Query 017704
Match_columns 367
No_of_seqs 142 out of 192
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 03:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4iej_A DNA methyltransferase 1 100.0 3.1E-43 1E-47 288.9 5.1 86 99-184 2-91 (93)
2 3hm5_A DNA methyltransferase 1 100.0 6.4E-40 2.2E-44 269.6 4.9 85 99-183 2-90 (93)
3 1x58_A Hypothetical protein 49 97.4 3.9E-05 1.3E-09 58.7 1.6 47 128-174 9-57 (62)
4 3osg_A MYB21; transcription-DN 97.2 0.00024 8.3E-09 59.8 3.9 56 121-177 52-111 (126)
5 2cu7_A KIAA1915 protein; nucle 97.0 0.00028 9.6E-09 54.2 2.2 53 126-179 8-60 (72)
6 2k9n_A MYB24; R2R3 domain, DNA 96.8 0.00054 1.9E-08 56.1 2.4 52 127-179 53-104 (107)
7 1guu_A C-MYB, MYB proto-oncoge 96.7 0.00084 2.9E-08 48.1 2.6 47 126-173 2-49 (52)
8 3sjm_A Telomeric repeat-bindin 96.6 0.00068 2.3E-08 51.4 2.0 47 128-174 12-60 (64)
9 2din_A Cell division cycle 5-l 96.6 0.001 3.5E-08 50.1 2.9 53 126-180 8-60 (66)
10 1w0t_A Telomeric repeat bindin 96.5 0.00073 2.5E-08 48.8 1.5 47 128-174 3-51 (53)
11 1gv2_A C-MYB, MYB proto-oncoge 96.4 0.0012 4E-08 53.5 2.0 48 127-175 56-103 (105)
12 2llk_A Cyclin-D-binding MYB-li 96.3 0.00082 2.8E-08 52.6 0.4 44 127-172 23-66 (73)
13 2ltp_A Nuclear receptor corepr 95.3 0.00071 2.4E-08 54.3 0.0 51 125-176 14-64 (89)
14 2aje_A Telomere repeat-binding 96.2 0.0019 6.5E-08 53.9 2.4 49 127-175 13-65 (105)
15 1gvd_A MYB proto-oncogene prot 96.2 0.0021 7.3E-08 46.0 2.3 46 126-172 2-48 (52)
16 1ity_A TRF1; helix-turn-helix, 96.2 0.0019 6.3E-08 49.1 2.0 47 128-174 11-59 (69)
17 2ckx_A NGTRF1, telomere bindin 96.2 0.0019 6.6E-08 51.6 2.2 49 129-177 2-54 (83)
18 1x41_A Transcriptional adaptor 96.1 0.0016 5.3E-08 48.4 1.4 46 126-172 7-53 (60)
19 2elk_A SPCC24B10.08C protein; 96.1 0.0018 6.2E-08 47.9 1.7 47 126-172 8-55 (58)
20 2d9a_A B-MYB, MYB-related prot 96.0 0.0021 7.1E-08 47.4 1.7 46 126-172 7-53 (60)
21 2yum_A ZZZ3 protein, zinc fing 96.0 0.0015 5.1E-08 50.3 0.7 53 126-179 7-65 (75)
22 1h8a_C AMV V-MYB, MYB transfor 95.9 0.0018 6.2E-08 54.3 1.0 53 121-174 69-125 (128)
23 3zqc_A MYB3; transcription-DNA 95.9 0.0034 1.2E-07 53.0 2.6 56 121-177 44-103 (131)
24 2cqr_A RSGI RUH-043, DNAJ homo 95.8 0.0037 1.3E-07 48.8 2.4 46 127-173 18-67 (73)
25 2juh_A Telomere binding protei 95.5 0.0033 1.1E-07 53.7 0.9 49 128-176 18-70 (121)
26 2roh_A RTBP1, telomere binding 95.4 0.0036 1.2E-07 53.6 0.9 50 127-176 31-84 (122)
27 2cjj_A Radialis; plant develop 95.4 0.0073 2.5E-07 49.2 2.5 52 127-179 8-63 (93)
28 2dim_A Cell division cycle 5-l 95.2 0.0065 2.2E-07 46.1 1.7 47 125-172 7-54 (70)
29 2yus_A SWI/SNF-related matrix- 95.1 0.0053 1.8E-07 48.4 1.0 44 127-171 18-61 (79)
30 1h89_C C-MYB, MYB proto-oncoge 95.0 0.006 2.1E-07 52.9 1.0 53 121-174 100-156 (159)
31 1wgx_A KIAA1903 protein; MYB D 94.6 0.01 3.5E-07 46.6 1.2 45 127-172 8-56 (73)
32 2eqr_A N-COR1, N-COR, nuclear 94.5 0.011 3.8E-07 44.1 1.3 43 128-171 13-55 (61)
33 2cqq_A RSGI RUH-037, DNAJ homo 93.6 0.016 5.4E-07 45.1 0.6 43 127-171 8-54 (72)
34 3osg_A MYB21; transcription-DN 93.3 0.033 1.1E-06 46.6 2.2 46 127-173 11-56 (126)
35 1gv2_A C-MYB, MYB proto-oncoge 92.7 0.049 1.7E-06 43.8 2.3 47 125-172 2-49 (105)
36 2k9n_A MYB24; R2R3 domain, DNA 91.4 0.064 2.2E-06 43.6 1.5 43 129-172 3-46 (107)
37 1h89_C C-MYB, MYB proto-oncoge 90.3 0.15 5.1E-06 44.0 2.8 45 127-172 58-103 (159)
38 1h8a_C AMV V-MYB, MYB transfor 89.8 0.12 3.9E-06 43.2 1.7 45 127-172 27-72 (128)
39 3zqc_A MYB3; transcription-DNA 89.3 0.2 6.8E-06 42.1 2.8 45 128-173 3-48 (131)
40 4eef_G F-HB80.4, designed hema 89.3 0.078 2.7E-06 41.8 0.2 41 128-169 21-65 (74)
41 1ug2_A 2610100B20RIK gene prod 87.2 0.3 1E-05 40.0 2.5 49 129-178 35-86 (95)
42 2yqk_A Arginine-glutamic acid 81.6 0.65 2.2E-05 34.7 2.0 46 125-170 7-52 (63)
43 2lr8_A CAsp8-associated protei 82.0 0.31 1.1E-05 38.0 0.0 43 129-173 16-61 (70)
44 2iw5_B Protein corest, REST co 74.9 0.85 2.9E-05 42.9 1.0 44 127-171 133-176 (235)
45 2crg_A Metastasis associated p 70.3 2.3 7.8E-05 32.4 2.3 43 128-170 9-51 (70)
46 1ign_A Protein (RAP1); RAP1,ye 63.3 3.4 0.00012 39.1 2.4 45 128-173 9-59 (246)
47 4b4c_A Chromodomain-helicase-D 61.8 4.8 0.00017 35.6 3.1 44 128-172 8-55 (211)
48 2ebi_A DNA binding protein GT- 60.4 2.2 7.5E-05 33.1 0.5 56 127-182 4-72 (86)
49 4a69_C Nuclear receptor corepr 45.5 10 0.00036 30.3 2.2 43 128-171 44-86 (94)
50 1ofc_X ISWI protein; nuclear p 43.8 18 0.00062 35.0 4.0 59 113-173 91-155 (304)
51 4d9a_A 2-pyrone-4,6-dicarbaxyl 26.3 83 0.0028 29.1 5.3 63 101-165 40-112 (303)
52 2y9y_A Imitation switch protei 26.0 32 0.0011 34.2 2.5 60 113-173 104-169 (374)
53 3sgv_B Undecaprenyl pyrophosph 24.4 25 0.00086 33.2 1.3 39 110-155 64-113 (253)
54 3ku7_A MINE, cell division top 24.0 1.1E+02 0.0038 24.0 4.8 32 147-178 23-54 (80)
55 2kxo_A Cell division topologic 21.2 86 0.0029 25.3 3.8 33 147-179 22-57 (95)
56 3ugs_B Undecaprenyl pyrophosph 20.5 26 0.00089 32.5 0.6 39 110-155 53-102 (225)
No 1
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=100.00 E-value=3.1e-43 Score=288.91 Aligned_cols=86 Identities=50% Similarity=0.914 Sum_probs=69.6
Q ss_pred CCCCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCceeEEEecCCC----CCCCHHHHHHHHHHHHH
Q 017704 99 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 174 (367)
Q Consensus 99 ~~dY~FAKfN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~----~~RtvEDLK~RYY~V~~ 174 (367)
+++|+|||||++|+||+||+|||++||++++||+||||||||||++|||||+||+|||+ ..|||||||+|||+||+
T Consensus 2 ~~~y~FakfN~~v~ip~yt~eEY~~~L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp ------------CCCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCccccCCcCCCcccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999997 37999999999999999
Q ss_pred HHHHhcCCCC
Q 017704 175 AILIARAPSP 184 (367)
Q Consensus 175 kl~~~R~~~~ 184 (367)
+|+++|+++.
T Consensus 82 ~l~~~r~~~~ 91 (93)
T 4iej_A 82 KLANVRAVPG 91 (93)
T ss_dssp HHHHHTC---
T ss_pred HHHHhhCCCC
Confidence 9999998764
No 2
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.4e-40 Score=269.56 Aligned_cols=85 Identities=51% Similarity=0.931 Sum_probs=68.4
Q ss_pred CCCCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCceeEEEecCCC----CCCCHHHHHHHHHHHHH
Q 017704 99 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 174 (367)
Q Consensus 99 ~~dY~FAKfN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~----~~RtvEDLK~RYY~V~~ 174 (367)
+++|+|||||++++||+||+|||+.||++++||+|||||||+||++|||||+||+|||+ +.|||||||+|||+||+
T Consensus 2 ~~~y~fakfN~~~~i~~yt~eeY~~~L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp -------------CCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCchhccccCCCCccCHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999996 47999999999999999
Q ss_pred HHHHhcCCC
Q 017704 175 AILIARAPS 183 (367)
Q Consensus 175 kl~~~R~~~ 183 (367)
+|+++|+.+
T Consensus 82 ~l~~~r~~~ 90 (93)
T 3hm5_A 82 KLANVRAVP 90 (93)
T ss_dssp HHHHHTC--
T ss_pred HHHHhcCCC
Confidence 999999643
No 3
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.43 E-value=3.9e-05 Score=58.74 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHhhhcCceeEEEecCCC--CCCCHHHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDLRFIVIADRFP--SSRTVEELKDRYYGVSR 174 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDLRfiVI~DRy~--~~RtvEDLK~RYY~V~~ 174 (367)
..||.||+.+|+++.++|+-.|--|..-|. ..||-=|||+||+.+.+
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 469999999999999999999999998665 69999999999998765
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.18 E-value=0.00024 Score=59.85 Aligned_cols=56 Identities=27% Similarity=0.508 Sum_probs=48.0
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 017704 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 177 (367)
Q Consensus 121 Y~~~L~----d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~ 177 (367)
|..+|. ...||.||...|+++.+.|+-+|-.|+..+ +.||-.++|.||+.+.+++-
T Consensus 52 w~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 52 WKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFF-PGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp HHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTS-TTCCHHHHHHHHHHHHHHTT
T ss_pred HhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHc-CCCCHHHHHHHHHHHHHhcC
Confidence 555553 347999999999999999999999999765 47999999999999998864
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.98 E-value=0.00028 Score=54.20 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 017704 126 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~~ 179 (367)
....||.||-..|+++.+.|+-+|-.|+..+ +.||-.+.|.||+...++.+..
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 4467999999999999999999999999854 5699999999999998887654
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.76 E-value=0.00054 Score=56.05 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 017704 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~~ 179 (367)
...||.||-..|++++..|+-+|-.|+..+ +.||-.++|.||+.+.+++...
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFL-KNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHC-CCCCHHHHHHHHHHHHhhHHHh
Confidence 457999999999999999999999999755 5799999999999999987654
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=96.68 E-value=0.00084 Score=48.09 Aligned_cols=47 Identities=32% Similarity=0.490 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
+...||.||-..|.+++..|+- +|-.|+..++ .||-.+.++||+.+-
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4467999999999999999998 9999998875 699999999998763
No 8
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.64 E-value=0.00068 Score=51.45 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHhhhcCc-eeEEEecCCC-CCCCHHHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDL-RFIVIADRFP-SSRTVEELKDRYYGVSR 174 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~-~~RtvEDLK~RYY~V~~ 174 (367)
..||.||.+.|.+++++|+- .|-.|+.-++ ..||--++++||..+.+
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 46999999999999999995 8999998876 58999999999987653
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.001 Score=50.08 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 017704 126 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIAR 180 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~~R 180 (367)
....||.||-..|+++.+.|+-+|-.|+. +. .||-.+.++||....+..+..-
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 34579999999999999999999999999 65 4999999999999998887654
No 10
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=96.54 E-value=0.00073 Score=48.83 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHhhhcCc-eeEEEecCCCC-CCCHHHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 174 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~-~RtvEDLK~RYY~V~~ 174 (367)
..||.||...|.++...|+. +|-.|+..++. .||--++++||..+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 46999999999999999995 99999998864 6999999999998764
No 11
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.39 E-value=0.0012 Score=53.52 Aligned_cols=48 Identities=25% Similarity=0.467 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 175 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~k 175 (367)
...||.||-..|++++..|+-+|-.|+..+ +.||-.++|.||+.+.++
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTC-TTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCCCHHHHHHHc-CCCCHHHHHHHHHHHHhc
Confidence 467999999999999999999999999765 579999999999987654
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.27 E-value=0.00082 Score=52.62 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
-..||.||-+-|++|...|+-+|-.|+..+ .||--++|+||+.+
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~l--gRt~~q~knRw~~L 66 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAAL--GRSASSVKDRCRLM 66 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHH--TSCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHh--CCCHHHHHHHHHHH
Confidence 457999999999999999999999999998 99999999999965
No 13
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.25 E-value=0.00071 Score=54.29 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 017704 125 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAI 176 (367)
Q Consensus 125 L~d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl 176 (367)
+....||.||-..|+++...|+-+|-.|+..+ +.||..+.|.|||...+++
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l-~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMV-GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34467999999999999999999999999775 4799999999999877664
No 14
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.21 E-value=0.0019 Score=53.88 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-eeEEEecCCC---CCCCHHHHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRA 175 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~---~~RtvEDLK~RYY~V~~k 175 (367)
-..||.||++.|.+.+++|+- +|--|...|. ..||--|||+||....+.
T Consensus 13 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 346999999999999999998 9999998774 689999999999886653
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.20 E-value=0.0021 Score=46.03 Aligned_cols=46 Identities=28% Similarity=0.547 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
+...||.||...|.++...|+- +|-.|+..+ +.||-.+.++||+..
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 4567999999999999999997 699999876 479999999999864
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.19 E-value=0.0019 Score=49.11 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHhhhcCc-eeEEEecCCCC-CCCHHHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 174 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~-~RtvEDLK~RYY~V~~ 174 (367)
..||.||...|.+++..|+. +|-.|+..++. .||--++++||..+.+
T Consensus 11 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 11 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 46999999999999999995 99999998864 8999999999997654
No 17
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.19 E-value=0.0019 Score=51.62 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHhhhcCc-eeEEEecCCC---CCCCHHHHHHHHHHHHHHHH
Q 017704 129 MWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAIL 177 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDL-RfiVI~DRy~---~~RtvEDLK~RYY~V~~kl~ 177 (367)
.||.||.+.|.+++++|+. +|-.|...|. ..||--|||+||....++-.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 5999999999999999999 9999987632 58999999999999877543
No 18
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.15 E-value=0.0016 Score=48.39 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
....||.||-..|.++.+.|+. +|-.|+..++ .||-.+.++||...
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 53 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4467999999999999999995 9999998774 59999999999864
No 19
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.13 E-value=0.0018 Score=47.85 Aligned_cols=47 Identities=32% Similarity=0.484 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 126 TDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fD-LRfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
....||.||-..|++++++|+ -+|-.|+...+..||-.+.++||..+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 346799999999999999999 69999998777689999999999764
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.05 E-value=0.0021 Score=47.41 Aligned_cols=46 Identities=33% Similarity=0.562 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
....||.||...|.++...|+. +|-.|+..++ .||--+.++||+.+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 4457999999999999999995 9999998874 69999999999864
No 21
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.99 E-value=0.0015 Score=50.26 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHhhhcC------ceeEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 017704 126 TDPMWTKEETDQLFELCERFD------LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (367)
Q Consensus 126 ~d~~WTkeETDyLFdLcr~fD------LRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~~ 179 (367)
....||.||-..|.++...|+ -+|-.|+..++ .||..+.++||.....++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhc
Confidence 345799999999999999999 79999987764 599999999998777666544
No 22
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.93 E-value=0.0018 Score=54.35 Aligned_cols=53 Identities=25% Similarity=0.468 Sum_probs=45.1
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHH
Q 017704 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSR 174 (367)
Q Consensus 121 Y~~~L~----d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~ 174 (367)
|..+|. ...||.||-..|+++...|+-+|-.|+..+ +.||-.++|.||+.+.+
T Consensus 69 w~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 69 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp HHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGS-TTCCHHHHHHHHHTTTT
T ss_pred HHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHC-CCCCHHHHHHHHHHHHh
Confidence 555553 457999999999999999999999999765 57999999999997654
No 23
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.92 E-value=0.0034 Score=53.04 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=46.9
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 017704 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 177 (367)
Q Consensus 121 Y~~~L~----d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~ 177 (367)
|..+|. ...||.||-..|+++...|+-+|-.|+..+ +.||--++|.||++..++-+
T Consensus 44 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 44 WFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLI-PGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp HHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTS-TTCCHHHHHHHHHHTTGGGC
T ss_pred HhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-CCCCHHHHHHHHHHHHHHHh
Confidence 555553 357999999999999999999999999765 48999999999998766544
No 24
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.85 E-value=0.0037 Score=48.80 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHhhhcC----ceeEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fD----LRfiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
...||.+|...|..+...|+ -||-.|+...+ .||.++.+.||..++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLV 67 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 45799999999999999999 69999998776 699999999998764
No 25
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.50 E-value=0.0033 Score=53.72 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHhhhcCc-eeEEEecCCC---CCCCHHHHHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAI 176 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~---~~RtvEDLK~RYY~V~~kl 176 (367)
..||.||.+.|.+++++|+- +|--|...+. ..||--|||+||....+.-
T Consensus 18 ~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 18 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 46999999999999999998 9999988764 5899999999999988763
No 26
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.42 E-value=0.0036 Score=53.56 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-eeEEEecCCC---CCCCHHHHHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAI 176 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~---~~RtvEDLK~RYY~V~~kl 176 (367)
-..||.||.+.|.+++++|+- +|--|...+. ..||--|||+||....+.-
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 346999999999999999998 9999987642 6899999999998877643
No 27
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=95.36 E-value=0.0073 Score=49.22 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHhhhcC----ceeEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 017704 127 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fD----LRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~~ 179 (367)
...||.||-..|..+...|+ -||-.|+...+ .||.++.|.||-.....+...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999996 68999998876 599999999999988876443
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.24 E-value=0.0065 Score=46.10 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=41.9
Q ss_pred cCCCCCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 125 LTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 125 L~d~~WTkeETDyLFdLcr~fD-LRfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
++...||.||-..|.++.+.|+ -+|-.|+..++ .||-.+.++||+.+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 4456799999999999999999 79999998875 79999999999875
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.15 E-value=0.0053 Score=48.45 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~ 171 (367)
...||.||...|.++.+.|+-+|--|+...+ .||.++.++||..
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~-~RT~~qcr~r~~~ 61 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYKDDWNKVSEHVG-SRTQDECILHFLR 61 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSSSCHHHHHHHHS-SCCHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHHH
Confidence 4579999999999999999999999987655 5999999999963
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.99 E-value=0.006 Score=52.85 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=45.7
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHHH
Q 017704 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSR 174 (367)
Q Consensus 121 Y~~~L~----d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~~ 174 (367)
|..+|. ...||.||-.-|+++...|+-+|-.|+..+ +.||-.++|.||++..+
T Consensus 100 w~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 100 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp HHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTS-TTCCHHHHHHHHHTTTC
T ss_pred HHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHC-CCCCHHHHHHHHHHHHh
Confidence 666663 457999999999999999999999999765 57999999999998654
No 31
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.58 E-value=0.01 Score=46.62 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCc----eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDL----RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
+..||.+|-.-|-+-+..||. ||-.|++..+. ||+||.+.||-..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 467999999999999999997 78888877665 9999999999754
No 32
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.52 E-value=0.011 Score=44.06 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~ 171 (367)
..||.||-..+.+....|+=+|-.|+ ++-+.||+.|+..+||.
T Consensus 13 ~~WT~eE~~~F~~~~~~~gk~w~~Ia-~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQHPKNFGLIA-SYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CSCCHHHHHHHHHHHHHSTTCHHHHH-HHCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHH-HHcCCCCHHHHHHHHHH
Confidence 46999999999999999999999999 55668999999999995
No 33
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.64 E-value=0.016 Score=45.08 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHhhhcC----ceeEEEecCCCCCCCHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYG 171 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fD----LRfiVI~DRy~~~RtvEDLK~RYY~ 171 (367)
...||.||-..|-.++..|+ =||-.|+.-. .||++|++.||=.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~ 54 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHH
Confidence 45799999999999999997 6899888775 5999999998744
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=93.32 E-value=0.033 Score=46.64 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
-..||.||.+.|..++..|+-+|-.|+..++ .||-.+..+||..+.
T Consensus 11 k~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGSDWKMIAATFP-NRNARQCRDRWKNYL 56 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTCHHHHHHTCT-TCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHhhhc
Confidence 4579999999999999999999999998764 699999999998653
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=92.73 E-value=0.049 Score=43.82 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=40.9
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 125 L~d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
|.-..||.||...|..++..|+- +|-.|+..+ +.||..+.++||..+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 49 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhc
Confidence 34467999999999999999997 799998765 589999999999874
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=91.38 E-value=0.064 Score=43.60 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 129 MWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
.||.||-+.|..++..|+- +|..|+...+ .||-.+..+||..+
T Consensus 3 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNY 46 (107)
T ss_dssp SSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHH
Confidence 6999999999999999996 8999987654 79999999999764
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=90.29 E-value=0.15 Score=44.02 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
...||.||-..|.+++..|+- +|-.|+..+ +.||-.+.++||+..
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 103 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 357999999999999999996 799998765 579999999999864
No 38
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=89.76 E-value=0.12 Score=43.23 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V 172 (367)
-..||.||...|.+++..|+- +|-.|+..+ +.||-.+.++||...
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNH 72 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHh
Confidence 357999999999999999996 699998765 479999999999863
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=89.27 E-value=0.2 Score=42.09 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fD-LRfiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
..||.||-+.|..++..|+ -.|-.|+... +.||-.+..+||..+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhcc
Confidence 3599999999999999999 5799998766 4799999999998753
No 40
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=89.27 E-value=0.078 Score=41.84 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHhhhcCc----eeEEEecCCCCCCCHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRY 169 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDL----RfiVI~DRy~~~RtvEDLK~RY 169 (367)
..||++|-.-|=.....|+- ||-.|+...+ .||+||.+.+|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY 65 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHY 65 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHH
Confidence 46999999999889999998 6666665554 59999999887
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=87.16 E-value=0.3 Score=40.03 Aligned_cols=49 Identities=20% Similarity=0.507 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHhhhcCc---eeEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 017704 129 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDL---RfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~ 178 (367)
-||+||-.-++.-|++=+- .|.+|+-.. .+||-+++++|||...+-+-.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L-~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQL-GNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-SSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHH
Confidence 4999999999999999654 555554221 379999999999998864433
No 42
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.65 E-value=0.65 Score=34.69 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=39.1
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHH
Q 017704 125 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 170 (367)
Q Consensus 125 L~d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY 170 (367)
+..+.||.||.....+-+..|+=.|.-|+--+-+.||+.|+..=||
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3457899999998889999999999988753556899999998888
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=82.01 E-value=0.31 Score=38.01 Aligned_cols=43 Identities=14% Similarity=0.503 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHhhhcCc---eeEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 129 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 129 ~WTkeETDyLFdLcr~fDL---RfiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
-||+||-.-++.-|++=+- .|..|+-.. +||-+++++||=...
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLM 61 (70)
Confidence 4999999999999999888 899998776 799999999996554
No 44
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=74.91 E-value=0.85 Score=42.87 Aligned_cols=44 Identities=20% Similarity=0.386 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHH
Q 017704 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~ 171 (367)
...||.||...+.+..+.|+=.|--|++- -..||+.+.|..||.
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~-VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDV-IGNKSVVQVKNFFVN 176 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHH-HSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHH-cCCCCHHHHHHHHHH
Confidence 45799999999999999999999999876 457999999999983
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=70.35 E-value=2.3 Score=32.42 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 170 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY 170 (367)
+.||.||.....+-...|+=.|.-|+--+-+.+|+.|+..=||
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4799999988888899999999999854677999999998888
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=63.28 E-value=3.4 Score=39.08 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHhhhcCce------eEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDLR------FIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDLR------fiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
..||.||-..|+++.++|+-+ |-.|+ .+-+.||--.+|+||..--
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYL 59 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 479999999999999999987 99999 5667899999999998843
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=61.79 E-value=4.8 Score=35.65 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHhhhcCc---eeEEEecCCC-CCCCHHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDL---RFIVIADRFP-SSRTVEELKDRYYGV 172 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDL---RfiVI~DRy~-~~RtvEDLK~RYY~V 172 (367)
.+||+.|+..|.--|.+|+. ||=-|..--. ..+|.+||++ ||.+
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~-y~~~ 55 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR-LGEL 55 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH-HHHH
Confidence 47999999999999999982 3432221001 3789999996 4444
No 48
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=60.40 E-value=2.2 Score=33.12 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCcee----------EEEecCC---CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 017704 127 DPMWTKEETDQLFELCERFDLRF----------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAP 182 (367)
Q Consensus 127 d~~WTkeETDyLFdLcr~fDLRf----------iVI~DRy---~~~RtvEDLK~RYY~V~~kl~~~R~~ 182 (367)
.+.||.+||.-|+++....+.+| -.|+++. +..||.+..++++=.+.+.+-..+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999877764 3333332 24799999999998888888777653
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=45.53 E-value=10 Score=30.34 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHHH
Q 017704 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (367)
Q Consensus 128 ~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDLK~RYY~ 171 (367)
+.||.||-....+-...|+=.|..|++ +-+.||+.|+-+=||.
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~-~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHH-TCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHH-HcCCCCHHHHHHHHhc
Confidence 579999999999999999999999975 4579999999999984
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=43.78 E-value=18 Score=34.98 Aligned_cols=59 Identities=29% Similarity=0.412 Sum_probs=42.8
Q ss_pred cccCCHHH---HHhhcCC--CCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 113 VVKYTDEE---YEKYLTD--PMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 113 ip~YtdeE---Y~~~L~d--~~WTkeETDyLFdLcr~fDL-RfiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
...+|+|| -+++|.. .+||+.+-.....-|..|+- .|--|+.=+ ...|+||+ .|||.|.
T Consensus 91 ~~~LTeeE~~eKe~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev-~~Kt~eEV-~~Y~~vF 155 (304)
T 1ofc_X 91 AEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDV-EGKTPEEV-IEYNAVF 155 (304)
T ss_dssp CCCCCHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS-TTCCHHHH-HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHh-cCCCHHHH-HHHHHHH
Confidence 34588887 5667765 48999999999999999984 222222222 36999999 7888774
No 51
>4d9a_A 2-pyrone-4,6-dicarbaxylate hydrolase; structural genomics, protein structure initiative; HET: 0GY; 1.35A {Sphingomonas paucimobilis} PDB: 4d95_A* 4di8_A* 4di9_A* 4d9d_A 4dia_A 2qah_A 4d8l_A
Probab=26.26 E-value=83 Score=29.08 Aligned_cols=63 Identities=10% Similarity=-0.000 Sum_probs=44.6
Q ss_pred CCccccccCCCccccCCHHHHHhhcC----------CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHH
Q 017704 101 DYSFAKYNKSVDVVKYTDEEYEKYLT----------DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEEL 165 (367)
Q Consensus 101 dY~FAKfN~kv~ip~YtdeEY~~~L~----------d~~WTkeETDyLFdLcr~fDLRfiVI~DRy~~~RtvEDL 165 (367)
.||+.. +....-..||-|+|...|. ...|...++++|.+.|+++.=||.-|. -.+...+.++|
T Consensus 40 ~~p~~~-~~~~~~~~~~~e~l~~~m~~~GI~~~Vlvq~~~~~~dN~~ll~~l~~~~~r~~Gva-~vdp~~~~~eL 112 (303)
T 4d9a_A 40 QFPFSP-KAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHGTDNAATLDAIARAQGKARGIA-VVDPAIDEAEL 112 (303)
T ss_dssp TSCCCT-TCSCCBCCBCHHHHHHHHHHHTCSEEEEECCGGGTTCCHHHHHHHHHTTTSEEEEE-CCCTTCCHHHH
T ss_pred cCCCCC-CCCCcCCCCCHHHHHHHHHHcCCCeEEEeccccccccHHHHHHHHHhCCCcEEEEE-EeCCCCCHHHH
Confidence 477654 2222235899999988774 356888899999998889988887776 33444566666
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=26.02 E-value=32 Score=34.24 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=42.3
Q ss_pred cccCCHHH---HHhhcCC--CCCCHHHHHHHHHHhhhcCce-eEEEecCCCCCCCHHHHHHHHHHHH
Q 017704 113 VVKYTDEE---YEKYLTD--PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYYGVS 173 (367)
Q Consensus 113 ip~YtdeE---Y~~~L~d--~~WTkeETDyLFdLcr~fDLR-fiVI~DRy~~~RtvEDLK~RYY~V~ 173 (367)
...+|+|| -+++|.. .+||+-+-..++..|.+|+-- +--|+.=+++..|+||.+ +|+.|.
T Consensus 104 ~~~LTeEE~~EKe~LL~eGF~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vF 169 (374)
T 2y9y_A 104 SQPLTEEEEKMKADWESEGFTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAF 169 (374)
T ss_dssp CSSSCHHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHH
Confidence 34588887 4566654 489999999999999999832 112222222379999998 888774
No 53
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=24.37 E-value=25 Score=33.19 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc-----------CceeEEEecC
Q 017704 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 155 (367)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~f-----------DLRfiVI~DR 155 (367)
.++++.||-|-|. =+.+|.+.||+|+++| +.|.-||-|+
T Consensus 64 ~lTlYaFStENwk-------Rp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 113 (253)
T 3sgv_B 64 ALTLYAFSSENWN-------RPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDT 113 (253)
T ss_dssp EEEEECC------------------CHHHHHHHHTTHHHHHHHHHHTTCEEEEESCG
T ss_pred EEEEEEEchhccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCeEEEEEeeh
Confidence 4667788877764 3568999999998755 7788888776
No 54
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=23.98 E-value=1.1e+02 Score=24.00 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.7
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 017704 147 LRFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (367)
Q Consensus 147 LRfiVI~DRy~~~RtvEDLK~RYY~V~~kl~~ 178 (367)
|+.++++||-..+-.++.||.=-+.|..+++.
T Consensus 23 LqliLa~dR~~~p~~l~~lk~eil~VIskYv~ 54 (80)
T 3ku7_A 23 LKLILAKERTLNLPYMEEMRKEIIAVIQKYTK 54 (80)
T ss_dssp EEEEEEEESSCCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999954577999999999999999996
No 55
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=21.20 E-value=86 Score=25.29 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=29.6
Q ss_pred ceeEEEecCCC---CCCCHHHHHHHHHHHHHHHHHh
Q 017704 147 LRFIVIADRFP---SSRTVEELKDRYYGVSRAILIA 179 (367)
Q Consensus 147 LRfiVI~DRy~---~~RtvEDLK~RYY~V~~kl~~~ 179 (367)
|+.++++||-+ ++-.+|.||+--..|.++++..
T Consensus 22 LqlILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~I 57 (95)
T 2kxo_A 22 LQIIIAQERAQEGQTPDYLPTLRKALMEVLSKYVNV 57 (95)
T ss_dssp EEEEEEEEECSSCCCCCSHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHheec
Confidence 78999999973 4779999999999999999986
No 56
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=20.47 E-value=26 Score=32.55 Aligned_cols=39 Identities=28% Similarity=0.603 Sum_probs=29.1
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhh-----------cCceeEEEecC
Q 017704 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER-----------FDLRFIVIADR 155 (367)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLcr~-----------fDLRfiVI~DR 155 (367)
.++++.||-|-|.+ +.+|.+.||+|+++ .+.|.-||-|+
T Consensus 53 ~lTlYaFStENw~R-------p~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 102 (225)
T 3ugs_B 53 NLSLFAFSTENWKR-------PKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDL 102 (225)
T ss_dssp EEEEEEEESGGGGS-------CHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEEESCG
T ss_pred EEEEEEEcccccCC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 35666777666642 67999999999875 47788888776
Done!