BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017709
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19
Derived Peptide
Length = 334
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 173/351 (49%), Gaps = 53/351 (15%)
Query: 42 DRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKE 101
+R+ E+ + +A+ Q H+E QR + T L + L + ++L+ LT L K
Sbjct: 3 EREAAEY--IAQARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KN 56
Query: 102 QPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGS 161
+P S KLE+W+ LKI+SFT+ VA+++ M+ + +RVQ+NI+G ++Y+D A +G
Sbjct: 57 RP-----SNKLEIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGK 110
Query: 162 SDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLH 221
+ L D QQ++L+S+ +L G+ +I+ ++ A + L L+ + + L
Sbjct: 111 NG---TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLE 167
Query: 222 ETFMQILEVFMSMGSPHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGA 268
+ +I + S W++ ++MP D V A G D TT+
Sbjct: 168 QKLKEIRNLVEQHKS-SSWINKDGSKPLLSHYMMP-DEETPLAVQACGLSPRDITTI--- 222
Query: 269 TKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS--- 316
+L+ ETR +L S ++++V++ L+D M +Q G S+ S
Sbjct: 223 ----KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSS 278
Query: 317 -GMPLAKLVPRVVQMSPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 365
+PLAK++P V S+ +E PS+ +Q + T+ +V+ F +Y S
Sbjct: 279 VSLPLAKIIPIVNGQIHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 327
>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With
N-Terminal Pex19p Peptide
Length = 330
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 167/340 (49%), Gaps = 51/340 (15%)
Query: 53 KAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKL 112
+A+ Q H+E QR + T L + L + ++L+ LT L K +P S KL
Sbjct: 8 QARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKL 58
Query: 113 ELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLID 172
E+W+ LKI+SFT+ VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L
Sbjct: 59 EIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAP 114
Query: 173 RDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFM 232
D QQ++L+S+ +L G+ +I+ ++ A + L L+ + + L + +I +
Sbjct: 115 PDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVE 174
Query: 233 SMGSPHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETR 279
S W++ ++MP D V A G D TT+ +L+ ETR
Sbjct: 175 QHKS-SSWINKDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETR 225
Query: 280 AVLSSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPR 326
+L S ++++V++ L+D M +Q G S+ S +PLAK++P
Sbjct: 226 DMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPI 285
Query: 327 VVQMSPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 365
V S+ +E PS+ +Q + T+ +V+ F +Y S
Sbjct: 286 VNGQIHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 323
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 96 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 151
++ GK L + LE +DRL+ LS+ + V L ++VS ++R + RH
Sbjct: 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH 256
Query: 152 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 209
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 257 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 315
Query: 210 QLRDIFNTVV 219
L+ +F+ +
Sbjct: 316 GLKTVFDEAI 325
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 96 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 151
++ GK L + LE +DRL+ LS+ + V L ++VS ++R + RH
Sbjct: 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH 256
Query: 152 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 209
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 257 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 315
Query: 210 QLRDIFNTVV 219
L+ +F+ +
Sbjct: 316 GLKTVFDEAI 325
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 96 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 151
++ GK L + LE +DRL+ LS+ + V L ++VS ++R + RH
Sbjct: 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH 256
Query: 152 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 209
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 257 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 315
Query: 210 QLRDIFNTVV 219
L+ +F+ +
Sbjct: 316 GLKTVFDEAI 325
>pdb|1EQ7|A Chain A, Core Structure Of The Outer Membrane Lipoprotein From
Escherichia Coli At 1.9 Angstrom Resolution
Length = 56
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 175 DQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQ 210
D Q A VD L+N + AM S+VQAA D+A + Q
Sbjct: 12 DVQTLNAKVDQLSN-DVNAMRSDVQAAKDDAARANQ 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,008,862
Number of Sequences: 62578
Number of extensions: 328351
Number of successful extensions: 925
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 7
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)