Query 017709
Match_columns 367
No_of_seqs 127 out of 198
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mk4_A Peroxisomal biogenesis 100.0 1.6E-83 5.6E-88 626.6 28.8 302 46-366 5-328 (334)
2 1c4z_A E6AP, ubiquitin-protein 24.6 1.4E+02 0.0046 28.6 6.7 56 170-225 187-243 (358)
3 1fi6_A EH domain protein REPS1 22.9 1.7E+02 0.0058 21.3 5.7 40 208-247 53-92 (92)
4 2knc_B Integrin beta-3; transm 22.4 27 0.00094 26.3 1.0 18 45-62 41-58 (79)
5 3r2k_A Bacterioferritin, BFR; 18.0 92 0.0031 25.2 3.5 33 175-207 21-53 (154)
6 1eh2_A EPS15; calcium binding, 18.0 2.5E+02 0.0085 21.5 5.9 47 202-248 50-98 (106)
7 3uoi_A Bacterioferritin, BFR; 15.9 1.2E+02 0.004 24.6 3.6 33 175-207 23-55 (161)
8 2h7b_A Core-binding factor, ML 14.9 3.5E+02 0.012 21.4 5.8 47 176-227 9-55 (105)
9 1oeg_A Apolipoprotein E; siali 13.6 69 0.0023 19.1 1.1 16 188-203 7-22 (26)
10 2kgr_A Intersectin-1; structur 12.8 3.9E+02 0.013 20.3 5.8 41 208-248 58-98 (111)
No 1
>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A
Probab=100.00 E-value=1.6e-83 Score=626.61 Aligned_cols=302 Identities=26% Similarity=0.397 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 017709 46 CEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTK 125 (367)
Q Consensus 46 ~~~e~~~ke~lrr~Feq~Q~~c~~t~l~~llp~l~~~I~~~ldve~it~~Lk~~k~~~~~l~~~~K~eLW~eLKi~sftR 125 (367)
...|.++|+|+++||||||+||++||+ +++|+++++|++++|+|+||++||++ |++|+||||||||+||||
T Consensus 5 ~~~e~~~~ar~~~hFe~tQ~~c~~Tvl-~llp~l~~~i~~~ld~e~lt~~Lk~~--------~~~K~eLW~eLKi~s~TR 75 (334)
T 3mk4_A 5 EAAEYIAQARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALLKNR--------PSNKLEIWEDLKIISFTR 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHTTC--------CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHhC--------chHHHHHHHHHHHHHHHH
Confidence 355899999999999999999999886 99999999999999999999999985 679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 017709 126 LVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEA 205 (367)
Q Consensus 126 ~~t~iY~~slL~Ll~riQLNILgr~~Yl~s~~~~~~~~~~~~~~~~~~~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~v 205 (367)
++|++|++|||++++|+||||||||.|++++....++ ....+|.++||+||++||||+|+||.+++++|+++|+++
T Consensus 76 ~~t~iY~~slL~ll~RvQLNILGr~~Yl~sa~~~~~~----~~~~~~~~~qq~yLs~s~~ll~~G~~~l~~~Ve~~V~~v 151 (334)
T 3mk4_A 76 STVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVGKNG----TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKV 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----------CCCSSCHHHHHHHHGGGHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----CCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997432211 123578999999999999999999999999999999999
Q ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHhcC---------CCcccccccccccchhhhhhhccCCCCcccccchhHHHHHHH
Q 017709 206 LKGKQLRDIFNTVVLHETFMQILEVFMSM---------GSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMV 276 (367)
Q Consensus 206 f~~~~lk~~ls~~el~~l~~~i~~~~e~~---------~~~~~~~~~LLP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ 276 (367)
|++++||+.+|+++|++++++||+.+++. ++.+.|++||||++.... ++.+++ ...+++.|++|||
T Consensus 152 ~~~~~lk~~ls~~~l~~l~~~Ir~~ve~~~~~~~~~~~~~~~~~~~yLlP~~~~~~-~~q~~~----~~~~~~~l~~Ll~ 226 (334)
T 3mk4_A 152 LGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLSHYMMPDEETPL-AVQACG----LSPRDITTIKLLN 226 (334)
T ss_dssp HTTCCSSCEEEHHHHHHHHHHHHHHHHTC-------------CGGGGTSCCCCC-------------CCHHHHHHHHHHH
T ss_pred HCCCCcccccCHHHHHHHHHHHHHHHhccccccccccCCcccchHHhcCCCchhHH-HHhccC----CCCccHHHHHHHH
Confidence 99999999999999999999999999873 234789999999975432 222111 1234578999999
Q ss_pred HHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCCCcccchhhhhhhhcccccCCCCchHH
Q 017709 277 ETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGS-------------LISGMPLAKLVPRVVQMSPSLLAEPSNNRI 343 (367)
Q Consensus 277 ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~~-------------~~~~~~LAkllP~v~~~~~~l~~~~~~n~~ 343 (367)
||+|+||||+|++|++.|+|++|+.++|++++.|++. +..++||||+||+|+||+|.++ +|.||+|
T Consensus 227 ET~d~leS~~f~~Vl~~~l~~~F~~l~d~~~~~f~~~~~~~~~~~~~~~~~~v~~~LAklLpvv~~q~~~i~-~~~pN~~ 305 (334)
T 3mk4_A 227 ETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVC-SETPSHF 305 (334)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------CEEEHHHHHHHHHTTHHHHT-CCSTTSH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcccccccccchhhhHHHHHHHHHhhhhhcc-cCCchHH
Confidence 9999999999999999999999999999999877321 1368999999999999999775 5689999
Q ss_pred HHHHcCchhHHHHHHHHhcCCCC
Q 017709 344 IQVIRTIPEVELFFTLLYANMSD 366 (367)
Q Consensus 344 l~~l~~~~el~~f~A~vYs~~~~ 366 (367)
+|.|.++++|++|||+||++|+.
T Consensus 306 lq~l~~~~el~~f~A~VY~sf~~ 328 (334)
T 3mk4_A 306 VQDLLTMEQVKDFAANVYEAFST 328 (334)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999864
No 2
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=24.59 E-value=1.4e+02 Score=28.65 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 017709 170 LIDRDDQQKFLAS-VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFM 225 (367)
Q Consensus 170 ~~~~~~eq~yLs~-s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~ 225 (367)
.++.++-+.|..+ +.|.+++|+.+-++..++-..+|+..-.++..++.+|++.++.
T Consensus 187 ~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~ 243 (358)
T 1c4z_A 187 PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC 243 (358)
T ss_dssp BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhh
Confidence 4678899999986 6899999999999999999999998767776789999988775
No 3
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.93 E-value=1.7e+02 Score=21.33 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=29.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHhcCCCccccccccccc
Q 017709 208 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQ 247 (367)
Q Consensus 208 ~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~~~~~LLP~ 247 (367)
+.+-...++++||...+..+.....+..-|..+-..|+||
T Consensus 53 D~d~dG~i~~~EF~~~~~~~~~~~~g~~lp~~lp~~l~p~ 92 (92)
T 1fi6_A 53 DFDKDGALTLDEFCAAFHLVVARKNGYDLPEKLPESLMPK 92 (92)
T ss_dssp CTTCSSEEEHHHHHHHHHHHHHHHHSCCCCCCSCSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccCCHhhCCC
Confidence 4555667999999999988877666544456666777775
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.36 E-value=27 Score=26.34 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017709 45 QCEHDELLKAQMQAHYEE 62 (367)
Q Consensus 45 ~~~~e~~~ke~lrr~Feq 62 (367)
+||-++|-+|+.+..++.
T Consensus 41 rrE~~kFEkE~~~~~w~~ 58 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDT 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccc
Confidence 456677778888877754
No 5
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=18.05 E-value=92 Score=25.17 Aligned_cols=33 Identities=6% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 017709 175 DQQKFLASVDYLANYGMQAMISNVQAAADEALK 207 (367)
Q Consensus 175 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~ 207 (367)
.-.+|++++||+=+.|+..+....+....+..+
T Consensus 21 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~ 53 (154)
T 3r2k_A 21 ARDQYFIHSRMYEDWGFSKLYERLNHEMEEETQ 53 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988887644
No 6
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=17.98 E-value=2.5e+02 Score=21.51 Aligned_cols=47 Identities=6% Similarity=0.074 Sum_probs=33.7
Q ss_pred HHHHhc--CCCCCcccCHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q 017709 202 ADEALK--GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQD 248 (367)
Q Consensus 202 V~~vf~--~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~~~~~LLP~~ 248 (367)
+.+++. +.+=...++++||...+..+.....+..-|..+-..|+||.
T Consensus 50 l~~i~~~~D~d~dG~id~~EF~~~m~~~~~~~~g~~lP~~LP~~l~pps 98 (106)
T 1eh2_A 50 LGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPMSLPPALVPPS 98 (106)
T ss_dssp HHHHHHHHCSSCSSBCCHHHHHHHHHHHHHHHHTCCCCSSCCTTTSCTT
T ss_pred HHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCCCCCCCcccCChh
Confidence 444443 45556689999999999998887776444666777777774
No 7
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=15.86 E-value=1.2e+02 Score=24.64 Aligned_cols=33 Identities=9% Similarity=0.327 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 017709 175 DQQKFLASVDYLANYGMQAMISNVQAAADEALK 207 (367)
Q Consensus 175 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~ 207 (367)
.-.+|++++||+=+.|+..+.+..+....+..+
T Consensus 23 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~ 55 (161)
T 3uoi_A 23 AINQYFLHSKMQDNWGFTELAAHTRAESFDEMR 55 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999888877654
No 8
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=14.94 E-value=3.5e+02 Score=21.44 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHH
Q 017709 176 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI 227 (367)
Q Consensus 176 eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i 227 (367)
=++||+----|-.+-=+++.++|++-|...+.+ .++.+||..-+.+.
T Consensus 9 ck~FL~tLi~la~~~~pev~~~Vr~LVq~Ll~~-----~i~~EeFt~~Lq~~ 55 (105)
T 2h7b_A 9 LKRFLTTLQQFGNDISPEIGERVRTLVLGLVNS-----TLTIEEFHSKLQEA 55 (105)
T ss_dssp HHHHHHHHHHSHHHHCHHHHHHHHHHHHHHHTS-----SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 367887655555666778899999999998754 78889988766554
No 9
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=13.63 E-value=69 Score=19.14 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHH
Q 017709 188 NYGMQAMISNVQAAAD 203 (367)
Q Consensus 188 ~~G~~~l~~~V~~~V~ 203 (367)
.+-|..+++.|+++|.
T Consensus 7 r~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 7 QRQWAGLVEKVQAAVG 22 (26)
T ss_dssp TTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4678899999988864
No 10
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=12.83 E-value=3.9e+02 Score=20.26 Aligned_cols=41 Identities=7% Similarity=-0.054 Sum_probs=29.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q 017709 208 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQD 248 (367)
Q Consensus 208 ~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~~~~~LLP~~ 248 (367)
+.+=...++++||..++..+.....+..-|..+...|+||.
T Consensus 58 D~d~dG~I~~~EF~~~~~~~~~~~~G~~lp~~lp~~l~pps 98 (111)
T 2kgr_A 58 DIDQDGKLTAEEFILAMHLIDVAMSGQPLPPVLPPEYIPPS 98 (111)
T ss_dssp CSSCCSEEEHHHHHHHHHHHHHHHTTCCCCSSCCGGGSCTT
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHCCCCCccccCcccCCCc
Confidence 34455679999999999888877665444566667777774
Done!