Query 017703
Match_columns 367
No_of_seqs 127 out of 141
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13324 GCIP: Grap2 and cycli 100.0 2.5E-59 5.3E-64 449.6 27.2 273 42-320 1-275 (275)
2 PF13324 GCIP: Grap2 and cycli 75.1 81 0.0018 30.3 16.3 44 304-347 225-274 (275)
3 PF12205 GIT1_C: G protein-cou 71.8 64 0.0014 27.7 11.8 77 269-346 34-120 (123)
4 COG0497 RecN ATPase involved i 70.3 1.4E+02 0.0029 32.2 14.6 146 165-346 179-339 (557)
5 PF12732 YtxH: YtxH-like prote 68.3 51 0.0011 25.2 9.5 40 82-126 12-51 (74)
6 PF13047 DUF3907: Protein of u 62.1 53 0.0012 29.0 8.1 114 12-127 13-138 (148)
7 PF04931 DNA_pol_phi: DNA poly 57.9 14 0.0003 41.1 4.8 27 142-170 607-633 (784)
8 PF06694 Plant_NMP1: Plant nuc 55.0 29 0.00064 34.2 5.9 60 262-323 167-227 (325)
9 COG1017 Hmp Hemoglobin-like fl 54.4 1.4E+02 0.003 26.4 9.3 22 223-244 1-22 (150)
10 PF03623 Focal_AT: Focal adhes 53.8 1.2E+02 0.0027 26.5 9.0 56 267-323 36-91 (139)
11 KOG0980 Actin-binding protein 53.6 3.8E+02 0.0083 30.4 24.5 299 16-351 595-929 (980)
12 PF05470 eIF-3c_N: Eukaryotic 52.9 83 0.0018 34.0 9.5 44 146-192 91-137 (595)
13 COG2317 Zn-dependent carboxype 46.4 2.9E+02 0.0062 29.2 11.6 149 152-328 30-195 (497)
14 PF06013 WXG100: Proteins of 1 46.1 1.2E+02 0.0026 22.4 8.5 27 324-350 43-69 (86)
15 PLN03094 Substrate binding sub 45.5 2.1E+02 0.0046 29.1 10.5 57 267-323 290-346 (370)
16 PRK10869 recombination and rep 45.2 4.1E+02 0.0089 28.4 13.7 72 267-345 265-337 (553)
17 KOG1991 Nuclear transport rece 44.6 40 0.00088 38.1 5.6 34 157-190 855-888 (1010)
18 PF10498 IFT57: Intra-flagella 42.6 2.1E+02 0.0046 28.9 10.0 52 299-350 296-353 (359)
19 KOG3046 Transcription factor, 42.1 1.5E+02 0.0032 26.1 7.5 52 268-319 10-63 (147)
20 KOG1824 TATA-binding protein-i 40.0 6.5E+02 0.014 29.2 13.8 100 240-343 365-472 (1233)
21 TIGR02284 conserved hypothetic 38.5 2E+02 0.0043 24.8 8.0 46 267-312 30-76 (139)
22 PF04420 CHD5: CHD5-like prote 37.5 79 0.0017 28.1 5.5 66 284-351 20-85 (161)
23 PF10280 Med11: Mediator compl 36.7 2.1E+02 0.0045 24.0 7.7 33 326-363 42-74 (117)
24 PF02074 Peptidase_M32: Carbox 36.5 2E+02 0.0044 30.4 9.2 147 151-324 29-192 (494)
25 PF06685 DUF1186: Protein of u 36.3 3.1E+02 0.0066 26.4 9.6 29 161-189 216-244 (249)
26 PRK13289 bifunctional nitric o 35.8 2.5E+02 0.0054 28.0 9.5 19 224-242 2-20 (399)
27 PF05482 Serendipity_A: Serend 35.2 5.8E+02 0.012 27.4 12.0 89 267-356 137-230 (552)
28 cd07675 F-BAR_FNBP1L The F-BAR 35.1 2.3E+02 0.0049 27.3 8.5 70 271-343 74-149 (252)
29 PF01044 Vinculin: Vinculin fa 34.5 7.7E+02 0.017 28.4 16.3 124 224-349 98-247 (968)
30 PF01865 PhoU_div: Protein of 30.9 4E+02 0.0088 24.0 12.2 62 288-349 66-135 (214)
31 PF05791 Bacillus_HBL: Bacillu 29.8 4.2E+02 0.0091 23.9 9.2 58 229-293 76-133 (184)
32 cd05128 RasGAP_GAP1_like The G 29.6 5.6E+02 0.012 25.3 12.4 67 278-344 96-170 (315)
33 PF10759 DUF2587: Protein of u 27.8 2.5E+02 0.0054 25.1 6.7 55 307-365 33-87 (169)
34 cd07909 YciF YciF bacterial st 26.5 4.3E+02 0.0093 23.2 8.2 83 267-350 3-87 (147)
35 PF04108 APG17: Autophagy prot 26.2 7.2E+02 0.016 25.4 22.6 166 7-189 74-266 (412)
36 PF10157 DUF2365: Uncharacteri 26.1 2.2E+02 0.0047 25.3 6.2 77 269-345 51-129 (149)
37 PF09537 DUF2383: Domain of un 25.4 1.6E+02 0.0034 23.8 5.0 12 317-328 51-62 (111)
38 PF05659 RPW8: Arabidopsis bro 25.1 4.7E+02 0.01 22.9 9.4 82 268-356 32-118 (147)
39 cd07603 BAR_ACAPs The Bin/Amph 24.7 2.5E+02 0.0055 25.8 6.7 49 299-347 4-52 (200)
40 KOG2189 Vacuolar H+-ATPase V0 24.3 1.5E+02 0.0033 33.0 5.8 57 283-339 239-304 (829)
41 PF04912 Dynamitin: Dynamitin 23.8 7.6E+02 0.016 24.9 12.0 77 267-350 292-368 (388)
42 PF06320 GCN5L1: GCN5-like pro 23.5 3E+02 0.0065 23.3 6.4 39 304-342 47-85 (121)
43 PF04546 Sigma70_ner: Sigma-70 23.2 47 0.001 30.7 1.6 28 267-294 107-137 (211)
44 PF00015 MCPsignal: Methyl-acc 22.6 5.3E+02 0.012 22.7 9.4 29 161-189 76-104 (213)
45 cd01820 PAF_acetylesterase_lik 22.0 1.7E+02 0.0037 26.4 5.0 24 321-344 190-213 (214)
46 PF08618 Opi1: Transcription f 21.7 5E+02 0.011 27.0 8.7 37 222-258 223-259 (427)
47 PF00790 VHS: VHS domain; Int 21.2 3.6E+02 0.0079 22.9 6.7 52 228-279 22-73 (140)
48 PF03487 IL13: Interleukin-13; 21.2 89 0.0019 21.6 2.1 29 57-85 12-41 (43)
49 COG4842 Uncharacterized protei 21.0 4.4E+02 0.0096 21.1 7.0 26 324-349 46-71 (97)
50 cd07604 BAR_ASAPs The Bin/Amph 20.8 3.8E+02 0.0082 25.1 7.1 49 300-348 5-53 (215)
51 cd07639 BAR_ACAP1 The Bin/Amph 20.6 2.2E+02 0.0047 26.5 5.3 45 300-344 5-49 (200)
52 cd07667 BAR_SNX30 The Bin/Amph 20.5 2.3E+02 0.0051 27.1 5.7 37 287-323 37-77 (240)
53 cd07666 BAR_SNX7 The Bin/Amphi 20.5 3E+02 0.0066 26.3 6.5 41 281-321 34-78 (243)
54 cd05135 RasGAP_RASAL Ras GTPas 20.2 8.7E+02 0.019 24.2 12.1 42 302-343 144-186 (333)
No 1
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=100.00 E-value=2.5e-59 Score=449.55 Aligned_cols=273 Identities=36% Similarity=0.604 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCCC-CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 017703 42 WNDVIQMGEQVSKKATVVGMLWTGET-PEAKAIEENMAEYFNMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKL 120 (367)
Q Consensus 42 ~~~l~~~a~~l~~~aTKlsll~~~~P-ps~~~~~~~~~~l~~~l~~~~~l~~~~~~g~g~tl~~~i~~~~~~vv~~~~~L 120 (367)
|++|.+++++||+||||+||+|++.| |++++++++|+++++++++|+++||+.++|+|+||+++|+..+++||+++.+|
T Consensus 1 w~~l~~~~~~~s~~aTkl~l~~~~~~~P~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~G~tL~~~i~~~v~~lv~~~~~L 80 (275)
T PF13324_consen 1 WEELVKAAKALSHEATKLSLVFSKPPLPSPEEAQELCESLFNALLGLLSLYHGLPKGQGPTLRKEIRSAVKSLVDSSIQL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSS---HHHHHHHHHHHHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCcHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996333 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcccccCcccchhhhHHHhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccCC
Q 017703 121 MMESITLYAGSDNKDKEHLMPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHD 200 (367)
Q Consensus 121 ~~~l~~~~~~s~~~~~~~~~l~stG~VWeaCD~l~~lp~~N~~av~~~~~~~~~lvkDaleEleE~~e~~~~~~~e~s~d 200 (367)
++++++.+ ++.++++++.++++||+||+|||++.++|++|++||+|+|++++++||||++||+||.+++...+++ |
T Consensus 81 ~~~~~~~~-~s~~~~~~~~~~~~tG~VWeaCd~l~~lp~~n~~av~~~~~~~~~lvkDa~~El~E~~~~~~~~~~~---d 156 (275)
T PF13324_consen 81 VEELVSAY-GSSSQSEKNEVLQSTGRVWEACDQLKKLPKDNKVAVLRRLKQSRDLVKDALEELEEWDEEPSLDDSE---D 156 (275)
T ss_dssp HHHHH--------------------HHHHHHHTTTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------
T ss_pred HHHHHHhc-cCcccCccchhHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---C
Confidence 99999976 6677788899999999999999999999999999999999999999999999999999865211010 1
Q ss_pred CccccccCc-ccCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCchhhHHHHHHHHH
Q 017703 201 DSAKADSEH-QEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLC 279 (367)
Q Consensus 201 ~~~~~d~~~-d~de~~ddd~~~~~~seee~~~~~~~~~lvk~~~~~lK~lir~i~~~lk~~~~~~~~~~v~~LD~L~~~~ 279 (367)
++ .|.++ |+|+.+++++.+.+||++|++++++++++++.+.+++|.+++.|++++|...+..++.++++||+|++++
T Consensus 157 ~~--~d~~~~ddd~~~~~~~~d~~~seee~~~~~~~~~l~~~~~~~lk~~~~~i~~~~k~~~~~~~~~~v~~Ld~L~~~~ 234 (275)
T PF13324_consen 157 EF--SDEEDDDDDEDDDDFGDDEDLSEEEMELAKAVLGLLKASLAVLKKLLRAITKLLKSEKPSDSPEQVAQLDKLLDLC 234 (275)
T ss_dssp ---------------------TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHH
T ss_pred cc--ccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccChhhHHHHHHHHHHH
Confidence 11 01111 1121122333344699999999999999999999999998899998887666766778999999999999
Q ss_pred hhhhhhhHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017703 280 QGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEV 320 (367)
Q Consensus 280 ~~i~~~VDeL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i 320 (367)
++|+++|||||++||||+|+++|+.++.+|.+++++|+++|
T Consensus 235 ~~i~~~VDel~~slYpP~d~~~v~~~~~~L~~~l~~~l~~~ 275 (275)
T PF13324_consen 235 QEISPSVDELASSLYPPQDPDEVRAAAAKLSSVLKKMLKIV 275 (275)
T ss_dssp HHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999986
No 2
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=75.07 E-value=81 Score=30.30 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh----c--CCcHHHHHHHHHHHHHHHHHHhh
Q 017703 304 AGSVKILSMTDELQKEVESF----N--SSSEAFIQACNGLRSSLKQMDSE 347 (367)
Q Consensus 304 ~~~~~L~~~l~k~~~~i~~~----~--~~~~~~~~~~~~~~~~~~~~~~~ 347 (367)
..+.+|....+++...|-.+ . -.++.......++.+.+++|-.+
T Consensus 225 ~~Ld~L~~~~~~i~~~VDel~~slYpP~d~~~v~~~~~~L~~~l~~~l~~ 274 (275)
T PF13324_consen 225 AQLDKLLDLCQEISPSVDELASSLYPPQDPDEVRAAAAKLSSVLKKMLKI 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555554444433 2 35667888888888888877653
No 3
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=71.79 E-value=64 Score=27.67 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHhhhhhhhHHhHhccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---------HHHHHHHHHHH
Q 017703 269 VDTLERLLKLCQGIGVQIDELGASLYPPQ-ELSVIKAGSVKILSMTDELQKEVESFNSSS---------EAFIQACNGLR 338 (367)
Q Consensus 269 v~~LD~L~~~~~~i~~~VDeL~sslYpp~-d~~~v~~~~~~L~~~l~k~~~~i~~~~~~~---------~~~~~~~~~~~ 338 (367)
....++...++..|...|.++++- ||+- ..+.++..+..|.+....+..+=++..+.. .......=.+-
T Consensus 34 ~~~~~s~~pcae~I~~aV~~m~~L-fP~~~~~e~vr~~L~~L~~~~~~Lq~eC~~~~~~~~~~~~~~~t~qvi~~AYdIA 112 (123)
T PF12205_consen 34 EGRHDSFAPCAERIRSAVTEMAAL-FPKDPRSETVRSSLRQLTSSAYRLQAECQKAQPEDDAVDIQLVTQQVIQCAYDIA 112 (123)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHT-S-SSB--HHHHHHHHHHHHHHHHHHHHHHS---S--SS-HHHHHHHHHHHHHHHH
T ss_pred hcccccchhHHHHHHHHHHHHHHh-CCCccCChHHHHHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHHHHHH
Confidence 346778889999999999999865 6444 377899999999999999888887764442 23444444566
Q ss_pred HHHHHHHh
Q 017703 339 SSLKQMDS 346 (367)
Q Consensus 339 ~~~~~~~~ 346 (367)
++.|+|..
T Consensus 113 KAaKqLvT 120 (123)
T PF12205_consen 113 KAAKQLVT 120 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 67777654
No 4
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.29 E-value=1.4e+02 Score=32.16 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCccccccCCCccccccCcccCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 017703 165 IGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDMLV 244 (367)
Q Consensus 165 v~~~~~~~~~lvkDaleEleE~~e~~~~~~~e~s~d~~~~~d~~~d~de~~ddd~~~~~~seee~~~~~~~~~lvk~~~~ 244 (367)
-.+...+-.++++=.++|+++..+.+. | ++. =.+++.++.....+...+..
T Consensus 179 ~~~e~~~~~d~L~fq~~Ele~~~l~~g----E--------------------~e~-----L~~e~~rLsn~ekl~~~~~~ 229 (557)
T COG0497 179 KERERAQRADLLQFQLEELEELNLQPG----E--------------------DEE-----LEEERKRLSNSEKLAEAIQN 229 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCc----h--------------------HHH-----HHHHHHHHhhHHHHHHHHHH
Confidence 345566778899999999999887652 1 000 12344444444444444444
Q ss_pred HHHHH---------HHHH---Hhhhhc--cCCCCCCchhhHHHHHHHHHhhhhhhhHHhHhcc-CCCCCHHHHHHHHHHH
Q 017703 245 VIKEL---------IRTI---TGLLKH--ENPDDGGKFVDTLERLLKLCQGIGVQIDELGASL-YPPQELSVIKAGSVKI 309 (367)
Q Consensus 245 ~lK~l---------ir~i---~~~lk~--~~~~~~~~~v~~LD~L~~~~~~i~~~VDeL~ssl-Ypp~d~~~v~~~~~~L 309 (367)
.+..+ ...| ...+.. +.+..-......|+..+....++...+......+ |-|...+++.+.+..|
T Consensus 230 a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L 309 (557)
T COG0497 230 ALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFAL 309 (557)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 44311 1112 122211 1111112345566666666666666667766666 5555555555555544
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHh
Q 017703 310 LSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDS 346 (367)
Q Consensus 310 ~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (367)
....+++++.+++..++..+++.-|.+|+.
T Consensus 310 -------~~l~RKY~~~~~~l~~~~~~~~~el~~L~~ 339 (557)
T COG0497 310 -------KSLARKYGVTIEDLLEYLDKIKEELAQLDN 339 (557)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHHHHHhhh
Confidence 344456778888888888888777666654
No 5
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=68.28 E-value=51 Score=25.15 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017703 82 NMLQGFILLSHGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESIT 126 (367)
Q Consensus 82 ~~l~~~~~l~~~~~~g~g~tl~~~i~~~~~~vv~~~~~L~~~l~~ 126 (367)
.+..++++.|.. |+-+|+.|...+..+-+.+..+.+.+..
T Consensus 12 Ga~~glL~aP~s-----G~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 12 GAAAGLLFAPKS-----GKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666654 9999999998888888887666666543
No 6
>PF13047 DUF3907: Protein of unknown function (DUF3907)
Probab=62.11 E-value=53 Score=28.98 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=77.9
Q ss_pred HHHHhhhhhchHHHHHhhhccccC--CcCcchHHHHHHHHHHHHhhhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 017703 12 IRTLNNHLNNIHETLQVLNQTAAS--SLEKVSWNDVIQMGEQVSKKATVVGMLWTGETPEAKAIEENMAEYFNMLQGFIL 89 (367)
Q Consensus 12 ~~~l~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~a~~l~~~aTKlsll~~~~Pps~~~~~~~~~~l~~~l~~~~~ 89 (367)
..-|+.|+| .-||.-+....+. ..=...+..|+.+..----..-+++++...+||......+.+-.++...+.-+.
T Consensus 13 v~~ie~fLN--~~TL~~L~~e~~~~~~yY~~~Ls~lRrLlVf~E~~~e~~~v~Lr~~~F~~~aAEktLY~vYHqCI~eFF 90 (148)
T PF13047_consen 13 VTEIESFLN--ETTLPSLLEESPGEEAYYKGLLSDLRRLLVFCEEGYEACGVLLRREPFRKEAAEKTLYKVYHQCIEEFF 90 (148)
T ss_pred HHHHHHHHh--HhhHHHHHhcCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHc
Confidence 456777888 6777666654422 122345667777776666777899999986777777777877777666554444
Q ss_pred hccCCC----------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017703 90 LSHGST----------VGAGPTLSLSIHASVKQVVDSSFKLMMESITL 127 (367)
Q Consensus 90 l~~~~~----------~g~g~tl~~~i~~~~~~vv~~~~~L~~~l~~~ 127 (367)
+|++.. .....-|++.+-..+++++.++...++++..-
T Consensus 91 ~PK~d~w~EdsR~AYTGknaI~Fr~~~~~~l~~l~~~le~~Fq~mREE 138 (148)
T PF13047_consen 91 YPKNDVWYEDSRSAYTGKNAIRFRQEPPRSLKDLMLSLEKIFQEMREE 138 (148)
T ss_pred CCCcccccccchhhccCCceeeeecCCChHHHHHHHHHHHHHHHHHHH
Confidence 564432 12247789999899999999988888877653
No 7
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=57.90 E-value=14 Score=41.06 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=13.9
Q ss_pred chhhhHHHhhhhhhcCCcccHHHHHHHHH
Q 017703 142 QYVGAVWEACSALKKTPATNITAIGRAMT 170 (367)
Q Consensus 142 ~stG~VWeaCD~l~~lp~~N~~av~~~~~ 170 (367)
..+..||.+. ...+-..+...+.+.+.
T Consensus 607 ~~~~~vf~~~--~~~~t~~~l~~ll~vl~ 633 (784)
T PF04931_consen 607 KVSEQVFEAF--CPHLTESGLQLLLDVLD 633 (784)
T ss_pred HHHHHHHHHH--HhhcCHHHHHHHHHHhc
Confidence 4566677764 23344445544444443
No 8
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=55.02 E-value=29 Score=34.16 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=41.9
Q ss_pred CCCCCchhhHHHHHHHHHhhhhhhhHHhHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017703 262 PDDGGKFVDTLERLLKLCQGIGVQIDELGASL-YPPQELSVIKAGSVKILSMTDELQKEVESF 323 (367)
Q Consensus 262 ~~~~~~~v~~LD~L~~~~~~i~~~VDeL~ssl-Ypp~d~~~v~~~~~~L~~~l~k~~~~i~~~ 323 (367)
+++.++....++.+.+..+.....+++|++.. |-| |.+.+ +...+|-..+..++.+.+.+
T Consensus 167 lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~y~p-d~~~~-e~~~~Lr~~L~tflq~~~~F 227 (325)
T PF06694_consen 167 LPDVSELEKKASELSKQLQSLQQQVAELASKHPYNP-DEEYV-EKESQLRLELETFLQTAAGF 227 (325)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-chhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 45656788888999999999999999999997 723 43333 33333666666666666554
No 9
>COG1017 Hmp Hemoglobin-like flavoprotein [Energy production and conversion]
Probab=54.38 E-value=1.4e+02 Score=26.41 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 017703 223 DLSSEEMKVAQLAIGIVSDMLV 244 (367)
Q Consensus 223 ~~seee~~~~~~~~~lvk~~~~ 244 (367)
+||++.++++++.+++++....
T Consensus 1 mLs~~~~~iIKaTvPlL~~~G~ 22 (150)
T COG1017 1 MLSEETIAIIKATVPLLEEHGE 22 (150)
T ss_pred CCCHHHHHHHHHhhHHHHhcch
Confidence 3789999999999999865433
No 10
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=53.78 E-value=1.2e+02 Score=26.55 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=47.3
Q ss_pred chhhHHHHHHHHHhhhhhhhHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017703 267 KFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESF 323 (367)
Q Consensus 267 ~~v~~LD~L~~~~~~i~~~VDeL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i~~~ 323 (367)
+++...-.+-..++.+-..||++...| |+....+|+-+=.-|++.+.++...++..
T Consensus 36 ~y~~~VK~VG~~Lr~Ll~sVd~~~~~l-~~s~~~EVema~klL~~DM~eLi~~mkla 91 (139)
T PF03623_consen 36 EYVDLVKNVGLALRDLLTSVDQILPSL-PSSVRREVEMAHKLLSKDMAELISAMKLA 91 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGS-HTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777778888888999998874 89999999999889999999999888765
No 11
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.64 E-value=3.8e+02 Score=30.42 Aligned_cols=299 Identities=13% Similarity=0.128 Sum_probs=147.7
Q ss_pred hhhhhchHHHHHhhhccccCCcCcchHHHHHHHHHHHHhhhhhhhhcccCCC----CCHHHHHHHHHHHHHHHHHHHHhc
Q 017703 16 NNHLNNIHETLQVLNQTAASSLEKVSWNDVIQMGEQVSKKATVVGMLWTGET----PEAKAIEENMAEYFNMLQGFILLS 91 (367)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~a~~l~~~aTKlsll~~~~P----ps~~~~~~~~~~l~~~l~~~~~l~ 91 (367)
..-.+.|..++..++++... ..-++=+-|...+...+..+|-+.-.|. .+ +..+.+.-.+.-+...+...+...
T Consensus 595 ~~~~q~lq~al~~ld~P~~~-~~~~~p~~Llst~~~~s~n~~~~e~~~~-~yla~~~d~s~~i~~v~~fs~~~~~~~~na 672 (980)
T KOG0980|consen 595 ASGIQALQNALYQLDSPLHW-RCLTSPDFLLSTAENASVNATQFETSFN-NYLADGDDASDLIHCVTLFSHLISTTINNA 672 (980)
T ss_pred HHHHHHHHHHHHhcCCCccc-CcCCCHHHHHHHHHHHHHHHHHHHHHHh-hhcCCchhhhhHhhHHHHHHHHHHHHHhcc
Confidence 33455566677766665544 2334445677778888888888888885 44 334443222211111111111100
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCcccchhhhHHHhhhhh-hc-CCc--ccH----H
Q 017703 92 HGSTVGAGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHLMPQYVGAVWEACSAL-KK-TPA--TNI----T 163 (367)
Q Consensus 92 ~~~~~g~g~tl~~~i~~~~~~vv~~~~~L~~~l~~~~~~s~~~~~~~~~l~stG~VWeaCD~l-~~-lp~--~N~----~ 163 (367)
.+..+.+++-=...|-..++..++...+++..+.+. +..+ ...-..+-.+-..-.++ .+ +|+ |+. +
T Consensus 673 ~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~--~al~----~~d~~~l~~~lq~~~~~~eel~~~~~di~~e~l~ 746 (980)
T KOG0980|consen 673 KATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSE--NALE----RGDEMLLRQYLQTLNQLGEELLPKELDIDQELLG 746 (980)
T ss_pred hhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhh--hHHH----hhHHHHHHHHHHHHHHHhHHhccccchhhHHHHH
Confidence 000122344446677777777777776666666542 1110 00000111111111111 11 243 333 2
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccCCCccccccCcccCCCCCcccCCCCCCHHHHHHHHHHHHHHHHH
Q 017703 164 -AIGRAMTQVAVSMKDVLREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEMKVAQLAIGIVSDM 242 (367)
Q Consensus 164 -av~~~~~~~~~lvkDaleEleE~~e~~~~~~~e~s~d~~~~~d~~~d~de~~ddd~~~~~~seee~~~~~~~~~lvk~~ 242 (367)
.|-..|.....-++||+.+|++...-+-+ | +++ -..+ --..++..|..++++.
T Consensus 747 ~lld~ema~t~aAI~~A~~rie~~~~Kar~-----s-s~~-------------~~Le-------Vne~iL~~ct~lm~aI 800 (980)
T KOG0980|consen 747 NLLDIEMAETDAAIEDAVSRIEAIAAKARE-----S-SSG-------------VRLE-------VNESILSACTALMEAI 800 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----c-CCC-------------ceee-------ccHHHHHHHHHHHHHH
Confidence 24556777888899999999998765420 0 000 0111 1235888888888888
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCC-----chhhHHHHHHHHHhhh-------hhhhHHhHhccCCCCCHHHHHHHHHHHH
Q 017703 243 LVVIKELIRTITGLLKHENPDDGG-----KFVDTLERLLKLCQGI-------GVQIDELGASLYPPQELSVIKAGSVKIL 310 (367)
Q Consensus 243 ~~~lK~lir~i~~~lk~~~~~~~~-----~~v~~LD~L~~~~~~i-------~~~VDeL~sslYpp~d~~~v~~~~~~L~ 310 (367)
.+++|+-...-...+....+..+. -...|-|=|+..++.+ .+..|-++-+ --.++++--+...+.
T Consensus 801 ~~Lv~as~~lQ~EIVasgrgsas~~eFY~kNsrWTEGLISAaKAVa~aatvLVeaAdkvV~~---~gkfEeLIVas~EIA 877 (980)
T KOG0980|consen 801 MALVKASRELQTEIVASGRGSASPNEFYKKNSRWTEGLISAAKAVAWAATVLVEAADKVVTG---TGKFEELIVASQEIA 877 (980)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhHhcC---CCCcHHHHHhhhHHH
Confidence 888885443334444432232211 1234556565555544 4555555554 223566655555555
Q ss_pred HHHHHHHHH--HHh---------hcCCcHHHHHHHHHHHHHHHHHHhhhccc
Q 017703 311 SMTDELQKE--VES---------FNSSSEAFIQACNGLRSSLKQMDSEVDCF 351 (367)
Q Consensus 311 ~~l~k~~~~--i~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (367)
.+..+|+.- +|. +..++-..+++|..+-.+.+-=...+...
T Consensus 878 AsTaQLVaASrVKA~k~S~~ld~L~~ask~Vtqat~~lVa~vks~~sq~e~~ 929 (980)
T KOG0980|consen 878 ASTAQLVAASRVKADKDSKKLDALEVASKAVTQATAQLVASVKSGQSQLEQQ 929 (980)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhc
Confidence 555554322 222 12345555556655555544444444433
No 12
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=52.88 E-value=83 Score=34.02 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=26.6
Q ss_pred hHHHhhhhhhcCCcccHHH---HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 017703 146 AVWEACSALKKTPATNITA---IGRAMTQVAVSMKDVLREMKELKPSSSD 192 (367)
Q Consensus 146 ~VWeaCD~l~~lp~~N~~a---v~~~~~~~~~lvkDaleEleE~~e~~~~ 192 (367)
..|..=+.-+++++.|--| +..+++.+ .++-=.+|+...++|+.
T Consensus 91 e~~~~ke~~Kkms~~nakaln~lkQklkK~---~k~~e~~i~~yrenPe~ 137 (595)
T PF05470_consen 91 ETWADKEAKKKMSKNNAKALNTLKQKLKKY---NKEYEAQIAKYRENPEA 137 (595)
T ss_pred HHHhhhHhhhhcCHHhHHHHHHHHHHHHhh---hhhHHHHHHHHHhCCcc
Confidence 3565555667888877654 55555554 44555556666666653
No 13
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=46.40 E-value=2.9e+02 Score=29.18 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=92.6
Q ss_pred hhhhcCCcccHHHHHHHHHHHHHHHHHHH--HHHHhhccCCCCccccccCCCccccccCcccCCCCCcccCCCCCCHHHH
Q 017703 152 SALKKTPATNITAIGRAMTQVAVSMKDVL--REMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEEM 229 (367)
Q Consensus 152 D~l~~lp~~N~~av~~~~~~~~~lvkDal--eEleE~~e~~~~~~~e~s~d~~~~~d~~~d~de~~ddd~~~~~~seee~ 229 (367)
|.-..+|+++..+-...+.....++..-+ .||.+|++.... + . ++++.++
T Consensus 30 D~~t~mP~~g~~~Rs~a~a~Ls~l~~~l~t~~e~~~ll~~a~~---e------------------------~-~L~e~~~ 81 (497)
T COG2317 30 DSETYMPKGGIEARSEAIAELSVLRHELLTSPEFAELLEKAEE---E------------------------K-DLSEIEA 81 (497)
T ss_pred hhhcCCCcCchHHHHHHHHHHHHHHHHHhccHHHHHHHHHhhh---c------------------------c-CccHHHH
Confidence 44567899888777777777777766655 569999986420 0 0 3567777
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhh---hhccCC-CCCCchhhHHHHHHHHHhhhhhhhHH------hHhccC-
Q 017703 230 KVAQLAIGIVSDMLV----VIKELIRTITGL---LKHENP-DDGGKFVDTLERLLKLCQGIGVQIDE------LGASLY- 294 (367)
Q Consensus 230 ~~~~~~~~lvk~~~~----~lK~lir~i~~~---lk~~~~-~~~~~~v~~LD~L~~~~~~i~~~VDe------L~sslY- 294 (367)
..++-+..=.+..+. .+++..+...++ -+.... ++-+-+...|++++++.+++..-..+ .-..+|
T Consensus 82 ~~vre~~r~~~~~~~iP~e~~~e~s~~~s~a~~aWreAr~knDf~~F~p~Lekiv~l~re~A~~~~~~~~pYdaLld~yE 161 (497)
T COG2317 82 GVVRELKREYEKAKKIPEELVKEYSKLTSKAEHAWREAREKNDFSIFKPYLEKIVELKREFAEYRGYEEHPYDALLDLYE 161 (497)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcccHhhhhHHHHHHHHHHHHHHHhcccccCcHHHHHHhhc
Confidence 766655433322222 222111111111 000111 23345889999999999999776543 334568
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCcH
Q 017703 295 PPQELSVIKAGSVKILSMTDELQKEVESFNSSSE 328 (367)
Q Consensus 295 pp~d~~~v~~~~~~L~~~l~k~~~~i~~~~~~~~ 328 (367)
|.....++..-...|...|..++..|......|+
T Consensus 162 pG~t~~~i~~vF~~Lk~~L~~ll~kv~~~~~~~~ 195 (497)
T COG2317 162 PGLTVRDVDRVFAELKKELVPLLDKVLEKGKSPR 195 (497)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 8888888888888888888888888876653444
No 14
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=46.14 E-value=1.2e+02 Score=22.40 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=22.6
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhcc
Q 017703 324 NSSSEAFIQACNGLRSSLKQMDSEVDC 350 (367)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (367)
+...+.|......|...+..+...|..
T Consensus 43 G~a~~af~~~~~~~~~~~~~~~~~L~~ 69 (86)
T PF06013_consen 43 GEAADAFQDKFEEWNQAFRQLNEALEE 69 (86)
T ss_dssp SSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999988888873
No 15
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=45.53 E-value=2.1e+02 Score=29.11 Aligned_cols=57 Identities=9% Similarity=0.276 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhhhhhhhHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017703 267 KFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESF 323 (367)
Q Consensus 267 ~~v~~LD~L~~~~~~i~~~VDeL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i~~~ 323 (367)
..+..|+.+.....+-.+++..+..++-.|.....++..+..+...++++-++...+
T Consensus 290 ~lL~Nle~lt~~LA~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv 346 (370)
T PLN03094 290 GLLKEVEKLTRVAAEASEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDI 346 (370)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888899999999999888888888888888886666655555444
No 16
>PRK10869 recombination and repair protein; Provisional
Probab=45.19 E-value=4.1e+02 Score=28.35 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHHhhhhhhhHHhHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHH
Q 017703 267 KFVDTLERLLKLCQGIGVQIDELGASL-YPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMD 345 (367)
Q Consensus 267 ~~v~~LD~L~~~~~~i~~~VDeL~ssl-Ypp~d~~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (367)
...+.|+.++...+++...+......+ |-|...+++.+.+..|+. .-++.+.+.+++..+..+++.-+..|+
T Consensus 265 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~-------L~rKyg~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 265 GVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQIS-------LARKHHVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-------HHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666666666665 334444555554444443 334556677777777777766665544
No 17
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.56 E-value=40 Score=38.11 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=27.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 017703 157 TPATNITAIGRAMTQVAVSMKDVLREMKELKPSS 190 (367)
Q Consensus 157 lp~~N~~av~~~~~~~~~lvkDaleEleE~~e~~ 190 (367)
+|.-+.+-+++++......++.|+++-.+.-++.
T Consensus 855 ~~~e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~ 888 (1010)
T KOG1991|consen 855 LPSEVLGQLGPALVELLLSLPEALAERAQVEEED 888 (1010)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444556788999999999999999998887763
No 18
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.56 E-value=2.1e+02 Score=28.94 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----c-CCcH-HHHHHHHHHHHHHHHHHhhhcc
Q 017703 299 LSVIKAGSVKILSMTDELQKEVESF----N-SSSE-AFIQACNGLRSSLKQMDSEVDC 350 (367)
Q Consensus 299 ~~~v~~~~~~L~~~l~k~~~~i~~~----~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 350 (367)
..+....++.+...+.++...+..- . ++|= ...+|..+++.-|.+|+.++|=
T Consensus 296 V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 4445556666666777766666543 2 2331 7889999999999999999883
No 19
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=42.11 E-value=1.5e+02 Score=26.14 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHhhhhhhhHHhHhccC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 017703 268 FVDTLERLLKLCQGIGVQIDELGASLY--PPQELSVIKAGSVKILSMTDELQKE 319 (367)
Q Consensus 268 ~v~~LD~L~~~~~~i~~~VDeL~sslY--pp~d~~~v~~~~~~L~~~l~k~~~~ 319 (367)
.-+.|..|......+.+.+=+|+..+| ||.....+...+..|...+..|-+.
T Consensus 10 ~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~~~ 63 (147)
T KOG3046|consen 10 MQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLDKL 63 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhHHH
Confidence 455666777777777777888888886 8888888888888888777665443
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=39.99 E-value=6.5e+02 Score=29.17 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCchhhHHHHHHHHHhhhhhhhHHhHh--cc---CCCCCHHHHHHHHHHHHHHHH
Q 017703 240 SDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGA--SL---YPPQELSVIKAGSVKILSMTD 314 (367)
Q Consensus 240 k~~~~~lK~lir~i~~~lk~~~~~~~~~~v~~LD~L~~~~~~i~~~VDeL~s--sl---Ypp~d~~~v~~~~~~L~~~l~ 314 (367)
+.-..+++++-..+.++||..-.+ -......-+..+.+++++-++.++. ++ -||-+...+..++-.+.+.+.
T Consensus 365 E~L~~~~q~l~p~lI~RfkEREEn---Vk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~ 441 (1233)
T KOG1824|consen 365 EMLPDFYQTLGPALISRFKEREEN---VKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ 441 (1233)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhhh---HHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence 344556665556667777732111 2355666677788888877766642 01 255556666777776766666
Q ss_pred HHHHHHHhh---cCCcHHHHHHHHHHHHHHHH
Q 017703 315 ELQKEVESF---NSSSEAFIQACNGLRSSLKQ 343 (367)
Q Consensus 315 k~~~~i~~~---~~~~~~~~~~~~~~~~~~~~ 343 (367)
+-++ -++. .+|=.-+++..+.+++++.+
T Consensus 442 ~qlr-~ks~kt~~~cf~lL~eli~~lp~~l~~ 472 (1233)
T KOG1824|consen 442 KQLR-EKSVKTRQGCFLLLTELINVLPGALAQ 472 (1233)
T ss_pred HHHh-hccccchhhHHHHHHHHHHhCcchhhh
Confidence 5444 2222 23333445555555555443
No 21
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=38.53 E-value=2e+02 Score=24.79 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHhhhhhhhHHhHhcc-CCCCCHHHHHHHHHHHHHH
Q 017703 267 KFVDTLERLLKLCQGIGVQIDELGASL-YPPQELSVIKAGSVKILSM 312 (367)
Q Consensus 267 ~~v~~LD~L~~~~~~i~~~VDeL~ssl-Ypp~d~~~v~~~~~~L~~~ 312 (367)
..-..+......+++....+-..+..+ -.|.+...+...+.+....
T Consensus 30 ~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 30 ELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 344556666555555544444444444 2344555555544433333
No 22
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.50 E-value=79 Score=28.07 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=32.8
Q ss_pred hhhHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHhhhccc
Q 017703 284 VQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCF 351 (367)
Q Consensus 284 ~~VDeL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (367)
..+++++.-+|...-..........|...+.++.++.+++ +..|+|-.|.. ++.-+.+++.||.+.
T Consensus 20 ~~i~~~~~~l~~~~~~~~~~~~~~~l~~Ei~~l~~E~~~i-S~qDeFAkwaK-l~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 20 SYIDNWLWRLYLKLPSSKSSKEQRQLRKEILQLKRELNAI-SAQDEFAKWAK-LNRKLDKLEEELEKL 85 (161)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHTTS--TTTSHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3467777777733222444445555666666666665555 56778888764 788888898888863
No 23
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=36.70 E-value=2.1e+02 Score=23.98 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhhccccchhHHHHhhhh
Q 017703 326 SSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNV 363 (367)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (367)
.-+.|...+..|...|...+.+|.. .+..|..+
T Consensus 42 ~k~~f~~~~~~f~~~L~~V~~~Lr~-----qI~~L~e~ 74 (117)
T PF10280_consen 42 SKEAFESATSEFFSTLSSVEVELRR-----QIKYLEEV 74 (117)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHh
Confidence 4568888888888888888888874 44444444
No 24
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=36.51 E-value=2e+02 Score=30.36 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=82.7
Q ss_pred hhhhhcCCcccHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCCccccccCCCccccccCcccCCCCCcccCCCCCCHHH
Q 017703 151 CSALKKTPATNITAIGRAMTQVAVSMKDV--LREMKELKPSSSDQNNEASHDDSAKADSEHQEDDNSSLDELGNDLSSEE 228 (367)
Q Consensus 151 CD~l~~lp~~N~~av~~~~~~~~~lvkDa--leEleE~~e~~~~~~~e~s~d~~~~~d~~~d~de~~ddd~~~~~~seee 228 (367)
.|+-.-+|+++..+=...+.....++-+- -.++.+|++..... .+++++.+
T Consensus 29 WD~~T~mP~~g~~~Raeqla~Ls~~~hel~T~~~~~elL~~l~~~---------------------------~~~l~~~e 81 (494)
T PF02074_consen 29 WDQETMMPKGGAEARAEQLATLSGLIHELLTSPEIGELLEELEEE---------------------------KEDLDEWE 81 (494)
T ss_dssp HHHHCT--GGGHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHCS---------------------------GSSTTHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc---------------------------ccCCCHHH
Confidence 56677889988766555555555544443 25677777643100 01245667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------CCCCCCchhhHHHHHHHHHhhhhhhhH------HhHhccC
Q 017703 229 MKVAQLAIGIVSDMLVVIKELIRTITGLLKHE--------NPDDGGKFVDTLERLLKLCQGIGVQID------ELGASLY 294 (367)
Q Consensus 229 ~~~~~~~~~lvk~~~~~lK~lir~i~~~lk~~--------~~~~~~~~v~~LD~L~~~~~~i~~~VD------eL~sslY 294 (367)
+..++.+..-.+....+=..+++.+.++-... ..++-..+...|++++++.+++..... |.-...|
T Consensus 82 ~a~lr~~~r~~~~~~~iP~elv~~~~~~~s~a~~~W~~AR~~nDf~~F~P~Le~iv~l~re~a~~~~~~~~~YDaLLd~y 161 (494)
T PF02074_consen 82 RANLREMRRDYERATKIPEELVEELARLTSEAEQAWEEARENNDFSAFAPYLEKIVELQREIAEYLGYELSPYDALLDDY 161 (494)
T ss_dssp HHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCTSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhh
Confidence 66666655443333322222222222111100 112334588999999999999876654 3444557
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017703 295 -PPQELSVIKAGSVKILSMTDELQKEVESFN 324 (367)
Q Consensus 295 -pp~d~~~v~~~~~~L~~~l~k~~~~i~~~~ 324 (367)
|.+....+..-...|...+..++..|.+..
T Consensus 162 Epg~t~~~ld~~F~~lk~~l~~l~~~i~~~~ 192 (494)
T PF02074_consen 162 EPGMTTEKLDEIFAELKAFLVPLLQKILEKQ 192 (494)
T ss_dssp STT--HHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888888888888886543
No 25
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=36.27 E-value=3.1e+02 Score=26.36 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017703 161 NITAIGRAMTQVAVSMKDVLREMKELKPS 189 (367)
Q Consensus 161 N~~av~~~~~~~~~lvkDaleEleE~~e~ 189 (367)
+...+.+.+.....+++|+++||+-|.--
T Consensus 216 ~~e~~~~~~~~~~~lI~d~~~e~~~w~~f 244 (249)
T PF06685_consen 216 EKERVLPRLRKSYELINDTIEEMEWWSCF 244 (249)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHhcChhc
Confidence 34566666777799999999999999754
No 26
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=35.78 E-value=2.5e+02 Score=28.03 Aligned_cols=19 Identities=11% Similarity=0.401 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 017703 224 LSSEEMKVAQLAIGIVSDM 242 (367)
Q Consensus 224 ~seee~~~~~~~~~lvk~~ 242 (367)
||++++.+++...+.+..-
T Consensus 2 ls~~~~~~i~~sw~~~~~~ 20 (399)
T PRK13289 2 LSAQTIAIVKATVPLLEEH 20 (399)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 7899999999998887544
No 27
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei []. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination [].; GO: 0007349 cellularization, 0005737 cytoplasm, 0016020 membrane
Probab=35.20 E-value=5.8e+02 Score=27.44 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=67.6
Q ss_pred chhhHHHHHHHHHhhhhhhhHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcH----HHHHHHHHHHHHH
Q 017703 267 KFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESF-NSSSE----AFIQACNGLRSSL 341 (367)
Q Consensus 267 ~~v~~LD~L~~~~~~i~~~VDeL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i~~~-~~~~~----~~~~~~~~~~~~~ 341 (367)
+++..||-.+++.......+++-....|-+...+.+ .....|...++.++...=++ |.+.+ ..++-|.++-..-
T Consensus 137 ~FV~llDlALD~l~~~s~~~~~~~~~~~~~~~~e~~-~e~~~l~~~ie~il~hAlafaNVal~~DkkAlsa~CQkVl~Ec 215 (552)
T PF05482_consen 137 SFVELLDLALDHLEPFSEIFEDNSDQSYRIEEEEQL-SESKQLRSIIEHILSHALAFANVALEEDKKALSALCQKVLREC 215 (552)
T ss_pred cHHHHHHHHHHHHHHHhhcccccCchhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHH
Confidence 799999999999999888888877777755555555 44678888888888777666 55444 6778888888888
Q ss_pred HHHHhhhccccchhH
Q 017703 342 KQMDSEVDCFNTTDL 356 (367)
Q Consensus 342 ~~~~~~~~~~~~~~~ 356 (367)
.+++.+.+....+..
T Consensus 216 ~af~~~~~~~n~~~~ 230 (552)
T PF05482_consen 216 NAFQEECGDSNPSNR 230 (552)
T ss_pred HHHHHHhcCCChHhh
Confidence 899888776555543
No 28
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.07 E-value=2.3e+02 Score=27.31 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhhhhhHHhHhccCCCCC--HHHHHHHHHHHHHHHHHHHHH----HHhhcCCcHHHHHHHHHHHHHHHH
Q 017703 271 TLERLLKLCQGIGVQIDELGASLYPPQE--LSVIKAGSVKILSMTDELQKE----VESFNSSSEAFIQACNGLRSSLKQ 343 (367)
Q Consensus 271 ~LD~L~~~~~~i~~~VDeL~sslYpp~d--~~~v~~~~~~L~~~l~k~~~~----i~~~~~~~~~~~~~~~~~~~~~~~ 343 (367)
.|+++...+..| ..+|+..+++|.. ..+++...........++.+. ++.+..+--.|..+|...+.|...
T Consensus 74 ~~~~~a~q~e~~---a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k 149 (252)
T cd07675 74 ELNDYAGQREVV---AEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQS 149 (252)
T ss_pred HHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 6777777887766 344444433332333332222 223344455677777777777666
No 29
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=34.51 E-value=7.7e+02 Score=28.38 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=66.5
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHhhhhccC---CCCCCchhhHHHHHHHHHhhhhhhhHHhHhccC-
Q 017703 224 LSSEEM-KVAQLAIGIVSDMLVVIK----ELIRTITGLLKHEN---PDDGGKFVDTLERLLKLCQGIGVQIDELGASLY- 294 (367)
Q Consensus 224 ~seee~-~~~~~~~~lvk~~~~~lK----~lir~i~~~lk~~~---~~~~~~~v~~LD~L~~~~~~i~~~VDeL~sslY- 294 (367)
++...+ .+++.+.+++..+..+|- .-||+|....+.-. ... ..+....+|....+.+++.+.+|+--..
T Consensus 98 ~s~~~R~~lv~aar~lL~~vt~lLllaD~~~Vr~Ii~~~~~v~~~l~~~--e~~~s~~el~~~~~~f~~~~~~l~~~~~~ 175 (968)
T PF01044_consen 98 CSSPKRKKLVRAARGLLSGVTRLLLLADMADVRKIIRACKKVLDYLERL--ESAESMEELVQAFKDFGPEMVELAKLTGR 175 (968)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG--CT-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 344444 477777777766655541 00133332222100 001 2355667888999999999998887664
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHH----Hhh--c---C--CcHH----HHHHHHHHHHHHHHHHhhhc
Q 017703 295 --PPQELSVIKAGSVKILSMTDELQKEV----ESF--N---S--SSEA----FIQACNGLRSSLKQMDSEVD 349 (367)
Q Consensus 295 --pp~d~~~v~~~~~~L~~~l~k~~~~i----~~~--~---~--~~~~----~~~~~~~~~~~~~~~~~~~~ 349 (367)
.....+..+..+......|++..-.+ +.+ | + ..+. ---.+.+++++|..+..-+-
T Consensus 176 Rq~eL~~~~~r~~l~~a~~~Lk~~~p~L~ts~k~~l~h~~~p~~~~~~a~~nRd~v~~~m~~al~~Ii~vlq 247 (968)
T PF01044_consen 176 RQQELKDPEHRDQLAAARAVLKKCSPMLLTSSKTYLRHPNDPGKEVEEARENRDYVFKQMRDALNEIIRVLQ 247 (968)
T ss_dssp HHCTBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44446666676666666666654443 222 3 2 1221 22256667777776664443
No 30
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=30.85 E-value=4e+02 Score=24.04 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=26.4
Q ss_pred HhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCcHHHHHHHHHHHHHHHHHHhhhc
Q 017703 288 ELGASLYPPQELSVIKAGSVKILSMTDELQKEVESF--------NSSSEAFIQACNGLRSSLKQMDSEVD 349 (367)
Q Consensus 288 eL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (367)
.|..+++.|.+-+++..-+..+.+++..+-.....+ ...++.|...+....++...|...+.
T Consensus 66 ~L~~~fitP~dRedi~~L~~~lD~I~d~i~~~a~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~ 135 (214)
T PF01865_consen 66 ELYKSFITPFDREDILRLISSLDDIADYIEDAAKRLSLYKVEIPEELREEFQELAEIVVEAIEELVEAIE 135 (214)
T ss_dssp HHHH-SS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCGHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444444444443333322 11233455555555555554444443
No 31
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=29.83 E-value=4.2e+02 Score=23.91 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCchhhHHHHHHHHHhhhhhhhHHhHhcc
Q 017703 229 MKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLCQGIGVQIDELGASL 293 (367)
Q Consensus 229 ~~~~~~~~~lvk~~~~~lK~lir~i~~~lk~~~~~~~~~~v~~LD~L~~~~~~i~~~VDeL~ssl 293 (367)
..+...+..+...+...+..+...| .+++.......|..|....+++...++.++..|
T Consensus 76 i~~~~~I~~Y~~~f~syY~~L~~~i-------d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L 133 (184)
T PF05791_consen 76 IDLNQDIINYNTTFQSYYDTLVEAI-------DQKDKEDLKEIIEDLQDQIQKNQDKVQALINEL 133 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566665333333 122333556666677666666666666666443
No 32
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=29.59 E-value=5.6e+02 Score=25.33 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=48.7
Q ss_pred HHhhhhhhhHHhHhcc-CCCCC------HHHHHHHHHHHHHHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHH
Q 017703 278 LCQGIGVQIDELGASL-YPPQE------LSVIKAGSVKILSMTDELQKEVES-FNSSSEAFIQACNGLRSSLKQM 344 (367)
Q Consensus 278 ~~~~i~~~VDeL~ssl-Ypp~d------~~~v~~~~~~L~~~l~k~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~ 344 (367)
+..-+++.|+++...= +=..| .+.+..++..|...+.+++..|-+ .+-+|..+...|..+|..+.+-
T Consensus 96 L~~~L~pvI~~i~~~~~~~EiDP~ki~~~~~~e~n~~~L~~~~~~~~~~I~~S~~~~P~~lr~i~~~l~~~v~~k 170 (315)
T cd05128 96 LHVTLKPIIDKIFEEKKYCELDPSKVKLGEVLENNRENLRYYLDRLFEAITKSSVSCPTVMCDIFYQLRERVGER 170 (315)
T ss_pred HHHHHHHHHHHHHhCCCCcccChhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3455677788876651 11222 245677888898888888887764 5899999999999999987653
No 33
>PF10759 DUF2587: Protein of unknown function (DUF2587); InterPro: IPR019695 This entry represents proteins found Actinobacteria sp. The function is not known.
Probab=27.80 E-value=2.5e+02 Score=25.07 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHhhhccccchhHHHHhhhhcc
Q 017703 307 VKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEVDCFNTTDLEAKLQNVAI 365 (367)
Q Consensus 307 ~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (367)
-++.+.+++++.++++----+......-.--+.||+.||.-|.- |++.+++-+++
T Consensus 33 MRIGtMikqLLEEVraApLDeAsR~RL~eIH~~SI~ELedgLaP----eL~eEL~Rlsl 87 (169)
T PF10759_consen 33 MRIGTMIKQLLEEVRAAPLDEASRNRLREIHERSIKELEDGLAP----ELREELERLSL 87 (169)
T ss_pred HhHHHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHcCC
Confidence 34555566666666654333333333333345667777777665 66666666654
No 34
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=26.53 E-value=4.3e+02 Score=23.17 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=54.1
Q ss_pred chhhHHHHHHHHHhhhhhhhHHhHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHH-HHHHHHHHHHHHH
Q 017703 267 KFVDTLERLLKLCQGIGVQIDELGASL-YPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFI-QACNGLRSSLKQM 344 (367)
Q Consensus 267 ~~v~~LD~L~~~~~~i~~~VDeL~ssl-Ypp~d~~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~ 344 (367)
-++.+|.+++..-+++......++-.- | |.=-..+..++..-...+..+-.+++.++..|...+ .+..++......+
T Consensus 3 lf~~~L~d~y~aE~Q~~~al~~m~~~a~~-peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~ 81 (147)
T cd07909 3 LFVHELRDLYSAEKQLVKALPKMAKAATS-EELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEEL 81 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHH
Confidence 367788888888888877777777443 3 333444666666667777776777777777776666 6666665555555
Q ss_pred Hhhhcc
Q 017703 345 DSEVDC 350 (367)
Q Consensus 345 ~~~~~~ 350 (367)
..+...
T Consensus 82 ~~~~~~ 87 (147)
T cd07909 82 IEETGD 87 (147)
T ss_pred HhccCC
Confidence 555543
No 35
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=26.21 E-value=7.2e+02 Score=25.43 Aligned_cols=166 Identities=11% Similarity=0.126 Sum_probs=82.4
Q ss_pred hHHHHHHHHhhhhhchHHHHHhhhccccCCc---CcchHH------------HHHHHHHHHHhhhhhhhhcccCCCCCHH
Q 017703 7 EKEQLIRTLNNHLNNIHETLQVLNQTAASSL---EKVSWN------------DVIQMGEQVSKKATVVGMLWTGETPEAK 71 (367)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~------------~l~~~a~~l~~~aTKlsll~~~~Pps~~ 71 (367)
.-.+|-.-+++..+.+..+|..+.+|.-+.. +...|. .|....+.-..+.+++--.+-+.. .
T Consensus 74 ~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~---~ 150 (412)
T PF04108_consen 74 DFKDLVKELDPADARLEQTLDMLRNTKVPPFFRPPGEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSL---L 150 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCCccccCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---H
Confidence 4455667778888888899999998884431 112222 233333333444555544442122 2
Q ss_pred HHHHHHHHHHHHH-----HHHHH-hccCCC------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCc
Q 017703 72 AIEENMAEYFNML-----QGFIL-LSHGST------VGAGPTLSLSIHASVKQVVDSSFKLMMESITLYAGSDNKDKEHL 139 (367)
Q Consensus 72 ~~~~~~~~l~~~l-----~~~~~-l~~~~~------~g~g~tl~~~i~~~~~~vv~~~~~L~~~l~~~~~~s~~~~~~~~ 139 (367)
.+...+..+.+.+ ..+-. .+.... ...+..+...+-..-..+-.+|.++++.|...|.+... .
T Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~-----a 225 (412)
T PF04108_consen 151 QFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSPSSSSSNPLMSTILKELHSLEQEMASLLESLTNHFDQCVT-----A 225 (412)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 2333333333333 11110 010000 00012344444444444446666677777666543210 0
Q ss_pred ccchhhhHHHhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017703 140 MPQYVGAVWEACSALKKTPATNITAIGRAMTQVAVSMKDVLREMKELKPS 189 (367)
Q Consensus 140 ~l~stG~VWeaCD~l~~lp~~N~~av~~~~~~~~~lvkDaleEleE~~e~ 189 (367)
+...-| ..++.....-....+.+...-|.|++.||++-+..
T Consensus 226 ~~~~eg---------~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~ 266 (412)
T PF04108_consen 226 VRHTEG---------EPMSEEERQEMLEVLENDAQELPDVVKELQERLDE 266 (412)
T ss_pred HHHhcc---------CCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHH
Confidence 111111 23443445567888888888888888888887754
No 36
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=26.14 E-value=2.2e+02 Score=25.25 Aligned_cols=77 Identities=25% Similarity=0.241 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhhhhhhhHHhHhccC-CCCCHHHH-HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHH
Q 017703 269 VDTLERLLKLCQGIGVQIDELGASLY-PPQELSVI-KAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMD 345 (367)
Q Consensus 269 v~~LD~L~~~~~~i~~~VDeL~sslY-pp~d~~~v-~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (367)
...|.+|-..++.+..+||.+...|= .-+....+ .++++-+...+.+++..+...-.+-..+-.-|..+-++|+.++
T Consensus 51 ~~~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~ 129 (149)
T PF10157_consen 51 PAVLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVY 129 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777777777766652 22222222 2334444444444444443222223344455555555555443
No 37
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=25.35 E-value=1.6e+02 Score=23.85 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=3.6
Q ss_pred HHHHHhhcCCcH
Q 017703 317 QKEVESFNSSSE 328 (367)
Q Consensus 317 ~~~i~~~~~~~~ 328 (367)
...|..++|.|+
T Consensus 51 ~~~i~~~Gg~p~ 62 (111)
T PF09537_consen 51 QAEIQELGGEPE 62 (111)
T ss_dssp HHHHHHTT--H-
T ss_pred HHHHHHcCCCcC
Confidence 333334444444
No 38
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=25.14 E-value=4.7e+02 Score=22.90 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHhhhhhhhHHhH---hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH--HHHHHHH
Q 017703 268 FVDTLERLLKLCQGIGVQIDELG---ASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACN--GLRSSLK 342 (367)
Q Consensus 268 ~v~~LD~L~~~~~~i~~~VDeL~---sslYpp~d~~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~--~~~~~~~ 342 (367)
+-..++.|......|.|.|.++- .-+-.|. .+.++.|...+++-.+.+.+....+ +.-.|. +..+-|.
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~-----~ee~e~L~~~L~~g~~LV~k~sk~~--r~n~~kk~~y~~Ki~ 104 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLNVELDRPR-----QEEIERLKELLEKGKELVEKCSKVR--RWNLYKKPRYARKIE 104 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCch-----hHHHHHHHHHHHHHHHHHHHhcccc--HHHHHhhHhHHHHHH
Confidence 44566777777777777766644 2333221 4556667777777666666654433 222222 3456788
Q ss_pred HHHhhhccccchhH
Q 017703 343 QMDSEVDCFNTTDL 356 (367)
Q Consensus 343 ~~~~~~~~~~~~~~ 356 (367)
.||..|..++..++
T Consensus 105 ~le~~l~~f~~v~~ 118 (147)
T PF05659_consen 105 ELEESLRRFIQVDL 118 (147)
T ss_pred HHHHHHHHHhcchh
Confidence 88888887766543
No 39
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.66 E-value=2.5e+02 Score=25.82 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHhh
Q 017703 299 LSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSE 347 (367)
Q Consensus 299 ~~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (367)
..+++..+..|...+++|++..+.+..+...+..+...|-.+|..+-..
T Consensus 4 l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~ 52 (200)
T cd07603 4 LEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDY 52 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777778888888888888877767777777777777777766553
No 40
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=24.25 E-value=1.5e+02 Score=32.96 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=38.3
Q ss_pred hhhhHHhHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh--------hcCCcHHHHHHHHHHHH
Q 017703 283 GVQIDELGASLYP-PQELSVIKAGSVKILSMTDELQKEVES--------FNSSSEAFIQACNGLRS 339 (367)
Q Consensus 283 ~~~VDeL~sslYp-p~d~~~v~~~~~~L~~~l~k~~~~i~~--------~~~~~~~~~~~~~~~~~ 339 (367)
-.-+|-+.+.+|| |.++.+-++.+..++..+..+..++.. ++...+.+..|.-++|+
T Consensus 239 kKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K 304 (829)
T KOG2189|consen 239 KKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRK 304 (829)
T ss_pred HHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3338899999998 888877777777777777765555532 23445556666655554
No 41
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.83 E-value=7.6e+02 Score=24.89 Aligned_cols=77 Identities=8% Similarity=0.103 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHhhhhhhhHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHh
Q 017703 267 KFVDTLERLLKLCQGIGVQIDELGASLYPPQELSVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDS 346 (367)
Q Consensus 267 ~~v~~LD~L~~~~~~i~~~VDeL~sslYpp~d~~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (367)
.+-..++.|++.+..+.+..+-| |+=.+ =-..+..|+.....+...+..+...-........+|+..|..|+.
T Consensus 292 ~~e~KI~eLy~~l~~~~~~~~~l------P~lv~-RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~ 364 (388)
T PF04912_consen 292 EQESKIDELYEILPRWDPYAPSL------PSLVE-RLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEE 364 (388)
T ss_pred cchhHHHHHHHHHHHHHHHhhhh------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777877777765443321 21111 122455566666666666666666666666777777777777777
Q ss_pred hhcc
Q 017703 347 EVDC 350 (367)
Q Consensus 347 ~~~~ 350 (367)
.+..
T Consensus 365 ~~~~ 368 (388)
T PF04912_consen 365 KFKE 368 (388)
T ss_pred HHHH
Confidence 6554
No 42
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=23.51 E-value=3e+02 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 017703 304 AGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLK 342 (367)
Q Consensus 304 ~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~ 342 (367)
.+-.+|....+.+...+..+.--.+.|....+++.++|+
T Consensus 47 ~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LK 85 (121)
T PF06320_consen 47 ENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALK 85 (121)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555444444444444444444444444444
No 43
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=23.16 E-value=47 Score=30.65 Aligned_cols=28 Identities=32% Similarity=0.264 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHhhh---hhhhHHhHhccC
Q 017703 267 KFVDTLERLLKLCQGI---GVQIDELGASLY 294 (367)
Q Consensus 267 ~~v~~LD~L~~~~~~i---~~~VDeL~sslY 294 (367)
.....++.|......| +..+|.|+.-||
T Consensus 107 ~~~~~~~~l~~~~~~ikl~~k~id~L~~~lr 137 (211)
T PF04546_consen 107 KYQKLREELAEEFMEIKLSPKQIDRLVEQLR 137 (211)
T ss_dssp HHHHHHHHHHHHHTTCEE-HHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 4556666666665554 566788877777
No 44
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=22.59 E-value=5.3e+02 Score=22.66 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017703 161 NITAIGRAMTQVAVSMKDVLREMKELKPS 189 (367)
Q Consensus 161 N~~av~~~~~~~~~lvkDaleEleE~~e~ 189 (367)
|++.|...++....-.++...++.+.+.+
T Consensus 76 gF~vvA~eir~LA~~t~~~~~~I~~~i~~ 104 (213)
T PF00015_consen 76 GFAVVADEIRKLAEQTSESAKEISEIIEE 104 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence 55567888888888888888888877754
No 45
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=21.98 E-value=1.7e+02 Score=26.38 Aligned_cols=24 Identities=8% Similarity=0.324 Sum_probs=20.7
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHH
Q 017703 321 ESFNSSSEAFIQACNGLRSSLKQM 344 (367)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~ 344 (367)
-.+|..++.+..|...+...|++|
T Consensus 190 DGlHpn~~Gy~~~a~~l~~~l~~~ 213 (214)
T cd01820 190 DYLHLTAAGYRKWADALHPTLARL 213 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Confidence 457999999999999999998865
No 46
>PF08618 Opi1: Transcription factor Opi1; InterPro: IPR013927 Opi1 is a leucine zipper containing yeast transcription factor that negatively regulates phospholipid biosynthesis []. It represses the expression of several UAS(INO) cis acting element containing genes and its activity is mediated by phosphorylations catalysed by protein kinase A, protein kinase C and casein kinase II [].
Probab=21.73 E-value=5e+02 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017703 222 NDLSSEEMKVAQLAIGIVSDMLVVIKELIRTITGLLK 258 (367)
Q Consensus 222 ~~~seee~~~~~~~~~lvk~~~~~lK~lir~i~~~lk 258 (367)
..+|+|=+..++-|+.+++.+-..|-..|..+...|.
T Consensus 223 vamS~ES~k~LkyCL~~Lr~AN~~i~~~i~~Lq~~l~ 259 (427)
T PF08618_consen 223 VAMSEESKKSLKYCLHWLRLANAHIDSKINFLQDVLE 259 (427)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999998888865555554443
No 47
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=21.24 E-value=3.6e+02 Score=22.93 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCchhhHHHHHHHHH
Q 017703 228 EMKVAQLAIGIVSDMLVVIKELIRTITGLLKHENPDDGGKFVDTLERLLKLC 279 (367)
Q Consensus 228 e~~~~~~~~~lvk~~~~~lK~lir~i~~~lk~~~~~~~~~~v~~LD~L~~~~ 279 (367)
|-..+-.+..+++....--|..++.|.++|+..+|.-.-..+..||.++.+|
T Consensus 22 Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 22 DWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp -HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 3344444555655444444555667778787554433223567788888877
No 48
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=21.16 E-value=89 Score=21.56 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=13.1
Q ss_pred hhhhhcccCCC-CCHHHHHHHHHHHHHHHH
Q 017703 57 TVVGMLWTGET-PEAKAIEENMAEYFNMLQ 85 (367)
Q Consensus 57 TKlsll~~~~P-ps~~~~~~~~~~l~~~l~ 85 (367)
|-+|=+.++.| |++.++.+.++.+.|..+
T Consensus 12 tClggLasPgPvp~~~alkELIeELvNITq 41 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEELVNITQ 41 (43)
T ss_dssp -----------S-HHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHHhhcc
Confidence 34455555455 777778888888877654
No 49
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=4.4e+02 Score=21.14 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=22.0
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhc
Q 017703 324 NSSSEAFIQACNGLRSSLKQMDSEVD 349 (367)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (367)
+-+...|..+..+|...+..|...|+
T Consensus 46 G~a~~~f~~~~~~w~~~~~~l~~~l~ 71 (97)
T COG4842 46 GDAAEAFQSEQQQWNQAATELNEALE 71 (97)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677999999999999999988886
No 50
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=20.78 E-value=3.8e+02 Score=25.06 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHhhh
Q 017703 300 SVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQMDSEV 348 (367)
Q Consensus 300 ~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (367)
..+.+.+..+...+.|+.+-++++..+...+..+...|..++..|-.+.
T Consensus 5 ~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~ 53 (215)
T cd07604 5 GALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKA 53 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 3566677777777777777777777777777777777777777666544
No 51
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.56 E-value=2.2e+02 Score=26.47 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q 017703 300 SVIKAGSVKILSMTDELQKEVESFNSSSEAFIQACNGLRSSLKQM 344 (367)
Q Consensus 300 ~~v~~~~~~L~~~l~k~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 344 (367)
++++..+..|.+.|++|++..+.+..+.-++..+...|-.+|..+
T Consensus 5 ~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f 49 (200)
T cd07639 5 EEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDL 49 (200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666665555444444444444444444444
No 52
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.54 E-value=2.3e+02 Score=27.06 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=28.6
Q ss_pred HHhHhccC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017703 287 DELGASLY----PPQELSVIKAGSVKILSMTDELQKEVESF 323 (367)
Q Consensus 287 DeL~sslY----pp~d~~~v~~~~~~L~~~l~k~~~~i~~~ 323 (367)
|.+..+.| ||..+.+|++++.+|...+..+.++...+
T Consensus 37 ~~~lna~~kv~~~d~eF~e~~ey~d~l~~~l~~ieki~~Rv 77 (240)
T cd07667 37 VKYVTGGYKLRSRPLEFAAIGDYLDTFALKLGTIDRIAQRI 77 (240)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35555555 78889999999999999988887777554
No 53
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.50 E-value=3e+02 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=32.7
Q ss_pred hhhhhhHHhHhc---cC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017703 281 GIGVQIDELGAS---LY-PPQELSVIKAGSVKILSMTDELQKEVE 321 (367)
Q Consensus 281 ~i~~~VDeL~ss---lY-pp~d~~~v~~~~~~L~~~l~k~~~~i~ 321 (367)
.+++.+.-+.++ += ||..+.++++++.+|...|..+.+++.
T Consensus 34 ~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~ 78 (243)
T cd07666 34 RMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQ 78 (243)
T ss_pred hhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 345678888888 44 888899999999999998888777665
No 54
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=20.23 E-value=8.7e+02 Score=24.23 Aligned_cols=42 Identities=5% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHHHHHHH
Q 017703 302 IKAGSVKILSMTDELQKEVE-SFNSSSEAFIQACNGLRSSLKQ 343 (367)
Q Consensus 302 v~~~~~~L~~~l~k~~~~i~-~~~~~~~~~~~~~~~~~~~~~~ 343 (367)
...++..|...+.+++..|- +.+-+|-.+...|..+|..+.+
T Consensus 144 ~e~~i~~L~~~~~~~~~~I~~S~~~~P~~lR~i~~~l~~~v~~ 186 (333)
T cd05135 144 RESSLEMLQGYLSSITDAIVGSVSQCPPVMRLTFKQLHKRVEE 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhCCHHHHHHHHHHHHHHHH
Confidence 45567788887777777665 4589999999999999988754
Done!