BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017703
(367 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U4I3|CCDB1_XENLA Cyclin-D1-binding protein 1 homolog OS=Xenopus laevis GN=ccndbp1
PE=2 SV=2
Length = 331
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 110/252 (43%), Gaps = 28/252 (11%)
Query: 99 GPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTP 158
G TL ++ ++ V++ + +L+ + L + + + L+ G+VWEAC +K P
Sbjct: 93 GITLRKTVREAIADVIEGTIQLV--EVILSSRIQSLSQAQLV--STGSVWEACDQWEKLP 148
Query: 159 ATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLD 218
N+ A+ ++ +KD + E+++ + D ++ DD A
Sbjct: 149 KDNLAAVQVIVSGYLDVVKDAIEEVEQAQTDGEDPFSDIPEDDEIGARGNQD-------- 200
Query: 219 ELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKL 278
S + ++ +G++ +K++I G +K D + V L+ L+ +
Sbjct: 201 ---TYWSEADRRLMAPCLGLMKASKACLKKVI----GAIKAHGKADTAEHVAQLDDLVDV 253
Query: 279 CQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLR 338
Q + +DEL S+YPP + ++ + K+ S+ K+V + SS C
Sbjct: 254 TQEVSPSVDELALSMYPPMNHATVRLNAAKLSSVL----KKVLAITRSS----HVCPEAE 305
Query: 339 SSLKQ-MDSEVD 349
S+ Q +DS VD
Sbjct: 306 STWIQFLDSAVD 317
>sp|Q4R809|CCDB1_MACFA Cyclin-D1-binding protein 1 OS=Macaca fascicularis GN=CCNDBP1 PE=2
SV=1
Length = 332
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 37/285 (12%)
Query: 42 WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
W + + VS++AT + +++ P + ++ + ++ FI + + G
Sbjct: 53 WRRLNEAAVTVSREATTLTTVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGI 112
Query: 101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
TL + + +VD +LM + SIT +N D + Y +VW AC + + P
Sbjct: 113 TLRKLVRGATLDIVDGMAQLMEVLSITPTQSPENND----LISY-NSVWVACQQMPQIPR 167
Query: 160 TNITAIGRAMTQVAVSMKDVLREM----KELKPSS-----SDQNNEASHDDSAKADSEHQ 210
N A +T+ +KD EM +E P S +D+NN +H+D
Sbjct: 168 DNKAAALLMLTKNVDFVKDAHEEMERAVEECDPYSGLLNDTDENNSDNHND--------- 218
Query: 211 EDD---NSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGK 267
EDD S +L +E+ + LA+ S K ++ I L+ D
Sbjct: 219 EDDVLGFPSNQDLYWSEDDQELIIPCLALVRAS------KACLKKIRILVAENGKKDQ-- 270
Query: 268 FVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSM 312
V L+ ++ + I +D+L S+YPP ++ S K++S+
Sbjct: 271 -VAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINSAKLVSV 314
>sp|O95273|CCDB1_HUMAN Cyclin-D1-binding protein 1 OS=Homo sapiens GN=CCNDBP1 PE=1 SV=2
Length = 360
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 27/280 (9%)
Query: 42 WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
W + + VS++AT + ++++ P + ++ + ++ FI + + G
Sbjct: 53 WRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGI 112
Query: 101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
TL + + +VD +LM + S+T +N D + Y +VW AC + + P
Sbjct: 113 TLRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENND----LISY-NSVWVACQQMPQIPR 167
Query: 160 TNITAIGRAMTQVAVSMKDVLREM----KELKPSSSDQNNEASHDDSAKADSEHQEDD-- 213
N A +T+ +KD EM +E P S N+ ++ +D+ + EDD
Sbjct: 168 DNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENN----SDNHNHEDDVL 223
Query: 214 -NSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTL 272
S +L +E+ + LA+ S K ++ I L+ D V L
Sbjct: 224 GFPSNQDLYWSEDDQELIIPCLALVRAS------KACLKKIRMLVAENGKKDQ---VAQL 274
Query: 273 ERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSM 312
+ ++ + I +D+L S+YPP ++ S K++S+
Sbjct: 275 DDIVDISDEISPSVDDLALSIYPPMCHLTVRINSAKLVSV 314
>sp|Q5RFN4|CCDB1_PONAB Cyclin-D1-binding protein 1 OS=Pongo abelii GN=CCNDBP1 PE=2 SV=1
Length = 360
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 37/285 (12%)
Query: 42 WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
W + + VS++AT + +++ P A+ ++ + ++ FI + + G
Sbjct: 53 WRRLNEAAVTVSREATTLTTVFSQLPLPSAQETQKFCEQVHAAIKAFIAVYYLLPKDQGI 112
Query: 101 TLSLSIHASVKQVVDSSFKLM-MESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPA 159
TL + + +VD +LM + SIT +N + + Y +VW AC + P
Sbjct: 113 TLRKLVRGATLDIVDGMAQLMEVLSITPTQSPENNE----LISY-NSVWVACQQMPHIPR 167
Query: 160 TNITAIGRAMTQVAVSMKDVLREM----KELKPSS-----SDQNNEASHDDSAKADSEHQ 210
N A +T+ +KD EM +E P S +++NN +H+D
Sbjct: 168 DNKAAALLMLTKNVDFVKDAHEEMERAVEECDPYSGLLNDTEENNSDNHND--------- 218
Query: 211 EDD---NSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGK 267
EDD S +L +E+ + LA+ S K ++ I L+ D
Sbjct: 219 EDDVLGFPSNQDLYWSEDDQELIIPCLALVRAS------KACLKKIRILVAENGKKDQ-- 270
Query: 268 FVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSM 312
V L+ ++ + I +D+L S+YPP ++ S K++S+
Sbjct: 271 -VAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINSAKLVSV 314
>sp|A3KNI7|CCDB1_DANRE Cyclin-D1-binding protein 1 homolog OS=Danio rerio GN=ccndbp1 PE=2
SV=2
Length = 344
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 17/231 (7%)
Query: 99 GPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTP 158
G TL S+ + +V++ +L+ + L + + +E L G+VW AC + P
Sbjct: 104 GVTLRRSVRDATAEVLEGLVQLL--DVILSSPGQSLSQEQLTS--TGSVWAACDHFDQIP 159
Query: 159 ATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLD 218
N +A+ ++ +KD L EM++ S D + DD +D S
Sbjct: 160 KDNRSAVLAVLSSCVGLVKDALEEMQQALAESQDPFGDVLDDDDDDEGGRGNQDRYWSAS 219
Query: 219 ELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKL 278
+ QL IG +L +R ++ ++H + + + L+ L
Sbjct: 220 D------------RQL-IGQCEGLLKASAASLRKLSSAVRHNAQLETEQEIAQLDDLADA 266
Query: 279 CQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEA 329
+ +D+L SLYPP + + ++ ++ ++ +L S + +EA
Sbjct: 267 AAHVSPCVDDLALSLYPPVDRAAVEQNVCRLAAVLKKLLDITRSSHVCAEA 317
>sp|Q9Y7Z4|COG3_SCHPO Conserved oligomeric Golgi complex subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cog3 PE=3 SV=1
Length = 735
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 194 NNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTI 253
NN S S K E E S E+ +LS++EM+ +++A GI + + ++ +
Sbjct: 123 NNIESTLLSMKEKFESSEKKLSEFSEMCENLSTDEMRFSEIADGIRKGLTIFAP--LKEL 180
Query: 254 TGLLKHENPDDGGK 267
T + +H PD GK
Sbjct: 181 TRVFRHPPPDFAGK 194
>sp|Q01329|PTA1_YEAST Pre-tRNA-processing protein PTA1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PTA1 PE=1 SV=1
Length = 785
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 106 IHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKT--PATNIT 163
++ ++ ++ +S+ L+++ + + + D+ ++ ++V + W L+ T T++
Sbjct: 94 VYKNIVLIMCASYPLVLDLVAKTSNQEMFDQLCMLKKFVLSHWRTAYPLRATVDDETDVE 153
Query: 164 A--------IGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNS 215
IG + + + VL + K PS ++ N+ D+ + E +
Sbjct: 154 QWLAQIDQNIGVKLATIKFISEVVLSQTKS--PSGNEINSSTIPDNHPVLNKPALESEAK 211
Query: 216 SL-DELGNDLSSEEMKVAQLAIGIVSDMLVVIKE----LIRTITGLLK 258
L D L N L E+ V+ + IGI++ + VIK IR ++GLL+
Sbjct: 212 RLLDMLLNYLIEEQYMVSSVFIGIINSLSFVIKRRPQTTIRILSGLLR 259
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 176 MKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGN 222
M + E+KEL P D N + DDS D+ Q DD S + G+
Sbjct: 251 MDQLHEELKELIPEPEDPNQAVAMDDSPDEDNHSQSDDFQSCESCGS 297
>sp|Q2KIZ9|CCDB1_BOVIN Cyclin-D1-binding protein 1 OS=Bos taurus GN=CCNDBP1 PE=2 SV=1
Length = 358
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 118/286 (41%), Gaps = 26/286 (9%)
Query: 42 WNDVIQMGEQVSKKATVVGMLWTG-ETPEAKAIEENMAEYFNMLQGFILLSHGSTVGAGP 100
W + VS++AT + + ++ P + + + ++ I + + G
Sbjct: 53 WRRFNEAAVTVSREATTLTVAFSRLPLPSPQETQRFCEQVHAAIKAIIGVYYLFPKDQGI 112
Query: 101 TLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPAT 160
TL + ++ +VD +L+ LY E+L+ +VW+AC + + P
Sbjct: 113 TLRKLVRSATLDIVDDMAQLVE---ALYINPAQSSPENLI--SYNSVWDACQHVPQIPKD 167
Query: 161 NITAIGRAMTQVAVSMKDVLREM----KELKPSSSDQNNEASHDDSAKADSEHQEDDNSS 216
N A +T+ +KD EM +E P N+ +DS +D+ ED
Sbjct: 168 NKAAALSVLTKSVDLVKDAHEEMEQAVEECDPYCGLLND--IEEDS--SDNHVDEDILGC 223
Query: 217 LDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGK-FVDTLERL 275
+ + S E+ ++ + + +K++ ++ ++G K V L+ +
Sbjct: 224 PNNRDSYWSEEDQELIIPCLALARASKACLKKIRLSVA--------ENGKKDQVAQLDDI 275
Query: 276 LKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVE 321
+ + I +D+L S+YPP ++ S K+ S+ L+K +E
Sbjct: 276 VDISDEISPSVDDLALSIYPPVCPLTVRINSAKLASV---LKKALE 318
>sp|A3MS51|Y028_PYRCJ MEMO1 family protein Pcal_0028 OS=Pyrobaculum calidifontis (strain
JCM 11548 / VA1) GN=Pcal_0028 PE=3 SV=1
Length = 281
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 172 VAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKV 231
+A ++++ R + L +SSD N+ HD + K D + LDE G + +
Sbjct: 174 IAKALREYKRRVYLL--ASSDFNHYEPHDVTVKKD-DMAIGKILELDEAGLFDVASRFDI 230
Query: 232 AQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVD 270
+ IG ++ ++V KEL + LLKH D + D
Sbjct: 231 SICGIGPIASVIVAAKELGFSNAALLKHATSGDTSGYRD 269
>sp|Q8ZYE1|Y818_PYRAE MEMO1 family protein PAE0818 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=PAE0818 PE=3 SV=1
Length = 281
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 165 IGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDL 224
+GRA +A ++K+ R+ + +SSD N+ HD + + D E LDE G
Sbjct: 170 LGRA---IAKALKEYGRKAYVI--ASSDFNHYEPHDITTRKD-EMAISKILKLDEAGLFE 223
Query: 225 SSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVD 270
S + ++ IG + ++ KEL LLKH D + D
Sbjct: 224 ISSKFDISICGIGPIGVLIAAAKELGYINVTLLKHATSGDTSGYKD 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,993,663
Number of Sequences: 539616
Number of extensions: 4907417
Number of successful extensions: 20590
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 20472
Number of HSP's gapped (non-prelim): 189
length of query: 367
length of database: 191,569,459
effective HSP length: 119
effective length of query: 248
effective length of database: 127,355,155
effective search space: 31584078440
effective search space used: 31584078440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)