Query 017709
Match_columns 367
No_of_seqs 127 out of 198
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 03:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jgca_ a.25.1.1 (A:) Bacterio 16.9 50 0.0036 25.3 3.6 32 175-206 21-52 (160)
2 d2fkza1 a.25.1.1 (A:1-154) Bac 14.1 66 0.0048 24.1 3.6 34 175-208 21-54 (154)
3 d1yuza1 a.25.1.1 (A:23-157) Ni 12.0 85 0.0062 22.9 3.6 35 174-208 20-54 (135)
4 d1lkoa1 a.25.1.1 (A:2-147) Rub 11.6 1E+02 0.0076 22.7 4.1 35 174-208 21-55 (146)
5 d1jhga_ a.4.12.1 (A:) Trp repr 10.7 67 0.0049 23.5 2.4 46 182-228 4-49 (101)
6 d1c4za_ d.148.1.1 (A:) Ubiquit 10.5 2.3E+02 0.017 24.1 6.7 56 170-225 185-241 (350)
7 d1xhca2 c.3.1.5 (A:104-225) NA 9.2 43 0.0031 24.4 0.8 22 3-24 24-45 (122)
8 d1seda_ a.219.1.1 (A:) Hypothe 9.1 1.4E+02 0.01 22.0 3.7 52 47-99 41-94 (112)
9 d2htna1 a.25.1.1 (A:1-158) Bac 8.7 1.3E+02 0.0093 22.4 3.6 34 175-208 21-54 (158)
10 d1nf4a_ a.25.1.1 (A:) Bacterio 8.4 1.3E+02 0.0097 22.7 3.6 33 175-207 23-55 (169)
No 1
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=16.92 E-value=50 Score=25.28 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 017709 175 DQQKFLASVDYLANYGMQAMISNVQAAADEAL 206 (367)
Q Consensus 175 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf 206 (367)
.-..|+..+||+=+.|+..+.+..+....+.+
T Consensus 21 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~eE~ 52 (160)
T d1jgca_ 21 AISQYWVHFRLQEDWGLAKMAKKSREESIEEM 52 (160)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999888875
No 2
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=14.11 E-value=66 Score=24.14 Aligned_cols=34 Identities=6% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017709 175 DQQKFLASVDYLANYGMQAMISNVQAAADEALKG 208 (367)
Q Consensus 175 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 208 (367)
.-..|+..+||+=+.|+..+.+..+....+.++.
T Consensus 21 A~~~Y~~~a~~~~~~~~~~la~~f~~~a~eE~~H 54 (154)
T d2fkza1 21 AINQYFLHARMYEDWGLEKLGKHEYHESIDEMKH 54 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999888776543
No 3
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=11.99 E-value=85 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017709 174 DDQQKFLASVDYLANYGMQAMISNVQAAADEALKG 208 (367)
Q Consensus 174 ~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 208 (367)
..-.+||.++.|.-..|.+.+.+..+....+..++
T Consensus 20 ~A~~~Yl~~A~~~~~~g~~~ia~~f~~~A~eE~~H 54 (135)
T d1yuza1 20 GAHAKYTAFAKAAREQGYEQIARLFEATAAAELIH 54 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHCCChHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999988887553
No 4
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=11.60 E-value=1e+02 Score=22.72 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017709 174 DDQQKFLASVDYLANYGMQAMISNVQAAADEALKG 208 (367)
Q Consensus 174 ~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 208 (367)
....+|+.++.|.=+.|++.+....+....+..++
T Consensus 21 ~A~~~Y~~~A~~a~~~g~~~ia~~f~~~A~eE~~H 55 (146)
T d1lkoa1 21 QARNRYNYFGGQAKKDGFVQISDIFAETADQEREH 55 (146)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999888876554
No 5
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=10.74 E-value=67 Score=23.49 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=35.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHH
Q 017709 182 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL 228 (367)
Q Consensus 182 ~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~ 228 (367)
++.| -+..|..+++.+..+..+-.-..=+++-+|.+|+..+-.++.
T Consensus 4 m~~~-~~~~w~~f~~ll~~~~~~~~~~~fl~dLlT~~E~~~la~R~~ 49 (101)
T d1jhga_ 4 MAEQ-RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVR 49 (101)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hhhh-hhhHHHHHHHHHHHccCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555 568899999999888876555555778899999988887653
No 6
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.49 E-value=2.3e+02 Score=24.09 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 017709 170 LIDRDDQQKFLAS-VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFM 225 (367)
Q Consensus 170 ~~~~~~eq~yLs~-s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~ 225 (367)
.++.++-+.|+.. ..|.++++...-++.+++...+++..-.++..++.+|++.++.
T Consensus 185 ~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~lf~~~eL~~li~ 241 (350)
T d1c4za_ 185 PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC 241 (350)
T ss_dssp BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhcCchhhhhcCCHHHHHHhhC
Confidence 4677889999985 6899999999999999999999998877877788888887754
No 7
>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=9.19 E-value=43 Score=24.44 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=14.8
Q ss_pred chhHHHHHhcCCeEEeeeeeee
Q 017709 3 SLSDFWRRHRRKIFITTGVLGG 24 (367)
Q Consensus 3 s~~~f~~RhR~k~~i~~~v~G~ 24 (367)
.++++++..++-+++|||.+|-
T Consensus 24 ~l~~~~~~~~~vvIiGgG~iG~ 45 (122)
T d1xhca2 24 RIKESIENSGEAIIIGGGFIGL 45 (122)
T ss_dssp HHHHHHHHHSEEEEEECSHHHH
T ss_pred HHHHHhhcCCcEEEECCcHHHH
Confidence 3567777777766666666664
No 8
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=9.14 E-value=1.4e+02 Score=22.00 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=38.3
Q ss_pred HHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHcc
Q 017709 47 EHDELLK--AQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRG 99 (367)
Q Consensus 47 ~~e~~~k--e~lrr~Feq~Q~~c~~t~l~~llp~l~~~I~~~ldve~it~~Lk~~ 99 (367)
+.+++.+ +++..++++--..-. ++...|+-..+..+-..+|+++.+++|.++
T Consensus 41 eve~~~~lCeeL~~q~~~QKaeGf-v~F~~Ll~~Fag~L~~~L~v~eti~Al~~Q 94 (112)
T d1seda_ 41 EGEAVMRICDELSEELATQKAQGF-VTFDKLLALFAGQLNEKLDVHETIFALYEQ 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHSCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHhhccccCCHHHHHHHHHHc
Confidence 3455555 777777776555544 333578899999999999999999998764
No 9
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=8.72 E-value=1.3e+02 Score=22.43 Aligned_cols=34 Identities=9% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017709 175 DQQKFLASVDYLANYGMQAMISNVQAAADEALKG 208 (367)
Q Consensus 175 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 208 (367)
.-..|+..+||+=+.|+..+.+..+....+..+.
T Consensus 21 A~~~Y~~~a~~~~~~~~~~la~~f~~~a~eE~~H 54 (158)
T d2htna1 21 AINQYFLHARMFKNWGLKRLNDVEYHESIDEMKH 54 (158)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999888776543
No 10
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=8.39 E-value=1.3e+02 Score=22.74 Aligned_cols=33 Identities=9% Similarity=0.214 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 017709 175 DQQKFLASVDYLANYGMQAMISNVQAAADEALK 207 (367)
Q Consensus 175 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~ 207 (367)
.-..|+.++||+=+.|...+.+..+....+..+
T Consensus 23 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~eE~~ 55 (169)
T d1nf4a_ 23 AIHQYMNQHYSLDDMDYGELAANMKLIAIDEMR 55 (169)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999888776654
Done!