQLDDIV 278
Query: 277 KLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSM 312
+ I +D+L S+YPP ++ S K++S+
Sbjct: 279 DISDEISPSVDDLALSIYPPMSHLTVRINSAKLVSV 314
>pdb|3MYX|A Chain A, Crystal Structure Of A Pspto_0244 (Protein With Unknown
Func Belongs To Pfam Duf861 Family) From Pseudomonas
Syringae Pv Str. Dc3000 At 1.30 A Resolution
pdb|3MYX|B Chain B, Crystal Structure Of A Pspto_0244 (Protein With Unknown
Func Belongs To Pfam Duf861 Family) From Pseudomonas
Syringae Pv Str. Dc3000 At 1.30 A Resolution
Length = 238
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 254 TGLLKHENPDDGGK---FVDTLERLLKLCQGIGVQIDELGASL----YPPQELSVIKAGS 306
TG + +P D G+ FVD QGI I E G +L YP E V GS
Sbjct: 24 TGPIDAHDPFDSGRRTAFVDE--------QGIAAGIVEFGTALSVEAYPYTEXLVXHRGS 75
Query: 307 VKILSMTDEL 316
V + S TD +
Sbjct: 76 VTLTSGTDSV 85
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 220 LGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLK 277
L DL + + K+ +L + V+ +L + T+ GLL N + GG+FV+ + R LK
Sbjct: 38 LEADLPNYKSKILRL-LCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLK 94
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 220 LGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLK 277
L DL + + K+ +L + V+ +L + T+ GLL N + GG+FV+ + R LK
Sbjct: 57 LEADLPNYKSKILRL-LCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLK 113
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 220 LGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLK 277
L DL + + K+ +L + V+ +L + T+ GLL N + GG+FV+ + R LK
Sbjct: 38 LEADLPNYKSKILRL-LCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLK 94
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 220 LGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLK 277
L DL + + K+ +L + V+ +L + T+ GLL N + GG+FV+ + R LK
Sbjct: 38 LEADLPNYKSKILRL-LCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLK 94
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 29 LNQTAASSLEKVSWNDVIQMGEQVSKKATVV-----GMLWTGETPEAKAIEENMAEYFNM 83
L Q +S ++ + ND+ + E++SKK V G +W G + ++ N+A+ M
Sbjct: 36 LKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGM 95
Query: 84 LQGFI 88
+ I
Sbjct: 96 MATII 100
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 215 SSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHEN 261
S L+ LG+D + + + Q +G S +V K +RT K EN
Sbjct: 104 SFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPEN 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,760,869
Number of Sequences: 62578
Number of extensions: 372276
Number of successful extensions: 788
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 26
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)