Query 017709
Match_columns 367
No_of_seqs 127 out of 198
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04882 Peroxin-3: Peroxin-3; 100.0 3.6E-96 8E-101 743.0 27.2 359 2-364 2-432 (432)
2 KOG4444 Peroxisomal assembly p 100.0 1.5E-77 3.3E-82 565.4 31.7 346 1-367 1-359 (359)
3 PF07960 CBP4: CBP4; InterPro 66.9 1.2 2.6E-05 38.3 -1.1 25 8-32 5-29 (128)
4 PF09402 MSC: Man1-Src1p-C-ter 61.7 3.8 8.3E-05 40.3 1.2 28 3-30 210-237 (334)
5 PRK11677 hypothetical protein; 58.8 4.1 8.8E-05 35.4 0.7 14 53-66 49-62 (134)
6 KOG4444 Peroxisomal assembly p 58.6 7.5 0.00016 38.4 2.5 36 175-214 195-230 (359)
7 COG2976 Uncharacterized protei 57.6 26 0.00056 32.6 5.7 94 3-100 13-116 (207)
8 PF06295 DUF1043: Protein of u 57.3 6.5 0.00014 33.7 1.7 16 53-68 45-60 (128)
9 PF14962 AIF-MLS: Mitochondria 54.4 4.2 9E-05 37.0 0.0 17 15-31 50-66 (180)
10 PRK01381 Trp operon repressor; 28.1 40 0.00086 27.8 1.8 41 188-228 6-46 (99)
11 PF15054 DUF4535: Domain of un 27.0 40 0.00088 23.9 1.4 20 12-31 1-20 (46)
12 PF02344 Myc-LZ: Myc leucine z 26.7 1.1E+02 0.0024 20.0 3.2 20 48-67 12-31 (32)
13 KOG0506 Glutaminase (contains 25.9 89 0.0019 32.9 4.2 70 267-336 120-214 (622)
14 PF15654 Tox-WTIP: Toxin with 24.7 26 0.00057 25.5 0.2 13 19-31 20-32 (54)
15 PF14974 DUF4511: Domain of un 23.4 3.5E+02 0.0076 22.6 6.5 79 269-361 5-94 (105)
16 COG3167 PilO Tfp pilus assembl 22.5 52 0.0011 30.4 1.6 55 16-85 30-84 (211)
17 PF10855 DUF2648: Protein of u 21.7 32 0.0007 22.5 0.1 18 13-30 2-19 (33)
18 COG3114 CcmD Heme exporter pro 21.4 2.7E+02 0.0058 21.2 4.9 35 124-158 16-50 (67)
No 1
>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []. Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.
Probab=100.00 E-value=3.6e-96 Score=742.99 Aligned_cols=359 Identities=34% Similarity=0.553 Sum_probs=252.9
Q ss_pred cchhHHHHHhcCCeEEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 017709 2 LSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSI 81 (367)
Q Consensus 2 ~s~~~f~~RhR~k~~i~~~v~G~~y~l~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~Feq~Q~~c~~t~l~~llp~l~~ 81 (367)
.|+|+||+||||||++|||++||||++++| .++|+.|+| ++...|+++|||+||||||||+||++||+ +|||+|++
T Consensus 2 ~~~~~f~~Rhr~k~~~~~~v~g~~y~~~~y--~~~kl~e~q-~~~~~e~~~ke~~~r~Feq~q~~c~~tv~-~llp~l~~ 77 (432)
T PF04882_consen 2 SSLRSFFRRHRRKIIVTGGVVGGGYLLYQY--AQKKLREQQ-ERMAEERFAKEQLRRRFEQTQRDCDFTVL-ALLPTLSE 77 (432)
T ss_dssp ----------------------------------------H-HHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred Cccccccccccccccccccccccccccccc--ccccccccc-ccccccccccccccccccccccccccccc-cccccccc
Confidence 489999999999999999999999999998 446899997 45677999999999999999999999886 89999999
Q ss_pred HHHHhcCchHHHHHHHccCCCCC-----------------------------------CCCchhHHHHHHHHHHHHHHHH
Q 017709 82 RIAEELDLSPLTDKLLRGKEQPY-----------------------------------TLSSSEKLELWDRLKILSFTKL 126 (367)
Q Consensus 82 ~I~~~ldve~it~~Lk~~k~~~~-----------------------------------~l~~~~K~eLW~eLKi~sftR~ 126 (367)
+|++++|+|+||++||++|+++. ..++++|+||||||||+||||+
T Consensus 78 ~i~~~ld~e~i~~~L~~~k~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~K~eLW~eLKi~sftR~ 157 (432)
T PF04882_consen 78 RILEELDVEEITEELKQKKAQRKARQAAQSDSESSDSELTSDNLSSASEANESSSKSSPLSPKSKLELWNELKIKSFTRT 157 (432)
T ss_dssp HHHHHS-HHHHHHHHCT---------------------------------------------SSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987432 2358999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC----------CCCCCChHHHHHHHHHHHHHHHhhHHHHHH
Q 017709 127 VVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPE----------DADLIDRDDQQKFLASVDYLANYGMQAMIS 196 (367)
Q Consensus 127 ~t~iY~~slL~Ll~riQLNILgr~~Yl~s~~~~~~~~~~~----------~~~~~~~~~eq~yLs~s~~ll~~G~~~l~~ 196 (367)
+|++|++|||+|+||+||||||||.|++|+...+++.... .....+.++||+|||+||||||+||.++++
T Consensus 158 vt~iY~~slL~LltRvQLNILGR~~Yl~S~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~eq~fLs~swwLL~~Gw~~l~~ 237 (432)
T PF04882_consen 158 VTLIYALSLLTLLTRVQLNILGRRLYLDSVISLASEQENSNSSLISLESSSARGVDYETEQKFLSLSWWLLNRGWKELIE 237 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHTSSSSS---SS-----------HHHHHHHHGGGHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccccccccccccccHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999987654332211 122456899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhc--CC----Ccccccccccccch-hhhhhhcc---CCCCccccc
Q 017709 197 NVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMS--MG----SPHQWVDFLMPQDI-RFYKLVTA---SGHDETTLS 266 (367)
Q Consensus 197 ~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~~~~e~--~~----~~~~~~~~LLP~~~-~~~~~~~~---~~~~~~~~~ 266 (367)
+|+++|++||++++||+.+|++||++++++||..|++ +. ..++|++||||+.. +.+++... +++......
T Consensus 238 ~Ve~aV~~vf~~~~lkd~lsl~e~~~ll~~Ir~~ve~~~~~~~~~~~~~~~~~LLP~~~~e~~~L~~~~~~~~~~~~~~~ 317 (432)
T PF04882_consen 238 RVEEAVEEVFGSISLKDELSLEEFSELLWQIRKRVESSSDTSDSRPRSNWLSYLLPPEEEEDFVLQQTGDNPSSLSSLPQ 317 (432)
T ss_dssp HHHHHHHHHHTTS-TT-EEEHHHHHHHHHHHHHHHHT------------CHHHCS----TTS-GGGTS-------TT--C
T ss_pred HHHHHHHHHhCCCCcCcccCHHHHHHHHHHHHHHHHhhcCCccccchhhHHHhhCCCCchhHHHHHhcccccccccCCCC
Confidence 9999999999999999999999999999999999987 21 14689999999643 34444332 223333346
Q ss_pred chhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCC-----------------CCCCCCcccchhhhhhh
Q 017709 267 GATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG-----------------SLISGMPLAKLVPRVVQ 329 (367)
Q Consensus 267 ~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~-----------------~~~~~~~LAkllP~v~~ 329 (367)
+++.|++|+|||+|+||||+|++|++.|+|++|+.+++++.+.+.+ .++.++||||+||++++
T Consensus 318 ~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LAklLp~l~~ 397 (432)
T PF04882_consen 318 DDSILRQLLDETRDVLESPDFSHVLESCLDEGFSTLMDNLEASFGSKSPSSPQSDLDQEEEVDIPKKKIPLAKLLPILNR 397 (432)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHCCG-----------------------EEEHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCCcccccCCCCCcchHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999876622 12346999999999999
Q ss_pred hcccccCCCCchHHHHHHcCchhHHHHHHHHhcCC
Q 017709 330 MSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM 364 (367)
Q Consensus 330 ~~~~l~~~~~~n~~l~~l~~~~el~~f~A~vYs~~ 364 (367)
|+|.++.++.||+|++.|.+++||++|||+||+||
T Consensus 398 q~~~i~~~~~~N~yl~~l~~v~eL~~fsA~VYsnF 432 (432)
T PF04882_consen 398 QSHVILNGPMPNEYLQRLNSVPELEDFSASVYSNF 432 (432)
T ss_dssp THHHHT-TT-TTCHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHccHHHHHHhHHHhhcC
Confidence 99999876669999999999999999999999986
No 2
>KOG4444 consensus Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-77 Score=565.37 Aligned_cols=346 Identities=30% Similarity=0.484 Sum_probs=303.0
Q ss_pred Cc-chhHHHHHhcCCeEEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 017709 1 ML-SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYL 79 (367)
Q Consensus 1 M~-s~~~f~~RhR~k~~i~~~v~G~~y~l~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~Feq~Q~~c~~t~l~~llp~l 79 (367)
|+ +.|+|++|||||++++|+++||||++++|+ ++++++.| ++..+|.++++|+++||||||++|++||+ .++|++
T Consensus 1 ml~~~~~flkRHr~Kvivtg~lvGs~~~~~k~~--~r~~~~~q-er~a~E~~~qarrk~hFEStqrtcd~til-~llp~l 76 (359)
T KOG4444|consen 1 MLQRSWSFLKRHRGKVIVTGVLVGSGIVLVKYV--QRWLREQQ-EREAEEHFIQARRKYHFESTQRTCDQTIL-ELLPVL 76 (359)
T ss_pred CchhHHHHHHHhcCcEEEEEEEecceEEEEeee--chHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Confidence 78 999999999999999999999999999985 45788776 33344788889999999999999999986 699999
Q ss_pred HHHHHHhcCchHHHHHHHccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 017709 80 SIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGL 159 (367)
Q Consensus 80 ~~~I~~~ldve~it~~Lk~~k~~~~~l~~~~K~eLW~eLKi~sftR~~t~iY~~slL~Ll~riQLNILgr~~Yl~s~~~~ 159 (367)
+.+|.+++|+|+|+++||++. .++|++|+||||||||.||||+++.+|++|||.+++|+||||||||.|+|++...
T Consensus 77 ~~~i~eeldvdsi~eqLkqk~----~Ltp~~KleLWeeLKI~sftrl~~~vysvsmLvl~lRvQlNILgr~iYlD~a~~l 152 (359)
T KOG4444|consen 77 RMAINEELDVDSIVEQLKQKN----QLTPKNKLELWEELKIKSFTRLVTVVYSVSMLVLLLRVQLNILGRYIYLDSAIKL 152 (359)
T ss_pred HHHHHHHcCHHHHHHHHhhCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence 999999999999999999943 3789999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhcCCCccc
Q 017709 160 GSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ 239 (367)
Q Consensus 160 ~~~~~~~~~~~~~~~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~ 239 (367)
.. .+.++.+.||+|||.+.||+.+|+..++..++.+|.+|++++++|+.+|+-++++.+++|++.+|..++|++
T Consensus 153 ~~------v~l~~~dlqqqfls~i~~l~tdam~~la~~ik~~~qeVlk~~qlk~slS~~~Leq~~~qi~n~~e~~~dp~h 226 (359)
T KOG4444|consen 153 KM------VQLNCNDLQQQFLSSITHLWTDAMVMLAKKIKKEVQEVLKNEQLKLSLSLWDLEQGWLQITNQIEIEFDPIH 226 (359)
T ss_pred cc------cccCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccHHHHhhHHHHHHHHHHHHHHHHhcCCCCc
Confidence 42 245678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cccccchhhhhhhccCCCCcccccchhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCC------
Q 017709 240 WVD-FLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG------ 312 (367)
Q Consensus 240 ~~~-~LLP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~------ 312 (367)
|.+ |++|+.+....-.+++.+|.+ .....+|.-||+++|+|++|+.|++.|++++ +++.++..+.+
T Consensus 227 ~~dkylm~~qnt~ls~~as~~~d~d----vst~f~l~~Etrq~L~st~~stvle~sln~~---~~~~~g~~t~~~e~~~q 299 (359)
T KOG4444|consen 227 WRDKYLMPFQNTPLSFLASGTSDAD----VSTSFHLNTETRQCLESTAFSTVLESSLNES---IMNKVGIKTIAKEKPLQ 299 (359)
T ss_pred hHhhhcCCCCCCchhhHhccCChHH----HHHHHHHhHHHHHHhcchhHHHHHHHHHhhh---hhccccceeecccCccc
Confidence 999 999985442222234444432 2555566679999999999999999999998 56665544411
Q ss_pred --C---CCCCCcccchhhhhhhhcccccCCCCchHHHHHHcCchhHHHHHHHHhcCCCCC
Q 017709 313 --S---LISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS 367 (367)
Q Consensus 313 --~---~~~~~~LAkllP~v~~~~~~l~~~~~~n~~l~~l~~~~el~~f~A~vYs~~~~~ 367 (367)
. .....||||++|+++++.+.+..+|+.|+|+|.+..+++++.|+|+||++|+-+
T Consensus 300 ~gn~~~~~v~~alAk~ip~ie~l~~~~tseps~n~flq~l~~~e~~kdl~anvye~f~~~ 359 (359)
T KOG4444|consen 300 EGNQQYQMVVLALAKKIPIIEGLQTTATSEPSGNEFLQTLDSVEPLKDLSANVYENFSVS 359 (359)
T ss_pred ccchHHHHHHHHHHHhhhhhhccccccccCCCcchHHHHHHhchhhhHHHhhhhhhccCC
Confidence 1 134689999999999999999988878999999999999999999999999853
No 3
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=66.86 E-value=1.2 Score=38.32 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=19.2
Q ss_pred HHHhcCCeEEeeeeeeeeeehhHhh
Q 017709 8 WRRHRRKIFITTGVLGGGYLLYKLY 32 (367)
Q Consensus 8 ~~RhR~k~~i~~~v~G~~y~l~~y~ 32 (367)
|.|.=+-++.|||++||||++++|.
T Consensus 5 w~~W~K~~~~G~~ii~~G~~l~~y~ 29 (128)
T PF07960_consen 5 WRRWAKMLVAGAVIIGGGPALVKYT 29 (128)
T ss_pred HHHHHHHHHhcceeEeechHHheec
Confidence 3455556778889999999999874
No 4
>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2). Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.
Probab=61.74 E-value=3.8 Score=40.31 Aligned_cols=28 Identities=18% Similarity=-0.038 Sum_probs=0.0
Q ss_pred chhHHHHHhcCCeEEeeeeeeeeeehhH
Q 017709 3 SLSDFWRRHRRKIFITTGVLGGGYLLYK 30 (367)
Q Consensus 3 s~~~f~~RhR~k~~i~~~v~G~~y~l~~ 30 (367)
.+++|+.||+.-+++..+++++.+++.+
T Consensus 210 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (334)
T PF09402_consen 210 QIRQFISRYRLIILGVLILLLLIKYIRY 237 (334)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999988877777766654443
No 5
>PRK11677 hypothetical protein; Provisional
Probab=58.78 E-value=4.1 Score=35.42 Aligned_cols=14 Identities=7% Similarity=0.480 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhh
Q 017709 53 KAQMQAHYEEVQRI 66 (367)
Q Consensus 53 ke~lrr~Feq~Q~~ 66 (367)
|..+-.||.++-+-
T Consensus 49 kqeV~~HFa~TA~L 62 (134)
T PRK11677 49 RQELVSHFARSAEL 62 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777788865444
No 6
>KOG4444 consensus Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.57 E-value=7.5 Score=38.44 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcc
Q 017709 175 DQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDI 214 (367)
Q Consensus 175 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ 214 (367)
+++.++++|||-|+.||. .|...++..+.+.++++.
T Consensus 195 ~~qlk~slS~~~Leq~~~----qi~n~~e~~~dp~h~~dk 230 (359)
T KOG4444|consen 195 NEQLKLSLSLWDLEQGWL----QITNQIEIEFDPIHWRDK 230 (359)
T ss_pred cccHHHHhhHHHHHHHHH----HHHHHHHhcCCCCchHhh
Confidence 689999999999999999 556677888998888874
No 7
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.56 E-value=26 Score=32.61 Aligned_cols=94 Identities=14% Similarity=0.290 Sum_probs=52.4
Q ss_pred chhHHHHHhcCCeEEeeeeeee-eeehhHhhHHHHHHHHHhHhHHHHHHHHH---------HHHHHHHHHHhhhHHHHHH
Q 017709 3 SLSDFWRRHRRKIFITTGVLGG-GYLLYKLYDSQRRIADLDRQQCEHDELLK---------AQMQAHYEEVQRIADATTL 72 (367)
Q Consensus 3 s~~~f~~RhR~k~~i~~~v~G~-~y~l~~y~~~~~kl~e~q~~~~~~e~~~k---------e~lrr~Feq~Q~~c~~t~l 72 (367)
++++||++|-+.|++ |+++|. |++-+|||..+ +....+...-.-+.+.+ ...-.-|.+--....+-++
T Consensus 13 ~ik~wwkeNGk~li~-gviLg~~~lfGW~ywq~~-q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~l 90 (207)
T COG2976 13 AIKDWWKENGKALIV-GVILGLGGLFGWRYWQSH-QVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVL 90 (207)
T ss_pred HHHHHHHHCCchhHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHH
Confidence 689999999855554 566665 47777888654 33322211001122222 1122235443322222344
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHccC
Q 017709 73 PHAMHYLSIRIAEELDLSPLTDKLLRGK 100 (367)
Q Consensus 73 ~~llp~l~~~I~~~ldve~it~~Lk~~k 100 (367)
.. -.+...-.+.-+.+.-..+|++..
T Consensus 91 -aa-L~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 91 -AA-LELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred -HH-HHHHHHHHhhccHHHHHHHHHHHH
Confidence 23 245667788899999999999754
No 8
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.30 E-value=6.5 Score=33.71 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhHH
Q 017709 53 KAQMQAHYEEVQRIAD 68 (367)
Q Consensus 53 ke~lrr~Feq~Q~~c~ 68 (367)
|..+-.||++|-+.-+
T Consensus 45 k~~V~~HF~~ta~Ll~ 60 (128)
T PF06295_consen 45 KQEVNDHFAQTAELLD 60 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677888987665543
No 9
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=54.38 E-value=4.2 Score=36.99 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=0.0
Q ss_pred eEEeeeeeeeeeehhHh
Q 017709 15 IFITTGVLGGGYLLYKL 31 (367)
Q Consensus 15 ~~i~~~v~G~~y~l~~y 31 (367)
+++|+.++||||++||-
T Consensus 50 l~vG~t~~gag~YaYkT 66 (180)
T PF14962_consen 50 LVVGVTVSGAGYYAYKT 66 (180)
T ss_dssp -----------------
T ss_pred EEECeEEEeeEEEEEEe
Confidence 56778889999999974
No 10
>PRK01381 Trp operon repressor; Provisional
Probab=28.06 E-value=40 Score=27.82 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=36.2
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHH
Q 017709 188 NYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL 228 (367)
Q Consensus 188 ~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~ 228 (367)
+.||..+++.++.+.+...-..-+.+.+|.+|...+-.+++
T Consensus 6 ~~~W~~~v~ll~~a~~~~~~~~~l~~llTp~Er~al~~R~~ 46 (99)
T PRK01381 6 NQEWQRFVDLLKQAFEEDLHLPLLTLLLTPDEREALGTRVR 46 (99)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 47999999999999999888888888999999999888754
No 11
>PF15054 DUF4535: Domain of unknown function (DUF4535)
Probab=27.04 E-value=40 Score=23.88 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.1
Q ss_pred cCCeEEeeeeeeeeeehhHh
Q 017709 12 RRKIFITTGVLGGGYLLYKL 31 (367)
Q Consensus 12 R~k~~i~~~v~G~~y~l~~y 31 (367)
|.-|.+++|++.|+|++.+|
T Consensus 1 r~~fsF~~G~~~GiY~AQNY 20 (46)
T PF15054_consen 1 RSLFSFGAGTYTGIYVAQNY 20 (46)
T ss_pred CceEEEeeccEEEEEeeecc
Confidence 45577888999999988876
No 12
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=26.73 E-value=1.1e+02 Score=19.96 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 017709 48 HDELLKAQMQAHYEEVQRIA 67 (367)
Q Consensus 48 ~e~~~ke~lrr~Feq~Q~~c 67 (367)
+-+--+||++.+.+|.++.|
T Consensus 12 qLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 33334689999999999988
No 13
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=25.86 E-value=89 Score=32.88 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHhhc----C--------HhHHHHHHHHHHHHHHHH------------HHHHHhhcCC-CCCCCCccc
Q 017709 267 GATKFDELMVETRAVLS----S--------AEYTSVVDMSFKAAVDAL------------IDEMRVQSGG-SLISGMPLA 321 (367)
Q Consensus 267 ~~~~l~~Ll~ET~d~le----S--------~~f~~Vl~~~l~~~f~~l------------~~~~~~~~~~-~~~~~~~LA 321 (367)
+++.|+++|+|.+|+.. + +-|...+..|+.-.-.++ ++.+.+-|.. .....-.+|
T Consensus 120 sDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrkqmVIPdw~~Fts~I~tIFEscke~seG~vA 199 (622)
T KOG0506|consen 120 SDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRKQMVIPDWEEFTSHIDTIFESCKESSEGKVA 199 (622)
T ss_pred CCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhcCccCCcHHHHHHHHHHHHHHHHhcCCccHH
Confidence 45899999999999883 2 455554444443322222 1222222210 112234789
Q ss_pred chhhhhhhhcccccC
Q 017709 322 KLVPRVVQMSPSLLA 336 (367)
Q Consensus 322 kllP~v~~~~~~l~~ 336 (367)
..||.++++++.+++
T Consensus 200 ~YIPQLar~sPdlW~ 214 (622)
T KOG0506|consen 200 TYIPQLARQSPDLWG 214 (622)
T ss_pred HhhHHHhccCCccce
Confidence 999999999998764
No 14
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=24.66 E-value=26 Score=25.48 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=9.8
Q ss_pred eeeeeeeeehhHh
Q 017709 19 TGVLGGGYLLYKL 31 (367)
Q Consensus 19 ~~v~G~~y~l~~y 31 (367)
++.+|.||++||-
T Consensus 20 va~~G~gY~iYR~ 32 (54)
T PF15654_consen 20 VAGVGAGYLIYRG 32 (54)
T ss_pred eeecchhhhhhhH
Confidence 4566788999974
No 15
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=23.35 E-value=3.5e+02 Score=22.58 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhhhhhh-hcccccCCCCc------h
Q 017709 269 TKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQ-MSPSLLAEPSN------N 341 (367)
Q Consensus 269 ~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~~~~~~~~LAkllP~v~~-~~~~l~~~~~~------n 341 (367)
+.-+..++|+-+.+.+|+...=++...+.+-+.++..+. +++|++.. |.+++-.-|.| =
T Consensus 5 e~ak~~l~eil~a~~~peN~~kl~eAk~~agndm~k~mq--------------~v~Pva~qiq~~VIk~yGF~~~~eG~~ 70 (105)
T PF14974_consen 5 EQAKAILTEILDAFNQPENAAKLEEAKANAGNDMLKMMQ--------------FVFPVATQIQMEVIKKYGFPESREGVM 70 (105)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHhccchHHHHHH--------------HHHHHHHHHHHHHHHHcCCCCCcchHH
Confidence 456788999999999999998888777665555554443 35666655 34444222222 2
Q ss_pred HHHHHHc----CchhHHHHHHHHh
Q 017709 342 RIIQVIR----TIPEVELFFTLLY 361 (367)
Q Consensus 342 ~~l~~l~----~~~el~~f~A~vY 361 (367)
+|.+.+. .-+|+.+++.-+=
T Consensus 71 ~f~~~i~~~e~~D~eva~l~~~iR 94 (105)
T PF14974_consen 71 QFAQLIRELEKDDPEVARLHSQIR 94 (105)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 4444443 4677777766553
No 16
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.46 E-value=52 Score=30.39 Aligned_cols=55 Identities=24% Similarity=0.519 Sum_probs=30.1
Q ss_pred EEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 017709 16 FITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAE 85 (367)
Q Consensus 16 ~i~~~v~G~~y~l~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~Feq~Q~~c~~t~l~~llp~l~~~I~~ 85 (367)
++++.|+|-||..| +.. |+.+++ +.+++ +|.+|.-|.+-+...- -||.++.++.+
T Consensus 30 L~~~~V~~lGy~f~--~s~--k~eel~--~~~~e---Ee~LKs~~q~K~~~aa------nL~~lr~Ql~e 84 (211)
T COG3167 30 LAVAAVLGLGYAFY--LSG--KLEELE--ELEAE---EEELKSTYQQKAIQAA------NLEALRAQLAE 84 (211)
T ss_pred HHHHHHHHHHHHHH--hcc--HHHHHH--HHHHH---HHHHHHHHHHHHHHHh------chHHHHHHHHH
Confidence 34556778888766 322 555442 12222 3678888865554432 33666666543
No 17
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=21.66 E-value=32 Score=22.47 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.1
Q ss_pred CCeEEeeeeeeeeeehhH
Q 017709 13 RKIFITTGVLGGGYLLYK 30 (367)
Q Consensus 13 ~k~~i~~~v~G~~y~l~~ 30 (367)
+|++|...+.|++|+..+
T Consensus 2 Kkl~i~L~l~ga~f~~fK 19 (33)
T PF10855_consen 2 KKLAIILILGGAAFYGFK 19 (33)
T ss_pred CceeehhhhhhHHHHHHH
Confidence 578887777888888776
No 18
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=21.39 E-value=2.7e+02 Score=21.25 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017709 124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARG 158 (367)
Q Consensus 124 tR~~t~iY~~slL~Ll~riQLNILgr~~Yl~s~~~ 158 (367)
.=.|-+.|++++|.+..=+=-+++-|+.||..+..
T Consensus 16 afyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r 50 (67)
T COG3114 16 AFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVAR 50 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999998754
Done!