Query 017706
Match_columns 367
No_of_seqs 361 out of 504
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:39:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 99.8 1.2E-21 4.2E-26 212.7 5.0 123 38-167 559-705 (854)
2 2crn_A Ubash3A protein; compac 99.7 4.5E-18 1.5E-22 129.9 6.2 57 112-168 7-63 (64)
3 1vek_A UBP14, ubiquitin-specif 99.7 1.7E-16 5.9E-21 127.3 7.9 59 110-168 25-83 (84)
4 2dag_A Ubiquitin carboxyl-term 99.7 1.8E-16 6.3E-21 124.3 7.7 59 110-168 5-63 (74)
5 1whc_A RSGI RUH-027, UBA/UBX 3 99.6 7.2E-16 2.5E-20 117.6 6.1 54 111-164 6-59 (64)
6 2dak_A Ubiquitin carboxyl-term 99.6 1E-15 3.5E-20 116.3 6.3 57 110-167 5-61 (63)
7 2dai_A Ubadc1, ubiquitin assoc 99.6 1.6E-15 5.4E-20 121.4 7.4 56 111-167 26-81 (83)
8 2lbc_A Ubiquitin carboxyl-term 99.5 5.2E-14 1.8E-18 120.1 8.8 55 112-166 1-55 (126)
9 2cpw_A CBL-interacting protein 99.5 3.9E-14 1.3E-18 108.0 4.4 46 113-158 18-63 (64)
10 1wgn_A UBAP1, ubiquitin associ 99.4 1.7E-13 5.9E-18 102.9 4.8 42 114-156 19-60 (63)
11 1wji_A Tudor domain containing 99.4 1.3E-12 4.6E-17 99.3 7.9 55 112-167 7-61 (63)
12 2d5u_A N-glycanase 1; pngase, 99.4 1.5E-13 5E-18 117.7 2.7 60 301-363 16-75 (124)
13 2ccq_A P97, peptide N-glycanas 99.4 2E-13 6.8E-18 112.6 3.3 56 305-363 5-60 (99)
14 1wiv_A UBP14, ubiquitin-specif 99.3 4.9E-12 1.7E-16 98.8 6.2 48 110-158 25-72 (73)
15 2ekk_A UBA domain from E3 ubiq 99.3 3.2E-12 1.1E-16 91.4 4.7 43 110-154 5-47 (47)
16 2dkl_A Trinucleotide repeat co 99.2 1.6E-11 5.5E-16 98.6 7.7 52 111-163 18-69 (85)
17 1dv0_A DNA repair protein HHR2 99.2 2.2E-12 7.5E-17 92.7 2.1 45 113-158 3-47 (47)
18 2g3q_A Protein YBL047C; endocy 99.2 1E-11 3.4E-16 87.1 4.7 41 113-154 3-43 (43)
19 2cos_A Serine/threonine protei 99.2 1.6E-11 5.6E-16 89.8 5.0 42 111-152 6-47 (54)
20 4ae4_A Ubiquitin-associated pr 99.2 7.2E-12 2.4E-16 106.3 3.3 50 112-162 6-57 (118)
21 1veg_A NEDD8 ultimate buster-1 99.2 6.9E-11 2.4E-15 94.4 7.8 47 110-157 25-71 (83)
22 2lbc_A Ubiquitin carboxyl-term 99.1 8.3E-11 2.8E-15 100.2 6.0 48 112-160 76-124 (126)
23 1ify_A HHR23A, UV excision rep 99.1 1.2E-10 4E-15 84.2 4.8 41 112-153 6-46 (49)
24 2jy5_A Ubiquilin-1; UBA, alter 99.0 4.6E-10 1.6E-14 82.1 5.1 40 114-154 12-52 (52)
25 1vg5_A RSGI RUH-014, rhomboid 98.9 9.8E-10 3.4E-14 85.8 6.3 46 110-156 25-70 (73)
26 2knz_A Ubiquilin-4; cytoplasm, 98.9 9.1E-10 3.1E-14 80.8 5.7 39 115-154 12-51 (53)
27 1z96_A DNA-damage, UBA-domain 98.8 3.3E-09 1.1E-13 72.6 5.0 36 115-151 5-40 (40)
28 2dah_A Ubiquilin-3; UBA domain 98.7 1.1E-08 3.9E-13 75.3 5.7 41 115-156 10-51 (54)
29 2bwb_A Ubiquitin-like protein 98.7 1.1E-08 3.6E-13 73.1 5.4 38 115-153 8-46 (46)
30 2dna_A Unnamed protein product 98.7 1E-08 3.5E-13 78.7 4.8 42 115-157 20-62 (67)
31 1vej_A Riken cDNA 4931431F19; 98.7 1.6E-08 5.6E-13 79.1 5.5 43 114-157 29-72 (74)
32 1wr1_B Ubiquitin-like protein 98.7 2.3E-08 8E-13 74.7 5.4 39 115-154 18-57 (58)
33 4ae4_A Ubiquitin-associated pr 98.5 7.8E-08 2.7E-12 81.5 5.2 43 111-154 73-115 (118)
34 1oqy_A HHR23A, UV excision rep 98.4 9.4E-08 3.2E-12 95.1 2.5 45 112-157 166-210 (368)
35 2ooa_A E3 ubiquitin-protein li 98.3 1.1E-06 3.7E-11 63.9 6.0 42 111-153 8-49 (52)
36 2cwb_A Chimera of immunoglobul 98.2 1.6E-06 5.5E-11 72.3 5.9 41 114-155 66-107 (108)
37 2d9s_A CBL E3 ubiquitin protei 98.2 3.1E-06 1.1E-10 61.8 5.9 44 111-155 6-49 (53)
38 2juj_A E3 ubiquitin-protein li 98.2 1.9E-06 6.3E-11 63.2 4.6 45 111-156 4-48 (56)
39 1oqy_A HHR23A, UV excision rep 98.1 9.7E-07 3.3E-11 87.8 2.5 46 111-157 322-367 (368)
40 2oo9_A E3 ubiquitin-protein li 98.0 1.6E-05 5.5E-10 56.3 6.0 39 115-154 5-43 (46)
41 3i3t_A Ubiquitin carboxyl-term 97.8 3.9E-06 1.3E-10 79.8 0.1 52 43-101 227-284 (355)
42 2ayn_A Ubiquitin carboxyl-term 97.7 3.6E-06 1.2E-10 82.2 -1.5 54 41-101 208-268 (404)
43 2cp8_A NEXT to BRCA1 gene 1 pr 97.6 5.9E-05 2E-09 55.5 4.9 44 112-156 7-51 (54)
44 1wiv_A UBP14, ubiquitin-specif 97.6 3.6E-06 1.2E-10 65.4 -1.9 38 144-190 2-39 (73)
45 3ihp_A Ubiquitin carboxyl-term 97.6 3.1E-05 1.1E-09 84.3 4.6 47 111-158 717-763 (854)
46 3k9o_A Ubiquitin-conjugating e 97.5 8.6E-05 3E-09 67.6 5.6 38 115-153 164-201 (201)
47 3mhs_A Ubiquitin carboxyl-term 97.5 7.6E-06 2.6E-10 82.2 -1.8 52 43-101 339-396 (476)
48 2qsf_X RAD23, UV excision repa 97.5 7.4E-05 2.5E-09 66.9 4.3 43 113-156 129-171 (171)
49 3nhe_A Ubiquitin carboxyl-term 97.4 1.8E-05 6E-10 75.0 -1.4 52 43-101 217-274 (348)
50 1wj7_A Hypothetical protein (R 97.2 0.00042 1.4E-08 57.3 5.5 41 115-156 40-81 (104)
51 1vjv_A Ubiquitin carboxyl-term 97.2 6.1E-05 2.1E-09 74.2 0.4 54 41-101 200-260 (415)
52 2y6e_A Ubiquitin carboxyl-term 97.2 4.4E-05 1.5E-09 73.8 -0.9 53 42-101 231-289 (367)
53 1nb8_A Ubiquitin carboxyl-term 97.1 7E-05 2.4E-09 72.6 -0.1 51 43-101 172-229 (353)
54 2gfo_A Ubiquitin carboxyl-term 96.9 0.00012 4.1E-09 72.2 -0.6 52 43-101 269-326 (396)
55 2f1z_A Ubiquitin carboxyl-term 96.2 0.001 3.6E-08 67.8 1.0 51 43-101 341-398 (522)
56 3e46_A Ubiquitin-conjugating e 95.6 0.014 4.8E-07 55.1 5.8 38 115-153 216-253 (253)
57 1wgl_A TOLL-interacting protei 94.1 0.078 2.7E-06 39.3 5.2 46 110-157 5-53 (59)
58 2cp9_A EF-TS, EF-TSMT, elongat 93.8 0.087 3E-06 39.8 4.9 43 111-154 6-49 (64)
59 1q02_A Sequestosome 1; helical 89.9 0.22 7.4E-06 36.1 2.9 34 116-150 12-47 (52)
60 2drp_A Protein (tramtrack DNA- 89.3 0.13 4.4E-06 36.4 1.4 42 4-52 9-50 (66)
61 6rxn_A Rubredoxin; electron tr 88.9 0.17 5.7E-06 35.8 1.7 36 5-51 4-39 (46)
62 2dhy_A CUE domain-containing p 88.9 0.37 1.3E-05 36.6 3.7 42 113-156 17-61 (67)
63 2dmi_A Teashirt homolog 3; zin 88.7 0.72 2.5E-05 36.0 5.6 43 4-52 18-60 (115)
64 1bbo_A Human enhancer-binding 86.9 0.2 7E-06 34.1 1.2 40 6-54 2-41 (57)
65 1yk4_A Rubredoxin, RD; electro 86.8 0.14 4.7E-06 37.1 0.2 43 5-51 2-44 (52)
66 2ct1_A Transcriptional repress 86.4 0.41 1.4E-05 34.9 2.6 42 4-52 14-55 (77)
67 2yt9_A Zinc finger-containing 85.8 0.58 2E-05 35.1 3.3 22 5-26 7-28 (95)
68 2eps_A POZ-, at HOOK-, and zin 85.6 1.4 4.8E-05 30.0 5.0 41 4-52 11-51 (54)
69 1e8j_A Rubredoxin; iron-sulfur 85.3 0.18 6.3E-06 36.4 0.2 43 5-51 3-45 (52)
70 4gzn_C ZFP-57, zinc finger pro 84.7 0.34 1.2E-05 35.2 1.4 40 6-54 5-44 (60)
71 2kn9_A Rubredoxin; metalloprot 84.6 0.18 6.3E-06 39.7 -0.0 43 5-51 27-69 (81)
72 1x5w_A Zinc finger protein 64, 84.3 0.53 1.8E-05 33.6 2.4 41 3-52 7-47 (70)
73 2v3b_B Rubredoxin 2, rubredoxi 84.3 0.17 5.9E-06 36.9 -0.3 43 5-51 3-45 (55)
74 2adr_A ADR1; transcription reg 84.3 0.62 2.1E-05 32.0 2.6 40 6-54 3-42 (60)
75 2ctd_A Zinc finger protein 512 84.0 0.61 2.1E-05 36.4 2.8 47 5-61 34-81 (96)
76 3uk3_C Zinc finger protein 217 83.3 0.25 8.6E-06 33.6 0.2 39 5-52 4-42 (57)
77 1x6e_A Zinc finger protein 24; 83.2 0.5 1.7E-05 34.1 1.8 40 4-52 13-52 (72)
78 1s24_A Rubredoxin 2; electron 83.0 0.19 6.4E-06 40.2 -0.6 43 5-51 35-77 (87)
79 4rxn_A Rubredoxin; electron tr 81.9 0.31 1.1E-05 35.6 0.3 43 5-51 3-45 (54)
80 2lce_A B-cell lymphoma 6 prote 81.9 0.43 1.5E-05 34.5 1.1 43 4-55 16-58 (74)
81 1otr_A Protein CUE2; protein-p 81.7 2.7 9.3E-05 29.9 5.2 41 115-156 5-47 (49)
82 1dx8_A Rubredoxin; electron tr 81.7 0.24 8.1E-06 38.0 -0.5 43 5-51 7-49 (70)
83 2pwq_A Ubiquitin conjugating e 80.4 0.34 1.2E-05 44.5 0.0 37 115-152 178-214 (216)
84 2d9h_A Zinc finger protein 692 80.4 0.51 1.7E-05 34.4 1.0 44 3-52 5-48 (78)
85 2gqj_A Zinc finger protein KIA 80.3 0.32 1.1E-05 37.7 -0.2 42 4-53 23-65 (98)
86 2cot_A Zinc finger protein 435 80.2 0.75 2.6E-05 33.4 1.9 43 4-55 17-59 (77)
87 1x6h_A Transcriptional repress 79.8 1.1 3.6E-05 32.8 2.6 43 4-52 14-57 (86)
88 2ghf_A ZHX1, zinc fingers and 79.7 0.87 3E-05 36.5 2.2 48 4-56 17-64 (102)
89 2lv2_A Insulinoma-associated p 78.8 0.88 3E-05 35.3 2.0 40 6-54 29-68 (85)
90 1xb2_B EF-TS, elongation facto 78.3 1.8 6E-05 41.6 4.3 39 113-152 3-42 (291)
91 2wbt_A B-129; zinc finger; 2.7 77.8 1 3.4E-05 36.0 2.1 40 5-55 74-113 (129)
92 3a43_A HYPD, hydrogenase nicke 77.7 1.5 5.3E-05 37.3 3.3 39 4-51 69-116 (139)
93 2epr_A POZ-, at HOOK-, and zin 76.1 3.2 0.00011 27.2 4.0 38 4-50 11-48 (48)
94 2eod_A TNF receptor-associated 76.1 1.3 4.3E-05 31.4 2.0 37 5-52 10-47 (66)
95 2ida_A Hypothetical protein; z 75.8 0.86 2.9E-05 37.3 1.1 41 7-50 36-83 (102)
96 2epq_A POZ-, at HOOK-, and zin 74.1 2.8 9.7E-05 26.9 3.2 37 4-49 9-45 (45)
97 1tr8_A Conserved protein (MTH1 74.1 3.7 0.00013 33.5 4.5 39 111-150 62-101 (102)
98 2kmk_A Zinc finger protein GFI 73.7 0.8 2.7E-05 33.1 0.4 20 7-26 3-22 (82)
99 2rpc_A Zinc finger protein ZIC 73.7 1.8 6.2E-05 35.4 2.7 58 3-61 23-81 (155)
100 2ee8_A Protein ODD-skipped-rel 73.0 2 7E-05 32.7 2.7 22 5-26 17-38 (106)
101 2dmd_A Zinc finger protein 64, 72.8 1.7 5.9E-05 32.4 2.1 22 5-26 8-29 (96)
102 1ixs_A Holliday junction DNA h 72.6 6.8 0.00023 28.9 5.3 26 113-138 16-41 (62)
103 1llm_C Chimera of ZIF23-GCN4; 72.5 0.87 3E-05 34.0 0.4 47 6-61 4-50 (88)
104 2kna_A Baculoviral IAP repeat- 72.3 6.5 0.00022 31.9 5.6 66 116-188 29-100 (104)
105 1aip_C EF-TS, elongation facto 72.1 3.1 0.00011 37.8 4.0 37 116-153 5-42 (196)
106 2yt9_A Zinc finger-containing 71.9 1.4 4.9E-05 32.8 1.5 47 4-57 34-80 (95)
107 2ej4_A Zinc finger protein ZIC 71.7 2 6.9E-05 32.0 2.3 50 5-55 25-75 (95)
108 1a1h_A QGSR zinc finger peptid 71.6 1.4 4.9E-05 32.4 1.4 10 43-52 63-72 (90)
109 2dlq_A GLI-kruppel family memb 71.3 1.6 5.5E-05 34.0 1.7 48 5-61 7-54 (124)
110 1tte_A Ubiquitin-conjugating e 71.0 2.8 9.4E-05 38.3 3.5 29 112-140 167-195 (215)
111 1wjp_A Zinc finger protein 295 71.0 2.2 7.6E-05 32.8 2.5 46 5-61 16-61 (107)
112 2dmd_A Zinc finger protein 64, 71.0 1.5 5.1E-05 32.8 1.4 46 5-59 36-81 (96)
113 2csh_A Zinc finger protein 297 70.4 1.3 4.4E-05 34.2 1.0 21 5-26 10-30 (110)
114 2ee8_A Protein ODD-skipped-rel 68.5 3.1 0.00011 31.6 2.8 49 4-61 44-92 (106)
115 3rk3_E Complexin-1; snare prot 68.2 14 0.00049 27.3 6.0 35 223-257 11-46 (63)
116 1wjp_A Zinc finger protein 295 67.1 1.9 6.4E-05 33.3 1.2 46 6-61 43-88 (107)
117 1vd4_A Transcription initiatio 65.5 5.3 0.00018 28.0 3.3 37 4-52 13-49 (62)
118 2csh_A Zinc finger protein 297 64.8 2.9 0.0001 32.1 2.0 41 4-53 36-76 (110)
119 1ubd_C Protein (YY1 zinc finge 63.8 3.5 0.00012 32.2 2.3 47 2-58 2-50 (124)
120 2kdx_A HYPA, hydrogenase/ureas 63.3 3.2 0.00011 34.1 2.0 27 4-51 72-99 (119)
121 2dlq_A GLI-kruppel family memb 62.8 3.9 0.00013 31.6 2.4 51 5-61 35-85 (124)
122 2kmk_A Zinc finger protein GFI 62.1 2.5 8.6E-05 30.3 1.1 41 5-54 29-69 (82)
123 3c5k_A HD6, histone deacetylas 61.8 2.6 8.9E-05 34.6 1.2 42 7-50 38-82 (109)
124 2lt7_A Transcriptional regulat 60.0 2 6.7E-05 35.6 0.1 38 6-52 23-60 (133)
125 1zu1_A DSRBP-ZFA, RNA binding 58.3 2 7E-05 35.8 -0.0 63 5-67 32-118 (127)
126 2dlk_A Novel protein; ZF-C2H2 54.7 11 0.00038 26.8 3.5 50 6-63 8-61 (79)
127 1f2i_G Fusion of N-terminal 17 53.9 5.7 0.00019 28.1 1.8 41 4-53 18-60 (73)
128 2jp9_A Wilms tumor 1; DNA bind 53.6 4.2 0.00015 31.3 1.1 21 6-26 37-59 (119)
129 2lt7_A Transcriptional regulat 53.5 3.5 0.00012 34.0 0.7 42 5-55 50-91 (133)
130 2ema_A Zinc finger protein 347 53.4 16 0.00055 23.1 3.9 36 4-48 11-46 (46)
131 2el6_A Zinc finger protein 268 52.9 15 0.0005 23.4 3.6 36 4-48 11-46 (46)
132 2lvu_A Zinc finger and BTB dom 57.4 3 0.0001 23.2 0.0 10 43-52 3-12 (26)
133 2eop_A Zinc finger protein 268 51.4 16 0.00054 23.1 3.6 36 4-48 11-46 (46)
134 1twf_L ABC10-alpha, DNA-direct 51.3 11 0.00036 28.7 2.9 12 4-15 27-38 (70)
135 2el4_A Zinc finger protein 268 51.2 19 0.00065 22.7 3.9 36 4-48 11-46 (46)
136 3mhs_A Ubiquitin carboxyl-term 50.4 5.4 0.00018 39.4 1.5 43 6-50 63-106 (476)
137 2i13_A AART; DNA binding, zinc 50.3 5.4 0.00019 33.7 1.4 21 6-26 106-126 (190)
138 2emy_A Zinc finger protein 268 50.2 18 0.00061 22.9 3.7 36 4-48 11-46 (46)
139 1kil_E Complexin I snare-compl 50.2 19 0.00067 25.4 3.9 32 226-257 11-43 (49)
140 2em0_A Zinc finger protein 224 50.1 18 0.00062 22.9 3.7 35 5-48 12-46 (46)
141 2ep2_A Zinc finger protein 484 50.0 21 0.00073 22.5 4.1 36 4-48 11-46 (46)
142 2epw_A Zinc finger protein 268 50.0 18 0.0006 22.9 3.6 36 4-48 11-46 (46)
143 2eml_A Zinc finger protein 28 49.8 22 0.00075 22.5 4.1 36 4-48 11-46 (46)
144 2j7j_A Transcription factor II 49.5 4.7 0.00016 28.9 0.7 20 7-26 3-24 (85)
145 2ep0_A Zinc finger protein 28 49.4 21 0.00072 22.6 3.9 36 4-48 11-46 (46)
146 2lvt_A Zinc finger and BTB dom 54.6 3.6 0.00012 23.4 0.0 12 43-54 3-14 (29)
147 2m0e_A Zinc finger and BTB dom 48.6 4.9 0.00017 22.3 0.6 10 43-52 3-12 (29)
148 2ebt_A Krueppel-like factor 5; 48.6 11 0.00037 28.0 2.7 21 6-26 16-38 (100)
149 2eoe_A Zinc finger protein 347 48.4 19 0.00066 22.7 3.6 36 4-48 11-46 (46)
150 2lvr_A Zinc finger and BTB dom 53.9 3.8 0.00013 23.2 0.0 13 42-54 3-15 (30)
151 2emf_A Zinc finger protein 484 48.1 23 0.00079 22.4 4.0 36 4-48 11-46 (46)
152 2en8_A Zinc finger protein 224 48.1 22 0.00074 22.4 3.8 36 4-48 11-46 (46)
153 2ytk_A Zinc finger protein 347 48.0 20 0.00069 22.6 3.7 36 4-48 11-46 (46)
154 2em5_A ZFP-95, zinc finger pro 47.3 24 0.00081 22.4 4.0 36 4-48 11-46 (46)
155 2em7_A Zinc finger protein 224 47.0 23 0.00078 22.4 3.8 36 4-48 11-46 (46)
156 2eme_A Zinc finger protein 473 47.0 26 0.00089 22.0 4.1 36 4-48 11-46 (46)
157 2emk_A Zinc finger protein 28 46.5 19 0.00066 22.8 3.4 35 5-48 12-46 (46)
158 2eq0_A Zinc finger protein 347 46.5 24 0.00081 22.3 3.8 36 4-48 11-46 (46)
159 2em9_A Zinc finger protein 224 46.5 25 0.00085 22.1 3.9 36 4-48 11-46 (46)
160 2ve7_A Kinetochore protein HEC 46.5 1.4E+02 0.0047 28.4 10.7 41 112-152 68-112 (315)
161 2uzg_A Ubiquitin carboxyl-term 46.3 7.1 0.00024 31.2 1.3 43 6-50 39-86 (97)
162 2emm_A ZFP-95, zinc finger pro 46.1 22 0.00074 22.4 3.6 36 4-48 11-46 (46)
163 2ene_A Zinc finger protein 347 45.9 25 0.00087 22.1 3.9 36 4-48 11-46 (46)
164 2ytn_A Zinc finger protein 347 45.7 22 0.00075 22.5 3.6 35 5-48 12-46 (46)
165 2en1_A Zinc finger protein 224 45.3 23 0.0008 22.3 3.7 36 4-48 11-46 (46)
166 2ytj_A Zinc finger protein 484 45.3 25 0.00086 22.2 3.8 36 4-48 11-46 (46)
167 2eov_A Zinc finger protein 484 45.2 21 0.00072 22.5 3.4 35 5-48 12-46 (46)
168 2g45_A Ubiquitin carboxyl-term 45.1 7.1 0.00024 33.0 1.2 44 7-50 48-103 (129)
169 2ytq_A Zinc finger protein 268 44.7 24 0.00082 22.3 3.6 35 5-48 12-46 (46)
170 2kvf_A Zinc finger and BTB dom 44.5 16 0.00054 20.2 2.4 21 6-26 4-24 (28)
171 2emx_A Zinc finger protein 268 44.5 25 0.00085 21.9 3.7 36 4-48 9-44 (44)
172 2ytd_A Zinc finger protein 473 44.5 24 0.00082 22.3 3.6 36 4-48 11-46 (46)
173 2en6_A Zinc finger protein 268 44.4 22 0.00077 22.4 3.5 36 4-48 11-46 (46)
174 2ysp_A Zinc finger protein 224 44.1 25 0.00084 22.2 3.6 36 4-48 11-46 (46)
175 2enc_A Zinc finger protein 224 44.0 28 0.00096 21.9 3.9 36 4-48 11-46 (46)
176 2elz_A Zinc finger protein 224 43.4 26 0.00088 22.2 3.6 35 5-48 12-46 (46)
177 2eoq_A Zinc finger protein 224 43.3 24 0.00082 22.3 3.5 35 5-48 12-46 (46)
178 2em8_A Zinc finger protein 224 43.1 21 0.00072 22.6 3.2 36 4-48 11-46 (46)
179 2epx_A Zinc finger protein 28 43.0 28 0.00095 21.9 3.7 36 5-48 12-47 (47)
180 2wbs_A Krueppel-like factor 4; 42.9 12 0.00042 27.0 2.1 21 6-26 6-28 (89)
181 2eq4_A Zinc finger protein 224 42.9 25 0.00086 22.1 3.5 36 4-48 11-46 (46)
182 1znf_A 31ST zinc finger from X 42.9 18 0.00062 19.7 2.5 21 6-26 2-22 (27)
183 2qho_B E3 ubiquitin-protein li 42.7 66 0.0023 22.9 5.7 45 111-156 6-52 (53)
184 2epz_A Zinc finger protein 28 42.6 26 0.0009 22.1 3.6 35 5-48 12-46 (46)
185 2yso_A ZFP-95, zinc finger pro 41.9 27 0.00092 22.0 3.5 36 4-48 11-46 (46)
186 4dbg_B Ring finger protein 31; 41.8 15 0.00053 32.2 2.9 35 116-151 104-139 (162)
187 2emh_A Zinc finger protein 484 41.5 22 0.00075 22.5 3.0 36 4-48 11-46 (46)
188 2jp9_A Wilms tumor 1; DNA bind 41.2 6.5 0.00022 30.2 0.4 22 5-26 6-29 (119)
189 2kvh_A Zinc finger and BTB dom 41.2 18 0.00061 19.9 2.3 22 5-26 3-24 (27)
190 1p3q_Q VPS9P, vacuolar protein 41.1 8 0.00027 28.1 0.8 36 115-152 13-51 (54)
191 2ctu_A Zinc finger protein 483 40.5 2.9 9.9E-05 29.3 -1.7 42 4-61 17-58 (73)
192 2emp_A Zinc finger protein 347 40.4 24 0.00083 22.2 3.1 36 4-48 11-46 (46)
193 2km4_A Regulator of TY1 transp 40.3 18 0.0006 30.5 3.0 34 124-157 1-36 (142)
194 2ytr_A Zinc finger protein 347 40.2 24 0.00084 22.1 3.1 35 5-48 12-46 (46)
195 2i13_A AART; DNA binding, zinc 40.2 8.3 0.00028 32.6 0.9 22 5-26 77-98 (190)
196 1a1h_A QGSR zinc finger peptid 39.5 7.3 0.00025 28.3 0.4 45 5-58 4-50 (90)
197 1ard_A Yeast transcription fac 39.4 18 0.00062 19.9 2.1 21 6-26 3-23 (29)
198 1rik_A E6APC1 peptide; E6-bind 39.3 20 0.0007 19.7 2.4 21 6-26 3-23 (29)
199 2eoo_A ZFP-95, zinc finger pro 39.1 26 0.0009 22.1 3.1 36 4-48 11-46 (46)
200 2ely_A Zinc finger protein 224 38.7 25 0.00087 22.2 3.0 35 5-48 12-46 (46)
201 2kvg_A Zinc finger and BTB dom 38.4 21 0.0007 19.8 2.2 21 6-26 4-24 (27)
202 2ytm_A Zinc finger protein 28 37.5 22 0.00076 22.6 2.6 35 5-48 12-46 (46)
203 4efa_E V-type proton ATPase su 37.5 2.2E+02 0.0076 25.3 14.3 21 176-196 6-26 (233)
204 2ytg_A ZFP-95, zinc finger pro 37.4 23 0.00078 22.4 2.6 36 4-48 11-46 (46)
205 1pft_A TFIIB, PFTFIIBN; N-term 37.3 9 0.00031 26.5 0.6 32 1-50 1-32 (50)
206 2yu8_A Zinc finger protein 347 37.2 23 0.00079 22.3 2.6 36 4-48 11-46 (46)
207 2kfq_A FP1; protein, de novo p 36.7 5.5 0.00019 23.6 -0.6 10 43-52 3-12 (32)
208 2ep3_A Zinc finger protein 484 36.6 41 0.0014 21.1 3.8 36 4-48 11-46 (46)
209 2m0d_A Zinc finger and BTB dom 36.4 29 0.00098 19.0 2.7 21 6-26 4-24 (30)
210 1rim_A E6APC2 peptide; E6-bind 35.2 21 0.00072 21.1 2.0 21 6-26 3-23 (33)
211 2k2d_A Ring finger and CHY zin 34.1 20 0.00069 27.7 2.2 29 4-51 36-64 (79)
212 2ytb_A Zinc finger protein 32; 34.0 12 0.00041 23.1 0.7 15 42-56 11-25 (42)
213 1srk_A Zinc finger protein ZFP 33.7 41 0.0014 19.5 3.2 22 5-26 7-28 (35)
214 2em2_A Zinc finger protein 28 33.2 46 0.0016 20.9 3.6 36 4-48 11-46 (46)
215 2dlk_A Novel protein; ZF-C2H2 32.8 19 0.00064 25.5 1.7 40 4-52 37-78 (79)
216 1njq_A Superman protein; zinc- 32.6 40 0.0014 20.3 3.1 22 5-26 6-27 (39)
217 2di0_A Activating signal coint 32.5 1.1E+02 0.0039 23.2 6.1 37 116-153 15-53 (71)
218 1paa_A Yeast transcription fac 32.4 29 0.00098 19.2 2.2 20 6-25 3-22 (30)
219 2ztd_A Holliday junction ATP-d 32.1 59 0.002 29.5 5.3 24 115-138 165-188 (212)
220 2j7j_A Transcription factor II 32.0 11 0.00038 26.8 0.4 37 4-52 30-71 (85)
221 1klr_A Zinc finger Y-chromosom 30.8 26 0.00089 19.2 1.8 21 6-26 3-23 (30)
222 1cuk_A RUVA protein; DNA repai 30.6 68 0.0023 28.7 5.4 32 114-145 160-193 (203)
223 2gmg_A Hypothetical protein PF 30.5 29 0.001 28.4 2.6 8 43-50 85-92 (105)
224 2elx_A Zinc finger protein 406 30.3 45 0.0015 19.2 3.0 22 5-26 7-28 (35)
225 2m0f_A Zinc finger and BTB dom 30.3 33 0.0011 18.6 2.2 21 6-26 3-23 (29)
226 1p7a_A BF3, BKLF, kruppel-like 30.3 43 0.0015 19.7 2.9 12 43-54 12-23 (37)
227 1v92_A NSFL1 cofactor P47; 3-h 30.2 66 0.0023 21.3 4.1 38 116-154 7-45 (46)
228 2adr_A ADR1; transcription reg 29.7 48 0.0016 21.9 3.4 27 4-31 29-55 (60)
229 2gli_A Protein (five-finger GL 29.3 31 0.0011 27.6 2.7 55 4-64 2-61 (155)
230 2xzm_5 Ribosomal protein S26E 29.0 21 0.00071 29.9 1.5 46 4-49 19-80 (119)
231 2elq_A Zinc finger protein 406 28.8 49 0.0017 19.4 3.0 22 5-26 9-30 (36)
232 2dal_A Protein KIAA0794; FAS a 28.6 1.6E+02 0.0053 21.2 6.2 41 115-156 16-57 (62)
233 2ejs_A Autocrine motility fact 28.6 74 0.0025 23.3 4.3 38 115-154 14-53 (58)
234 2elr_A Zinc finger protein 406 28.4 40 0.0014 19.7 2.5 21 6-26 10-30 (36)
235 2i50_A Ubiquitin carboxyl-term 28.1 18 0.00063 30.2 1.1 43 6-50 55-104 (126)
236 2elv_A Zinc finger protein 406 28.0 54 0.0019 19.2 3.1 22 5-26 9-30 (36)
237 1tf6_A Protein (transcription 27.9 32 0.0011 28.8 2.6 17 9-25 48-64 (190)
238 2ytt_A Zinc finger protein 473 27.6 29 0.00098 21.9 1.8 35 5-48 12-46 (46)
239 2dam_A ETEA protein; KIAA0887, 27.4 1.3E+02 0.0044 22.1 5.6 42 114-156 18-61 (67)
240 1loi_A Cyclic 3',5'-AMP specif 26.6 13 0.00046 22.5 -0.0 12 40-51 3-14 (26)
241 2elo_A Zinc finger protein 406 25.8 44 0.0015 19.6 2.4 21 6-26 10-30 (37)
242 2els_A Zinc finger protein 406 25.2 53 0.0018 19.2 2.7 22 5-26 9-30 (36)
243 4g3o_A E3 ubiquitin-protein li 25.1 94 0.0032 22.8 4.3 35 116-152 19-55 (58)
244 3oja_B Anopheles plasmodium-re 24.6 5.2E+02 0.018 25.6 13.3 15 214-228 505-519 (597)
245 3vhs_A ATPase wrnip1; zinc fin 24.3 28 0.00095 21.7 1.1 13 3-15 4-16 (29)
246 3eyy_A Putative iron uptake re 24.2 34 0.0011 28.6 2.0 46 4-51 89-139 (145)
247 2el5_A Zinc finger protein 268 24.1 71 0.0024 19.4 3.2 22 5-26 10-31 (42)
248 1f5n_A Interferon-induced guan 23.5 6.2E+02 0.021 26.1 13.8 11 176-186 480-490 (592)
249 2epc_A Zinc finger protein 32; 23.4 70 0.0024 19.3 3.0 22 5-26 11-32 (42)
250 2elt_A Zinc finger protein 406 23.1 64 0.0022 18.7 2.7 22 5-26 9-30 (36)
251 2ept_A Zinc finger protein 32; 23.1 73 0.0025 19.2 3.1 22 5-26 10-31 (41)
252 2epv_A Zinc finger protein 268 22.7 80 0.0027 19.5 3.3 22 5-26 12-33 (44)
253 2emi_A Zinc finger protein 484 22.5 80 0.0027 19.6 3.3 26 4-31 11-36 (46)
254 1ubd_C Protein (YY1 zinc finge 22.1 56 0.0019 25.0 2.9 21 6-26 35-55 (124)
255 2epu_A Zinc finger protein 32; 21.9 68 0.0023 19.9 2.8 26 4-31 11-36 (45)
256 3h0g_L DNA-directed RNA polyme 21.9 25 0.00087 26.2 0.7 26 26-51 5-30 (63)
257 2eow_A Zinc finger protein 347 21.6 68 0.0023 19.9 2.7 23 4-26 11-33 (46)
258 2i1j_A Moesin; FERM, coiled-co 21.5 1.7E+02 0.0058 30.2 7.1 14 139-152 180-193 (575)
259 2rpc_A Zinc finger protein ZIC 21.3 72 0.0024 25.5 3.5 21 6-26 63-83 (155)
260 2ep1_A Zinc finger protein 484 21.3 72 0.0025 19.8 2.8 22 5-26 12-33 (46)
261 3nr7_A DNA-binding protein H-N 21.3 1.4E+02 0.0046 23.4 4.8 12 248-259 59-70 (86)
262 2yrj_A Zinc finger protein 473 21.2 83 0.0028 19.5 3.1 26 4-31 11-36 (46)
263 3iuf_A Zinc finger protein UBI 21.2 82 0.0028 20.3 3.2 27 4-31 6-32 (48)
264 1tf6_A Protein (transcription 21.1 66 0.0023 26.7 3.3 20 43-62 135-156 (190)
265 2igp_A Retinoblastoma-associat 21.0 41 0.0014 27.8 1.9 41 112-152 70-114 (120)
266 1l4a_E Synaphin A; snare, snar 20.9 58 0.002 25.1 2.5 39 227-272 19-58 (79)
267 2ytp_A Zinc finger protein 484 20.7 85 0.0029 19.5 3.1 26 4-31 11-36 (46)
268 2ekf_A Ancient ubiquitous prot 20.7 94 0.0032 23.0 3.5 38 115-154 14-53 (61)
269 2emb_A Zinc finger protein 473 20.7 82 0.0028 19.3 3.0 22 5-26 12-33 (44)
270 2elm_A Zinc finger protein 406 20.6 90 0.0031 18.5 3.1 20 5-24 9-28 (37)
271 2en7_A Zinc finger protein 268 20.5 67 0.0023 19.6 2.5 21 6-26 13-33 (44)
272 2eq1_A Zinc finger protein 347 20.3 72 0.0024 19.9 2.7 22 5-26 12-33 (46)
273 2yts_A Zinc finger protein 484 20.3 89 0.003 19.3 3.1 22 5-26 12-33 (46)
274 2d9k_A FLN29 gene product; zin 20.3 73 0.0025 23.1 3.0 37 4-51 16-52 (75)
275 2eq3_A Zinc finger protein 347 20.1 69 0.0024 19.9 2.5 25 5-31 12-36 (46)
276 2emg_A Zinc finger protein 484 20.0 77 0.0026 19.7 2.8 22 5-26 12-33 (46)
277 2epa_A Krueppel-like factor 10 20.0 64 0.0022 22.2 2.6 40 4-52 16-59 (72)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.2e-21 Score=212.70 Aligned_cols=123 Identities=29% Similarity=0.484 Sum_probs=104.0
Q ss_pred hhhhhcccccCCCCCCCccccccccccccccccccchhcccccccccc---Cccc---cCCccccccCCC---CC-CCCc
Q 017706 38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDMS---GS-QPEE 107 (367)
Q Consensus 38 e~v~~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~---p~K~---~~~~~~ldl~~~---g~-~~ee 107 (367)
|.+.+|+|+.|+.+ +.++|++.|.+||++|+|+++||.++. |.|+ |..|..|||+.| |. ++|+
T Consensus 559 E~Le~y~C~~C~~k-------~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~ 631 (854)
T 3ihp_A 559 EQVDDFWSTALQAK-------SVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEE 631 (854)
T ss_dssp EEEEEEEETTTTEE-------EEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCC
T ss_pred eEeeeeeccccCCc-------ceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCce
Confidence 33445999999986 789999999999999999999999963 8888 778999999987 44 5553
Q ss_pred c--------------cccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 017706 108 M--------------VEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (367)
Q Consensus 108 ~--------------~~~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~~~~ 167 (367)
. ..+.+|+++|++|++|||+.++|.+||+.|||.+++.||+||++||+|+||++|+..+.
T Consensus 632 ~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~ 705 (854)
T 3ihp_A 632 ELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPG 705 (854)
T ss_dssp BCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-
T ss_pred ecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccc
Confidence 2 13457999999999999999999999999999999999999999999999999997654
No 2
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.72 E-value=4.5e-18 Score=129.95 Aligned_cols=57 Identities=40% Similarity=0.628 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~~~~~ 168 (367)
.+|++.|++|++|||++++|.+||++|||.+++.||+|||+|++|||+|+|+..|.+
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~~~~ 63 (64)
T 2crn_A 7 GSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGPSS 63 (64)
T ss_dssp CCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCCCSC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCCCCC
Confidence 457788999999999999999999999999999999999999999999999977653
No 3
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.65 E-value=1.7e-16 Score=127.29 Aligned_cols=59 Identities=37% Similarity=0.638 Sum_probs=54.8
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 017706 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (367)
Q Consensus 110 ~~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~~~~~ 168 (367)
.+.+|++.|++|++|||++++|++||++|+|.+++.|++|||+|++|+|||+|+..|++
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~p~~~~~~ 83 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISGPSS 83 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSCSSSCCC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccCCCCCCC
Confidence 45679999999999999999999999999988999999999999999999999987653
No 4
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=124.26 Aligned_cols=59 Identities=37% Similarity=0.738 Sum_probs=54.9
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 017706 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (367)
Q Consensus 110 ~~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~~~~~ 168 (367)
.+.+|++.|++|++|||++.+|++||++|+|.++|.|++|||+|++|+++|+|+..|+.
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d~p~~~~~~ 63 (74)
T 2dag_A 5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGS 63 (74)
T ss_dssp CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSSSCSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccccccCCCCC
Confidence 45689999999999999999999999999987899999999999999999999987753
No 5
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.60 E-value=7.2e-16 Score=117.65 Aligned_cols=54 Identities=44% Similarity=0.788 Sum_probs=50.8
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPM 164 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~ 164 (367)
..+|++.|.+|++|||++.+|++||++|||.+++.|++|||+|++|+|+|+|+.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d~pl~ 59 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLS 59 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccccccC
Confidence 457889999999999999999999999987799999999999999999999986
No 6
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=116.27 Aligned_cols=57 Identities=26% Similarity=0.468 Sum_probs=53.4
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 017706 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (367)
Q Consensus 110 ~~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~~~~ 167 (367)
.+.+++..|.+|++|||++.+|.+||++|+| +++.|++|||+|++|+|+|+|+..|+
T Consensus 5 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~d~d~d~p~~~p~ 61 (63)
T 2dak_A 5 SSGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDLDAEAAMSGPS 61 (63)
T ss_dssp SCCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHHSCCSSSCCCCSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCcccccCCCCCC
Confidence 3568999999999999999999999999998 89999999999999999999998775
No 7
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=121.42 Aligned_cols=56 Identities=41% Similarity=0.697 Sum_probs=52.5
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~~~~ 167 (367)
+.+|++.|++|++|||++.+|.+||++|+| +++.|++|||+|++|+++|+|+..|+
T Consensus 26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~-nve~A~ewL~~~~~d~d~d~pl~~~~ 81 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQLNHM-SVPQAMEWLIEHAEDPTIDTPLSGPS 81 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHGGGCSTTCCCCCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccccCCCCCC
Confidence 568999999999999999999999999966 99999999999999999999997765
No 8
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.49 E-value=5.2e-14 Score=120.13 Aligned_cols=55 Identities=33% Similarity=0.733 Sum_probs=51.7
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCC
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVP 166 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~~~ 166 (367)
+||+..|.+|++|||++.+|.+||++|||.+++.||+||++|++|+++++|+..+
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~ 55 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMP 55 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccccccccc
Confidence 4789999999999999999999999999999999999999999999999887654
No 9
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.45 E-value=3.9e-14 Score=108.05 Aligned_cols=46 Identities=35% Similarity=0.603 Sum_probs=44.1
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 017706 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (367)
Q Consensus 113 ~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d 158 (367)
+|++.|++|++|||++++|++||++|+|.+++.|++|||+|++|||
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 6888999999999999999999999998899999999999999986
No 10
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.40 E-value=1.7e-13 Score=102.91 Aligned_cols=42 Identities=19% Similarity=0.488 Sum_probs=39.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 114 d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
.++.|++|++|||+.++|.+||++||| |+|+|+||||+|+|-
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 457899999999999999999999999 999999999999985
No 11
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.37 E-value=1.3e-12 Score=99.27 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=50.0
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~~~~~ 167 (367)
.++++.|++|++|||++.+|.+||..|+| +++.|++|||+|.++.+...|+..++
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~~~~~~~~p~~~~~ 61 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQKPVMGPPSGPS 61 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHSSCCCCCSSCCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccCCCCCCCC
Confidence 47899999999999999999999999998 99999999999999988877776543
No 12
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=99.36 E-value=1.5e-13 Score=117.66 Aligned_cols=60 Identities=30% Similarity=0.437 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHhhhccCCChhhhhhhhccccccccccccccC
Q 017706 301 EQMRECLRSLKQNHKDDDAKVKRAFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQVWNFFTID 363 (367)
Q Consensus 301 ~QlR~~l~sLk~~~~~~~a~~~~a~~tL~kyl~Ni~~~P~eeK~rkIr~~N~~f~~~~~~~~~ 363 (367)
..++.++.+|+.++ .+.+.+|++||.+|++||+.||+|+|||+||++|++|+++|+..-|
T Consensus 16 ~~l~~~l~~L~~n~---~~~~~~a~~tL~kil~NIl~~P~e~KyRkIRl~N~~f~~~V~~~~G 75 (124)
T 2d5u_A 16 SSASPAVAELCQNT---PETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRG 75 (124)
T ss_dssp SSCCHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHSSSCGGGSEEECCCHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHcCCCcccceeeecCCHHHHHHhcCCcc
Confidence 45668888888766 3468999999999999999999999999999999999999987754
No 13
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=99.36 E-value=2e-13 Score=112.56 Aligned_cols=56 Identities=34% Similarity=0.488 Sum_probs=50.0
Q ss_pred HHHHhhhhhcCCChHHHHHHHHHHHHHHhhhccCCChhhhhhhhccccccccccccccC
Q 017706 305 ECLRSLKQNHKDDDAKVKRAFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQVWNFFTID 363 (367)
Q Consensus 305 ~~l~sLk~~~~~~~a~~~~a~~tL~kyl~Ni~~~P~eeK~rkIr~~N~~f~~~~~~~~~ 363 (367)
.++.+|..++ .+.+.+|++||.+|++||+.||+|+|||+||++|++|+++|++.-|
T Consensus 5 ~~l~~L~~n~---~~~~~~a~~tL~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~~~G 60 (99)
T 2ccq_A 5 PAVAELCQNT---PETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRG 60 (99)
T ss_dssp HHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTSTT
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHHHHHHHHcCCCCcccceeecCCHHHHHHhcCCcc
Confidence 5778887666 3468999999999999999999999999999999999999988754
No 14
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.27 E-value=4.9e-12 Score=98.81 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=45.1
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 017706 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (367)
Q Consensus 110 ~~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d 158 (367)
.+.+++..|.+|++|||++.+|++||..|+| +++.|++|||+|++|+.
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCCCCC
Confidence 4568999999999999999999999999998 99999999999999873
No 15
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.2e-12 Score=91.42 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=40.1
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 110 ~~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
.+.+|+..|.+|++|||++.+|.+||.+|| +++.|++|||+|+
T Consensus 5 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 5 SSGVNQQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLTHP 47 (47)
T ss_dssp CCSSCHHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHcCC
Confidence 467899999999999999999999999995 7999999999985
No 16
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.23 E-value=1.6e-11 Score=98.58 Aligned_cols=52 Identities=31% Similarity=0.438 Sum_probs=45.0
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCC
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMP 163 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~dep~ 163 (367)
..+|+..|.+|++|||++.+|++||..+ |.+++.|++|||+|++|+|.....
T Consensus 18 ~~~n~~~I~qL~~MGF~~~~a~~AL~~~-n~n~e~A~ewL~~h~~D~D~~~~~ 69 (85)
T 2dkl_A 18 AWIMSRLIKQLTDMGFPREPAEEALKSN-NMNLDQAMSALLEKKVDVDKRGLG 69 (85)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHT-TSCHHHHHHHHHTTSCCSSCCCCT
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHHc-CCCHHHHHHHHHHCcCCcccccCC
Confidence 4578999999999999999999999554 459999999999999999865543
No 17
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.23 E-value=2.2e-12 Score=92.65 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=41.6
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 017706 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (367)
Q Consensus 113 ~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d 158 (367)
-+++.|++|++|||++..|.+||.++|+ +++.|++|||+|++|++
T Consensus 3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~-n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 3 QEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDDE 47 (47)
T ss_dssp CCHHHHTTTTTTTCCHHHHHHHHTTTTS-CHHHHHHHTTSCCCCCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCcCCCC
Confidence 3678899999999999999999999996 99999999999999873
No 18
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.21 E-value=1e-11 Score=87.11 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=38.3
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 113 ~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
++++.|++|++|||+++.|.+||..|+| +++.|++|||+|.
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHcCC
Confidence 5678999999999999999999999987 9999999999983
No 19
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.19 E-value=1.6e-11 Score=89.77 Aligned_cols=42 Identities=31% Similarity=0.530 Sum_probs=40.1
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (367)
+++|..+|++|++|||++++|.+||..|||.+++.||+||..
T Consensus 6 ~~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 6 SGVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CSCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 478999999999999999999999999999999999999976
No 20
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.18 E-value=7.2e-12 Score=106.33 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc--CCCCCCCC
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE--NDPDIDEM 162 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~--dd~d~dep 162 (367)
..+.++|.+|++||||.++|.|||+.||| +++.||+|||+|+ +|+++|+|
T Consensus 6 ~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~ 57 (118)
T 4ae4_A 6 PSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPL 57 (118)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChh
Confidence 44678999999999999999999999999 9999999999998 45555543
No 21
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.16 E-value=6.9e-11 Score=94.42 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=43.8
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 017706 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (367)
Q Consensus 110 ~~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (367)
...++++.|++|++|||++.+|++||..|+| +++.|++|||+|+++.
T Consensus 25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~~i 71 (83)
T 1veg_A 25 QASPSQESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGGSL 71 (83)
T ss_dssp SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence 4567899999999999999999999999998 8999999999999974
No 22
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.09 E-value=8.3e-11 Score=100.24 Aligned_cols=48 Identities=31% Similarity=0.617 Sum_probs=44.8
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC-CCCCC
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN-DPDID 160 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~d-d~d~d 160 (367)
.+++..|.+|++|||++++|.+||..||| +++.|++|||+|++ |+|+|
T Consensus 76 ~~~e~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~e~L~~~~~~d~~~d 124 (126)
T 2lbc_A 76 QPPEEIVAIITSMGFQRNQAIQALRATNN-NLERALDWIFSHPEFEEDSD 124 (126)
T ss_dssp CCCHHHHHHHHHHTSCHHHHHHHHHHHTS-CHHHHHHHHHTCCSSCCCCC
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCccCCC
Confidence 47999999999999999999999999988 99999999999999 87654
No 23
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.06 E-value=1.2e-10 Score=84.17 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=38.2
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (367)
..+++.|++|++|||+++.|.+||..|+| +++.|++||++|
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 34678899999999999999999999998 999999999997
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.98 E-value=4.6e-10 Score=82.07 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=37.5
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 114 d~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
-+..|.+|++||| ++.++.+||..|+| +++.|++|||+|+
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~~~ 52 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGG-DINAAIERLLGSS 52 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhCc
Confidence 4678999999999 99999999999998 9999999999985
No 25
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.95 E-value=9.8e-10 Score=85.81 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=41.8
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 110 ~~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
...+.++.|++|++|||++..|.+||..++| +++.|++|||.|.+.
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSGP 70 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSCS
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence 3456789999999999999999999999998 999999999998764
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.95 E-value=9.1e-10 Score=80.76 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 115 KELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 115 ~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
+..|.+|++||| ++.++.+||..|+| |++.|++|||+|.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGG-DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHcC
Confidence 456999999999 99999999999999 9999999999986
No 27
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.84 E-value=3.3e-09 Score=72.57 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 017706 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV 151 (367)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~ 151 (367)
++.|++|++|||+++.|.+||..|++ +++.|++|||
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 56899999999999999999999987 9999999995
No 28
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.75 E-value=1.1e-08 Score=75.31 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCH-HHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 115 KELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 115 ~~~l~~L~~MGF~~-~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
+..|.+|++|||+. .++.+||..|++ +++.|++|||+|++.
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 67899999999965 567999999998 999999999999865
No 29
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.75 E-value=1.1e-08 Score=73.06 Aligned_cols=38 Identities=32% Similarity=0.508 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 115 KELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEH 153 (367)
Q Consensus 115 ~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (367)
+..|++|++|||+ +..+.+||..|+| |++.|++|||+|
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 5679999999995 7788999999998 999999999986
No 30
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.72 E-value=1e-08 Score=78.73 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCH-HHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 017706 115 KELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHENDP 157 (367)
Q Consensus 115 ~~~l~~L~~MGF~~-~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (367)
+..|.+|.+|||.. .++.+||..|+| |++.|++|||+|.++.
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 45799999999965 555999999998 9999999999998875
No 31
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.70 E-value=1.6e-08 Score=79.06 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=38.3
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 017706 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP 157 (367)
Q Consensus 114 d~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (367)
-+..|.+|++||| ++.++.+||..++| +++.|++|||.|++.+
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGASGPS 72 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCCCCC
Confidence 3667999999999 58899999999998 9999999999997654
No 32
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.67 E-value=2.3e-08 Score=74.71 Aligned_cols=39 Identities=31% Similarity=0.518 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 115 KELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 115 ~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
+..|++|++|||+ +..+.+||..|++ +++.|++|||+|+
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 5679999999995 7888999999998 9999999999985
No 33
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.52 E-value=7.8e-08 Score=81.45 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=39.1
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
..+++..+.+|++|||+...|++||..|+| +++.|++|||...
T Consensus 73 ~~~~~~~v~~L~eMGF~~~~a~~AL~~~~n-d~erAlewL~~~~ 115 (118)
T 4ae4_A 73 MMEFLQLMSKFKEMGFELKDIKEVLLLHNN-DQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 345778999999999999999999999999 9999999999753
No 34
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.38 E-value=9.4e-08 Score=95.08 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (367)
..+++.|.+|++|||++++|.+||++++| |++.|++|||+|++|.
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGIPGS 210 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTSSTTC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 45888999999999999999999999999 9999999999998876
No 35
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.31 E-value=1.1e-06 Score=63.95 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=36.2
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (367)
+++-++.+.+|++|||+++.|.+||..|+| +++.|.+.|.+-
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef 49 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF 49 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence 334458999999999999999999999999 999999999874
No 36
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.21 E-value=1.6e-06 Score=72.34 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=36.9
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 017706 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHEN 155 (367)
Q Consensus 114 d~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~d 155 (367)
-+.-|++|.+||| ++.++.+||..+++ |++.|++|||++.+
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcCC
Confidence 4778999999999 46899999999998 99999999999864
No 37
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.17 E-value=3.1e-06 Score=61.79 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=38.7
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~d 155 (367)
+++-+..+.+|++|||+++.+.+||..|+| |++.|.+.|.+..-
T Consensus 6 ~~~~e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 6 SGQLSSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG 49 (53)
T ss_dssp CSCSHHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence 344567799999999999999999999998 99999999988653
No 38
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.16 E-value=1.9e-06 Score=63.24 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=39.6
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
+.+.++.+.+|++|||+++.+.+||..++| +++.|.|.|.+-.--
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVSI 48 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCCC
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHcc
Confidence 445677899999999999999999999999 999999999985443
No 39
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.08 E-value=9.7e-07 Score=87.78 Aligned_cols=46 Identities=26% Similarity=0.428 Sum_probs=42.6
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (367)
...+.+.++.|++|||++..|.+||.++++ |++.|++|||+|++|.
T Consensus 322 t~ee~eaI~rL~~mGF~~~~a~~al~a~~~-n~e~A~~~L~~~~~d~ 367 (368)
T 1oqy_A 322 TPQEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDD 367 (368)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS-CSSHHHHHHHHHHCCC
T ss_pred CCcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhhCcCcC
Confidence 345899999999999999999999999997 8999999999999985
No 40
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.95 E-value=1.6e-05 Score=56.25 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
+..+.+|++|||+++.+.+||-.++| +++.|.|-|.+..
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~ 43 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence 46789999999999999999999998 9999999998754
No 41
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=97.76 E-value=3.9e-06 Score=79.84 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=44.9
Q ss_pred cccccCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCc-cccccCCC
Q 017706 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (367)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~--p~K~---~~~~-~~ldl~~~ 101 (367)
|.|+.|+++ +.++|+..|.++|++|+|+.+||.... +.|+ +..| +.|||+.|
T Consensus 227 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~ 284 (355)
T 3i3t_A 227 PVCDRCRQK-------TRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDF 284 (355)
T ss_dssp CCCSSSCCC-------CCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGG
T ss_pred eeCCCCCCc-------cceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhh
Confidence 999999987 789999999999999999999999885 6676 5566 56888755
No 42
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=97.68 E-value=3.6e-06 Score=82.16 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=46.8
Q ss_pred hhcccccCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 017706 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (367)
Q Consensus 41 ~~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (367)
+++.|+.||+. ..++|+..|.++|++|+|+.+||.++. ..|+ |..|..|||+.|
T Consensus 208 l~~~c~~c~~~-------~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~ 268 (404)
T 2ayn_A 208 ITKQSPTLQRN-------ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYEL 268 (404)
T ss_dssp CCCEETTTTEE-------CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGG
T ss_pred eeecchhhCCc-------cceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHh
Confidence 45899999975 678999999999999999999999984 5677 667889999866
No 43
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.64 E-value=5.9e-05 Score=55.46 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=38.5
Q ss_pred ccCHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 112 EVDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
+.+...|.+|.+||| ...+-.+||..+|+ +++.||++|+...+.
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSGP 51 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSSS
T ss_pred HhhHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence 346778999999999 89999999998887 899999999987654
No 44
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.62 E-value=3.6e-06 Score=65.44 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 017706 144 EAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQEL 190 (367)
Q Consensus 144 E~A~~Wl~~h~dd~d~dep~~~~~~~~~~~~k~~lT~EEk~~k~~el 190 (367)
++||+|||+|++|||||+|+..+. +--.+++..+|.++
T Consensus 2 ~~am~wl~~h~dDpd~d~pl~~~~---------~~~~~~~v~~L~~M 39 (73)
T 1wiv_A 2 SSGSSGLLSHMDDPDIDAPISHQT---------SDIDQSSVDTLLSF 39 (73)
T ss_dssp CCCCCCCSSCCSCSCSSCCSCCSS---------CSSCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCccCCCCCCC---------CCCCHHHHHHHHHc
Confidence 468999999999999999986521 11236666666655
No 45
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.61 E-value=3.1e-05 Score=84.32 Aligned_cols=47 Identities=30% Similarity=0.555 Sum_probs=42.7
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 017706 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (367)
Q Consensus 111 ~~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d 158 (367)
..++++.+++|.+|||+..+|.+||..|+| +++.|++|||+|++|.+
T Consensus 717 ~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~-~~eraidwlfs~~d~~~ 763 (854)
T 3ihp_A 717 DPPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDLD 763 (854)
T ss_dssp --CCHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHhhcC-cHHHHHHhhhcCccccc
Confidence 467999999999999999999999999998 99999999999998753
No 46
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.53 E-value=8.6e-05 Score=67.58 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (367)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (367)
++.|++|++|||+++.|..||...++ +++.|++|||+|
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~~ 201 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSW-DVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 67899999999999999999999888 999999999986
No 47
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=97.51 E-value=7.6e-06 Score=82.19 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=46.3
Q ss_pred cccccCCCCCCCccccccccccccccccccchhcccccccccc---Cccc---cCCccccccCCC
Q 017706 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDMS 101 (367)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~---p~K~---~~~~~~ldl~~~ 101 (367)
|.|+.|+.. ..++|+..|.++|++|+|+++||.+.. +.|+ +..|..|||+.|
T Consensus 339 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~ 396 (476)
T 3mhs_A 339 YHCGECNST-------QDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNY 396 (476)
T ss_dssp CEETTTTEE-------CCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGG
T ss_pred CcCCccCCc-------ccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhh
Confidence 999999986 789999999999999999999999763 7777 678899999876
No 48
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.48 E-value=7.4e-05 Score=66.95 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=37.3
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 113 ~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
.+.+.|+.|++|||++..+..|+.+++. +++.|.+|||+|+.|
T Consensus 129 ee~eaI~rL~~mGF~r~~viqA~~ac~k-nee~Aan~L~~~~~d 171 (171)
T 2qsf_X 129 EDDQAISRLCELGFERDLVIQVYFACDK-NEEAAANILFSDHAD 171 (171)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHTTC---
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence 4668899999999999999999999987 999999999998765
No 49
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=97.35 E-value=1.8e-05 Score=75.05 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=44.2
Q ss_pred cccccCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCc-cccccCCC
Q 017706 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (367)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~--p~K~---~~~~-~~ldl~~~ 101 (367)
|.|+.|+.. ..++|+..|.++|++|+|+.+||.... ..|+ +..| ..|||+.|
T Consensus 217 ~~C~~C~~~-------~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~ 274 (348)
T 3nhe_A 217 PTCCRCRGR-------KRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF 274 (348)
T ss_dssp CEETTTTEE-------CCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGG
T ss_pred eECCCCCCc-------ccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhh
Confidence 899999986 789999999999999999999998875 6666 5566 57888765
No 50
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.21 E-value=0.00042 Score=57.33 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=37.1
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 115 KELLKELEAM-GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 115 ~~~l~~L~~M-GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
++.|..|++| ||+++.|+.||..+++ +++.|++.||+...|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ng-Dl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 3568999999 9999999999999998 999999999987654
No 51
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=97.19 E-value=6.1e-05 Score=74.16 Aligned_cols=54 Identities=6% Similarity=-0.106 Sum_probs=38.8
Q ss_pred hhcccccCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 017706 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (367)
Q Consensus 41 ~~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (367)
+++.|+.||.. ..++|++.|.++|++|+|+.+||.++. +.|+ |..|..|||+.|
T Consensus 200 i~~~c~~c~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~ 260 (415)
T 1vjv_A 200 IEKRSDLTGAN-------SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADM 260 (415)
T ss_dssp ---------CC-------CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGG
T ss_pred hhhcccccCCc-------ccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHh
Confidence 45899999986 678999999999999999999999984 4676 667889999754
No 52
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=97.17 E-value=4.4e-05 Score=73.84 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=45.5
Q ss_pred hcccccCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCcc-ccccCCC
Q 017706 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEE-AIDVDMS 101 (367)
Q Consensus 42 ~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~--p~K~---~~~~~-~ldl~~~ 101 (367)
.|.|+.|+++ ..++|++.|.++|++|+|+.+||.+.. +.|+ +..|. .|||+.|
T Consensus 231 ~~~C~~C~~~-------~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 289 (367)
T 2y6e_A 231 PWYCPNCKKH-------QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEF 289 (367)
T ss_dssp CEEETTTTEE-------ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGG
T ss_pred CccCCCCCCC-------ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhh
Confidence 3899999986 789999999999999999999999985 6676 55675 6999865
No 53
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=97.11 E-value=7e-05 Score=72.57 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=40.9
Q ss_pred cccccCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 017706 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (367)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (367)
|.|+.|+. ..++|++.|.++|++|+|+.+||.++. ..|+ +..|..|||+.|
T Consensus 172 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~ 229 (353)
T 1nb8_A 172 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEF 229 (353)
T ss_dssp EECGGGCE--------ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGG
T ss_pred ccCCcCcc--------EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhh
Confidence 88999985 478999999999999999999999874 5676 667889999754
No 54
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=96.90 E-value=0.00012 Score=72.19 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=44.3
Q ss_pred cccccCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCc-cccccCCC
Q 017706 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (367)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~--p~K~---~~~~-~~ldl~~~ 101 (367)
|.|+.|+.. ..++|++.|.++|++|+|+.+||.++. ..|+ +..| +.|||+.|
T Consensus 269 ~~C~~C~~~-------~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 326 (396)
T 2gfo_A 269 FYCSHCRAR-------RDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQY 326 (396)
T ss_dssp EEETTTTEE-------ECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGG
T ss_pred cccCCcccc-------cceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhcccccc
Confidence 999999986 678999999999999999999999985 4566 5566 57999865
No 55
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=96.22 E-value=0.001 Score=67.79 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=43.5
Q ss_pred cccccCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 017706 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (367)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (367)
|.|+.|+. ..|+|+..|.++|++|+|+.+||.++. ..|+ +..|..|||+.|
T Consensus 341 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~ 398 (522)
T 2f1z_A 341 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEF 398 (522)
T ss_dssp BCCGGGCS--------BCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGG
T ss_pred eecCcCCc--------cceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhh
Confidence 88999986 478999999999999999999999874 5676 667888998754
No 56
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=95.62 E-value=0.014 Score=55.12 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (367)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (367)
.+.|+.|++|||+++.|..||...|. +++.|++.||++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nW-d~~~A~e~L~~~ 253 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSW-DVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 56799999999999999999999887 999999999973
No 57
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.11 E-value=0.078 Score=39.32 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=38.6
Q ss_pred ccccCHHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 017706 110 EPEVDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHENDP 157 (367)
Q Consensus 110 ~~~~d~~~l~~L~~MGF~---~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (367)
.+.+.++.+.+|.+| || ...++.+|..++| +++.||+-|++..++.
T Consensus 5 ~~~~~ee~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGEEP 53 (59)
T ss_dssp SSSSCHHHHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSCCC
T ss_pred CCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcCCC
Confidence 456789999999999 76 5788888888877 9999999999966654
No 58
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.78 E-value=0.087 Score=39.82 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=37.1
Q ss_pred cccCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 111 PEVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 111 ~~~d~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
..++.+.|..|.+ -|.+..-|++||..+++ |++.|++||....
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~G-Di~~Ai~~Lr~kg 49 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGG-DLKQAEIWLHKEA 49 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTS-CHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHHh
Confidence 4567788888886 59999999999999998 9999999998653
No 59
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=89.86 E-value=0.22 Score=36.12 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCHHHHH--HHHHHhCCCCHHHHHHHH
Q 017706 116 ELLKELEAMGFPVARAT--RALHYSGNANVEAAVNWV 150 (367)
Q Consensus 116 ~~l~~L~~MGF~~~~a~--kAL~~tgn~~~E~A~~Wl 150 (367)
++|.+|++|||+..-.- +.| .+.|.++..|+|-|
T Consensus 12 ~al~qMl~MGF~negGWLt~LL-~~k~gDI~~aLD~l 47 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLL-QTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHH-HHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCccccHHHHHH-HHccCCHHHHHHHh
Confidence 56899999999986653 445 44555899999866
No 60
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=89.28 E-value=0.13 Score=36.37 Aligned_cols=42 Identities=24% Similarity=0.408 Sum_probs=32.1
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
-..+|..||..+.....-+.|.. +-|.. + ...|.|+.||+.|
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~-~~H~~--~----~~~~~C~~C~k~f 50 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYV-TSHKR--N----VKVYPCPFCFKEF 50 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHH-HHSSS--S----CCCEECTTTCCEE
T ss_pred cceECCCCcchhCCHHHHHHHHH-HHcCC--C----CcCeECCCCCCcc
Confidence 45789999999999999999987 33521 1 1348999999864
No 61
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=88.87 E-value=0.17 Score=35.79 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=25.6
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
.-+|.+||.+.....+-- +-|.+. -.+++||.||.+
T Consensus 4 ~y~C~vCGyvyd~~~Gd~--------t~f~~l---P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN--------VPFDQL---PDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTT--------CCGGGS---CTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCC--------cchhhC---CCCCcCcCCCCc
Confidence 358999999986543211 667766 456999999964
No 62
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.85 E-value=0.37 Score=36.62 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=35.4
Q ss_pred cCHHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 113 VDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 113 ~d~~~l~~L~~MGF~---~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
.-+..+.+|.+| || ...+++.|..+|+ +++.||+-|+...++
T Consensus 17 ~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 17 EFNQAMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNLE 61 (67)
T ss_dssp CSHHHHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCC
Confidence 356789999999 86 4788899999988 999999999986554
No 63
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.70 E-value=0.72 Score=36.00 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=32.6
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
-..+|..||..+.....-+.|...+||. ++. .-+.|+.||+.|
T Consensus 18 ~~~~C~~C~k~f~~~~~L~~H~~~~~h~--~~~----~~~~C~~C~~~f 60 (115)
T 2dmi_A 18 SKFRCKDCSAAYDTLVELTVHMNETGHY--RDD----NHETDNNNPKRW 60 (115)
T ss_dssp CSEEBSSSSCEESSHHHHHHHHHHTCCC--BCS----CCCCCCCCCSCC
T ss_pred CCEECCccCchhcCHHHHHHHHHHhCcc--ccC----CCccCCCCCccc
Confidence 3478999999999999999999866663 221 224599999864
No 64
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=86.90 E-value=0.2 Score=34.10 Aligned_cols=40 Identities=20% Similarity=0.537 Sum_probs=31.2
Q ss_pred eecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCC
Q 017706 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~ 54 (367)
.+|..||..+.....-+.|.. .|.. ...|.|+.||+.|.+
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIR--THTD-------VRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH--HTSS-------CCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCHHHHHHHHH--hcCC-------CCCccCCCCCchhcC
Confidence 479999999999999999987 3542 124899999986533
No 65
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=86.79 E-value=0.14 Score=37.06 Aligned_cols=43 Identities=23% Similarity=0.545 Sum_probs=27.6
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
+-+|.+||.|-.+..+--.+.-.-|. -|.+. -.+++||.||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt-~f~~l---P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGT-KFEDL---PDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTC-CGGGS---CTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCC-CHhHC---CCCCcCCCCCCC
Confidence 46899999998665443333222232 36555 456999999964
No 66
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=86.36 E-value=0.41 Score=34.92 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=32.1
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
-..+|..|+..+.....-+.|.. +-|.. + ...|.|+.|++.|
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~-~~h~~--~----~~~~~C~~C~~~f 55 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHIL-QKHTE--N----VAKFHCPHCDTVI 55 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHH-HHSSS--S----CSSEECSSSSCEE
T ss_pred CCeECCCcCchhCCHHHHHHHHH-HhcCC--C----CCccCCCCCCCcc
Confidence 35789999999999999999986 34432 1 1349999999864
No 67
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=85.77 E-value=0.58 Score=35.08 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=13.8
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..|+..+.....-..|..
T Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~ 28 (95)
T 2yt9_A 7 GVACEICGKIFRDVYHLNRHKL 28 (95)
T ss_dssp CEECSSSCCEESSSHHHHHHHH
T ss_pred CeECCCCCCccCChHHHHHHHH
Confidence 4566666666666666666655
No 68
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=85.57 E-value=1.4 Score=29.99 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=32.1
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
-..+|..|+..+.....-+.|.. +-|.. ...|.|+.||+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~-~~H~~-------~k~~~C~~C~k~F 51 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLNGHIK-QVHTS-------ERPHKCQVWVSGP 51 (54)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH-HTSCC-------CCCCCSSSSCCSS
T ss_pred CCeECCCCCcccCCHHHHHHHHH-HhcCC-------CCCccCCCCCCCC
Confidence 45789999999999999999976 35543 1248999999865
No 69
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=85.27 E-value=0.18 Score=36.39 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=27.0
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
+-+|.+||.|-.+..+--.+.-.-| +-|.+. -.+++||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPG-TKFEDL---PDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSS-CCTTSS---CTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCC-CchHHC---CCCCcCCCCCCc
Confidence 4689999999765443222222123 236665 456999999964
No 70
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=84.65 E-value=0.34 Score=35.21 Aligned_cols=40 Identities=28% Similarity=0.540 Sum_probs=31.8
Q ss_pred eecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCC
Q 017706 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~ 54 (367)
-+|..||..+.....=+.|.. .|+. ..-|.|+.||+.|..
T Consensus 5 y~C~~C~k~F~~~~~L~~H~~--~Ht~-------ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRHRR--AHLG-------YRPRSCPECGKCFRD 44 (60)
T ss_dssp EECTTTCCEESSHHHHHHHHH--HHHT-------CCCEECTTTCCEESS
T ss_pred ccCCCCCCEeCCHHHHHHHHH--HhCC-------CcCeECCCCCCCcCC
Confidence 589999999999999999986 5742 124899999997533
No 71
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=84.63 E-value=0.18 Score=39.75 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=27.3
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
+-+|.+||.|-.+..+--...-.-| +-|.+. -.+++||.||-+
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAG-TRWDDI---PDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTT-CCTTTS---CTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 6799999999866543222222123 236655 456999999975
No 72
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=84.32 E-value=0.53 Score=33.61 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=32.6
Q ss_pred CceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 3 ~~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
.-..+|..||..+.....-+.|.. + |.. + .-|.|+.|++.|
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~-~-H~~--~-----~~~~C~~C~~~f 47 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHER-I-HCT--D-----RPFKCNYCSFDT 47 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHG-G-GCC--S-----CSEECSSSSCEE
T ss_pred CCCeECCCCCcccCCHHHHHHHHH-H-cCC--C-----CCEeCCCCCCcc
Confidence 446799999999999999999987 3 642 1 238999999864
No 73
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=84.28 E-value=0.17 Score=36.95 Aligned_cols=43 Identities=19% Similarity=0.439 Sum_probs=27.2
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
+-+|.+||.+-.+..+--.+.-.-| +-|.+. -.+++||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAG-TRWEDI---PADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTT-CCGGGS---CTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 4689999999866543222222223 235554 456999999974
No 74
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=84.25 E-value=0.62 Score=32.01 Aligned_cols=40 Identities=20% Similarity=0.456 Sum_probs=31.5
Q ss_pred eecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCC
Q 017706 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~ 54 (367)
.+|..||..+.....-+.|.. .|.. ...|.|+.||+.|.+
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYR--SHTN-------EKPYPCGLCNRAFTR 42 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHH--TTTS-------SCSEECTTTCCEESS
T ss_pred CcCCCCccccCCHHHHHHHHH--HhCC-------CCCccCCCCCCccCC
Confidence 579999999999999999987 3642 124899999986533
No 75
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.97 E-value=0.61 Score=36.43 Aligned_cols=47 Identities=28% Similarity=0.602 Sum_probs=35.0
Q ss_pred eeecCCCcccc-cchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccccc
Q 017706 5 SLKCGDCGALL-RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 5 ~l~C~~C~~v~-~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
..+|..||..+ .....-+.|.. -| ++- -|.|+.||+.|........|
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~--~h---~~k-----~~~C~~Cgk~F~~~~~L~~H 81 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHME--NC---KQE-----MFTCHHCGKQLRSLAGMKYH 81 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHH--HH---CCC-----CCCCSSSCCCCSSHHHHHHH
T ss_pred CcCCCCCCCCcccCHHHHHHHHH--HH---CCC-----CeECCCCCCeeCCHHHHHHH
Confidence 46899999999 89999999987 46 332 48999999986544433333
No 76
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=83.34 E-value=0.25 Score=33.63 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=30.3
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
..+|..||..+.....-+.|.. .|.. ...|.|+.||+.|
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 42 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLR--THTG-------EKPYKCEFCEYAA 42 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHH--HHHC-------CCCEECSSSSCEE
T ss_pred CccCCCCcchhCChHHHHHHHH--HcCC-------CCCcCCCCCcchh
Confidence 4689999999999999999987 3532 1238999999864
No 77
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.20 E-value=0.5 Score=34.05 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=31.9
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
-..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.|
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~--~h~~-------~~~~~C~~C~~~f 52 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQR--VHTG-------EKPYKCLECGKAF 52 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH--GGGC-------SCCEECSSSCCEE
T ss_pred CCccCCCCCCccCCHHHHHHHHH--hcCC-------CCCeECCCCCccc
Confidence 45789999999999999999987 3542 1248999999864
No 78
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=83.03 E-value=0.19 Score=40.19 Aligned_cols=43 Identities=16% Similarity=0.426 Sum_probs=27.0
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
+-+|.+||+|..+..+--.+.-.-| +-|.+. -.++.||.||-.
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPG-TRFEDI---PDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSC-CCGGGC---CTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCC-CChhHC---CCCCCCCCCCCC
Confidence 5799999999865543222222122 235554 456999999964
No 79
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=81.93 E-value=0.31 Score=35.56 Aligned_cols=43 Identities=19% Similarity=0.448 Sum_probs=27.3
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
+-+|.+||.|-....+--.+.-.- -+.|.+. -.+++||.||-.
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~p-Gt~fe~l---P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNP-GTDFKDI---PDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCT-TCCGGGS---CTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCC-CCChhHC---CCCCcCcCCCCc
Confidence 358999999986654322222212 2456655 556999999963
No 80
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=81.87 E-value=0.43 Score=34.48 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=32.8
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCc
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~ 55 (367)
-..+|..||..+.....-+.|.. .|.. ..-|.|+.||+.|.+.
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~--~H~~-------~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKT--VHTG-------EKPYRCNICGAQFNRP 58 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHH--HHCC-------CCSEECTTTCCEESCH
T ss_pred CCeECCCCCceeCCHHHHHHHHH--HcCC-------CCCEECCCCCchhCCH
Confidence 35689999999999999999986 4542 1238999999875433
No 81
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=81.75 E-value=2.7 Score=29.91 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=33.2
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 115 ~~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
++-+..|.+| ..+...++.+|...+| +++.|++-|++-..+
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~G-d~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNN-DLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTT-CSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Confidence 4668899999 3346888999999887 999999999886443
No 82
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=81.70 E-value=0.24 Score=37.97 Aligned_cols=43 Identities=16% Similarity=0.464 Sum_probs=27.2
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
+-+|.+||.|-.+..+--.+.-.-| +-|.+. -.+++||.||.+
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pG-T~f~~l---Pddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPG-TPFVDL---SDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSS-CCGGGS---CTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCC-CchhhC---CCCCcCCCCCCC
Confidence 5799999999865543222222123 235554 456999999964
No 83
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=80.38 E-value=0.34 Score=44.52 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017706 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (367)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (367)
.+.++.|++|||+++.+..||...|- +++.|++-|++
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~-~~~~~~~~l~~ 214 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANW-NETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCC-chHHHHHHHhc
Confidence 57899999999999999999988776 89999988875
No 84
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.35 E-value=0.51 Score=34.39 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=32.2
Q ss_pred CceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 3 ~~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
.-..+|..||..+.....-..|.. -|..-. ....|.|+.||+.|
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~--~h~~~~----~~~~~~C~~C~k~f 48 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQR--KHAETV----AALRFPCEFCGKRF 48 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHH--HHHHHT----TTCCEECTTTCCEE
T ss_pred CcCeECCCCCCeeCCHHHHHHHHH--HhhccC----CCcccCCCCCCchh
Confidence 446799999999999999889876 343210 12349999999864
No 85
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.26 E-value=0.32 Score=37.68 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=31.9
Q ss_pred ceeecCCCccccc-chHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCC
Q 017706 4 VSLKCGDCGALLR-SVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (367)
Q Consensus 4 ~~l~C~~C~~v~~-g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~ 53 (367)
-..+|..||..+. ....-+.|.. .|.. ...-|.|+.||+.|.
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~H~~--~h~~------~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKKHME--VCQK------LQDALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHHHHH--HHHH------HHHHHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHHHHHHH--HHcC------CCCCEECCCCCCccC
Confidence 3468999999999 8888889986 3432 123599999999753
No 86
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=80.17 E-value=0.75 Score=33.45 Aligned_cols=43 Identities=23% Similarity=0.587 Sum_probs=33.0
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCc
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~ 55 (367)
-..+|..||..+.....-+.|.. .|.. ...|.|+.|++.|...
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~ 59 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRR--THTG-------EKPYKCDECGKAFIQR 59 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHT--TTCC-------SCSEECSSSCCEESSH
T ss_pred CCEECCCCCcccCCHHHHHHHHH--HcCC-------CcCeeCCCCCCccCCH
Confidence 35689999999999999999987 4543 1248999999875443
No 87
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=79.83 E-value=1.1 Score=32.81 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=31.9
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCC-CCcchhhhhhcccccCCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSN-FSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~-F~e~~e~v~~~~C~~Cg~~~ 52 (367)
...+|..|+..+.....-..|.. +-|.. +.+ .-|.|+.|++.|
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~-----~~~~C~~C~~~f 57 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVP-----AAFVCSKCGKTF 57 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHH-HTTCSSCCC-----CCEECSSSCCEE
T ss_pred CCCcCCCCCCccCCHHHHHHHHH-HhcCCcCCC-----cceECCCCCChh
Confidence 45789999999999999999987 33321 111 138999999864
No 88
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=79.69 E-value=0.87 Score=36.53 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=35.0
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCcc
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT 56 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~ 56 (367)
-...|..||..+.....=..|.. +.|..+.+. .-|.|+.||+.|....
T Consensus 17 kpy~C~~Cgk~F~~~~~L~~H~r-~~H~~~~~e----kpf~C~~Cgk~F~~~~ 64 (102)
T 2ghf_A 17 GGYECKYCTFQTPDLNMFTFHVD-SEHPNVVLN----SSYVCVECNFLTKRYD 64 (102)
T ss_dssp SSEECSSCSCEESCHHHHHHHHH-HHCSSCCCS----CCEEETTTTEEESSTH
T ss_pred cCcCCCCCCCccCCHHHHHHHHH-hhCCCCCCC----CCcCCCCCCcccCCHH
Confidence 35789999999999888889986 457553221 2399999998754433
No 89
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=78.78 E-value=0.88 Score=35.26 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=31.8
Q ss_pred eecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCC
Q 017706 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~ 54 (367)
-.|..||..+.....=..|.. .|.. + .-|.|+.||+.|..
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLR--LLHA--A-----QVFPCKYCPATFYS 68 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHH--TTSC--S-----SSEECTTSSCEESS
T ss_pred EECCCCCCCcCcHHHHhhhhh--hccC--C-----CccCCCCCCCEeCC
Confidence 579999999999999999987 4642 2 24999999997533
No 90
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=78.26 E-value=1.8 Score=41.58 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=33.4
Q ss_pred cCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017706 113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVE 152 (367)
Q Consensus 113 ~d~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (367)
++..+|..|-+ -|.+---|++||..++| |++.|++||-.
T Consensus 3 ~ta~~VKeLRe~TGagmmdCKKAL~e~~G-D~ekAie~LR~ 42 (291)
T 1xb2_B 3 SSKELLMKLRRKTGYSFINCKKALETCGG-DLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34567777865 48999999999999998 99999999986
No 91
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=77.75 E-value=1 Score=35.99 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=31.3
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCc
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~ 55 (367)
..+|..||..+.....-+.|.. .| +- .|.|+.||+.|...
T Consensus 74 ~~~C~~C~k~f~~~~~l~~H~~--~H----~~-----~~~C~~C~k~f~~~ 113 (129)
T 2wbt_A 74 QFVCPLCLMPFSSSVSLKQHIR--YT----EH-----TKVCPVCKKEFTST 113 (129)
T ss_dssp SEECTTTCCEESSHHHHHHHHH--HT----CC-----CCBCTTTCCBCSSH
T ss_pred CeECCCCCcccCCHhHHHHHHH--HC----CC-----CCCCCCCCcccCCH
Confidence 3689999999999999999987 36 21 38999999975433
No 92
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=77.68 E-value=1.5 Score=37.33 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=23.9
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhh---------hhcccccCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAV---------LNLVCATCGKP 51 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v---------~~~~C~~Cg~~ 51 (367)
-+.+|.+||....+.. -+..+.+..+.. ..+.||.||++
T Consensus 69 ~~~~C~~CG~~~~~~~---------~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKE---------VKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CEEEETTTCCEEEGGG---------CTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CcEECCCCCCEEeccc---------ccccccccccccccccccccccCCcCccccCC
Confidence 4689999999886522 112333332111 14789999986
No 93
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=76.11 E-value=3.2 Score=27.22 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=30.3
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~ 50 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.||+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C~k 48 (48)
T 2epr_A 11 KQVACEICGKIFRDVYHLNRHKL--SHSG--E-----KPYSSGPSSG 48 (48)
T ss_dssp CSEEETTTTEEESSHHHHHHHGG--GSCS--C-----CCCCSCCCCC
T ss_pred cCeeCCCCCcccCCHHHHHHHHH--hcCC--C-----CCccCCCCCC
Confidence 35789999999999999999976 5642 2 2489999986
No 94
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.11 E-value=1.3 Score=31.39 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=28.8
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccc-cCCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA-TCGKPC 52 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~-~Cg~~~ 52 (367)
..+|..||..+. ...-+.|...+| + .-|.|+ .||+.|
T Consensus 10 ~~~C~~C~k~f~-~~~L~~H~~~~~-----~-----~p~~C~~~C~k~f 47 (66)
T 2eod_A 10 TQPCTYCTKEFV-FDTIQSHQYQCP-----R-----LPVACPNQCGVGT 47 (66)
T ss_dssp EEECSSSCCEEE-HHHHHHHHHHCS-----S-----SEEECTTCCSCCE
T ss_pred CeeccccCCccC-HHHHHHHHHHcC-----C-----cCccCCcccCccc
Confidence 478999999999 888889987321 2 238999 999864
No 95
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=75.80 E-value=0.86 Score=37.31 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.1
Q ss_pred ecCCCcccc---c-chHHHHHHHhhhccCC---CCcchhhhhhcccccCCC
Q 017706 7 KCGDCGALL---R-SVQEAQEHAELTSHSN---FSESTEAVLNLVCATCGK 50 (367)
Q Consensus 7 ~C~~C~~v~---~-g~~~aq~h~~~tgh~~---F~e~~e~v~~~~C~~Cg~ 50 (367)
-|..||.|+ . ++.-|..|.++|||.- |.-. .....|=.|+.
T Consensus 36 lCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~---~~~vwcY~cd~ 83 (102)
T 2ida_A 36 ICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPP---EGWGWCYVDEV 83 (102)
T ss_dssp EESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSC---SCEEEETTTTE
T ss_pred eeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecC---CCCEEEcCCCc
Confidence 488999987 3 5677999999999983 3221 23367777764
No 96
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=74.08 E-value=2.8 Score=26.92 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=29.1
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCG 49 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg 49 (367)
-..+|..||..+.....-+.|.. .|.. ...|.|+.||
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~--~H~~-------~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYHVR--SHDG-------SVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHHHH--HHSC-------CCCCCCCCCC
T ss_pred CCCcCCCCCcccCCHHHHHHHHH--HccC-------CCCCCCcCCC
Confidence 35689999999999999999986 4653 2248999997
No 97
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=74.06 E-value=3.7 Score=33.45 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.7
Q ss_pred cccCHHHHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 017706 111 PEVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWV 150 (367)
Q Consensus 111 ~~~d~~~l~~L~-~MGF~~~~a~kAL~~tgn~~~E~A~~Wl 150 (367)
..++++-++.++ .+|.|+..|.+||..++| |+-.|+-||
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~g-Div~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGG-DLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 568888888887 589999999999999988 888888765
No 98
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=73.73 E-value=0.8 Score=33.10 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=11.0
Q ss_pred ecCCCcccccchHHHHHHHh
Q 017706 7 KCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 7 ~C~~C~~v~~g~~~aq~h~~ 26 (367)
+|..||..+.....-..|..
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~ 22 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLL 22 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHH
T ss_pred cCCCCcccccCchhHHHHHH
Confidence 45555555555555555554
No 99
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=73.67 E-value=1.8 Score=35.41 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=36.7
Q ss_pred CceeecCCCcccccchHHHHHHHhhhccCCCCcch-hhhhhcccccCCCCCCCccccccc
Q 017706 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 3 ~~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~-e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
.+...|..||..+.....-+.|.. +-|..=.... ..-.-|.|+.|++.|.+......|
T Consensus 23 ~~~~~C~~C~~~f~~~~~L~~H~~-~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H 81 (155)
T 2rpc_A 23 QLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81 (155)
T ss_dssp CCSSSCCCCCCCBSSHHHHHHHHH-TTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHH
T ss_pred hcccccccCCcccCCHHHHHHHHH-hhcCCCcccCCccccccCCCCcccccCCHHHHHHH
Confidence 456789999999999999999987 4454321110 000126888898876444433333
No 100
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=72.97 E-value=2 Score=32.70 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=15.2
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..|+..+.....-..|..
T Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~ 38 (106)
T 2ee8_A 17 EFICKFCGRHFTKSYNLLIHER 38 (106)
T ss_dssp CCBCSSSCCBCSSHHHHHHHHH
T ss_pred CeECCCCCCccCCHHHHHHHHH
Confidence 3567777777777777677765
No 101
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=72.84 E-value=1.7 Score=32.43 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=13.5
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..|+..+.....-+.|..
T Consensus 8 ~~~C~~C~~~f~~~~~l~~H~~ 29 (96)
T 2dmd_A 8 PHKCEVCGKCFSRKDKLKTHMR 29 (96)
T ss_dssp CCCBTTTTBCCCCHHHHHHHGG
T ss_pred CeECCCCCCccCCHHHHHHHHH
Confidence 3456666666666666666655
No 102
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=72.60 E-value=6.8 Score=28.88 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 113 VDKELLKELEAMGFPVARATRALHYS 138 (367)
Q Consensus 113 ~d~~~l~~L~~MGF~~~~a~kAL~~t 138 (367)
+..++++.|+++||++..|.+|+...
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44689999999999999999998764
No 103
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=72.50 E-value=0.87 Score=33.96 Aligned_cols=47 Identities=21% Similarity=0.497 Sum_probs=34.0
Q ss_pred eecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccccc
Q 017706 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
.+|..||..+.....-+.|.. .|.. + ..|.|+.||+.|.+......|
T Consensus 4 ~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C~k~f~~~~~L~~H 50 (88)
T 1llm_C 4 FQCRICMRNFSRSDHLTTHIR--THTG--E-----KPFACDICGRKFARSDERKRH 50 (88)
T ss_dssp EECTTTCCEESCHHHHHHHHH--HHHC--C-----CCEECTTTCCEESSHHHHHHH
T ss_pred CcCCCCCCccCCHHHHHHHHH--HcCC--C-----CCccCCCCCCccCCHHHHHHH
Confidence 589999999999999999987 3532 1 238999999875444333333
No 104
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=72.32 E-value=6.5 Score=31.92 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH----hCC--CCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 017706 116 ELLKELEAMGFPVARATRALHY----SGN--ANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQ 188 (367)
Q Consensus 116 ~~l~~L~~MGF~~~~a~kAL~~----tgn--~~~E~A~~Wl~~h~dd~d~dep~~~~~~~~~~~~k~~lT~EEk~~k~~ 188 (367)
..+...++|||+......++.. ||. .+++.-+.=|+...++. ..+.. +. .+ ...++++||...+++
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~~--~~~~~-~~-~s---~~~~~s~eEqLrrLq 100 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDS--MQDES-SQ-TS---LQKEISTEEQLRRLQ 100 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSC--CCCCS-SC-CC---CCCCCCHHHHGGGTC
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhh--ccccc-cc-cc---ccCCCCHHHHHHHHH
Confidence 3578889999999998877554 554 57888888888766653 22211 11 11 234778877655443
No 105
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=72.10 E-value=3.1 Score=37.77 Aligned_cols=37 Identities=35% Similarity=0.435 Sum_probs=31.1
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (367)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (367)
.+|..|-+ -|.+---|++||..++| |++.|++||-..
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~G-D~ekAie~LR~k 42 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGW-DEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHc
Confidence 45666764 48889999999999998 999999999753
No 106
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=71.92 E-value=1.4 Score=32.82 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=34.2
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccc
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTE 57 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e 57 (367)
...+|..|+..+.....-+.|.. .|..-. ...|.|+.|++.|.+...
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~~-----~~~~~C~~C~~~f~~~~~ 80 (95)
T 2yt9_A 34 KPYSCPVCGLRFKRKDRMSYHVR--SHDGSV-----GKPYICQSCGKGFSRPDH 80 (95)
T ss_dssp CSEECSSSCCEESCHHHHHHHHH--HHCCCC-----CSSBCCSSSCCCBSSHHH
T ss_pred CCCcCCCCCCccCCHHHHHHHHH--HhcCCC-----CCceECCCccchhCCHHH
Confidence 35789999999999999999987 343211 134899999997544433
No 107
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.71 E-value=2 Score=32.05 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=32.6
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcch-hhhhhcccccCCCCCCCc
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRSK 55 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~-e~v~~~~C~~Cg~~~~~~ 55 (367)
.-.|..||..+.....-..|.. +-|..-.... -.-.-|.|+.||+.|.+.
T Consensus 25 ~~~C~~C~k~f~~~~~L~~H~~-~~H~~~~~~~~~~c~~~~C~~C~k~f~~~ 75 (95)
T 2ej4_A 25 SRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKAK 75 (95)
T ss_dssp SSSCCCCCCCCSSHHHHHHHHH-HTTTCCTTCSCCCCCCTTCSSTTCCCSSH
T ss_pred CCcccccccccCCHHHHHHHHH-HhccCCCCCCccceeccCCCCCCcccCCH
Confidence 3469999999999999999987 3365321100 000017999999976443
No 108
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=71.64 E-value=1.4 Score=32.38 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=6.0
Q ss_pred cccccCCCCC
Q 017706 43 LVCATCGKPC 52 (367)
Q Consensus 43 ~~C~~Cg~~~ 52 (367)
|.|+.||+.|
T Consensus 63 ~~C~~C~~~f 72 (90)
T 1a1h_A 63 FACDICGRKF 72 (90)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCchh
Confidence 5666666643
No 109
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=71.32 E-value=1.6 Score=33.97 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=25.9
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccccc
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
..+|..||..+.....-+.|.. -|.. ...|.|+.|++.|.+......|
T Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~~~l~~H 54 (124)
T 2dlq_A 7 GVECPTCHKKFLSKYYLKVHNR--KHTG-------EKPFECPKCGKCYFRKENLLEH 54 (124)
T ss_dssp SCCCTTTCCCCSSHHHHHHHHH--HHSS-------CCSCBCTTTCCBCSSHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHH--hCCC-------CCCeECCCCCchhcCHHHHHHH
Confidence 4567777777777666666665 2321 0125555555555444444333
No 110
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=71.01 E-value=2.8 Score=38.34 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=25.8
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGN 140 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn 140 (367)
..|.+.++.|.+|||+.+.+..||...|.
T Consensus 167 g~~~~~v~~~~~mg~~~~~~~~al~~~~~ 195 (215)
T 1tte_A 167 GIDHDLIDEFESQGFEKDKIVEVLRRLGV 195 (215)
T ss_dssp CCSHHHHHHHHHHTCCHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 45789999999999999999999988764
No 111
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=71.01 E-value=2.2 Score=32.81 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=32.6
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccccc
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
..+|..|+..+.....-+.|.. + |. ..|.|+.||+.|.+......|
T Consensus 16 ~~~C~~C~~~f~~~~~l~~H~~-~-H~---------~~~~C~~C~~~f~~~~~l~~H 61 (107)
T 1wjp_A 16 VYQCRLCNAKLSSLLEQGSHER-L-CR---------NAAVCPYCSLRFFSPELKQEH 61 (107)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHH-H-HH---------HSBCCTTTCCCBSSHHHHHHH
T ss_pred CeECCCCCCccCCHHHHHHHHH-H-CC---------CCccCCCCCCccCCHHHHHHH
Confidence 4689999999999888888887 2 51 248888888876444333333
No 112
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=70.95 E-value=1.5 Score=32.77 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=34.1
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccc
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETD 59 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~ 59 (367)
..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.|.+.....
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~~~l~ 81 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLR--IHSD-------ERPFKCQICPYASRNSSQLT 81 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHH--HSCC-------CCCEECSSSSCEESSHHHHH
T ss_pred CEeCCCCCCccCCHHHHHHHHH--HhCC-------CCCccCCCCCCccCCHHHHH
Confidence 4789999999999999999987 3532 12389999998754443333
No 113
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=70.41 E-value=1.3 Score=34.20 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=13.7
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
...| .|+..+.....-+.|..
T Consensus 10 ~~~C-~C~~~f~~~~~l~~H~~ 30 (110)
T 2csh_A 10 LYPC-QCGKSFTHKSQRDRHMS 30 (110)
T ss_dssp CEEC-TTSCEESSHHHHHHHHH
T ss_pred CEec-cCCCccCCHHHHHHHHH
Confidence 3566 67777766666666665
No 114
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=68.46 E-value=3.1 Score=31.63 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=35.6
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccccc
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
-..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.|.+......|
T Consensus 44 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~~~L~~H 92 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDHLRDHRY--IHSK-------EKPFKCQECGKGFCQSRTLAVH 92 (106)
T ss_dssp CCCBCSSSCCBCSCHHHHHHHGG--GSCC-------CCTTSCSSSCCCCSSHHHHHHH
T ss_pred CCcCCCCccchhCCHHHHHHHHH--HhCC-------CCCeECCCcCCcccCHHHHHHH
Confidence 34689999999999999999976 4532 1238999999976554444333
No 115
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=68.15 E-value=14 Score=27.25 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhH
Q 017706 223 AKRIEEENERKRILALRKAEKEEE-KRAREKIRQKL 257 (367)
Q Consensus 223 ~k~~~ee~e~k~~~e~rrrEK~ee-~~ar~rir~qI 257 (367)
.|...+-++..+.++.+|++|-.. ...|+++|+.|
T Consensus 11 ~kke~E~~eAlrq~Ee~Rk~Kh~kME~ERE~mRQ~I 46 (63)
T 3rk3_E 11 AKKFEEAQEALRQAEEERKAKYAKMEAEREAVRQGI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777777554 45688999999
No 116
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=67.07 E-value=1.9 Score=33.26 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=33.6
Q ss_pred eecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccccc
Q 017706 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
.+|..|+..+.....-+.|. + |.. ..-|.|+.|++.|.+......|
T Consensus 43 ~~C~~C~~~f~~~~~l~~H~--~-H~~-------~~~~~C~~C~~~f~~~~~L~~H 88 (107)
T 1wjp_A 43 AVCPYCSLRFFSPELKQEHE--S-KCE-------YKKLTCLECMRTFKSSFSIWRH 88 (107)
T ss_dssp BCCTTTCCCBSSHHHHHHHH--H-HCS-------TGGGEEGGGTEECSSHHHHHHH
T ss_pred ccCCCCCCccCCHHHHHHHH--H-cCC-------CCCccCccccchhCCHHHHHHH
Confidence 58999999999999999997 3 652 1348999999875444333333
No 117
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=65.48 E-value=5.3 Score=27.96 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=24.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
-..+|..||..+.....-+ .-|.. ...|.|+.||+.|
T Consensus 13 k~~~C~~C~k~F~~~~~l~-----~~H~~-------~k~~~C~~C~k~f 49 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQ-----LFDPM-------TGTFRCTFCHTEV 49 (62)
T ss_dssp SEEECSSSCCEEEHHHHHH-----HEETT-------TTEEBCSSSCCBC
T ss_pred CCccCCCCCchhccHHHhH-----hhcCC-------CCCEECCCCCCcc
Confidence 4578999999996543222 34432 1249999999875
No 118
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.77 E-value=2.9 Score=32.11 Aligned_cols=41 Identities=22% Similarity=0.497 Sum_probs=31.9
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~ 53 (367)
-..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.|.
T Consensus 36 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~ 76 (110)
T 2csh_A 36 RPYGCGVCGKKFKMKHHLVGHMK--IHTG-------IKPYECNICAKRFM 76 (110)
T ss_dssp CSEECTTTSCEESSSHHHHHHHT--TTCC-------CCCEECSSSCCEES
T ss_pred cCccCCCCCcccCCHHHHHHHHH--HcCC-------CCCeeCCCCcchhc
Confidence 34789999999999999999976 4532 12489999998643
No 119
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=63.75 E-value=3.5 Score=32.23 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=32.3
Q ss_pred CCceeecC--CCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCcccc
Q 017706 2 AGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET 58 (367)
Q Consensus 2 ~~~~l~C~--~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~ 58 (367)
..-..+|. .||..+.....-+.|.. .| ++ ..|.|+.||+.|.+....
T Consensus 2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~--~h---~~-----~~~~C~~C~~~f~~~~~l 50 (124)
T 1ubd_C 2 EPRTIACPHKGCTKMFRDNSAMRKHLH--TH---GP-----RVHVCAECGKAFVESSKL 50 (124)
T ss_dssp ---CEECCSTTCCCEESSHHHHHHHHG--GG---SC-----CCEECTTTCCEESSHHHH
T ss_pred CCCcccCCCCCCcCccCCHHHHHHHHH--Hc---CC-----CCeECCCCCchhCCHHHH
Confidence 34467898 89999999999999986 45 22 238899999865444333
No 120
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=63.32 E-value=3.2 Score=34.15 Aligned_cols=27 Identities=33% Similarity=0.871 Sum_probs=19.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhc-ccccCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNL-VCATCGKP 51 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~-~C~~Cg~~ 51 (367)
...+|.+||..+... ...+ .||.||.+
T Consensus 72 ~~~~C~~CG~~~e~~---------------------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN---------------------ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC---------------------CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC---------------------CCCCCcCccccCC
Confidence 367899999887551 1236 89999986
No 121
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=62.82 E-value=3.9 Score=31.65 Aligned_cols=51 Identities=27% Similarity=0.519 Sum_probs=35.5
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccccc
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
..+|..|+..+.....-..|.. +-|..-++ ..|.|+.||+.|.+......|
T Consensus 35 ~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~-----~~~~C~~C~~~f~~~~~l~~H 85 (124)
T 2dlq_A 35 PFECPKCGKCYFRKENLLEHEA-RNCMNRSE-----QVFTCSVCQETFRRRMELRLH 85 (124)
T ss_dssp SCBCTTTCCBCSSHHHHHHHHH-HCCCCSCC-----CCEECSSSCCEESSHHHHHHH
T ss_pred CeECCCCCchhcCHHHHHHHHh-hhhcCCCC-----CCeECCCCCCccCCHHHHHHH
Confidence 4689999999999999999987 32222222 248999999975444433333
No 122
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=62.13 E-value=2.5 Score=30.31 Aligned_cols=41 Identities=22% Similarity=0.500 Sum_probs=31.5
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~ 54 (367)
..+|..|+..+.....-+.|.. .|.. ...|.|+.||+.|.+
T Consensus 29 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~ 69 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDMKKHTF--IHTG-------EKPHKCQVCGKAFSQ 69 (82)
T ss_dssp CEECSSSCCEESSHHHHHHHHH--HHHT-------CCCEECTTTSCEESS
T ss_pred CeeCCcCChhhCCHHHHHHHHH--HhcC-------CCCCcCCCcchhhCC
Confidence 4789999999999999999986 3421 124899999986533
No 123
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=61.85 E-value=2.6 Score=34.61 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=31.4
Q ss_pred ecCCCcccccc---hHHHHHHHhhhccCCCCcchhhhhhcccccCCC
Q 017706 7 KCGDCGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (367)
Q Consensus 7 ~C~~C~~v~~g---~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~ 50 (367)
-|..||.|+=| +.-|..|.++|||..+-.... ....|=.|+.
T Consensus 38 ~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~--~~vwCy~cd~ 82 (109)
T 3c5k_A 38 VCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYID--LSAWCYYCQA 82 (109)
T ss_dssp EETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTT--CCEEETTTTE
T ss_pred eeeecCccccCCCcChHHHHHhcccCCCEEEECCC--CCEEECCCCC
Confidence 38889999844 566999999999998876521 1367777764
No 124
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=60.01 E-value=2 Score=35.63 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=25.7
Q ss_pred eecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
-+|..||..+.....=+.|.. .|.. + ..|.|+.||+.|
T Consensus 23 y~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C~k~F 60 (133)
T 2lt7_A 23 YICIVCKRSYVCLTSLRRHFN--IHSW--E-----KKYPCRYCEKVF 60 (133)
T ss_dssp EEETTTCCEESCHHHHHHHHH--HHHC--C-----SCEECSSSSCEE
T ss_pred eECCCCCCCcCCHHHHHHHHH--HcCC--C-----CCeeCCccCeec
Confidence 478888888888888888875 4532 1 236677777654
No 125
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=58.33 E-value=2 Score=35.76 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=42.3
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCC-------------------CC-----cchhhhhhcccccCCCCCCCcccccc
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSN-------------------FS-----ESTEAVLNLVCATCGKPCRSKTETDL 60 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~-------------------F~-----e~~e~v~~~~C~~Cg~~~~~~~e~~~ 60 (367)
.+.|..|+..+.+...++.|-.-.-|.. |. ........|+|..|+..|.|......
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~ 111 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAES 111 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHHH
Confidence 3689999999999999998885322311 00 01122446899999998877776666
Q ss_pred ccccccc
Q 017706 61 HRKRTGH 67 (367)
Q Consensus 61 a~K~t~f 67 (367)
|...-.|
T Consensus 112 H~~gk~H 118 (127)
T 1zu1_A 112 HYIGKTH 118 (127)
T ss_dssp HHTSHHH
T ss_pred HHCCHHH
Confidence 6655444
No 126
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=54.66 E-value=11 Score=26.77 Aligned_cols=50 Identities=26% Similarity=0.512 Sum_probs=29.7
Q ss_pred eecCC--CcccccchHHHHHHHhhhccCCCCcchhhhhhccccc--CCCCCCCccccccccc
Q 017706 6 LKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHRK 63 (367)
Q Consensus 6 l~C~~--C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~--Cg~~~~~~~e~~~a~K 63 (367)
..|.. |+..+.....-+.|.. +.|.. ...|.|+. ||+.|.+......|.+
T Consensus 8 ~~C~~~~C~~~f~~~~~L~~H~~-~~H~~-------~~~~~C~~~~C~k~f~~~~~L~~H~~ 61 (79)
T 2dlk_A 8 MPCDFPGCGRIFSNRQYLNHHKK-YQHIH-------QKSFSCPEPACGKSFNFKKHLKEHMK 61 (79)
T ss_dssp EECSSTTTCCEESSHHHHHHHHH-HGGGS-------CCCEECSCTTTCCEESSHHHHHHHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHH-HHhCC-------CCCeECCCCCCcCccCCHHHHHHHHH
Confidence 45554 8888877777777776 33432 12267766 7776655554444443
No 127
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=53.87 E-value=5.7 Score=28.06 Aligned_cols=41 Identities=17% Similarity=0.394 Sum_probs=30.9
Q ss_pred ceeecC--CCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCC
Q 017706 4 VSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (367)
Q Consensus 4 ~~l~C~--~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~ 53 (367)
-..+|. .||..+.....-+.|.. .|.. ...|.|+.||+.|.
T Consensus 18 ~~~~C~~~~C~k~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSDELTRHIR--IHTG-------QKPFQCRICMRNFS 60 (73)
T ss_dssp CCEECSSTTBCCEESSHHHHHHHHH--HHHC-------CCCEECTTTCCEES
T ss_pred CccCCcCCCCCCccCCHHHHHHHHH--hhCC-------CCCeECCCCCchhC
Confidence 347897 69999999999999976 3432 12389999998653
No 128
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=53.61 E-value=4.2 Score=31.30 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=12.7
Q ss_pred eecC--CCcccccchHHHHHHHh
Q 017706 6 LKCG--DCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~--~C~~v~~g~~~aq~h~~ 26 (367)
.+|. .||..+.....-..|..
T Consensus 37 ~~C~~~~C~~~f~~~~~l~~H~~ 59 (119)
T 2jp9_A 37 YQCDFKDCERRFSRSDQLKRHQR 59 (119)
T ss_dssp EECCSTTCCCEESSHHHHHHHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHH
Confidence 4566 56666666666666654
No 129
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=53.49 E-value=3.5 Score=34.03 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=29.4
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCc
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~ 55 (367)
..+|..||..+.....-..|.. -|.. ..-|.|+.||+.|.+.
T Consensus 50 ~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~C~k~F~~~ 91 (133)
T 2lt7_A 50 KYPCRYCEKVFPLAEYRTKHEI--HHTG-------ERRYQCLACGKSFINY 91 (133)
T ss_dssp CEECSSSSCEESSHHHHHHHHH--HHHT-------CCCEEESSSCCEESSH
T ss_pred CeeCCccCeecccccchhhhcc--ccCC-------CccccCCCCCCCcCCH
Confidence 4578999999888888888865 3532 1237888888865333
No 130
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=53.39 E-value=16 Score=23.13 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=26.5
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2ema_A 11 KRYKCNECGKVFSRNSQLSQHQK--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHT--GGGC--C-----CCCSSSCC
T ss_pred cCcCCCCCcchhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 45689999999998888888876 4642 1 23788876
No 131
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=52.89 E-value=15 Score=23.42 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=26.4
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2el6_A 11 NPYKCSQCEKSFSGKLRLLVHQR--MHTR--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHHG--GGCC--S-----SCCSCCCC
T ss_pred CCeECCCCCcccCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888865 4653 1 23788776
No 132
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=57.39 E-value=3 Score=23.19 Aligned_cols=10 Identities=50% Similarity=1.142 Sum_probs=7.7
Q ss_pred cccccCCCCC
Q 017706 43 LVCATCGKPC 52 (367)
Q Consensus 43 ~~C~~Cg~~~ 52 (367)
|.|+.||+.|
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 6788888764
No 133
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.40 E-value=16 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=25.3
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQLIVHQR--IHTG--E-----NPSGPSSG 46 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHT--TTTT--S-----CCSCCCCC
T ss_pred CCeeCCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34678889999888888888865 4642 1 23778776
No 134
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=51.35 E-value=11 Score=28.72 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=7.1
Q ss_pred ceeecCCCcccc
Q 017706 4 VSLKCGDCGALL 15 (367)
Q Consensus 4 ~~l~C~~C~~v~ 15 (367)
+.-.|..||..+
T Consensus 27 v~Y~C~~CG~~~ 38 (70)
T 1twf_L 27 LKYICAECSSKL 38 (70)
T ss_dssp CCEECSSSCCEE
T ss_pred EEEECCCCCCcc
Confidence 445666666654
No 135
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=51.19 E-value=19 Score=22.71 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=26.3
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2el4_A 11 KPYGCSQCAKTFSLKSQLIVHQR--SHTG--V-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHGG--GSSS--C-----CCSCCTTC
T ss_pred CceECCCCCchhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888875 4642 1 23788776
No 136
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=50.37 E-value=5.4 Score=39.43 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=33.1
Q ss_pred eecCCCcccccc-hHHHHHHHhhhccCCCCcchhhhhhcccccCCC
Q 017706 6 LKCGDCGALLRS-VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (367)
Q Consensus 6 l~C~~C~~v~~g-~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~ 50 (367)
--|..||.++-| ..-|..|...|||..|-... ....+|-.|+.
T Consensus 63 ~~cl~cg~~~c~~~~h~~~H~~~~~h~~~~~~~--~~~~~c~~~~~ 106 (476)
T 3mhs_A 63 FMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSN--NGLLFCFKCED 106 (476)
T ss_dssp EEESSSSCEEETTTTHHHHHHHHHCCCEEEETT--TCCEEETTTTE
T ss_pred eEeCCCCCCccCCchHHHHHhcccCCcEEEECC--CCcEEeCCCCC
Confidence 358889988865 45699999999998886552 23579999985
No 137
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=50.30 E-value=5.4 Score=33.73 Aligned_cols=21 Identities=19% Similarity=0.608 Sum_probs=13.0
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..|..||..+.....-..|..
T Consensus 106 ~~C~~C~~~f~~~~~l~~H~~ 126 (190)
T 2i13_A 106 YACPECGKSFSQLAHLRAHQR 126 (190)
T ss_dssp EECTTTCCEESSHHHHHHHHH
T ss_pred CcCCCCCCccCCHHHHHHHHH
Confidence 456666666666666666654
No 138
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.24 E-value=18 Score=22.90 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=26.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2emy_A 11 NPYECHECGKAFSRKYQLISHQR--THAG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH--HHTT--S-----CCSCSSCC
T ss_pred cCcCCCCCCcccCcHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 45789999999998888888876 3642 1 23788877
No 139
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=50.22 E-value=19 Score=25.42 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhH
Q 017706 226 IEEENERKRILALRKAEKEEE-KRAREKIRQKL 257 (367)
Q Consensus 226 ~~ee~e~k~~~e~rrrEK~ee-~~ar~rir~qI 257 (367)
..+-.+..+.++++|++|-.. ...|+++|+.|
T Consensus 11 e~E~~eAlreaEe~Rk~Kh~kmE~eRE~mRq~I 43 (49)
T 1kil_E 11 EEERQEALRQAEEERKAKYAKMEAEREVMRQGI 43 (49)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777776444 45688889888
No 140
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=50.13 E-value=18 Score=22.87 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=24.3
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2em0_A 12 TWKCRECDMCFSQASSLRLHQN--VHVGE-------KPSGPSSG 46 (46)
T ss_dssp CCCCSSSCCCCSSHHHHHHHGG--GGSSS-------SCSCSSCC
T ss_pred CeECCCCCcccCCHHHHHHHHH--HcCCC-------CCcCCCCC
Confidence 4578888888888888888865 36421 23677766
No 141
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.05 E-value=21 Score=22.52 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=26.6
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2ep2_A 11 KPYECSICGKSFTKKSQLHVHQQ--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--TTSS--C-----CSCCSCCC
T ss_pred cCcCCCCCCcccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999999888888876 5642 1 23788776
No 142
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.02 E-value=18 Score=22.88 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=26.3
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIMHQR--THVD--D-----KHSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHHHH--HCCS--C-----CCSCCCCC
T ss_pred CCeeCCCCCCccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888876 3642 1 23788776
No 143
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.85 E-value=22 Score=22.45 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=26.3
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eml_A 11 KPYECSVCGKAFSHRQSLSVHQR--IHSG--K-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHG--GGSS--C-----CCSCSSCC
T ss_pred CCeeCCCcCCccCCHHHHHHHHH--HhcC--C-----CCCCCCCC
Confidence 34689999999998888888876 4643 1 23788776
No 144
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=49.45 E-value=4.7 Score=28.95 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=13.0
Q ss_pred ec--CCCcccccchHHHHHHHh
Q 017706 7 KC--GDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 7 ~C--~~C~~v~~g~~~aq~h~~ 26 (367)
+| ..||..+.....-+.|..
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~ 24 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQF 24 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHH
Confidence 56 667777766666666654
No 145
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.41 E-value=21 Score=22.56 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=26.8
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2ep0_A 11 KPYKCDVCHKSFRYGSSLTVHQR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHT--TTSSS-------CCCSCCCC
T ss_pred CCeeCcccCcccCChHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999999888889965 56531 23788776
No 146
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=54.56 E-value=3.6 Score=23.35 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=8.8
Q ss_pred cccccCCCCCCC
Q 017706 43 LVCATCGKPCRS 54 (367)
Q Consensus 43 ~~C~~Cg~~~~~ 54 (367)
|.|+.||+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 788889886533
No 147
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=48.60 E-value=4.9 Score=22.33 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=8.1
Q ss_pred cccccCCCCC
Q 017706 43 LVCATCGKPC 52 (367)
Q Consensus 43 ~~C~~Cg~~~ 52 (367)
|.|+.||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 7899998865
No 148
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=48.56 E-value=11 Score=27.98 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=12.3
Q ss_pred eecCC--CcccccchHHHHHHHh
Q 017706 6 LKCGD--CGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~--C~~v~~g~~~aq~h~~ 26 (367)
..|.. ||..+.....-+.|..
T Consensus 16 ~~C~~~~C~~~f~~~~~l~~H~~ 38 (100)
T 2ebt_A 16 HYCDYPGCTKVYTKSSHLKAHLR 38 (100)
T ss_dssp EECCSSSCCCEESCHHHHHHHHH
T ss_pred eEcCCCCCCCcccCHHHHHHHHH
Confidence 44553 6666666666666654
No 149
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.37 E-value=19 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=26.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eoe_A 11 KPYKCNECGKVFTQNSHLANHQR--IHTG--V-----KPSGPSSG 46 (46)
T ss_dssp CSSEETTTTEECSSHHHHHHHHG--GGSC--C-----CSCSSCCC
T ss_pred CCeECCCcChhhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999999988888976 4642 1 23788877
No 150
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=53.94 E-value=3.8 Score=23.24 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=9.4
Q ss_pred hcccccCCCCCCC
Q 017706 42 NLVCATCGKPCRS 54 (367)
Q Consensus 42 ~~~C~~Cg~~~~~ 54 (367)
-|.|+.||+.|.+
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 3789999886533
No 151
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.11 E-value=23 Score=22.41 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=25.8
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2emf_A 11 KHFECTECGKAFTRKSTLSMHQK--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESCHHHHHHHGG--GTSC--S-----SCSCCCCC
T ss_pred CCeECCCCCchhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888876 4542 1 23788776
No 152
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.09 E-value=22 Score=22.42 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=26.4
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2en8_A 11 KSHTCDECGKNFCYISALRIHQR--VHMG--E-----KCSGPSSG 46 (46)
T ss_dssp SSEECTTTCCEESSHHHHHHHHT--TTCC--S-----CSSCCSCC
T ss_pred CCeECCCcCcccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888875 5642 1 23788877
No 153
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.98 E-value=20 Score=22.64 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=26.6
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~c 46 (46)
T 2ytk_A 11 KPYKCNECGKVFTQNSHLTNHWR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHSS--S-----SCSSCCCC
T ss_pred CCEeCCcCCCccCCHHHHHHHHH--HHCC--C-----CCCCCCCC
Confidence 34689999999999888888876 4542 1 23788877
No 154
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.29 E-value=24 Score=22.35 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=26.4
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2em5_A 11 KSHQCHECGRGFTLKSHLNQHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHT--TTSC--S-----CCSSCCCC
T ss_pred CCeECCcCCCccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999998888888875 4642 1 23788877
No 155
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.03 E-value=23 Score=22.37 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=26.2
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2em7_A 11 KPYKCEECGKGFICRRDLYTHHM--VHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESCHHHHHHHGG--GGTT--C-----CCSSTTCC
T ss_pred cCccCCCccchhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888865 4642 1 23788776
No 156
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.00 E-value=26 Score=22.00 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=26.4
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-..|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eme_A 11 KPYVCDYCGKAFGLSAELVRHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHG--GGCC--C-----SCCSSCCC
T ss_pred CCeECCCCChhhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 34689999999998888888875 4542 1 23788877
No 157
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=46.53 E-value=19 Score=22.80 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=25.1
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2emk_A 12 PYECKECGKAFSQTTHLIQHQR--VHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHH--HHSS--C-----CCSSCCCC
T ss_pred ceECCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 4678899999988888888876 4542 1 23778776
No 158
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.51 E-value=24 Score=22.30 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=26.2
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2eq0_A 11 KPYKCHECGKVFRRNSHLARHQL--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEECTTTCCEESSHHHHHHHHT--TTCC--C-----CCSCCSCC
T ss_pred CCeECCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888865 4642 1 23788776
No 159
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=46.47 E-value=25 Score=22.13 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.9
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2em9_A 11 KPYNCKECGKSFRWASCLLKHQR--VHSG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHGG--GGTS--C-----CCCSTTCC
T ss_pred cCeECCccccccCChHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888865 4642 1 23788776
No 160
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=46.46 E-value=1.4e+02 Score=28.39 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNAN----VEAAVNWVVE 152 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~----~E~A~~Wl~~ 152 (367)
-+.+++...|..+|||-...+.+|.+.|... +=.|+.||.+
T Consensus 68 k~eeev~~~lK~L~YP~~isKS~L~a~g~pHsWp~~Lg~L~WLve 112 (315)
T 2ve7_A 68 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLID 112 (315)
T ss_dssp CHHHHHHHHHHHTTCSSCCCHHHHHTTTSTTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCceeCHHHhcCCCCCCcHHHHHHHHHHHHH
Confidence 4667889999999999998888998888743 7889999964
No 161
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=46.26 E-value=7.1 Score=31.19 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=32.0
Q ss_pred eecCC--Ccccccc---hHHHHHHHhhhccCCCCcchhhhhhcccccCCC
Q 017706 6 LKCGD--CGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (367)
Q Consensus 6 l~C~~--C~~v~~g---~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~ 50 (367)
--|.. ||.|+=| ..-|..|.++|||..+-... ..+.+|=.|+.
T Consensus 39 w~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~--~~~vwCy~cdd 86 (97)
T 2uzg_A 39 WACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLT--TLRVWCYACSK 86 (97)
T ss_dssp EEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETT--TTEEEETTTTE
T ss_pred eeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECC--CCCEEECCCCc
Confidence 36888 8888743 45699999999999887752 22578877864
No 162
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.05 E-value=22 Score=22.43 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=26.6
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2emm_A 11 RPHKCNECGKSFIQSAHLIQHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHSC--C-----CTTSSSCC
T ss_pred CCeeCCCCChhhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 35689999999999888888876 4642 1 23788877
No 163
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.89 E-value=25 Score=22.14 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=26.1
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2ene_A 11 KPYKCNECGKVFRHNSYLSRHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SSEECSSSCCEESSHHHHHHHHT--TTCC--C-----CCCSCCCC
T ss_pred CCeECCCCCchhCChHHHHHHHh--hcCC--C-----CCCCCCCC
Confidence 34689999999988888888876 4642 1 23788776
No 164
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.67 E-value=22 Score=22.45 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=24.5
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2ytn_A 12 PYKCNECGKVFTQNSHLARHRG--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHGG--GTSC--C-----CCCSCCCC
T ss_pred CeECCCCCCeeCCHHHHHHHhh--hcCC--C-----CCCCCCCC
Confidence 4578888888888888888865 4542 1 23777776
No 165
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.33 E-value=23 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=26.4
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2en1_A 11 KPFKCEECGKRFTQNSQLHSHQR--VHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEEETTTTEEESSHHHHHHHGG--GGSC--C-----CCSCCCCC
T ss_pred CCeeCCCCCcccCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999998888888875 4642 1 23788776
No 166
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.27 E-value=25 Score=22.15 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=26.1
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2ytj_A 11 KPYICAECGKAFTIRSNLIKHQK--IHTK--Q-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HTSC--C-----CCSSCSCC
T ss_pred cCeECCCCChhhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888876 4642 1 23778766
No 167
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.24 E-value=21 Score=22.48 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=24.7
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eov_A 12 PYKCSDCGKSFTWKSRLRIHQK--CHTG--E-----RHSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHHH--HHSC--C-----SSCCSCCC
T ss_pred CccCCccChhhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 4678889998888888888865 4542 1 23777776
No 168
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=45.08 E-value=7.1 Score=32.98 Aligned_cols=44 Identities=16% Similarity=-0.003 Sum_probs=30.3
Q ss_pred ecCCCcccc---c------chHHHHHHHhhhccCCCCcchh---hhhhcccccCCC
Q 017706 7 KCGDCGALL---R------SVQEAQEHAELTSHSNFSESTE---AVLNLVCATCGK 50 (367)
Q Consensus 7 ~C~~C~~v~---~------g~~~aq~h~~~tgh~~F~e~~e---~v~~~~C~~Cg~ 50 (367)
-|..||.|+ + |+.-|..|...|||..+-.... ..-+.+|=.|+.
T Consensus 48 lCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~~~~~vwcY~cd~ 103 (129)
T 2g45_A 48 LNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDD 103 (129)
T ss_dssp EETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTE
T ss_pred EeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCCCCCeEEECCCCC
Confidence 477788875 1 3677999999999987764311 114568878864
No 169
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.67 E-value=24 Score=22.34 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=24.9
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-..|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2ytq_A 12 PYGCSECGKAFSSKSYLIIHMR--THSG--E-----KPSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHT--TTCC--S-----CSSCCCCC
T ss_pred CcCCCccChhhCChHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 4678889998888888888865 4643 1 23777776
No 170
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=44.52 E-value=16 Score=20.19 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=17.9
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-+.|..
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMETHYR 24 (28)
T ss_dssp EECSSSCCEESCHHHHHHHHT
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 579999999988888888865
No 171
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.48 E-value=25 Score=21.94 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=26.6
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 44 (44)
T 2emx_A 9 KPFGCSCCEKAFSSKSYLLVHQQ--THAE--E-----KPSGPSSG 44 (44)
T ss_dssp CCEECSSSSCEESSHHHHHHHHH--HHTS--S-----CSCSCCCC
T ss_pred cCccCCCCCcccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 35789999999999888888876 3542 1 23788776
No 172
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.47 E-value=24 Score=22.27 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=26.5
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2ytd_A 11 KPYKCSECGKAFHRHTHLNEHRR--IHTG--Y-----RPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHTC--C-----CSSCSSCC
T ss_pred cCeECCCCCCeeCChHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999998888888865 4642 1 23788877
No 173
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.39 E-value=22 Score=22.41 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=26.9
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2en6_A 11 KPYGCNECGKTFSQKSILSAHQR--THTG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEEETTTTEEESSHHHHHHHHH--HHSS--C-----CCSSSCCC
T ss_pred cCeECCCCCcccCchHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999999988888976 3642 1 23788877
No 174
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.12 E-value=25 Score=22.21 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=26.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSKFNLDMHQK--VHTG--E-----RPSGPSSG 46 (46)
T ss_dssp CSEEETTTTEEESCHHHHHHHHT--TSCS--C-----CSSCCSCC
T ss_pred CCeECCCCCCccCCHHHHHHHHH--hhCC--C-----CCCCCCCC
Confidence 34689999999999888888876 4642 1 23788877
No 175
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.01 E-value=28 Score=21.93 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=26.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2enc_A 11 KPFKCEECGKGFYTNSQCYSHQR--SHSG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HSCC--S-----SCCSSCCC
T ss_pred CCcCCCCCCCcCCChHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999999888889976 4642 1 23788877
No 176
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.37 E-value=26 Score=22.19 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=23.7
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2elz_A 12 PYKCEDCGKGYNRRLNLDMHQR--VHMG--E-----KTSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHGG--GGGS--C-----CCCCSCCC
T ss_pred CeeCcccCchhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 4578888888888777777865 4542 1 23777766
No 177
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.28 E-value=24 Score=22.26 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=24.2
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSRLNRHSM--VHTA--E-----KPSGPSSG 46 (46)
T ss_dssp SCCCSSSCCCCSSHHHHHHHHH--HTTC--C-----CSSSCCCC
T ss_pred CcCCCcCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 4578888888888888888865 3532 1 23677766
No 178
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.12 E-value=21 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=26.2
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2em8_A 11 KPYKCVECGKGYKRRLDLDFHQR--VHTG--E-----KLSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHHC--C-----CCCCSCCC
T ss_pred CCeECcccCchhCCHHHHHHHHH--HHcC--C-----CCCCCCCC
Confidence 34689999999988888888876 4542 1 23788776
No 179
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.97 E-value=28 Score=21.91 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=23.1
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. +.|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~-~~H~~--~-----k~~~C~~C 47 (47)
T 2epx_A 12 PYECIECGKAFIQNTSLIRHWR-YYHTG--E-----KPSGPSSG 47 (47)
T ss_dssp SBCCSSSCCCBSSHHHHHHHHT-TTTTT--S-----CSSSCCCC
T ss_pred CEECCccCchhCChHHHHHHhH-hhcCC--C-----CCCCCCCC
Confidence 4578888888887777777765 23431 1 23677766
No 180
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=42.89 E-value=12 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=12.4
Q ss_pred eecCC--CcccccchHHHHHHHh
Q 017706 6 LKCGD--CGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~--C~~v~~g~~~aq~h~~ 26 (367)
..|.. ||..+.....-+.|..
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~ 28 (89)
T 2wbs_A 6 HTCDYAGCGKTYTKSSHLKAHLR 28 (89)
T ss_dssp EECCSTTTCCEESSHHHHHHHHT
T ss_pred eeCCCCCCCCcCCCHHHHHHHHH
Confidence 45655 6666666655556654
No 181
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.89 E-value=25 Score=22.08 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=25.5
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eq4_A 11 KLYNCKECGKSFSRAPCLLKHER--LHSG--E-----KPSGPSSG 46 (46)
T ss_dssp CCCCBTTTTBCCSCHHHHHHHHH--HCCS--S-----SCCCCCCC
T ss_pred CCeECCCCCCccCchHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 34678999999988888888875 3542 1 23778776
No 182
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=42.86 E-value=18 Score=19.66 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=16.7
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-..|..
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~ 22 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQR 22 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGG
T ss_pred ccCCCCCCcCCCHHHHHHHHH
Confidence 368899999888877777765
No 183
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=42.74 E-value=66 Score=22.93 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=34.8
Q ss_pred cccCHHHHHHHH--hCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 111 PEVDKELLKELE--AMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 111 ~~~d~~~l~~L~--~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
..+.++++.+.. =-|-|++...+-|..|+= ++..|+|-|++..|+
T Consensus 6 ~~vPe~li~q~q~VLqgksR~vIirELqrTnL-dVN~AvNNlLsRDd~ 52 (53)
T 2qho_B 6 SVIPEELISQAQVVLQGKSRSVIIRELQRTNL-DVNLAVNNLLSRDDE 52 (53)
T ss_dssp GGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTT-CHHHHHHHHHC----
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCc-cHHHHHHHHhccccC
Confidence 456778877664 579999999999999885 999999999986553
No 184
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.64 E-value=26 Score=22.06 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=23.6
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2epz_A 12 PFDCIDCGKAFSDHIGLNQHRR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHT--TTTT--C-----CCCSSCCC
T ss_pred CeECCCCCceeCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 4578888888888877778865 4542 1 23677766
No 185
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.89 E-value=27 Score=22.02 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=25.9
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-..|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2yso_A 11 KSHQCRECGEIFFQYVSLIEHQV--LHMG--Q-----KNSGPSSG 46 (46)
T ss_dssp CCEECTTTCCEESSHHHHHHHHH--HHSC--C-----SCCCTTCC
T ss_pred CCEEccccChhhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888876 3542 1 23788776
No 186
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=41.77 E-value=15 Score=32.24 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.5
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHhCCCCHHHHHHHHH
Q 017706 116 ELLKELEAMG-FPVARATRALHYSGNANVEAAVNWVV 151 (367)
Q Consensus 116 ~~l~~L~~MG-F~~~~a~kAL~~tgn~~~E~A~~Wl~ 151 (367)
.-+..|++.| |....|..||..+|+ +++.|+-=|-
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~G-dv~~Al~eLq 139 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGG-DVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTT-CHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 3378899999 567999999999998 9999998654
No 187
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.50 E-value=22 Score=22.45 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=25.8
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2emh_A 11 RPYICTVCGKAFTDRSNLIKHQK--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECTTTCCEESSHHHHHHHHH--HHHC--S-----SCSSSCCC
T ss_pred CCcCCCCCCchhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 35689999999988888888875 3532 1 23788776
No 188
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=41.23 E-value=6.5 Score=30.19 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=16.2
Q ss_pred eeecCC--CcccccchHHHHHHHh
Q 017706 5 SLKCGD--CGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~--C~~v~~g~~~aq~h~~ 26 (367)
...|.. ||..+.....-+.|..
T Consensus 6 ~~~C~~~~C~~~f~~~~~l~~H~~ 29 (119)
T 2jp9_A 6 PFMCAYPGCNKRYFKLSHLQMHSR 29 (119)
T ss_dssp CBCCCSTTSCCCBSCHHHHHHHHH
T ss_pred eeeCCCCCCcchhCCHHHHHHHHH
Confidence 456775 8888877777777766
No 189
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=41.17 E-value=18 Score=19.91 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=17.7
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-..|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKHLR 24 (27)
T ss_dssp CEECSSSSCEESSHHHHHHHHH
T ss_pred CccCCCcChhhCCHHHHHHHHH
Confidence 3579999999988887777764
No 190
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=41.08 E-value=8 Score=28.09 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHH
Q 017706 115 KELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVE 152 (367)
Q Consensus 115 ~~~l~~L~~MGF~---~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (367)
.+.+.+|.+| || .+..+-.|...++ +++.|+|-|++
T Consensus 13 ~~~~~~L~~M-FP~lD~evI~~Vl~a~~G-~~~~~IdaLLq 51 (54)
T 1p3q_Q 13 KDTLNTLQNM-FPDMDPSLIEDVCIAAAS-RIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHH-STTSCHHHHHHHHHHSCC---CGGGC----
T ss_pred HHHHHHHHHH-cccCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence 4678999999 65 5677777776665 88999888775
No 191
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.54 E-value=2.9 Score=29.25 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=24.3
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCccccccc
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~~~a 61 (367)
-...|..||..+..... +.. ...|.|+.||+.|.+......|
T Consensus 17 ~~~~C~~C~k~f~~~~~------------l~~----~~~~~C~~C~~~f~~~~~l~~H 58 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRST------------LSR----RKTPMCEKCRKDSCQEAALNKD 58 (73)
T ss_dssp SEEECSSSCCEEECCCC------------CCC----SSSCCCHHHHHTCSCCCSSCCC
T ss_pred CCeeCCcccchhCCHHH------------hCc----CCCCCCCCCChhhcCHHHHHHH
Confidence 34688889888743221 111 2348899998876544444444
No 192
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.36 E-value=24 Score=22.25 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=25.8
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2emp_A 11 KPYMCNECGKAFSVYSSLTTHQV--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESCHHHHHHHHH--HHHC--C-----SCCSCCCC
T ss_pred cCeECCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888876 3532 1 23778776
No 193
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=40.29 E-value=18 Score=30.49 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHhCC--CCHHHHHHHHHHhcCCC
Q 017706 124 MGFPVARATRALHYSGN--ANVEAAVNWVVEHENDP 157 (367)
Q Consensus 124 MGF~~~~a~kAL~~tgn--~~~E~A~~Wl~~h~dd~ 157 (367)
|+|+++.-..-|..-.+ .+++.+..|++.|....
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a 36 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDA 36 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGH
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhH
Confidence 89999998887766544 38999999999988653
No 194
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.21 E-value=24 Score=22.15 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=23.3
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2ytr_A 12 PYKCNECGKAFSQTSKLARHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp TTCCTTTCCCCSSHHHHHHHHT--TTTT--C-----SCCCSCCC
T ss_pred CcCCCCCCCccCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 3568888888888777778865 4542 1 23677766
No 195
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=40.18 E-value=8.3 Score=32.55 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=16.7
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 77 ~~~C~~C~~~f~~~~~l~~H~~ 98 (190)
T 2i13_A 77 PYKCPECGKSFSQRANLRAHQR 98 (190)
T ss_dssp CEECTTTCCEESCHHHHHHHHH
T ss_pred CccCcccCCccCCHHHHHHHHH
Confidence 4678888888877777777765
No 196
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=39.48 E-value=7.3 Score=28.35 Aligned_cols=45 Identities=13% Similarity=0.330 Sum_probs=32.7
Q ss_pred eeecC--CCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCCCCcccc
Q 017706 5 SLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET 58 (367)
Q Consensus 5 ~l~C~--~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~~~~~e~ 58 (367)
...|. .||..+.....-+.|.. .|.. ...|.|+.||+.|.+....
T Consensus 4 ~~~C~~~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~~~l 50 (90)
T 1a1h_A 4 PYACPVESCDRRFSQSGSLTRHIR--IHTG-------QKPFQCRICMRNFSRSDHL 50 (90)
T ss_dssp CEECCSSSCCCEESSHHHHHHHHH--HHHC-------CCCEECTTTCCEESCHHHH
T ss_pred ceECCCCCCCCccCCHHHHHHHHH--HhCC-------CCCccCCCCCcccCCHHHH
Confidence 46898 69999999999999987 3432 1248999999875444333
No 197
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=39.43 E-value=18 Score=19.91 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=17.8
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-..|..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~ 23 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKRHYR 23 (29)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH
T ss_pred eECCCCCcccCCHHHHHHHHH
Confidence 479999999988888888876
No 198
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=39.31 E-value=20 Score=19.73 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=16.7
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..|..||..+.....-..|..
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTLHIL 23 (29)
T ss_dssp EECSSSSCEESCSHHHHHHHT
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 578888888888877777765
No 199
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.14 E-value=26 Score=22.14 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=26.0
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2eoo_A 11 RPYGCNECGKNFGRHSHLIEHLK--RHFR--E-----KSSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH--HHHS--T-----TSSCCSCC
T ss_pred CCEEccccCcccCCHHHHHHHHH--HHcC--C-----CCCCCCCC
Confidence 34689999999988888888876 3542 1 23788776
No 200
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=38.74 E-value=25 Score=22.21 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=22.4
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2ely_A 12 PFKCVECGKGFSRRSALNVHHK--LHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SBCCSSSCCCBSSTTHHHHHHH--HHSC--C-----SSCSCCCC
T ss_pred CcccCccCcccCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 3568888888877777777765 3542 1 23677665
No 201
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.36 E-value=21 Score=19.85 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.7
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-+.|..
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQAHMR 24 (27)
T ss_dssp EEETTTTEEESCHHHHHHHHT
T ss_pred cCCCCCCcccCCHHHHHHHHH
Confidence 579999998888777777764
No 202
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.50 E-value=22 Score=22.57 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=24.3
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2ytm_A 12 PYKCMECGKAFGDNSSCTQHQR--LHTG--Q-----RPSGPSSG 46 (46)
T ss_dssp SSSBTTTTBCCSSHHHHHHHHH--HHHS--C-----CCCCCCCC
T ss_pred CcCCCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 4578888888888888888876 3532 1 23777766
No 203
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=37.48 E-value=2.2e+02 Score=25.32 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 017706 176 SSLTPEEIKLKAQELRERARK 196 (367)
Q Consensus 176 ~~lT~EEk~~k~~el~~k~r~ 196 (367)
-.||++|-..+++.|...+..
T Consensus 6 ~al~~~~v~~~i~~m~~fI~q 26 (233)
T 4efa_E 6 TALTPNQVNDELNKMQAFIRK 26 (233)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHH
Confidence 379999999998887766543
No 204
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.35 E-value=23 Score=22.37 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=22.5
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2ytg_A 11 KPFKCGECGKSYNQRVHLTQHQR--VHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECTTTCCEESSSHHHHTTGG--GGSS--C-----CSSCSCCC
T ss_pred CCeECCCCCcccCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34678888888877777777754 3432 1 23677666
No 205
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=37.30 E-value=9 Score=26.49 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=19.9
Q ss_pred CCCceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCC
Q 017706 1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (367)
Q Consensus 1 ~~~~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~ 50 (367)
|....+.|..||.. ...|... .-++.|+.||.
T Consensus 1 m~~~~~~CP~C~~~---------------~l~~d~~---~gelvC~~CG~ 32 (50)
T 1pft_A 1 MVNKQKVCPACESA---------------ELIYDPE---RGEIVCAKCGY 32 (50)
T ss_dssp CCSSCCSCTTTSCC---------------CEEEETT---TTEEEESSSCC
T ss_pred CCCccEeCcCCCCc---------------ceEEcCC---CCeEECcccCC
Confidence 55667889999761 1122222 23589999996
No 206
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.17 E-value=23 Score=22.34 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=24.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2yu8_A 11 KPYKCNECGKVFTQNSHLARHRR--VHTG--G-----KPSGPSSG 46 (46)
T ss_dssp SSEECSSSCCEESSSHHHHHHTH--HHHS--C-----CCSCSCCC
T ss_pred CCeECCcCCchhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 34688889988888888888865 3532 1 23777776
No 207
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=36.66 E-value=5.5 Score=23.63 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=8.3
Q ss_pred cccccCCCCC
Q 017706 43 LVCATCGKPC 52 (367)
Q Consensus 43 ~~C~~Cg~~~ 52 (367)
|.|+.||+.|
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 7899999864
No 208
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.62 E-value=41 Score=21.06 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=24.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~~ 46 (46)
T 2ep3_A 11 KPYRCAECGKAFTDRSNLFTHQK--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHT--TTTT--S-----CCCCTTCC
T ss_pred CCeECCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34688899999888888888875 4542 1 23677654
No 209
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.42 E-value=29 Score=19.01 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=16.9
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-..|..
T Consensus 4 ~~C~~C~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 4 YQCDYCGRSFSDPTSKMRHLE 24 (30)
T ss_dssp EECTTTCCEESCHHHHHHHHH
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 578999998888777777765
No 210
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=35.17 E-value=21 Score=21.08 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=17.9
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~F~~~~~L~~H~~ 23 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSKHIT 23 (33)
T ss_dssp CCCSSSCCCCSSHHHHHHHHH
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 479999999988888888875
No 211
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=34.15 E-value=20 Score=27.65 Aligned_cols=29 Identities=31% Similarity=0.765 Sum_probs=19.6
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
..|.|++|+.. +...|. ++..+|+.||+-
T Consensus 36 v~I~CnDC~~~--------------s~v~~h-----~lg~kC~~C~Sy 64 (79)
T 2k2d_A 36 VDILCNDCNGR--------------STVQFH-----ILGMKCKICESY 64 (79)
T ss_dssp EEEEESSSCCE--------------EEEECC-----TTCCCCTTTSCC
T ss_pred eEEECCCCCCC--------------ccCCce-----eecccCcCCCCc
Confidence 35899999975 344442 333589999974
No 212
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.98 E-value=12 Score=23.11 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=11.0
Q ss_pred hcccccCCCCCCCcc
Q 017706 42 NLVCATCGKPCRSKT 56 (367)
Q Consensus 42 ~~~C~~Cg~~~~~~~ 56 (367)
.|.|+.||+.|.+..
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (42)
T 2ytb_A 11 PYRCDQCGKAFSQKG 25 (42)
T ss_dssp SBCCTTTTCCBSSHH
T ss_pred CeeCCCccchhCCHH
Confidence 489999999764433
No 213
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=33.75 E-value=41 Score=19.54 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=14.7
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-..|..
T Consensus 7 ~~~C~~C~k~f~~~~~l~~H~~ 28 (35)
T 1srk_A 7 PFVCRICLSAFTTKANCARHLK 28 (35)
T ss_dssp CEECSSSCCEESSHHHHHHHHG
T ss_pred CeeCCCCCcccCCHHHHHHHHH
Confidence 3567777777776666666654
No 214
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.21 E-value=46 Score=20.89 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=25.1
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~~ 46 (46)
T 2em2_A 11 KPFKCKECGKAFRQNIHLASHLR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHCC--C-----CSSCSSCC
T ss_pred CCEECCcCCchhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888876 4542 1 23677654
No 215
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.80 E-value=19 Score=25.49 Aligned_cols=40 Identities=25% Similarity=0.569 Sum_probs=31.5
Q ss_pred ceeecCC--CcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCCC
Q 017706 4 VSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (367)
Q Consensus 4 ~~l~C~~--C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~~ 52 (367)
-..+|.. ||..+.....-+.|.. .|.. ...|.|+.||+.|
T Consensus 37 ~~~~C~~~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C~k~F 78 (79)
T 2dlk_A 37 KSFSCPEPACGKSFNFKKHLKEHMK--LHSD-------TRDYICEFSGPSS 78 (79)
T ss_dssp CCEECSCTTTCCEESSHHHHHHHHH--HHHT-------SCCCSCCSSSCCC
T ss_pred CCeECCCCCCcCccCCHHHHHHHHH--HhCC-------CCCeeCCCCCCCC
Confidence 3468998 9999999999999987 4532 1348999999864
No 216
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=32.60 E-value=40 Score=20.34 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=16.4
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-..|..
T Consensus 6 ~~~C~~C~k~f~~~~~L~~H~~ 27 (39)
T 1njq_A 6 SYTCSFCKREFRSAQALGGHMN 27 (39)
T ss_dssp SEECTTTCCEESSHHHHHHHHH
T ss_pred ceECCCCCcccCCHHHHHHHHH
Confidence 4678888888877777777765
No 217
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.49 E-value=1.1e+02 Score=23.16 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=28.2
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 116 ELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEH 153 (367)
Q Consensus 116 ~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (367)
..++++.++ -+..-.+.+.|.+.++ |+|.+++.|++.
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~-nvE~vin~LLE~ 53 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHY-DPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTT-CHHHHHHHHHTT
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 445666665 2445778888988877 899999999985
No 218
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=32.44 E-value=29 Score=19.25 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.7
Q ss_pred eecCCCcccccchHHHHHHH
Q 017706 6 LKCGDCGALLRSVQEAQEHA 25 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~ 25 (367)
.+|..||..+.....-..|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~ 22 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLIRHA 22 (30)
T ss_dssp SBCTTTCCBCSSSHHHHHHH
T ss_pred cCCcccCcccCChHHHHHHH
Confidence 46888998888777777774
No 219
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=32.07 E-value=59 Score=29.46 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 017706 115 KELLKELEAMGFPVARATRALHYS 138 (367)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~t 138 (367)
.++++.|+.+||++..|.+|+...
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 689999999999999999998654
No 220
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=31.99 E-value=11 Score=26.81 Aligned_cols=37 Identities=16% Similarity=0.450 Sum_probs=30.1
Q ss_pred ceeecCC--CcccccchHHHHHHHhhhccCCCCcchhhhhhccccc---CCCCC
Q 017706 4 VSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT---CGKPC 52 (367)
Q Consensus 4 ~~l~C~~--C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~---Cg~~~ 52 (367)
-..+|.. ||..+.....-+.|.. .|.. |.|+. ||+.|
T Consensus 30 ~~~~C~~~~C~~~f~~~~~l~~H~~--~h~~----------~~C~~~~~C~~~f 71 (85)
T 2j7j_A 30 LPYECPHEGCDKRFSLPSRLKRHEK--VHAG----------YPCKKDDSCSFVG 71 (85)
T ss_dssp CCEECCSTTCCCEESSHHHHHHHHH--HHHS----------EECCSCSSCCCEE
T ss_pred CCeeCCCCCCcCccCCHHHHHHHHH--HhCC----------CCCCCCCCCCCcc
Confidence 3478988 9999999999999986 3544 89999 99864
No 221
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=30.82 E-value=26 Score=19.21 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=16.9
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-..|..
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKTHIK 23 (30)
T ss_dssp CCCSSSSCCCSCSHHHHHHHH
T ss_pred ccCCCCCCccCCHHHHHHHHH
Confidence 479999999988887777765
No 222
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=30.65 E-value=68 Score=28.74 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.3
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh-C-CCCHHH
Q 017706 114 DKELLKELEAMGFPVARATRALHYS-G-NANVEA 145 (367)
Q Consensus 114 d~~~l~~L~~MGF~~~~a~kAL~~t-g-n~~~E~ 145 (367)
-.++++.|+.+||++..|.+|+... . +.+++.
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~ 193 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKIARPDASSET 193 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHH
Confidence 3689999999999999999999875 2 235553
No 223
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.46 E-value=29 Score=28.41 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=5.4
Q ss_pred cccccCCC
Q 017706 43 LVCATCGK 50 (367)
Q Consensus 43 ~~C~~Cg~ 50 (367)
-+||.|++
T Consensus 85 srCP~CkS 92 (105)
T 2gmg_A 85 SRCPKCKS 92 (105)
T ss_dssp SSCSSSCC
T ss_pred CCCcCCCC
Confidence 47777765
No 224
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.34 E-value=45 Score=19.18 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=14.6
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 7 ~~~C~~C~k~f~~~~~L~~H~~ 28 (35)
T 2elx_A 7 GYVCALCLKKFVSSIRLRSHIR 28 (35)
T ss_dssp SEECSSSCCEESSHHHHHHHHH
T ss_pred CeECCCCcchhCCHHHHHHHHH
Confidence 3567777777766666666654
No 225
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.34 E-value=33 Score=18.62 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=16.4
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKRHLR 23 (29)
T ss_dssp EECTTTSCEESCHHHHHHHHH
T ss_pred ccCCCCCCccCChhHHHHHHH
Confidence 478889988887777777765
No 226
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=30.30 E-value=43 Score=19.70 Aligned_cols=12 Identities=17% Similarity=0.717 Sum_probs=6.3
Q ss_pred cccccCCCCCCC
Q 017706 43 LVCATCGKPCRS 54 (367)
Q Consensus 43 ~~C~~Cg~~~~~ 54 (367)
|.|+.||+.|..
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 555555555543
No 227
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=30.22 E-value=66 Score=21.31 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
+++.+.++ -|.+...|..-|..++. +++.|++=.|++.
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Ai~~ff~~~ 45 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGW-DLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTS-CSHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCC-CHHHHHHHHHcCC
Confidence 45555553 68899999998888776 8999998777653
No 228
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=29.72 E-value=48 Score=21.94 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=21.8
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~ 31 (367)
-..+|..||..+.....-+.|.. .-|.
T Consensus 29 ~~~~C~~C~~~f~~~~~l~~H~~-~~H~ 55 (60)
T 2adr_A 29 KPYPCGLCNRAFTRRDLLIRHAQ-KIHS 55 (60)
T ss_dssp CSEECTTTCCEESSHHHHHHHHT-TTSC
T ss_pred CCccCCCCCCccCCHHHHHHHHH-HHcC
Confidence 35789999999999999999976 3443
No 229
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.28 E-value=31 Score=27.59 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=0.0
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCC-----CCCCCcccccccccc
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCG-----KPCRSKTETDLHRKR 64 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg-----~~~~~~~e~~~a~K~ 64 (367)
+.-+|..||..+.....-+.|.. .-|..-++. .|.|+.|+ +.|.+......|.+.
T Consensus 2 ~~~~C~~C~~~f~~~~~L~~H~~-~~h~h~~~~-----~~~C~~c~C~~c~~~f~~~~~l~~H~~~ 61 (155)
T 2gli_A 2 TDCRWDGCSQEFDSQEQLVHHIN-SEHIHGERK-----EFVCHWGGCSRELRPFKAQYMLVVHMRR 61 (155)
T ss_dssp CBCCBTTCCCBCSCHHHHHHHHH-HHTSSSCSS-----CCCCCBTTCTTTTCCCSSHHHHHHHTHH
T ss_pred CcCCcCCCccccCCHHHHHHHHH-hhccCCCCc-----ceeCCCCCccchhhhhhhHHHHHHHHHh
No 230
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=28.96 E-value=21 Score=29.90 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=28.3
Q ss_pred ceeecCCCcccc--------------cchHHHHHHHhhhccC--CCCcchhhhhhcccccCC
Q 017706 4 VSLKCGDCGALL--------------RSVQEAQEHAELTSHS--NFSESTEAVLNLVCATCG 49 (367)
Q Consensus 4 ~~l~C~~C~~v~--------------~g~~~aq~h~~~tgh~--~F~e~~e~v~~~~C~~Cg 49 (367)
..++|..||+.. .+...+.+..+..-+. .|.=..=.+.-++|.+|-
T Consensus 19 ~~V~C~nCgr~vPKDKAIKrf~irniVeaaavrDi~ea~v~~~~~y~lPKlyvK~~YCVSCA 80 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCISCA 80 (119)
T ss_dssp CEEECTTTCCEEETTTSEECCEEECSSCHHHHHHHHHSBCSCCCSCCSCCEEECCEECHHHH
T ss_pred ccEeeCCccccCcccceeEEEEeccCccHHHHHHHHhccccccccccccceeeeEEEeeeee
Confidence 368999999987 4556666776644332 222111235568999993
No 231
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.84 E-value=49 Score=19.37 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=15.5
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elq_A 9 PFKCSLCEYATRSKSNLKAHMN 30 (36)
T ss_dssp SEECSSSSCEESCHHHHHHHHH
T ss_pred CccCCCCCchhCCHHHHHHHHH
Confidence 4577778777777776667754
No 232
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.63 E-value=1.6e+02 Score=21.23 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 115 KELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 115 ~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
.+++.+.++ .|-++..|..-|..++. +++.|++-.|++.+.
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~W-nLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNN-NLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTS-CHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHcCCCC
Confidence 345666654 78999999999988776 999999988887643
No 233
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.59 E-value=74 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=30.3
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 115 ~~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
+.+++++.+| -+|...+.+-|..|| |++..++=|++.-
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg--sVe~TienILeGr 53 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR--SVEITTDNILEGR 53 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC--SHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHHhcC
Confidence 4577888888 245688999999999 5999999988743
No 234
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.40 E-value=40 Score=19.68 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=11.8
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-+.|..
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elr_A 10 HLCDMCGKKFKSKGTLKSHKL 30 (36)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH
T ss_pred eecCcCCCCcCchHHHHHHHH
Confidence 456666666655555555543
No 235
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=28.06 E-value=18 Score=30.19 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=30.8
Q ss_pred eecCCCccccc----chHHHHHHHhh---hccCCCCcchhhhhhcccccCCC
Q 017706 6 LKCGDCGALLR----SVQEAQEHAEL---TSHSNFSESTEAVLNLVCATCGK 50 (367)
Q Consensus 6 l~C~~C~~v~~----g~~~aq~h~~~---tgh~~F~e~~e~v~~~~C~~Cg~ 50 (367)
--|..||.|+= ++.-|..|.+. |||...-... ....+|=.|+.
T Consensus 55 w~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t~H~l~~~l~--t~~vwCY~cd~ 104 (126)
T 2i50_A 55 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLD--NWSVWCYVCDN 104 (126)
T ss_dssp EEETTTCCEEECTTSSSCHHHHHHHSCCSSCCCEEEETT--TCCEEETTTTE
T ss_pred eeeeeCCccccCCCCcchHHHHHHhCcCCCCCcEEEECC--CCeEEeCCCCc
Confidence 46889999982 45779999998 7898765542 12357777764
No 236
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.99 E-value=54 Score=19.16 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=14.1
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-..|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elv_A 9 LYDCHICERKFKNELDRDRHML 30 (36)
T ss_dssp CEECSSSCCEESSHHHHHHHHT
T ss_pred CeECCCCCCccCCHHHHHHHHH
Confidence 3567777777766666666654
No 237
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=27.86 E-value=32 Score=28.79 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=7.2
Q ss_pred CCCcccccchHHHHHHH
Q 017706 9 GDCGALLRSVQEAQEHA 25 (367)
Q Consensus 9 ~~C~~v~~g~~~aq~h~ 25 (367)
..||..+.....-+.|.
T Consensus 48 ~~C~~~f~~~~~l~~H~ 64 (190)
T 1tf6_A 48 EGCEKGFTSLHHLTRHS 64 (190)
T ss_dssp TTCCCCCSSHHHHHHHH
T ss_pred CCCChhhCCHHHHHHHH
Confidence 33444444444444443
No 238
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.64 E-value=29 Score=21.94 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=22.6
Q ss_pred eeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~C 48 (367)
..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2ytt_A 12 PYQCSECGKSFSGSYRLTQHWI--THTR-------EKPSGPSSG 46 (46)
T ss_dssp TTCCSSSCCCCSSHHHHHHHHT--HHHH-------CCCCSCCCC
T ss_pred CeeCCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3568888888877777777765 3431 123677766
No 239
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.38 E-value=1.3e+02 Score=22.13 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=32.8
Q ss_pred CHHHHHHHHh-CC-CCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 017706 114 DKELLKELEA-MG-FPVARATRALHYSGNANVEAAVNWVVEHEND 156 (367)
Q Consensus 114 d~~~l~~L~~-MG-F~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (367)
..++|.+.++ .| -+...|..-|..++. +++.|++-.|++.++
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~W-nLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNW-NIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTS-CHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 3456777665 57 788899999988887 899999988887553
No 240
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=26.65 E-value=13 Score=22.48 Aligned_cols=12 Identities=42% Similarity=1.237 Sum_probs=10.4
Q ss_pred hhhcccccCCCC
Q 017706 40 VLNLVCATCGKP 51 (367)
Q Consensus 40 v~~~~C~~Cg~~ 51 (367)
.++|.|.+|.++
T Consensus 3 lvdffcetcskp 14 (26)
T 1loi_A 3 LVDFFCETCSKP 14 (26)
T ss_dssp HHHHHHHTSSCT
T ss_pred hHHHHHHhcCCc
Confidence 468999999987
No 241
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.77 E-value=44 Score=19.65 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=14.1
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-..|..
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~~ 30 (37)
T 2elo_A 10 YSCPVCEKSFSEDRLIKSHIK 30 (37)
T ss_dssp CEETTTTEECSSHHHHHHHHH
T ss_pred cCCCCCCCccCCHHHHHHHHH
Confidence 467777777766666666654
No 242
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.25 E-value=53 Score=19.21 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=15.1
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2els_A 9 IFTCEYCNKVFKFKHSLQAHLR 30 (36)
T ss_dssp CEECTTTCCEESSHHHHHHHHH
T ss_pred CEECCCCCceeCCHHHHHHHHH
Confidence 4567777777777666666654
No 243
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=25.09 E-value=94 Score=22.77 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=27.0
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017706 116 ELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVE 152 (367)
Q Consensus 116 ~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (367)
.+++++.+| -+|...+.+-|..|| |++..++=|++
T Consensus 19 ~Mve~V~~mFPqv~~~~I~~DL~rTg--SVe~TienILe 55 (58)
T 4g3o_A 19 AMAHQIQEMFPQVPYHLVLQDLQLTR--SVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHC--CHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHHc
Confidence 456777777 245688899999997 59999988765
No 244
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.61 E-value=5.2e+02 Score=25.57 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=6.5
Q ss_pred HHHhHHHHHHHHHHH
Q 017706 214 IRIGKELLEAKRIEE 228 (367)
Q Consensus 214 r~~gKe~~~~k~~~e 228 (367)
...++++...++..+
T Consensus 505 ~~l~~~~~~~~~~~~ 519 (597)
T 3oja_B 505 DNLNKVFTHLKERQA 519 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 334444444444443
No 245
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.32 E-value=28 Score=21.66 Aligned_cols=13 Identities=15% Similarity=0.659 Sum_probs=9.7
Q ss_pred CceeecCCCcccc
Q 017706 3 GVSLKCGDCGALL 15 (367)
Q Consensus 3 ~~~l~C~~C~~v~ 15 (367)
.|+.||.+|....
T Consensus 4 ef~vqcpvcqq~m 16 (29)
T 3vhs_A 4 EFQVQCPVCQQMM 16 (29)
T ss_dssp -CEEECTTTCCEE
T ss_pred ceeeeChHHHHhC
Confidence 5889999997655
No 246
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.23 E-value=34 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=22.2
Q ss_pred ceeecCCCcccccc----hHHHHHHHhhhccCCCCcc-hhhhhhcccccCCCC
Q 017706 4 VSLKCGDCGALLRS----VQEAQEHAELTSHSNFSES-TEAVLNLVCATCGKP 51 (367)
Q Consensus 4 ~~l~C~~C~~v~~g----~~~aq~h~~~tgh~~F~e~-~e~v~~~~C~~Cg~~ 51 (367)
.-+.|..||.+..= ....+.+.. ....|.-. ...++--.|+.|.++
T Consensus 89 ~HliC~~Cg~v~~~~~~~~~~~~~~~~--~~~gf~i~~~~l~~~GiC~~C~~~ 139 (145)
T 3eyy_A 89 IHLVCRDCTNVIEADLSVAADFTAKLR--EQFGFDTDMKHFAIFGRCESCSLK 139 (145)
T ss_dssp EEEEESSSSCEEEECGGGGHHHHHHHH--HHTCEEECSCSSCEEEEECC----
T ss_pred eEEEECCCCCEEEecCccHHHHHHHHH--HhCCCEEEeEEEEEEEECHHHhCc
Confidence 34789999999822 122333322 12234221 133455689999764
No 247
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=24.10 E-value=71 Score=19.35 Aligned_cols=22 Identities=18% Similarity=0.591 Sum_probs=17.0
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 10 ~~~C~~C~k~f~~~~~L~~H~~ 31 (42)
T 2el5_A 10 PYECSECGKAFNRKDQLISHQR 31 (42)
T ss_dssp SEECSSSCCEESSHHHHHHHHG
T ss_pred CccCCCcChhhCCHHHHHHHHH
Confidence 4678888888888777777865
No 248
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.49 E-value=6.2e+02 Score=26.07 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=5.5
Q ss_pred CCCCHHHHHHH
Q 017706 176 SSLTPEEIKLK 186 (367)
Q Consensus 176 ~~lT~EEk~~k 186 (367)
..||+-||.-.
T Consensus 480 ~~l~~~~k~~~ 490 (592)
T 1f5n_A 480 QTLTEKEKEIE 490 (592)
T ss_dssp SSSCHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555433
No 249
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=23.39 E-value=70 Score=19.31 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=15.2
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 11 ~~~C~~C~k~f~~~~~l~~H~~ 32 (42)
T 2epc_A 11 PYLCGQCGKSFTQRGSLAVHQR 32 (42)
T ss_dssp CEECSSSCCEESSHHHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHHhh
Confidence 4567777777777766666754
No 250
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.11 E-value=64 Score=18.66 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=13.5
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-..|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elt_A 9 PYKCPQCSYASAIKANLNVHLR 30 (36)
T ss_dssp SEECSSSSCEESSHHHHHHHHH
T ss_pred CCCCCCCCcccCCHHHHHHHHH
Confidence 3567777776666666556643
No 251
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.11 E-value=73 Score=19.23 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=15.1
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 10 ~~~C~~C~k~f~~~~~L~~H~~ 31 (41)
T 2ept_A 10 VYECQECGKSFRQKGSLTLHER 31 (41)
T ss_dssp CEECSSSCCEESSHHHHHHHGG
T ss_pred CeECCCCCCCcCCHHHHHHHHH
Confidence 4567777777777666666754
No 252
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.67 E-value=80 Score=19.53 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=14.4
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....=..|..
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~ 33 (44)
T 2epv_A 12 PYECNECGKAFIWKSLLIVHER 33 (44)
T ss_dssp SEECSSSCCEESSHHHHHHHHG
T ss_pred CeECCCCCcccCchHHHHHHHh
Confidence 3567777777766666666654
No 253
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.47 E-value=80 Score=19.60 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=19.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~ 31 (367)
-..+|..||..+.....-+.|.. .|.
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (46)
T 2emi_A 11 RHYECSECGKAFIQKSTLSMHQR--IHR 36 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHG--GGC
T ss_pred CCCCCCCCCcccCCHHHHHHHHh--HhC
Confidence 34678889988888888888865 454
No 254
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=22.14 E-value=56 Score=24.97 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=13.5
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..|..||..+.....-..|..
T Consensus 35 ~~C~~C~~~f~~~~~l~~H~~ 55 (124)
T 1ubd_C 35 HVCAECGKAFVESSKLKRHQL 55 (124)
T ss_dssp EECTTTCCEESSHHHHHHHGG
T ss_pred eECCCCCchhCCHHHHHHHHH
Confidence 456666666666666666654
No 255
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.93 E-value=68 Score=19.91 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=20.2
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~ 31 (367)
-..+|..||..+.....-+.|.. .|.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (45)
T 2epu_A 11 KPFECTHCGKSFRAKGNLVTHQR--IHT 36 (45)
T ss_dssp CSEEETTTTEEESSHHHHHHHHT--TTS
T ss_pred cCccCCCCCCccCChHHHHHHHH--HhC
Confidence 34689999999988888888865 464
No 256
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.92 E-value=25 Score=26.17 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=7.8
Q ss_pred hhhccCCCCcchhhhhhcccccCCCC
Q 017706 26 ELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 26 ~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
..||-++++......+.|.|..||..
T Consensus 5 ~~~~g~~~~~~~~~~v~Y~C~~Cg~~ 30 (63)
T 3h0g_L 5 TSTGGTAFNPPRPATMIYLCADCGAR 30 (63)
T ss_dssp --------------CCCCBCSSSCCB
T ss_pred ccCCccccCCCCCCCeEEECCCCCCe
Confidence 34566666665444455777777753
No 257
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.56 E-value=68 Score=19.91 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=18.6
Q ss_pred ceeecCCCcccccchHHHHHHHh
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
-..+|..||..+.....-+.|..
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2eow_A 11 KPYKCNECGKAFRARSSLAIHQA 33 (46)
T ss_dssp CCEECTTSCCEESSHHHHHHHHH
T ss_pred CCeeccccCChhcCHHHHHHHHH
Confidence 34689999999988888888875
No 258
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.49 E-value=1.7e+02 Score=30.16 Aligned_cols=14 Identities=14% Similarity=-0.083 Sum_probs=7.9
Q ss_pred CCCCHHHHHHHHHH
Q 017706 139 GNANVEAAVNWVVE 152 (367)
Q Consensus 139 gn~~~E~A~~Wl~~ 152 (367)
.+.+...|+-+.+.
T Consensus 180 ~G~s~~eA~~~yL~ 193 (575)
T 2i1j_A 180 RGMLREDAMMEYLK 193 (575)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 34566666655544
No 259
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=21.31 E-value=72 Score=25.49 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=14.0
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..|..|+..+.....-+.|..
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~ 83 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIR 83 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTH
T ss_pred cCCCCcccccCCHHHHHHHHH
Confidence 457777777766666666665
No 260
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.27 E-value=72 Score=19.78 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=16.1
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2ep1_A 12 PYECSDCGKSFIKKSQLHVHQR 33 (46)
T ss_dssp SSCCSSSCCCCSSHHHHHHHHG
T ss_pred CcCCCCCCchhCCHHHHHHHHH
Confidence 3567788888877777777765
No 261
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.27 E-value=1.4e+02 Score=23.40 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=5.8
Q ss_pred HHHHHHHHhHHH
Q 017706 248 RAREKIRQKLEE 259 (367)
Q Consensus 248 ~ar~rir~qIe~ 259 (367)
.-.+.++++|+.
T Consensus 59 ~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 59 RKLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334455555543
No 262
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.17 E-value=83 Score=19.45 Aligned_cols=26 Identities=23% Similarity=0.663 Sum_probs=19.7
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~ 31 (367)
-..+|..||..+.....-+.|.. .|.
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2yrj_A 11 KPYRCGECGKAFAQKANLTQHQR--IHT 36 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHT--TTS
T ss_pred CCeECCCCCCccCCHHHHHHHHH--HcC
Confidence 34678889988888888888865 454
No 263
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=21.16 E-value=82 Score=20.27 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=19.3
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~ 31 (367)
-..+|..||+.+.....=+.|.. ..|.
T Consensus 6 kp~~C~~C~k~F~~~~~L~~H~~-~~H~ 32 (48)
T 3iuf_A 6 KPYACDICGKRYKNRPGLSYHYA-HSHL 32 (48)
T ss_dssp SCEECTTTCCEESSHHHHHHHHH-HSSC
T ss_pred cCEECCCcCcccCCHHHHHHHhh-hhcC
Confidence 34678888888887777778865 2454
No 264
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=21.15 E-value=66 Score=26.74 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=11.6
Q ss_pred ccccc--CCCCCCCcccccccc
Q 017706 43 LVCAT--CGKPCRSKTETDLHR 62 (367)
Q Consensus 43 ~~C~~--Cg~~~~~~~e~~~a~ 62 (367)
|.|+. ||+.|.+......|.
T Consensus 135 ~~C~~~~C~k~F~~~~~L~~H~ 156 (190)
T 1tf6_A 135 YECPHEGCDKRFSLPSRLKRHE 156 (190)
T ss_dssp SBCCSSSCCCBCSSHHHHHHHH
T ss_pred ccCCCCCCCchhcCHHHHHHHH
Confidence 77766 777665544444443
No 265
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=21.01 E-value=41 Score=27.77 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 017706 112 EVDKELLKELEAMGFPVARATRALHYSGNAN----VEAAVNWVVE 152 (367)
Q Consensus 112 ~~d~~~l~~L~~MGF~~~~a~kAL~~tgn~~----~E~A~~Wl~~ 152 (367)
.+.+++...|..+|||-...+.+|.+-|... +=.|+.||.+
T Consensus 70 ~~eeev~~~lK~L~YP~~isKS~L~a~g~pHsWp~~L~~L~WLve 114 (120)
T 2igp_A 70 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLID 114 (120)
T ss_dssp THHHHHHHHHHHTTCCSCCCHHHHHTTTSTTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCceeCHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 4567889999999999998888898887632 7789999976
No 266
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=20.94 E-value=58 Score=25.07 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhHHHHHHHHHHhcCCCC
Q 017706 227 EEENERKRILALRKAEKEEE-KRAREKIRQKLEEDKAERRRRLGLPP 272 (367)
Q Consensus 227 ~ee~e~k~~~e~rrrEK~ee-~~ar~rir~qIe~Dk~eR~~k~~~~~ 272 (367)
-+-.+..+.++++|++|-.. ...|+++|+.| +.++|+..
T Consensus 19 ~E~~eAlrqaEE~Rk~Kh~kmE~ERE~mRq~I-------RdKY~ikK 58 (79)
T 1l4a_E 19 AAIEEARREAEERRKEKHRKMEEEREEMRQTI-------RDKYGLKK 58 (79)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHH-------HHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcccc
Confidence 34445555666666666443 45688899999 34577654
No 267
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.69 E-value=85 Score=19.54 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=19.4
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~ 31 (367)
-..+|..||..+.....-+.|.. .|.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (46)
T 2ytp_A 11 RHYECSECGKAFARKSTLIMHQR--IHT 36 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHT--TTS
T ss_pred CCeECCcCCcccCCHHHHHHHHH--HhC
Confidence 34678888888888888888865 454
No 268
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.66 E-value=94 Score=22.95 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=30.3
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 017706 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHE 154 (367)
Q Consensus 115 ~~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (367)
..+++++.+| -+|.+...+-|..|| +++..++=|++.-
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg--sVe~TienILeGr 53 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG--CVDLTITNLLEGA 53 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC--CHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHHcCC
Confidence 3568888888 245688999999998 5999999998754
No 269
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.65 E-value=82 Score=19.33 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=16.3
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (44)
T 2emb_A 12 RYECSKCQATFNLRKHLIQHQK 33 (44)
T ss_dssp SEECTTTCCEESCHHHHHHHGG
T ss_pred CeECCCCCCccCCHHHHHHHHH
Confidence 4578888888877777777765
No 270
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.63 E-value=90 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=12.8
Q ss_pred eeecCCCcccccchHHHHHH
Q 017706 5 SLKCGDCGALLRSVQEAQEH 24 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h 24 (367)
..+|..||..+.....-..|
T Consensus 9 ~~~C~~C~k~f~~~~~L~~H 28 (37)
T 2elm_A 9 LYYCSQCHYSSITKNCLKRH 28 (37)
T ss_dssp EEECSSSSCEEECHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHH
Confidence 35677777776666666666
No 271
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.51 E-value=67 Score=19.63 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=13.4
Q ss_pred eecCCCcccccchHHHHHHHh
Q 017706 6 LKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 6 l~C~~C~~v~~g~~~aq~h~~ 26 (367)
.+|..||..+.....-+.|..
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~ 33 (44)
T 2en7_A 13 YVCNECGKAFRSKSYLIIHTR 33 (44)
T ss_dssp SCCTTTCCCCSSHHHHHHHHT
T ss_pred eECCCCCCccCCHHHHHHHhh
Confidence 456666666666666666654
No 272
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=72 Score=19.85 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=15.6
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2eq1_A 12 PYKCNECGKAFRAHSNLTTHQV 33 (46)
T ss_dssp CCCCTTTTCCCSSHHHHHHHHT
T ss_pred CeECCcCChhhCCHHHHHHHHH
Confidence 4567777777777777777755
No 273
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.28 E-value=89 Score=19.30 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=16.9
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-..|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2yts_A 12 PYICNECGKSFIQKSHLNRHRR 33 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHGG
T ss_pred CEECCCCChhhCChHHHHHHHH
Confidence 4678888888888777777765
No 274
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.26 E-value=73 Score=23.10 Aligned_cols=37 Identities=22% Similarity=0.544 Sum_probs=24.3
Q ss_pred ceeecCCCcccccchHHHHHHHhhhccCCCCcchhhhhhcccccCCCC
Q 017706 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (367)
Q Consensus 4 ~~l~C~~C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~~Cg~~ 51 (367)
-...|..|+..+. ..+-+.|...+| ..-|.|+.||+.
T Consensus 16 r~~~C~~C~~~~~-~~~L~~H~~~c~----------~~~~~C~~C~~~ 52 (75)
T 2d9k_A 16 RLAVCQHCDLELS-ILKLKEHEDYCG----------ARTELCGNCGRN 52 (75)
T ss_dssp CCEECSSSCCEEC-HHHHHHHHHHHH----------HCEEECSSSCCE
T ss_pred cccCCcccChHhh-HHHHHHHHhHcC----------CCceEcccCCCc
Confidence 3578999999995 444455543222 123799999984
No 275
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.14 E-value=69 Score=19.87 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=19.2
Q ss_pred eeecCCCcccccchHHHHHHHhhhccC
Q 017706 5 SLKCGDCGALLRSVQEAQEHAELTSHS 31 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~~tgh~ 31 (367)
..+|..||..+.....-+.|.. .|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2eq3_A 12 PYECNQCGKAFSVRSSLTTHQA--IHT 36 (46)
T ss_dssp SSEETTTTEECSSHHHHHHHHT--TSC
T ss_pred CeECCCCChhhCCHHHHHHHHH--HhC
Confidence 4678888888888888888865 454
No 276
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.03 E-value=77 Score=19.68 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=16.7
Q ss_pred eeecCCCcccccchHHHHHHHh
Q 017706 5 SLKCGDCGALLRSVQEAQEHAE 26 (367)
Q Consensus 5 ~l~C~~C~~v~~g~~~aq~h~~ 26 (367)
..+|..||..+.....-+.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2emg_A 12 PFICSECGKVFTHKTNLIIHQK 33 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHHT
T ss_pred CEECCccCcccCCHHHHHHHHH
Confidence 3578888888888777777765
No 277
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=20.01 E-value=64 Score=22.24 Aligned_cols=40 Identities=23% Similarity=0.525 Sum_probs=30.0
Q ss_pred ceeecCC--CcccccchHHHHHHHhhhccCCCCcchhhhhhcccc--cCCCCC
Q 017706 4 VSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPC 52 (367)
Q Consensus 4 ~~l~C~~--C~~v~~g~~~aq~h~~~tgh~~F~e~~e~v~~~~C~--~Cg~~~ 52 (367)
-...|.. ||..+.....-+.|.. .|.. + .-|.|+ .||+.|
T Consensus 16 ~~~~C~~~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~~~C~k~f 59 (72)
T 2epa_A 16 RSHICSHPGCGKTYFKSSHLKAHTR--THTG--E-----KPFSCSWKGCERRF 59 (72)
T ss_dssp CCEECSSTTTCCEESSHHHHHHHHH--HHSS--S-----CSEECCCTTCCCEE
T ss_pred CceeCCCCCCccccCCHHHHHHHHH--hcCC--C-----CCccCCCCCCCccc
Confidence 3568988 9999999999899986 4532 1 238996 599864
Done!