Query 017704
Match_columns 367
No_of_seqs 142 out of 192
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 02:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2656 DNA methyltransferase 100.0 1E-103 2E-108 775.1 23.3 343 1-362 4-370 (445)
2 PF05499 DMAP1: DNA methyltran 100.0 3.1E-29 6.7E-34 227.3 5.3 128 222-360 1-142 (176)
3 cd00167 SANT 'SWI3, ADA2, N-Co 97.6 3E-05 6.5E-10 52.9 2.0 43 129-172 1-44 (45)
4 smart00717 SANT SANT SWI3, AD 97.4 9.7E-05 2.1E-09 51.0 2.1 45 128-173 2-47 (49)
5 PF00249 Myb_DNA-binding: Myb- 97.4 6.2E-05 1.3E-09 54.4 0.7 44 129-172 3-47 (48)
6 PF13921 Myb_DNA-bind_6: Myb-l 97.0 0.00023 4.9E-09 53.1 0.9 41 130-171 1-41 (60)
7 PLN03212 Transcription repress 96.2 0.0095 2.1E-07 57.8 6.2 61 120-181 67-131 (249)
8 PLN03091 hypothetical protein; 96.1 0.0088 1.9E-07 62.2 5.5 63 119-182 55-121 (459)
9 PLN03212 Transcription repress 80.3 1.1 2.3E-05 43.9 2.1 51 125-175 23-74 (249)
10 PF13837 Myb_DNA-bind_4: Myb/S 74.5 0.81 1.8E-05 36.1 -0.5 55 128-182 2-73 (90)
11 PLN03091 hypothetical protein; 55.4 5.7 0.00012 41.9 1.2 51 123-173 10-61 (459)
12 PF08963 DUF1878: Protein of u 53.5 6.8 0.00015 34.3 1.2 30 117-146 25-54 (113)
13 PF14597 Lactamase_B_5: Metall 47.4 15 0.00032 35.0 2.5 73 66-170 6-78 (199)
14 COG1168 MalY Bifunctional PLP- 43.7 19 0.00041 37.5 2.7 26 129-156 174-199 (388)
15 PF03993 DUF349: Domain of Unk 40.2 55 0.0012 25.0 4.3 47 163-234 1-47 (77)
16 COG5114 Histone acetyltransfer 40.1 12 0.00026 38.3 0.8 47 125-172 61-108 (432)
17 PF05499 DMAP1: DNA methyltran 38.2 64 0.0014 30.3 5.1 114 200-338 16-137 (176)
18 PF13873 Myb_DNA-bind_5: Myb/S 33.1 42 0.00091 26.0 2.7 49 127-178 2-50 (78)
19 KOG0048 Transcription factor, 33.1 44 0.00095 31.9 3.3 53 127-180 62-115 (238)
20 cd03769 SR_IS607_transposase_l 31.3 60 0.0013 28.1 3.6 54 130-183 74-130 (134)
21 cd03007 PDI_a_ERp29_N PDIa fam 30.5 46 0.00099 28.9 2.7 29 139-167 68-110 (116)
22 KOG3876 Arfaptin and related p 29.2 37 0.0008 34.1 2.1 38 316-353 303-340 (341)
23 TIGR01557 myb_SHAQKYF myb-like 29.0 41 0.00088 25.7 1.9 41 129-169 5-50 (57)
24 PRK08068 transaminase; Reviewe 28.7 54 0.0012 32.5 3.2 28 129-157 183-210 (389)
25 PRK14841 undecaprenyl pyrophos 28.3 46 0.00099 32.2 2.5 79 110-205 50-139 (233)
26 KOG0457 Histone acetyltransfer 27.2 36 0.00078 36.0 1.7 47 125-172 70-117 (438)
27 PRK14842 undecaprenyl pyrophos 25.4 54 0.0012 31.9 2.5 39 110-155 55-104 (241)
28 KOG0049 Transcription factor, 25.3 33 0.00071 38.3 1.1 48 126-173 304-354 (939)
29 KOG0048 Transcription factor, 24.9 53 0.0011 31.3 2.3 34 128-161 10-44 (238)
30 PRK14838 undecaprenyl pyrophos 24.7 62 0.0013 31.6 2.7 39 110-155 57-104 (242)
31 PF03776 MinE: Septum formatio 24.6 1.2E+02 0.0026 23.9 3.9 34 147-180 9-45 (70)
32 TIGR00055 uppS undecaprenyl di 23.7 67 0.0014 31.1 2.7 39 110-155 46-95 (226)
33 PRK06620 hypothetical protein; 23.4 1.4E+02 0.0031 27.8 4.8 41 129-169 96-136 (214)
34 PRK09147 succinyldiaminopimela 23.3 82 0.0018 31.3 3.4 28 129-157 182-209 (396)
35 PRK07681 aspartate aminotransf 23.0 84 0.0018 31.3 3.4 28 129-157 182-209 (399)
36 COG3623 SgaU Putative L-xylulo 22.3 1.6E+02 0.0035 29.4 5.0 98 112-212 33-137 (287)
37 PRK06290 aspartate aminotransf 21.2 92 0.002 31.6 3.3 28 129-157 195-222 (410)
38 PRK06855 aminotransferase; Val 21.0 88 0.0019 31.9 3.2 27 129-156 187-213 (433)
39 cd01992 PP-ATPase N-terminal d 20.8 3E+02 0.0065 24.1 6.1 34 132-165 44-79 (185)
40 cd00475 CIS_IPPS Cis (Z)-Isopr 20.7 84 0.0018 30.1 2.7 39 110-155 47-96 (221)
41 PF04889 Cwf_Cwc_15: Cwf15/Cwc 20.5 83 0.0018 30.7 2.7 29 218-246 143-171 (244)
42 PRK07590 L,L-diaminopimelate a 20.5 1E+02 0.0022 30.8 3.5 28 129-157 192-219 (409)
43 PRK14827 undecaprenyl pyrophos 20.4 85 0.0018 31.6 2.8 39 110-155 114-163 (296)
44 PRK09257 aromatic amino acid a 20.4 1E+02 0.0022 30.6 3.4 28 129-157 188-215 (396)
No 1
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.9e-104 Score=775.14 Aligned_cols=343 Identities=43% Similarity=0.687 Sum_probs=287.3
Q ss_pred CChhhhhCCCCC-CCCCcc-cccCCCCCCCCCCCCcccHHHHHhhCC-CCCCCccccccccccCCCCC-CCCCceecccc
Q 017704 1 MDAKDILGIPKT-QLPTTQ-EKKSRPQKEPQRKPDGISREVYALTGG-LAPLMPSIDVSQLKKRPPSD-EKITWQWLPFT 76 (367)
Q Consensus 1 ~DvrDIL~lp~~-~~~~~~-~Kk~k~~~~~~krp~Gm~REvyaLlG~-~~P~~p~~~~~~~K~k~~~~-k~~~W~w~pFt 76 (367)
+||+|||+||+. ...+.. +++.+++....+||+|||||||||||+ .||++|++++ .||+++..+ ++++|.|+||+
T Consensus 4 aDirDIL~l~~~t~~~~~kq~s~~rs~t~s~rrPeGm~REvyaLlg~n~pPL~ps~~~-~fkek~l~s~K~~~W~w~pFt 82 (445)
T KOG2656|consen 4 ADIRDILELPQKTRSLTNKQKSKPRSSTESRRRPEGMSREVYALLGENAPPLLPSDTN-NFKEKRLGSKKVRPWKWVPFT 82 (445)
T ss_pred ccHHHHhcCCCCCCCCcccccccCCCchhccCCCcchhHHHHHHhcCCCCCccccccc-hhhhccCccccCCCceeeccC
Confidence 699999999984 323332 222234455678999999999999995 8999998874 488877665 77899999999
Q ss_pred cccCCCCeEEeeeeeccCCCCCCCCCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCceeEEEecCC
Q 017704 77 NSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRF 156 (367)
Q Consensus 77 N~AR~DgL~L~HWvr~~~~~~~~~dY~FAKfN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~fDLRfiVI~DRy 156 (367)
||||+|+++||||||+.+ +.+||||||||++|+||.||||||+.||.|+.||++|||||||||++||||||||+|||
T Consensus 83 n~aRkD~~~l~HWvr~~d---~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRy 159 (445)
T KOG2656|consen 83 NSARKDDATLHHWVRVGD---TPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRY 159 (445)
T ss_pred CccccCCceEEeeeeccC---CCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEEEeecc
Confidence 999999999999999954 47899999999999999999999999999999999999999999999999999999998
Q ss_pred C-----CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccC-CCCChHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 017704 157 P-----SSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVK-DPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEA 230 (367)
Q Consensus 157 ~-----~~RtvEDLK~RYY~V~~kl~~~R~~~~~~~~~~~l~~-~~fd~~~E~~RK~~L~~ll~RT~~q~~EEe~L~~El 230 (367)
+ .+|||||||||||+|||+|+.+|++++.+ |++ ++||++||++||+||++||+||++|++||++|++|+
T Consensus 160 d~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~sd-----llk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~ 234 (445)
T KOG2656|consen 160 DNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNSD-----LLKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVEL 234 (445)
T ss_pred chhhccccccHHHHHHHHHHHHHHHHHccCCCchh-----hhhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5 47999999999999999999999987654 233 799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCC----CccCC--------CCccchhcccccCCCCCCCCCCCCCCCccCCCcccccccccchhh
Q 017704 231 KRITDSRMASRAAEEPEM----PVASH--------VGSESADRAVVLGDTVSPSSNIQLPSATVVPSTSIIADSASTLAS 298 (367)
Q Consensus 231 krIe~~Rk~er~~~~~~l----~~a~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (367)
|||| +|++++.++.+++ ..|+. ++....+.+...+++.. ..+....+++|.. +..+++++|++
T Consensus 235 KkiE-arkke~~~~~~~l~rlld~ad~~i~~~stS~~~~~~~~~~~a~kt~~---k~~~a~v~a~~~~-s~~ss~~~F~~ 309 (445)
T KOG2656|consen 235 KKIE-ARKKERLAERQDLLRLLDSADGDITQYSTSPGMSSLENALLAKKTRQ---KKHEANVPASPRE-SWMSSGIKFAD 309 (445)
T ss_pred HHHH-HHhhhhhhhhHHHHHhhhcccccccccccChhHHHHHHHHhhhhhhc---ccccccCccccch-hhhhhhhhccc
Confidence 9999 7889999998886 23331 22333444443332111 1123333333322 46789999999
Q ss_pred hcccceeeehHHHHHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcc--hhhhhhhhccchheee
Q 017704 299 LRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVCSCFLNC--ECHAYTHFYCHVIYHS 362 (367)
Q Consensus 299 ~r~~gvyLRs~~~~~~~q~~~~~~G~r~~K~veq~L~elgv~~~~~~~--~c~~~~~~~~~~~~~~ 362 (367)
+|..||-||+++| .+|+++|+|+||++||+||+|||++.|.|+ +|+.|++++.+||.|.
T Consensus 310 ~~~~l~tlr~q~m-----~~panvgqrkiK~~EQ~lq~~~v~~sp~pte~l~~~fnElrs~vvtl~ 370 (445)
T KOG2656|consen 310 LRVALVTLRSQRM-----KQPANVGQRKIKRLEQELQELGVRLSPAPTEQLCKSFNELRSDVVTLL 370 (445)
T ss_pred chhhhhccchhhc-----cCccccchhhhHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 699999999999999999999999999775 9999999999998764
No 2
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.95 E-value=3.1e-29 Score=227.27 Aligned_cols=128 Identities=20% Similarity=0.312 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCC----ccC--------CCCccchhcccccCCCCCCCCCCCCCCCccCCCcccc
Q 017704 222 KDAEVLAEAKRITDSRMASRAAEEPEMP----VAS--------HVGSESADRAVVLGDTVSPSSNIQLPSATVVPSTSII 289 (367)
Q Consensus 222 EEe~L~~ElkrIe~~Rk~er~~~~~~l~----~a~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (367)
||++|+.|||+|| +||+|||+++|||+ +++ ++..++.++++++++ ++....+.... .++...
T Consensus 1 EEe~Li~ELrKIE-~RKkEREKK~qDLqkLit~ad~~~~~~~~~a~~rk~ekk~~kKk----~~~~~~~~~~~-~~~~v~ 74 (176)
T PF05499_consen 1 EEEMLIAELRKIE-ARKKEREKKTQDLQKLITAADQQPTPATNTAEARKTEKKSSKKK----LPQKARPSKKK-ESPAVP 74 (176)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCCCCccHhhhhhhhccCCcc----cccCCCccccc-ccccch
Confidence 7999999999999 79999999999983 444 344556777665552 21111221111 111113
Q ss_pred cccccchhhhcccceeeehHHHHHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcc--hhhhhhhhccchhe
Q 017704 290 ADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVCSCFLNC--ECHAYTHFYCHVIY 360 (367)
Q Consensus 290 ~~~~~~~~~~r~~gvyLRs~~~~~~~q~~~~~~G~r~~K~veq~L~elgv~~~~~~~--~c~~~~~~~~~~~~ 360 (367)
+.++|+|+++|++|||||||+| ++|+++|||++|+|||+|+||||+++|||+ +|..|++||.|+++
T Consensus 75 ~~agikFpd~k~~GV~LRSq~m-----klp~~vGqKk~K~iEq~L~elgv~~~PmPTe~Ic~~fneLRsdivl 142 (176)
T PF05499_consen 75 ETAGIKFPDFKSAGVHLRSQRM-----KLPSSVGQKKTKAIEQFLQELGVDLNPMPTEEICQEFNELRSDIVL 142 (176)
T ss_pred hhhccccccccCCceEeeeccc-----ccCcchhhHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999 799999999999999999999999999998 99999999999864
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.63 E-value=3e-05 Score=52.91 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 129 MWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fD-LRfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
.||.+|...|+.+++.|+ .+|-.|+..++. ||.++++.|||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHh
Confidence 499999999999999999 999999988865 9999999999875
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.39 E-value=9.7e-05 Score=50.96 Aligned_cols=45 Identities=31% Similarity=0.609 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fD-LRfiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
..||.+|...|..++..|+ .+|-.|+..++ .||..|++.|||.+-
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4699999999999999999 99999998876 899999999999763
No 5
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.35 E-value=6.2e-05 Score=54.39 Aligned_cols=44 Identities=32% Similarity=0.669 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHhhhcCce-eEEEecCCCCCCCHHHHHHHHHHH
Q 017704 129 MWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLR-fiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
.||.||.+.|.++++.|+-. |-.|++.++..||..+++.|||..
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 69999999999999999999 999999999999999999999963
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.03 E-value=0.00023 Score=53.15 Aligned_cols=41 Identities=32% Similarity=0.647 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHH
Q 017704 130 WTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (367)
Q Consensus 130 WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~ 171 (367)
||.||.+.|+.|+..|+-.|--|+..+ +.||..+++.||+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL-GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS-TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH-CcCCHHHHHHHHHH
Confidence 999999999999999999999999998 48999999999999
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.23 E-value=0.0095 Score=57.80 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=53.8
Q ss_pred HHHhhcC----CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 017704 120 EYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 181 (367)
Q Consensus 120 EY~~~L~----d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~~R~ 181 (367)
=|..||. ...||.||-+.|+++...|+=+|..|+..+ +.||--++|.|||++.++.+..+.
T Consensus 67 RW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-pGRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 67 RWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRI-PGRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred HHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhc-CCCCHHHHHHHHHHHHhHHHHhcC
Confidence 3777774 458999999999999999999999999866 679999999999999999887765
No 8
>PLN03091 hypothetical protein; Provisional
Probab=96.09 E-value=0.0088 Score=62.15 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=54.8
Q ss_pred HHHHhhcC----CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 017704 119 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAP 182 (367)
Q Consensus 119 eEY~~~L~----d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~~R~~ 182 (367)
+=|..||. ...||+||-..|++|.+.|+=+|.-|+..+ +.||--++|.|||++.++.++.+..
T Consensus 55 ERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~L-PGRTDnqIKNRWnslLKKklr~~~I 121 (459)
T PLN03091 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-PGRTDNEIKNLWNSCLKKKLRQRGI 121 (459)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34777774 357999999999999999999999999765 6899999999999999999888764
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=80.27 E-value=1.1 Score=43.86 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=44.2
Q ss_pred cCCCCCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHHHHHHH
Q 017704 125 LTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVSRA 175 (367)
Q Consensus 125 L~d~~WTkeETDyLFdLcr~fD-LRfiVI~DRy~~~RtvEDLK~RYY~V~~k 175 (367)
|+-..||.||-..|..++++|+ -+|-.|+-+.+..||--..++||...-+-
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P 74 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRP 74 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhch
Confidence 4556799999999999999998 58999998877889999999999877543
No 10
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=74.54 E-value=0.81 Score=36.07 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHhhh--cCcee------------EEEecCC---CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 017704 128 PMWTKEETDQLFELCER--FDLRF------------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAP 182 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~--fDLRf------------iVI~DRy---~~~RtvEDLK~RYY~V~~kl~~~R~~ 182 (367)
..||.+||..|+++..+ ++.+| -.|++.. +..||.++++.++=.+.+.+-..+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 36999999999999999 66654 2333332 35899999999999999999988764
No 11
>PLN03091 hypothetical protein; Provisional
Probab=55.39 E-value=5.7 Score=41.92 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=42.7
Q ss_pred hhcCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 123 KYLTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 123 ~~L~d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
.-|+-..||.||-..|..+..+|+- .|-.|+...+..||--+.++||+.+-
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 3455667999999999999999996 59999877667899999999997653
No 12
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=53.48 E-value=6.8 Score=34.26 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=19.7
Q ss_pred CHHHHHhhcCCCCCCHHHHHHHHHHhhhcC
Q 017704 117 TDEEYEKYLTDPMWTKEETDQLFELCERFD 146 (367)
Q Consensus 117 tdeEY~~~L~d~~WTkeETDyLFdLcr~fD 146 (367)
++--|...+-..+||++|++-.++||++++
T Consensus 25 ~k~PFy~LvI~~~Ltkeevee~~~lce~l~ 54 (113)
T PF08963_consen 25 EKYPFYALVIRKGLTKEEVEEFLRLCEELS 54 (113)
T ss_dssp TT-HHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333344445567899999999999999853
No 13
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=47.42 E-value=15 Score=35.00 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=45.1
Q ss_pred CCCCceecccccccCCCCeEEeeeeeccCCCCCCCCCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc
Q 017704 66 EKITWQWLPFTNSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF 145 (367)
Q Consensus 66 k~~~W~w~pFtN~AR~DgL~L~HWvr~~~~~~~~~dY~FAKfN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~f 145 (367)
++-=|.|.-| |++|+=++.=+-|++.. =|+=||-|.|+.+..+.+.. -=
T Consensus 6 rpdl~~Ws~f-n~~~n~dfng~~~~~p~-------------GnilIDP~~ls~~~~~~l~a-----------------~g 54 (199)
T PF14597_consen 6 RPDLFSWSWF-NEARNLDFNGHAWRRPE-------------GNILIDPPPLSAHDWKHLDA-----------------LG 54 (199)
T ss_dssp STTEEEEEEE-ETTTTEEEEEEEE--TT---------------EEES-----HHHHHHHHH-----------------TT
T ss_pred CCccchhhhc-ChhhccCceeEEEEcCC-------------CCEEecCccccHHHHHHHHh-----------------cC
Confidence 3445888888 66788777778898862 26778899999999875432 23
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHH
Q 017704 146 DLRFIVIADRFPSSRTVEELKDRYY 170 (367)
Q Consensus 146 DLRfiVI~DRy~~~RtvEDLK~RYY 170 (367)
.++|||+.-| +..|.-++..++||
T Consensus 55 gv~~IvLTn~-dHvR~A~~ya~~~~ 78 (199)
T PF14597_consen 55 GVAWIVLTNR-DHVRAAEDYAEQTG 78 (199)
T ss_dssp --SEEE-SSG-GG-TTHHHHHHHS-
T ss_pred CceEEEEeCC-hhHhHHHHHHHHhC
Confidence 7899999866 66899999999998
No 14
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=43.66 E-value=19 Score=37.52 Aligned_cols=26 Identities=50% Similarity=0.912 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCC
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRF 156 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy 156 (367)
-||+||-.-|-+||++||+| ||.|=.
T Consensus 174 vwt~eeL~~i~elc~kh~v~--VISDEI 199 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVR--VISDEI 199 (388)
T ss_pred cccHHHHHHHHHHHHHcCCE--EEeecc
Confidence 49999999999999999997 677764
No 15
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=40.18 E-value=55 Score=25.04 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCCChHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Q 017704 163 EELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRIT 234 (367)
Q Consensus 163 EDLK~RYY~V~~kl~~~R~~~~~~~~~~~l~~~~fd~~~E~~RK~~L~~ll~RT~~q~~EEe~L~~ElkrIe 234 (367)
|+|..||-.+|..+...|. .|...++.+|...|+. =+.|+.+++.|.
T Consensus 1 d~Lw~~F~~a~~~~~~~~~--------------~~~~~~~~~~~~n~~~-----------K~~Li~~~~~l~ 47 (77)
T PF03993_consen 1 DELWKRFRAACDAFFDRRK--------------EFFEEQDAEREENLEK-----------KEALIEEAEALA 47 (77)
T ss_pred CHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 5799999999999998875 3555666665554442 135666666554
No 16
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=40.13 E-value=12 Score=38.32 Aligned_cols=47 Identities=30% Similarity=0.450 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 125 L~d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
+-+++|+-.|--.|.+-|..-+| .|-=|+|-.+ +|+-||.|+.||..
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~ 108 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKM 108 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 34789999999999999999998 6888887655 99999999999864
No 17
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.25 E-value=64 Score=30.31 Aligned_cols=114 Identities=24% Similarity=0.302 Sum_probs=59.9
Q ss_pred HHHHHHH-HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccCCCCccchhcccccCCCCCCCCCCCCC
Q 017704 200 SQEVERK-RALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADRAVVLGDTVSPSSNIQLP 278 (367)
Q Consensus 200 ~~E~~RK-~~L~~ll~RT~~q~~EEe~L~~ElkrIe~~Rk~er~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (367)
-+|+||| +-|.+|++.+.+|. +...-..|.++.+.. ..+ + -++ .+ .++......+
T Consensus 16 KkEREKK~qDLqkLit~ad~~~-~~~~~~a~~rk~ekk--~~k--K--k~~---------------~~--~~~~~~~~~~ 71 (176)
T PF05499_consen 16 KKEREKKTQDLQKLITAADQQP-TPATNTAEARKTEKK--SSK--K--KLP---------------QK--ARPSKKKESP 71 (176)
T ss_pred HHHHHHHHHHHHHHHhhccccC-CCCCccHhhhhhhhc--cCC--c--ccc---------------cC--CCcccccccc
Confidence 4799999 57999998887665 444555666665521 000 0 111 00 0011010011
Q ss_pred CCccCCCcccccccccchhhhcccceeeeh-------HHHHHHHHHhcccchhhHHHHHHHHHHHhC
Q 017704 279 SATVVPSTSIIADSASTLASLRMLRVYLRT-------YALEQMVQAASSSAGLRTIKRVEQALQELG 338 (367)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~r~~gvyLRs-------~~~~~~~q~~~~~~G~r~~K~veq~L~elg 338 (367)
. +.....+++++.......||++++-|=+ .+++|+.+.+....----+..|=+...||.
T Consensus 72 ~-v~~~agikFpd~k~~GV~LRSq~mklp~~vGqKk~K~iEq~L~elgv~~~PmPTe~Ic~~fneLR 137 (176)
T PF05499_consen 72 A-VPETAGIKFPDFKSAGVHLRSQRMKLPSSVGQKKTKAIEQFLQELGVDLNPMPTEEICQEFNELR 137 (176)
T ss_pred c-chhhhccccccccCCceEeeecccccCcchhhHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Confidence 0 0112347788888888888888876532 344556665554444344555555555554
No 18
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=33.09 E-value=42 Score=25.96 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~ 178 (367)
.+.||.+|+.-|.+|++++ ..||.++....-|..+-..-.-.|+..|..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~---~~il~~k~~~~~~~~~k~~~W~~I~~~lN~ 50 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKH---KDILENKFSDSVSNKEKRKAWEEIAEELNA 50 (78)
T ss_pred CCCCCHHHHHHHHHHHHHh---HHHHhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999884 455666554444555544444455555544
No 19
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=33.09 E-value=44 Score=31.86 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHH-HHHHHHhc
Q 017704 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV-SRAILIAR 180 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V-~~kl~~~R 180 (367)
-..||.||.+-|+.|-..|+-||-+|+ ++-+.||--++|--.=+- ++++....
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA-~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIA-GRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHH-hhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999998 445689999998766443 45555544
No 20
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=31.33 E-value=60 Score=28.10 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHhhhcCceeEEEecCCCC---CCCHHHHHHHHHHHHHHHHHhcCCC
Q 017704 130 WTKEETDQLFELCERFDLRFIVIADRFPS---SRTVEELKDRYYGVSRAILIARAPS 183 (367)
Q Consensus 130 WTkeETDyLFdLcr~fDLRfiVI~DRy~~---~RtvEDLK~RYY~V~~kl~~~R~~~ 183 (367)
+++.--|.+..+|+..+++++++.+-++. ..-+.++-.=.-+++++|+..|.+.
T Consensus 74 l~R~~~d~~~~~l~~~gv~l~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 130 (134)
T cd03769 74 LARFGFELLEELFKAYGVEIVVINQEENEELEQELVEDLIEIITSFSARLYGKRSHK 130 (134)
T ss_pred HHHhhHHHHHHHHHHCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 67777778888999999999999988762 3677888888999999999988865
No 21
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=30.48 E-value=46 Score=28.85 Aligned_cols=29 Identities=38% Similarity=0.665 Sum_probs=22.1
Q ss_pred HHHhhhcCce---eEEE-----ec-----CCCCC-CCHHHHHH
Q 017704 139 FELCERFDLR---FIVI-----AD-----RFPSS-RTVEELKD 167 (367)
Q Consensus 139 FdLcr~fDLR---fiVI-----~D-----Ry~~~-RtvEDLK~ 167 (367)
-+||.+|+++ |+.| .+ .|... ||.++|..
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~ 110 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQR 110 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHH
Confidence 4899999997 7755 22 47775 99999974
No 22
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=29.22 E-value=37 Score=34.14 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=29.7
Q ss_pred HHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhhhhh
Q 017704 316 QAASSSAGLRTIKRVEQALQELGVCSCFLNCECHAYTH 353 (367)
Q Consensus 316 q~~~~~~G~r~~K~veq~L~elgv~~~~~~~~c~~~~~ 353 (367)
|.+-+.-=..-+|.+||+|+++.+.+.|++.+-.+|.+
T Consensus 303 hnAiaAYfsGNak~LE~tlkqf~iklkpp~a~~pswle 340 (341)
T KOG3876|consen 303 HNAIAAYFSGNAKQLEQTLKQFNIKLKPPGAFIPSWLE 340 (341)
T ss_pred HHHHHHHhcccHHHHHHHHHHhceecCCCCCCcchhcc
Confidence 44444444456789999999999999999998887753
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=28.99 E-value=41 Score=25.73 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHhhhcCc-ee---EEEecCCCCCC-CHHHHHHHH
Q 017704 129 MWTKEETDQLFELCERFDL-RF---IVIADRFPSSR-TVEELKDRY 169 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDL-Rf---iVI~DRy~~~R-tvEDLK~RY 169 (367)
.||.||-+-..+=++.|+. .| --|.+-+..++ |.+.++.++
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 5999999999999999998 88 66677776666 888887764
No 24
>PRK08068 transaminase; Reviewed
Probab=28.72 E-value=54 Score=32.48 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy~ 157 (367)
.|+.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 183 ~~s~~~~~~l~~la~~~~~-~ii~Deay~ 210 (389)
T PRK08068 183 VATKAFFEETVAFAKKHNI-GVVHDFAYG 210 (389)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEehhhh
Confidence 4999999999999999998 777777663
No 25
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.26 E-value=46 Score=32.23 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=47.0
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhh-----------cCceeEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 017704 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER-----------FDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (367)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~-----------fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~ 178 (367)
.|+++.||-|-|. =+.+|.++||+|+++ .+.|.-||-|+ ++=-++|++..-.+ ..
T Consensus 50 ~lTvYaFS~eN~~-------R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~---~~Lp~~~~~~i~~~----e~ 115 (233)
T PRK14841 50 YLTAFSFSTENWK-------RPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRK---EGLPEKVLKKWQEV----EE 115 (233)
T ss_pred EEEEEeeeHhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCh---hhCCHHHHHHHHHH----HH
Confidence 4677788877764 367999999999864 47888888876 22224554433222 22
Q ss_pred hcCCCCCCCCCCCccCCCCChHHHHHH
Q 017704 179 ARAPSPTDVSGHPLVKDPYNVSQEVER 205 (367)
Q Consensus 179 ~R~~~~~~~~~~~l~~~~fd~~~E~~R 205 (367)
.- ..++.. .-.+-++|+...|+.+
T Consensus 116 ~T-~~~~~~--~Lnia~~Yggr~EI~~ 139 (233)
T PRK14841 116 KT-KEFDRM--TLVIAFNYGGRREILD 139 (233)
T ss_pred Hh-cCCCCc--EEEEEecCCCHHHHHH
Confidence 21 112111 1112278999888754
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=27.17 E-value=36 Score=35.98 Aligned_cols=47 Identities=34% Similarity=0.576 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 125 L~d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
+-+++||-+|--.|++-|..|++ .|-=|+|-.+ .+|=||-|+.|+..
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHH
Confidence 56789999999999999999998 6877777655 89999999999874
No 27
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.42 E-value=54 Score=31.94 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=30.6
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc-----------CceeEEEecC
Q 017704 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 155 (367)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~f-----------DLRfiVI~DR 155 (367)
.|+++.||-|-|. =+.+|.+.||+|+.+| +.|.-||-|+
T Consensus 55 ~vTvYaFS~eN~~-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~ 104 (241)
T PRK14842 55 NISLYAFSTENWK-------RPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSR 104 (241)
T ss_pred EEEEEEeehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4677788887774 3679999999998765 6788888776
No 28
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=25.34 E-value=33 Score=38.33 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHhhhcCceeEEEecCC---CCCCCHHHHHHHHHHHH
Q 017704 126 TDPMWTKEETDQLFELCERFDLRFIVIADRF---PSSRTVEELKDRYYGVS 173 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fDLRfiVI~DRy---~~~RtvEDLK~RYY~V~ 173 (367)
....||.||-+-|..|+.+--.-=+|=|||. -..||--.|--|||.+-
T Consensus 304 ~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~L 354 (939)
T KOG0049|consen 304 SEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTL 354 (939)
T ss_pred HhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheecc
Confidence 3468999999999999999999999999985 36899999999999764
No 29
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=24.91 E-value=53 Score=31.33 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHhhhcCce-eEEEecCCCCCCC
Q 017704 128 PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRT 161 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDLR-fiVI~DRy~~~Rt 161 (367)
..||.||=+-|.++.+.|+-+ |..|....+-.|+
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~ 44 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRC 44 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCcc
Confidence 579999999999999999988 9999988764443
No 30
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.74 E-value=62 Score=31.55 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=31.1
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh---------hcCceeEEEecC
Q 017704 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE---------RFDLRFIVIADR 155 (367)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr---------~fDLRfiVI~DR 155 (367)
.|+++.||-|-+. =+.+|.++||+|+. +++.|.-||-|+
T Consensus 57 ~lT~YaFS~EN~k-------R~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~iG~~ 104 (242)
T PRK14838 57 FLTLYTFSTENWN-------RPSDEVAALMSLLLDSIEEETFMKNNIRFRIIGDI 104 (242)
T ss_pred EEEEEeechhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCh
Confidence 4677788877774 36899999999976 578899999877
No 31
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=24.58 E-value=1.2e+02 Score=23.90 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=28.0
Q ss_pred ceeEEEecCCCC-C--CCHHHHHHHHHHHHHHHHHhc
Q 017704 147 LRFIVIADRFPS-S--RTVEELKDRYYGVSRAILIAR 180 (367)
Q Consensus 147 LRfiVI~DRy~~-~--RtvEDLK~RYY~V~~kl~~~R 180 (367)
|+.++++||-+. + -.++.||.=-..|.++++..-
T Consensus 9 Lk~iL~~dR~~~~~~~~~l~~lk~eil~viskYv~i~ 45 (70)
T PF03776_consen 9 LKLILAHDRGGLSPQPDYLEQLKKEILEVISKYVEID 45 (70)
T ss_dssp EEEEEEEECCSC-CTTSSHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhheecC
Confidence 788999999863 4 699999999999999999764
No 32
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=23.73 E-value=67 Score=31.06 Aligned_cols=39 Identities=33% Similarity=0.623 Sum_probs=30.9
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh-----------hcCceeEEEecC
Q 017704 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 155 (367)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr-----------~fDLRfiVI~DR 155 (367)
.++++.||-|-|. =+.+|.+.||+|.+ +.+.|.-||-|+
T Consensus 46 ~lT~yaFStEN~~-------Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 95 (226)
T TIGR00055 46 CLTLYAFSTENWK-------RPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDL 95 (226)
T ss_pred EEEEEEeehhhcC-------cCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4667778877764 36799999999965 678999999887
No 33
>PRK06620 hypothetical protein; Validated
Probab=23.45 E-value=1.4e+02 Score=27.84 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHH
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRY 169 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RY 169 (367)
.|+.++--|||+.|++=+-..++-+|+.++..++.||+.|.
T Consensus 96 ~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 96 NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 58777888999999999987777788877777789999886
No 34
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=23.26 E-value=82 Score=31.26 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy~ 157 (367)
.||.++...|.++|+++|+ |+|+-|=|.
T Consensus 182 ~~s~~~~~~l~~~a~~~~~-~ii~De~y~ 209 (396)
T PRK09147 182 VLPLDDWKKLFALSDRYGF-VIASDECYS 209 (396)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEeecccc
Confidence 5999999999999999987 555555553
No 35
>PRK07681 aspartate aminotransferase; Provisional
Probab=22.97 E-value=84 Score=31.29 Aligned_cols=28 Identities=7% Similarity=0.237 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy~ 157 (367)
-||.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 182 ~~s~~~~~~i~~~a~~~~~-~iI~De~y~ 209 (399)
T PRK07681 182 MAHEDFFKEVIAFAKKHNI-IVVHDFAYA 209 (399)
T ss_pred CCCHHHHHHHHHHHHHcCe-EEEEeccch
Confidence 4999999999999999998 777777664
No 36
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.28 E-value=1.6e+02 Score=29.36 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=64.1
Q ss_pred ccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCceeEEE----ecCCCCCCCHHHHHHHHHHHHHHHHHh-cCCCCCC
Q 017704 112 DVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVI----ADRFPSSRTVEELKDRYYGVSRAILIA-RAPSPTD 186 (367)
Q Consensus 112 ~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~fDLRfiVI----~DRy~~~RtvEDLK~RYY~V~~kl~~~-R~~~~~~ 186 (367)
+..++|=+|=+.-|.--+||++|--.|-.+|.+.+.|++-+ |-||+-.--=+-+-++=+.|..+-+.. |.-.
T Consensus 33 DFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLG--- 109 (287)
T COG3623 33 DFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLG--- 109 (287)
T ss_pred CeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhC---
Confidence 45567777777777778999999999999999999999988 678873222355667777777665553 2211
Q ss_pred CCCCCccC--CCCChHHHHHHHHHHHHH
Q 017704 187 VSGHPLVK--DPYNVSQEVERKRALSMV 212 (367)
Q Consensus 187 ~~~~~l~~--~~fd~~~E~~RK~~L~~l 212 (367)
+-.-+|-. .-|-+.-|.-|+++.+.+
T Consensus 110 IRtIQLAGYDVYYE~~d~eT~~rFi~g~ 137 (287)
T COG3623 110 IRTIQLAGYDVYYEEADEETRQRFIEGL 137 (287)
T ss_pred ceeEeeccceeeeccCCHHHHHHHHHHH
Confidence 00112222 234445556666666655
No 37
>PRK06290 aspartate aminotransferase; Provisional
Probab=21.21 E-value=92 Score=31.63 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy~ 157 (367)
-|+.+|-..|.++|+++++ |+|+-|-|.
T Consensus 195 v~s~e~l~~l~~la~~~~~-~iI~DEaY~ 222 (410)
T PRK06290 195 VATKEFYEEVVDFAKENNI-IVVQDAAYA 222 (410)
T ss_pred CCCHHHHHHHHHHHHHcCe-EEEEecchh
Confidence 4999999999999999998 777777664
No 38
>PRK06855 aminotransferase; Validated
Probab=21.02 E-value=88 Score=31.88 Aligned_cols=27 Identities=22% Similarity=0.637 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCC
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRF 156 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy 156 (367)
.||.++-..|.++|++||+ |||.-|=|
T Consensus 187 ~~s~~~~~~l~~~a~~~~~-~II~De~Y 213 (433)
T PRK06855 187 VYPKEILREIVDIAREYDL-FIICDEIY 213 (433)
T ss_pred CCCHHHHHHHHHHHHHcCC-EEEEeccc
Confidence 5999999999999999974 44444444
No 39
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=20.75 E-value=3e+02 Score=24.07 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhcCceeEEE--ecCCCCCCCHHHH
Q 017704 132 KEETDQLFELCERFDLRFIVI--ADRFPSSRTVEEL 165 (367)
Q Consensus 132 keETDyLFdLcr~fDLRfiVI--~DRy~~~RtvEDL 165 (367)
.++.+++-++|+.+++.+.++ ..-.....+++++
T Consensus 44 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 44 DEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 589999999999999999998 3222234566654
No 40
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=20.74 E-value=84 Score=30.14 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=30.7
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc-----------CceeEEEecC
Q 017704 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 155 (367)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~f-----------DLRfiVI~DR 155 (367)
.++++.||-|-|. =+.+|.+.||+|++.| +.|.-||-|+
T Consensus 47 ~lTvyaFS~eN~~-------R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iGd~ 96 (221)
T cd00475 47 EVTLYAFSTENWK-------RPKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDL 96 (221)
T ss_pred EEEEEeechhhhC-------cCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 4667777877663 3678999999998866 7889999887
No 41
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.48 E-value=83 Score=30.68 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 017704 218 HQERKDAEVLAEAKRITDSRMASRAAEEP 246 (367)
Q Consensus 218 ~q~~EEe~L~~ElkrIe~~Rk~er~~~~~ 246 (367)
+...|+++|+.||.+|-+-|..++.++++
T Consensus 143 ddeDd~~~Ll~ELekIKkER~ee~~~~e~ 171 (244)
T PF04889_consen 143 DDEDDTAALLRELEKIKKERAEEKARKEE 171 (244)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999888776666544443
No 42
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=20.46 E-value=1e+02 Score=30.84 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy~ 157 (367)
.||.++-..|.++|+++|+ |+|+-|-|.
T Consensus 192 ~~s~~~~~~l~~~a~~~~~-~iI~De~Y~ 219 (409)
T PRK07590 192 VLTKEQLKAWVDYAKENGS-LILFDAAYE 219 (409)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEEccch
Confidence 5999999999999999987 666666664
No 43
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.44 E-value=85 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=30.0
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh-----------hcCceeEEEecC
Q 017704 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 155 (367)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr-----------~fDLRfiVI~DR 155 (367)
.|+++.||-|-|. =+.+|.+.||+|++ +.+.|.-||.|+
T Consensus 114 ~lTvYaFStEN~k-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~iG~~ 163 (296)
T PRK14827 114 WLSLYAFSTENWK-------RSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSR 163 (296)
T ss_pred EEEEeeecchhhc-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEech
Confidence 4667777777664 36789999999965 458889899877
No 44
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=20.42 E-value=1e+02 Score=30.63 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 017704 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDLRfiVI~DRy~ 157 (367)
.||.++-..|.++|+++|+ |+|+-|-|.
T Consensus 188 ~~s~~~~~~l~~~a~~~~~-~ii~De~Y~ 215 (396)
T PRK09257 188 DLTPEQWDELAELLKERGL-IPFLDIAYQ 215 (396)
T ss_pred CCCHHHHHHHHHHHHhCCc-EEEEecccc
Confidence 4999999999999999988 566666665
Done!