Query 017710
Match_columns 367
No_of_seqs 187 out of 1195
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0081 RplA Ribosomal protein 100.0 7.1E-70 1.5E-74 507.9 24.8 224 132-355 3-227 (228)
2 CHL00129 rpl1 ribosomal protei 100.0 3.6E-69 7.7E-74 507.0 27.7 226 132-358 3-228 (229)
3 TIGR01169 rplA_bact ribosomal 100.0 8.5E-67 1.8E-71 490.3 28.0 226 132-357 1-226 (227)
4 PRK05424 rplA 50S ribosomal pr 100.0 7.1E-67 1.5E-71 491.7 27.5 228 132-359 2-229 (230)
5 PRK04203 rpl1P 50S ribosomal p 100.0 1.9E-55 4.1E-60 410.2 24.5 200 151-355 6-215 (215)
6 PTZ00225 60S ribosomal protein 100.0 2.6E-52 5.6E-57 389.3 22.9 198 151-354 8-214 (214)
7 PTZ00029 60S ribosomal protein 100.0 4.9E-51 1.1E-55 381.0 22.1 196 151-354 8-216 (216)
8 KOG1569 50S ribosomal protein 100.0 2.4E-49 5.3E-54 380.0 17.0 297 10-361 1-311 (323)
9 cd00403 Ribosomal_L1 Ribosomal 100.0 9.8E-45 2.1E-49 333.1 23.5 199 152-353 1-208 (208)
10 TIGR01170 rplA_mito ribosomal 100.0 4.5E-42 9.8E-47 302.3 16.2 137 150-288 1-141 (141)
11 PF00687 Ribosomal_L1: Ribosom 100.0 4E-35 8.7E-40 270.9 19.0 185 162-350 15-220 (220)
12 KOG1570 60S ribosomal protein 99.9 3.2E-25 6.9E-30 204.6 7.9 200 149-354 7-218 (218)
13 KOG1685 Uncharacterized conser 99.6 5.8E-15 1.3E-19 145.9 8.5 166 189-358 70-263 (343)
14 PF13003 MRL1: Ribosomal prote 96.4 0.005 1.1E-07 54.4 4.8 63 145-207 65-133 (133)
15 PTZ00225 60S ribosomal protein 68.4 3.2 6.8E-05 39.5 1.9 24 254-278 115-138 (214)
16 TIGR00853 pts-lac PTS system, 54.4 26 0.00056 28.9 4.7 64 200-263 2-74 (95)
17 COG1064 AdhP Zn-dependent alco 53.0 17 0.00038 37.0 4.2 58 202-263 191-252 (339)
18 cd05565 PTS_IIB_lactose PTS_II 48.3 28 0.00062 29.2 4.1 62 203-264 2-72 (99)
19 PRK13958 N-(5'-phosphoribosyl) 30.1 27 0.0006 32.7 1.4 25 202-226 3-27 (207)
20 PTZ00029 60S ribosomal protein 28.1 30 0.00066 32.8 1.3 79 251-340 121-207 (216)
21 COG0135 TrpF Phosphoribosylant 27.2 32 0.0007 32.7 1.3 25 201-225 3-27 (208)
22 KOG1198 Zinc-binding oxidoredu 24.9 1.3E+02 0.0027 30.6 5.1 44 202-245 184-231 (347)
23 PF00697 PRAI: N-(5'phosphorib 24.7 48 0.001 30.5 1.9 25 202-226 1-25 (197)
24 COG4844 Uncharacterized protei 24.0 58 0.0013 26.2 1.9 16 309-324 59-74 (78)
25 PRK01189 V-type ATP synthase s 23.6 1.9E+02 0.0042 24.4 5.2 83 203-286 4-97 (104)
26 PRK01222 N-(5'-phosphoribosyl) 21.9 44 0.00096 31.3 1.1 26 201-226 4-29 (210)
27 PLN02363 phosphoribosylanthran 21.7 47 0.001 32.4 1.3 27 200-226 47-73 (256)
28 PRK09590 celB cellobiose phosp 20.4 1.8E+02 0.0038 24.6 4.3 83 203-287 3-102 (104)
29 COG1436 NtpG Archaeal/vacuolar 20.1 2.3E+02 0.005 24.2 5.0 82 202-286 3-98 (104)
No 1
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-70 Score=507.94 Aligned_cols=224 Identities=52% Similarity=0.876 Sum_probs=220.8
Q ss_pred ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcc
Q 017710 132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 211 (367)
Q Consensus 132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e 211 (367)
|++|||+++.+.++..+.|++.|||+++++.+.++|+||||++++|++|+++++|++||+|.|||++|+..||||||+++
T Consensus 3 k~~k~~~~~~~~~d~~~~~~i~eai~~~ke~~~~kF~etVevav~L~vD~~k~dq~vrg~VvLP~g~gk~vrV~Vfa~g~ 82 (228)
T COG0081 3 KKSKRYRAASEKVDRNKLYSLEEAVKLLKETSKRKFDETVEVAVNLKVDPRKPDQRVRGSVVLPNGTGKTVRVAVFADGE 82 (228)
T ss_pred hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhccccCcceEEEEEEEcccCCCCcccccceeEECCCCCCCccEEEEEcChH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCeeccHHHHHHHHcC-CCcccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCce
Q 017710 212 KFNEAKNAGADLVGGDDLIEQIKGG-FMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKV 290 (367)
Q Consensus 212 ~aeeAkeaGAd~VGgeeLIekIk~g-~~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v 290 (367)
.+++|++||||+||++||+++|++| |.+||+|||+|||||.+++||++||||||||||++||++.|+..+|+++|+|++
T Consensus 83 ~~~~A~~AGad~Vg~edl~e~ik~~r~~~fD~~IAtpdmM~~v~~LG~vLGPRGlMP~Pk~gTvt~Dv~~av~~~K~g~v 162 (228)
T COG0081 83 KAEEAKAAGADYVGGEDLIELIKNGRAKDFDVFIATPDMMPLVGKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGTV 162 (228)
T ss_pred hHHHHHHcCCCEecHHHHHHHHhCcchhcCCEEEECchHHHHHHHHhhhcCCCCCCCCCCCCCCCcCHHHHHHHHhcCcE
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEec
Q 017710 291 EYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 355 (367)
Q Consensus 291 ~~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~ 355 (367)
+||+|+.|+||++||+++|++|+|.||+.++++.|.+.+|.+.|+.||+++||||||||+++|+.
T Consensus 163 ~~R~dk~g~ih~~iGk~sf~~e~L~eNi~a~l~~i~~~~p~~~kg~~ik~v~vstTMGP~v~v~~ 227 (228)
T COG0081 163 EFRADKAGVIHVPIGKVSFDDEKLAENIEALLNAIVKAKPAGAKGQYIKSVYVSTTMGPGVKVDL 227 (228)
T ss_pred EEEECCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHhCcCCcccceEeEEEEecCCCCCEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 2
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=100.00 E-value=3.6e-69 Score=507.03 Aligned_cols=226 Identities=63% Similarity=1.009 Sum_probs=221.4
Q ss_pred ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcc
Q 017710 132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 211 (367)
Q Consensus 132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e 211 (367)
|++|||+++.+.++ ++.|++.|||+++|+.+.++|+||||++|+|++|++++++++||+|.|||++|++.+|||||+++
T Consensus 3 ~~~k~~~~~~~~~~-~~~y~l~eAi~~~k~~~~~kF~esvel~i~L~id~kk~~~~irg~v~LP~~~gk~~kV~Vfa~~~ 81 (229)
T CHL00129 3 KLSRRTKELRSKIE-KKLYSPEEAINLLKETATAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGTGKTIRIAVLTNEE 81 (229)
T ss_pred cccHHHHHHHHhcc-ccccCHHHHHHHHHHhCcCCCCccEEEEEEECCCCCCCCCceeeEEECCCCCCCCcEEEEECChH
Confidence 45899999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceE
Q 017710 212 KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVE 291 (367)
Q Consensus 212 ~aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~ 291 (367)
.+++|++|||++||++||+++|++||.+||+||||||||++|++|||+||||||||||+.|||++||.++|+++++|+++
T Consensus 82 ~~~eAk~aGad~vg~edLi~~ik~~~~~fd~~iAt~d~m~~l~kLgriLGprGlMP~pk~gTvt~di~~~V~~~k~G~v~ 161 (229)
T CHL00129 82 KITEAKNAGADIVGSDDLIEEITKGNLDFDLLIATPDMMPKLAKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGKLE 161 (229)
T ss_pred hHHHHHHcCCCEeCHHHHHHHHHcCcccCCEEEECHHHHHHHHHhcCcccccCCCCCCCCCCccccHHHHHHHHhcCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEecccc
Q 017710 292 YRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 358 (367)
Q Consensus 292 ~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~ 358 (367)
||+|+.|+||++||+++|++|||.||+.+++++|.+++|.+++|.||+++||||||||+++|+..++
T Consensus 162 ~r~dk~g~i~~~VG~~~m~~~~l~eNi~a~l~~i~~~~p~~~kg~~ik~v~issTMGp~v~i~~~~~ 228 (229)
T CHL00129 162 YRADKTGIVHVLFGKSNFTEEDLLENLQAIYESIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLL 228 (229)
T ss_pred EEecCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998765
No 3
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=100.00 E-value=8.5e-67 Score=490.32 Aligned_cols=226 Identities=52% Similarity=0.842 Sum_probs=220.7
Q ss_pred ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcc
Q 017710 132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 211 (367)
Q Consensus 132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e 211 (367)
|++||++++.+.++..+.|++.|||+++|+.+.++|+||||++|+|++|++|+++++||+|.|||+++++.+|||||+++
T Consensus 1 ~~~k~~~~~~~~~~~~~~y~l~eAi~~lk~~~~~~f~esvel~i~L~id~kK~~~~irg~v~LP~~~gk~~kV~Vfa~~~ 80 (227)
T TIGR01169 1 KLSKRYRAAREKVDRNKLYSLDEAIALLKETATAKFDETVEVAIRLGIDPRKSDQQVRGTVVLPHGTGKTVRVAVFAKGE 80 (227)
T ss_pred CCchHHHHHHHhcccCCccCHHHHHHHHHhhccCCCCCCEEEEEEECcCCCcCCCeeeEEEECCCCCCCCcEEEEEcCch
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceE
Q 017710 212 KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVE 291 (367)
Q Consensus 212 ~aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~ 291 (367)
.+++|+++||++||++||+++|++||.+||+|||||+|||+|+.|||+||||||||+|+.|||++||.++|+++++|+++
T Consensus 81 ~~~~Ak~aGa~~vg~~eLi~~ik~~~~~fd~~iat~~~m~~l~~Lg~iLGPrGlMP~~k~gtv~~di~~~I~~~k~g~v~ 160 (227)
T TIGR01169 81 KAEEAKAAGADYVGSDDLIEKIKKGWLDFDVVIATPDMMRVVGKLGRILGPRGLMPNPKTGTVTADVAKAVKNAKKGQVE 160 (227)
T ss_pred hHHHHHHcCCCEeCHHHHHHHHHcCCccCCEEEECHHHHHHHHHhccccccccCCCCCCCCCccccHHHHHHHHHcCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEeccc
Q 017710 292 YRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 357 (367)
Q Consensus 292 ~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~ 357 (367)
||+|+.|+||++||+++|++|||.|||.+++++|.+++|.+++|.||+++||||||||+++|+..+
T Consensus 161 ~r~~k~g~i~~~VG~~~m~~e~i~eNi~a~l~~i~~~~p~~~kg~~Ik~v~lssTmGp~~~i~~~~ 226 (227)
T TIGR01169 161 FRADKAGNIHASIGKVSFDSEKLKENLEALLDAIKKAKPSGAKGQYIKNIALSSTMGPGIKVDLSS 226 (227)
T ss_pred EEeCCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCccccCCCEEEEEEEECCCCCCEEeccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999864
No 4
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=100.00 E-value=7.1e-67 Score=491.68 Aligned_cols=228 Identities=50% Similarity=0.847 Sum_probs=222.5
Q ss_pred ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcc
Q 017710 132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 211 (367)
Q Consensus 132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e 211 (367)
|++|||+.+.+.++..+.|++.|||+++++.+.++|+||||++|+|++|++|+++++||+|.|||++|++.+|||||+++
T Consensus 2 ~~~k~~~~~~~~~~~~~~y~l~eAi~~lk~~~~~kF~esvel~v~L~id~kK~~~~irg~v~LP~~~gk~~kI~Vfa~~~ 81 (230)
T PRK05424 2 KLSKRYRAAAEKVDRTKLYSLEEAIALVKETATAKFDETVDVAVNLGVDPRKADQQVRGAVVLPHGTGKTVRVAVFAKGE 81 (230)
T ss_pred CccHHHHHHHHhccccCccCHHHHHHHHHhhccCCCCCcEEEEEEeCCCCCCCCCeeeEEEECCCCCCCCcEEEEECChH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceE
Q 017710 212 KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVE 291 (367)
Q Consensus 212 ~aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~ 291 (367)
.+++|+++||++||++||+++|++||.+||+|||||+|||+|++|||+||||||||+|+.|||++||.++|+++++|+++
T Consensus 82 ~~~~Ak~aGa~~vg~eeLi~~ik~~~~~fd~~iat~~~m~~l~~Lg~iLGPrGlMP~pk~gTv~~di~~~I~~~k~g~v~ 161 (230)
T PRK05424 82 KAEEAKAAGADIVGGEDLIEKIKGGWLDFDVVIATPDMMGKVGKLGRILGPRGLMPNPKTGTVTMDVAKAVKEAKAGKVE 161 (230)
T ss_pred hHHHHHHcCCCEeCHHHHHHHHhcCCCcCCEEEECHHHHHHHHHhccccccccCCCCCCCCCcchhHHHHHHHHhcCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEeccccc
Q 017710 292 YRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 359 (367)
Q Consensus 292 ~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~~ 359 (367)
||+|++|+||++||+++|++|||.|||.+++++|.+++|.+++|.||+++||||||||+++|+..++.
T Consensus 162 ~r~~k~g~i~~~IG~~~m~~e~i~eNi~a~l~~i~~~~p~~~kg~~Ik~v~lssTmGp~~~i~~~~~~ 229 (230)
T PRK05424 162 FRVDKAGIIHAPIGKVSFDAEKLKENLKALIDAIKKAKPATAKGTYIKSVSLSSTMGPGVKVDPSSLA 229 (230)
T ss_pred EEecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccCCCEEEEEEEECCCCCCEEechHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998764
No 5
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=100.00 E-value=1.9e-55 Score=410.15 Aligned_cols=200 Identities=34% Similarity=0.560 Sum_probs=191.0
Q ss_pred CHHHHHHHHHhh-cCCCCCcCeEEEEEE-cccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHH
Q 017710 151 DLKTAISLLKQM-SSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDD 228 (367)
Q Consensus 151 ~l~EAI~~lk~~-~~~kF~EsVel~I~L-~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGgee 228 (367)
.+.|||+++++. ..++|+||||++|+| ++|++++++++||+|.|||+++++.+|||||+++.+++|+++||++||+.|
T Consensus 6 ~~~eai~~~k~~~~~~kf~esvel~v~Lk~id~~k~~~~irg~i~LP~~~~k~~~V~vf~~~~~~~~Ak~aGa~~v~~~e 85 (215)
T PRK04203 6 KIEEAVKEALEEAPKRNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGRGKEVKIAVIAKGELALQAKEAGADYVITRE 85 (215)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEecCCCCCccCceeeEEEECCCCCCCCcEEEEEcChHhHHHHHHcCCCEEeCHH
Confidence 478999999985 699999999999999 999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHHcC-------CCcccEEEeCchhHHHHhh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCCee
Q 017710 229 LIEQIKGG-------FMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIV 300 (367)
Q Consensus 229 LIekIk~g-------~~~FD~~IAtpdmmp~L~~-LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g~I 300 (367)
++++|.++ +.+||+|||||+||+.|++ ||++||||||||+|+.||+ |+.++|+++++ +++||+++++++
T Consensus 86 ~L~~i~~~~k~~rkl~~~fD~~lA~~~im~~l~k~LGk~lgprgkmP~p~~~t~--di~~~i~~~~~-~~~~r~~k~~~i 162 (215)
T PRK04203 86 ELEELGGDKRAAKKLANEYDFFIAEADLMPLIGRYLGPVLGPRGKMPTPLPPNA--DIKPLVERLKN-TVRIRTKDQPTF 162 (215)
T ss_pred HHHHHhcChHHHhhhhhcCCEEEECHHHHHHHHHHHhhhcCcCCCCCCCcCCCC--CHHHHHHHHhh-ceEEEeCCCCEE
Confidence 89999877 7899999999999999996 9999999999999999996 99999999986 799999999999
Q ss_pred EEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEec
Q 017710 301 HIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 355 (367)
Q Consensus 301 ~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~ 355 (367)
|++||+++|++|||.||+.+++++|.+.+|.+|+ ||+++||||||||+++|+.
T Consensus 163 ~v~VG~~~m~~e~l~eNi~avl~~i~~~~p~g~~--~Iksi~lktTmgp~i~i~~ 215 (215)
T PRK04203 163 HVRVGTEDMSPEELAENIDAVLNRIESKLEKGRQ--NIKSVYVKTTMGPAVKVEL 215 (215)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccc--cEEEEEEECCCCCCEEeeC
Confidence 9999999999999999999999999999999996 7999999999999999863
No 6
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=2.6e-52 Score=389.35 Aligned_cols=198 Identities=23% Similarity=0.343 Sum_probs=183.4
Q ss_pred CHHHHHHHHH-hhcCCCCCcCeEEEEEE-cccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHH
Q 017710 151 DLKTAISLLK-QMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDD 228 (367)
Q Consensus 151 ~l~EAI~~lk-~~~~~kF~EsVel~I~L-~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGgee 228 (367)
.+.|||+.++ +.+.++|+||||++|+| |+||++ ++++||+|.|||++|+..+||||++++.+++|+++|||++|.+|
T Consensus 8 ~i~~Av~~~lk~~~~~kF~Etvdl~v~Lk~iDp~k-d~~irg~v~LPhg~gk~~kV~v~~~~~~~~~Ak~aGad~v~~e~ 86 (214)
T PTZ00225 8 TLSEAIQAVLKVDKERKFKESIDLQVNLKNYDPQK-DKRFSGSLKLPNVCRPRMTVCLLCDLVHEDIAKKEGVPTMNQEE 86 (214)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEeccCcCCCc-CcccceeEECCCCCCCCcEEEEECChHHHHHHHHCCCCEECHHH
Confidence 4789999955 67789999999999999 999996 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC------CcccEEEeCchhHHHHh-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCCeeE
Q 017710 229 LIEQIKGGF------MEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVH 301 (367)
Q Consensus 229 LIekIk~g~------~~FD~~IAtpdmmp~L~-~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g~I~ 301 (367)
|++.+++++ .+||+|||+|||||.|+ .||+.|||+|+||++ +++++|+.++|+++++ +++||+++.+++|
T Consensus 87 l~~l~k~~~~~kkl~~~fD~fiA~~~~m~~lgk~LGp~~~p~gK~P~~--~~~~~dl~~~i~~~k~-~v~~r~~k~~~~~ 163 (214)
T PTZ00225 87 LKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRMGKFPTV--CSPSESLPDKVVELRS-TVKFQLKKVLCLG 163 (214)
T ss_pred HHHHHhccHHHHHHHhhCCEEEECHHHHHhhhhhcCCCCCcCCCCCcc--cCCccCHHHHHHHHhh-eeEEEecCccEEE
Confidence 999999885 89999999999999986 367777777888885 4567999999999997 9999999999999
Q ss_pred EeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEe
Q 017710 302 IPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 354 (367)
Q Consensus 302 v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~ 354 (367)
++||+++|++|||.||+.++++.|.+.+|.+|+ ||+++||||||||+++|+
T Consensus 164 ~~VGk~~m~~e~i~eNi~a~l~~l~~~~p~k~~--nIksv~iktTMGp~~~~~ 214 (214)
T PTZ00225 164 TCVGHVEMTEEQLRQNVVMAINFLVSLLKKNWQ--NLKSAYIKSTMGKPQRIY 214 (214)
T ss_pred eEEccCCCCHHHHHHHHHHHHHHHHHhCCcCCc--eEeEEEEECCCCCCEeCC
Confidence 999999999999999999999999999998776 899999999999999864
No 7
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=4.9e-51 Score=380.99 Aligned_cols=196 Identities=26% Similarity=0.414 Sum_probs=176.7
Q ss_pred CHHHHHHHHHh---hcCCCCCcCeEEEEEE-cccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeecc
Q 017710 151 DLKTAISLLKQ---MSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGG 226 (367)
Q Consensus 151 ~l~EAI~~lk~---~~~~kF~EsVel~I~L-~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGg 226 (367)
.+.+||+.+++ .+.++|+||||++|+| ++||++ +|++||+|.|||++|++.+|||||+++.+++|+++||++||+
T Consensus 8 ~~~~av~~~~~~~~~~~~~f~esv~~~i~Lk~id~~~-~~~ir~~v~LP~~~gk~~~v~V~a~~~~~~~Ak~aGa~vvg~ 86 (216)
T PTZ00029 8 ALRKAIAEILEGSEEKKRKFVETVELQIGLKDYDTQK-DKRFSGSVKLPNVPKPNLKVCVLGDAVHCDEAKKLGLDFMDI 86 (216)
T ss_pred HHHHHHHHHHhhccccccCCceEEEEEEEcCCCCCCc-CcccceeEecCCCCCCCcEEEEECCcHHHHHHHHcCCCEecH
Confidence 36889988886 3489999999999999 899997 999999999999999999999999999999999999999999
Q ss_pred HHHHH-----HHHcCC-CcccEEEeCchhHHHHhhhccccCCCCCCCCCCCC---CcCCCHHHHHHHHHcCceEEEEcCC
Q 017710 227 DDLIE-----QIKGGF-MEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAG---TVTTNIPQAIEEFKKGKVEYRADKT 297 (367)
Q Consensus 227 eeLIe-----kIk~g~-~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~G---TVt~DI~~~I~~~K~G~v~~r~dK~ 297 (367)
+||++ +++.++ .+||+||||+++||.|+ |+||| |+||++|.| |+++|+.++|+++++ +++||+++.
T Consensus 87 edL~~~~k~~k~~kkl~~~fD~flA~~~im~~l~---riLGp-~l~p~~K~P~~v~~~~d~~~~i~~~k~-~v~~r~~k~ 161 (216)
T PTZ00029 87 EGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIP---RLLGP-GLNKAGKFPTLITHNDDIEDKINELKS-SVKFQLKKV 161 (216)
T ss_pred HHHHHhhhhHHHHhcccccCCEEEECHHHHHHHH---HHhcc-ccccCCCCCCcccCccCHHHHHHHHHh-eEEEEECCC
Confidence 99998 565565 79999999999999984 55555 555555555 457899999999985 799999999
Q ss_pred CeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEe
Q 017710 298 GIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 354 (367)
Q Consensus 298 g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~ 354 (367)
+++|++||+++|++|||.||+.+++++|.+.+|+||. ||+++||||||||+++|+
T Consensus 162 ~~i~v~VG~~~~~~e~l~eNi~avl~~i~~~~~kg~~--~Iksv~lktTmgp~v~v~ 216 (216)
T PTZ00029 162 LCLGVAVGNVEMTEEQLRQNIVLSINFLVSLLKKNWQ--NIKTLHIKSTMGKPQRIY 216 (216)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhccccc--cEeEEEEECCCCCCEeCC
Confidence 9999999999999999999999999999999998887 799999999999999974
No 8
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-49 Score=379.98 Aligned_cols=297 Identities=32% Similarity=0.499 Sum_probs=241.4
Q ss_pred cceeecccCCCCCCCCCCcccccccccCccccccccccc-ccccccccccccccCcccccCCCCCCcchhhhhhhhhccc
Q 017710 10 SLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNL-SVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADT 88 (367)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (367)
+|||+|+++|++ ||++|.+|++||.-++. + ..+|.. .+....+|+-+ ++. ++. +..+.+.++++++
T Consensus 1 ml~l~~~~ss~~-~~~l~~~s~~Sv~~r~~-~-r~~~~~~~~~~k~kk~~a-~e~---~~~------~~kini~~~~~~~ 67 (323)
T KOG1569|consen 1 MLMLVYQTSSTR-QDLLPTLSACSVAIRVP-N-RHFPAATKSAKKTKKLGA-IEK---KPA------AKKINIERAKADL 67 (323)
T ss_pred Cchhhhhhcccc-ccccCCccceeEEeecc-c-cchhhHhhhhhHHHhhhc-ccc---Cch------hhhhhhHhhhccc
Confidence 589999999999 99999999999998876 3 334555 45555555444 332 111 2334556667766
Q ss_pred cccCCccccccCCCccCceeeccccccCCCcCcccccccchhcccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCC--
Q 017710 89 DLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTK-- 166 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~k-- 166 (367)
+ +.+|.+ ++..+.+||+++| +.|.+.+|+.++|++....
T Consensus 68 ~----~~~e~~---------------------pk~dv~lKr~~kr--------------~~y~vq~a~~~~ke~~~~sa~ 108 (323)
T KOG1569|consen 68 D----MEGELE---------------------PKDDVYLKRLYKR--------------QIYEVQKAVHLHKELQILSAY 108 (323)
T ss_pred c----hhhccC---------------------ccchhhhhhhcCc--------------chhhHHHHHHHHHHhccchhh
Confidence 6 222111 4556667776533 5788899999999887433
Q ss_pred --CCcCeEEEEEEcccCC---CCCcceeeeeecCCCC--CCceEEEEEcCc-ccHHHHHHcCCCeeccHHHHHHHHcCCC
Q 017710 167 --FTETAEAHFRLNIDPK---YNDQQLRATVSLPKGT--GKSVKVAVLAQG-EKFNEAKNAGADLVGGDDLIEQIKGGFM 238 (367)
Q Consensus 167 --F~EsVel~I~L~id~k---K~d~~iRg~V~LPh~~--gk~~kV~Vfa~~-e~aeeAkeaGAd~VGgeeLIekIk~g~~ 238 (367)
..+++.+.|.|++... +....+.+.+..||++ |+.++|+||++| +..++|+++||++|||.|||++|++|.+
T Consensus 109 ~~pk~~~~l~i~l~~~a~~~~k~~~~~~~~v~vP~Pf~~ge~r~IavFtn~~~kveeArEaGA~l~GG~dLIkkI~~Gei 188 (323)
T KOG1569|consen 109 NVPKQPVNLRIELNMLAEKETKGVAPLQGSVTVPHPFAHGEIRKIAVFTNDASKVEEAREAGAALAGGTDLIKKIKSGEI 188 (323)
T ss_pred hCCCCceeeeEEeeeeeeeeccccCCCceeEeccccCCCCceEEEEEecCChHHHHHHHhccccccccHHHHHHhhcCeE
Confidence 3567888888876642 2234556667777774 568889999999 5689999999999999999999999975
Q ss_pred --cccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcC-ceEEEEcCCCeeEEeeeCCCCChhHHH
Q 017710 239 --EFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKG-KVEYRADKTGIVHIPFGKADFSEDDLL 315 (367)
Q Consensus 239 --~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G-~v~~r~dK~g~I~v~VGk~sfs~eeL~ 315 (367)
+||++||+|||||.|..|+++|||| |||+|.|||++||+++|++|++| .++|+.++.++++++||+++|+++||+
T Consensus 189 ~~Dyd~~vA~Pdim~~l~~Lr~iL~~r--~Pn~k~gtvg~nipemieeFk~G~~i~~d~~~~~~~~~~vGkl~mt~e~i~ 266 (323)
T KOG1569|consen 189 VADYDFYVAHPDIMPELNRLRKILGPR--FPNPKRGTVGRNIPEMIEEFKNGHEIKFDEERENILQIKVGKLDMTSEQIL 266 (323)
T ss_pred EEeeceeeecchHHHHHHHHHHHhccc--CCCcccCccccchHHHHHHhhCCcccccccccCceeeeeeeeecCCHHHHH
Confidence 5669999999999999999999999 99999999999999999999999 689999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEeccccccc
Q 017710 316 INFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDY 361 (367)
Q Consensus 316 ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~~~~ 361 (367)
+||.+++++++.++|+ .+|.||.+++|+|+|||++.|+++.+..+
T Consensus 267 ~Ni~a~i~av~t~rp~-~~G~fv~ra~L~Ss~g~~i~l~i~p~i~~ 311 (323)
T KOG1569|consen 267 ANIQAVIAAVCTHRPK-ALGPFVVRALLRSSPGEGILLKIDPLIPK 311 (323)
T ss_pred HHHHHHHHHHHhcCCc-ccCceeeeeEeecCCCCceeEecccccce
Confidence 9999999999999998 68999999999999999999999999988
No 9
>cd00403 Ribosomal_L1 Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.
Probab=100.00 E-value=9.8e-45 Score=333.08 Aligned_cols=199 Identities=47% Similarity=0.761 Sum_probs=187.9
Q ss_pred HHHHHHHHHhhc--CCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHH
Q 017710 152 LKTAISLLKQMS--STKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDL 229 (367)
Q Consensus 152 l~EAI~~lk~~~--~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGgeeL 229 (367)
+.+||+.+++.. ...|+|+|+++|+|+..++++++++++.|.|||++++..+|||||++++.++|+++||+++|+++|
T Consensus 1 ~~~Ai~~l~~~~~~~~~~~~~v~l~i~l~~~~~~~~~~~~~~i~LPh~~~~~~~i~v~~~d~~~~~a~~~~a~vig~~~L 80 (208)
T cd00403 1 LEEAIKALKKTSVKKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAKDEQAKEAKAAGADVVGGEDL 80 (208)
T ss_pred CHHHHHHHHHhccccCCCCceEEEEEEeCCCCCccccccceeEECCCCCCCCeEEEEEcChHhHHHHHHcCCCEEcHHHH
Confidence 368999999988 899999999999997776667899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC-----CcccEEEeCchhHHHHh-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCCeeEEe
Q 017710 230 IEQIKGGF-----MEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIP 303 (367)
Q Consensus 230 IekIk~g~-----~~FD~~IAtpdmmp~L~-~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g~I~v~ 303 (367)
++++++++ .+||+||||+++|+.+. .|||+|||||+||+++.||+++|+.++|+++++ ++.|+.+++++++++
T Consensus 81 ~~~~~~~~~~~l~~~~D~fla~~~~~~~~~~~lgk~~~~k~k~P~~~~~t~~~~l~~~i~~~~~-~~~~~~~~~~~~~v~ 159 (208)
T cd00403 81 KKKIKNGEAKKLAKDFDLFLADPRIMMLLPKLLGKVLGPRGKMPNPKTGTVTEDLAKAIEEAKS-SVEFRLDKGGCIHVP 159 (208)
T ss_pred HHHhhcchhhhhhhcCCEEEECHHHHHHHHHHhccccccCCCCCcCCCCCCcccHHHHHHHHHh-CeEEEECCCCEEEEE
Confidence 99999997 89999999999888886 799999999999999999999999999999986 799999999999999
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHcCC-CCCCCceeeEEEEeCCCCCcEEE
Q 017710 304 FGKADFSEDDLLINFLAAVKSIEANKP-KGAKGVYWKSAYICSSMGPSIRL 353 (367)
Q Consensus 304 VGk~sfs~eeL~ENI~Avl~~I~~~kP-~g~kg~~Iksi~IsSTMGPsi~I 353 (367)
||+++|+++||+||+.+++++|.+++| .+|+ +|+++||+|||||+++|
T Consensus 160 VG~~~m~~~~l~eNi~~vi~~i~~~~~~~~~~--~i~~v~lktt~~~~lpI 208 (208)
T cd00403 160 VGKVSMSPEQLVENIEAVINALVKKLPSKKGQ--NIKSIYLKTTMGPSLPI 208 (208)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhCCcccCe--EEEEEEEECCCCCCeEC
Confidence 999999999999999999999999999 7666 89999999999999986
No 10
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=100.00 E-value=4.5e-42 Score=302.29 Aligned_cols=137 Identities=42% Similarity=0.687 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHhhcCC--CCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCccc-HHHHHHcCCCeecc
Q 017710 150 YDLKTAISLLKQMSST--KFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEK-FNEAKNAGADLVGG 226 (367)
Q Consensus 150 Y~l~EAI~~lk~~~~~--kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~-aeeAkeaGAd~VGg 226 (367)
|++.||++++|+.+.. +|+||||++|+|++++++++ +||+|.|||+++++.||||||+++. +++|+++||+++|+
T Consensus 1 y~i~eA~~~lk~~~~~~~~~~etvel~i~L~~~~~~~~--irg~v~LP~~~~k~~kV~Vf~~~~~~~~~Ak~aGa~~vg~ 78 (141)
T TIGR01170 1 YKVIKAFVYLKTKSISMYVPKQSVNLDIGLLMELGKES--VQGMFSFPHPFGKEPKIAVFTKGASEVEEAREAGADYVGG 78 (141)
T ss_pred CCHHHHHHHHHHhcccCCCCCceEEEEEEECCCCCCCC--ceEEEECCCCCCCCCEEEEECCChHHHHHHHHcCCCEeCH
Confidence 8999999999999988 99999999999998876544 9999999999999999999999987 68899999999999
Q ss_pred HHHHHHHHcCCCc-ccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcC
Q 017710 227 DDLIEQIKGGFME-FDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKG 288 (367)
Q Consensus 227 eeLIekIk~g~~~-FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G 288 (367)
+|||++|++|+.+ ||+|||||+|||+|+.|||+||||||||||+.|||++||.++|+++|+|
T Consensus 79 edLi~~i~~g~~~~fd~~iA~~~~m~~l~~Lg~iLGprGlMP~~k~gTv~~di~~~I~~~k~G 141 (141)
T TIGR01170 79 DDLIKKIEDGEIKPFDYLIAHPDIVPELAQLRRLLGPKGLMPSPKRGTVGDNLLSMIETFKKG 141 (141)
T ss_pred HHHHHHHhcCCcccccEEEECHHHHHHHHHhhcccccCcCCCCCCCCCcccCHHHHHHHHhCc
Confidence 9999999999999 9999999999999999999999999999999999999999999999986
No 11
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L1 is the largest protein from the large ribosomal subunit. The L1 protein contains two domains: 2-layer alpha/beta domain and a 3-layer alpha/beta domain (interrupts the first domain). In Escherichia coli, L1 is known to bind to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups: Eubacterial L1. Algal and plant chloroplast L1. Cyanelle L1. Archaebacterial L1. Vertebrate L10A. Yeast SSM1. ; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3QOY_A 3BBO_D 1VSA_A 1VSP_A 2NOQ_G 3IZS_A 1S1I_A 3O5H_A 3O58_A 2WRL_C ....
Probab=100.00 E-value=4e-35 Score=270.90 Aligned_cols=185 Identities=30% Similarity=0.509 Sum_probs=164.7
Q ss_pred hcCCCCCcCeEEEEEEcccCCCCCcce-eeeeecCCCCC-CceEEEEEcCcccHHH---------HHHcCCCeeccHHHH
Q 017710 162 MSSTKFTETAEAHFRLNIDPKYNDQQL-RATVSLPKGTG-KSVKVAVLAQGEKFNE---------AKNAGADLVGGDDLI 230 (367)
Q Consensus 162 ~~~~kF~EsVel~I~L~id~kK~d~~i-Rg~V~LPh~~g-k~~kV~Vfa~~e~aee---------AkeaGAd~VGgeeLI 230 (367)
....+|+++|+++|.+...+.+.+.++ ++.|.|||++. +..+||||+++.+.++ +.++|++++|+++|+
T Consensus 15 ~~~~~~~~~v~l~i~~~~~~~~~~~~~~~~~i~LPh~~~~~~~~vcli~~d~~~~~~~~~~~~~~~~~~~~~vi~~~~L~ 94 (220)
T PF00687_consen 15 NEDDNFDESVYLQITLKKIPKKKDKSFKPGRIPLPHPLYIKNSKVCLIVKDPQKKAKEKEKLEEKAVEAGAKVIGGEELK 94 (220)
T ss_dssp CCCSSSSTEEEEEEEESSSTTSSCTST-EEEEEBSTSSS-SSSBEEEEESCHHHHHH-------HHHHTTCSEEECHHHH
T ss_pred cccCCCCcEEEEEEEeCcCCCccccccccceeeecCCCCCCccEEEEEecCcchhhhhhhhhhhhhhhcccceecHHHHH
Confidence 347789999999999977666666777 99999999998 8899999998866433 467899999999999
Q ss_pred HH---HHcCC---CcccEEEeCchhHHHHhh-hcccc-CCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEc-CCCeeE
Q 017710 231 EQ---IKGGF---MEFDKLIASPDMMVKVAS-LGKIL-GPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRAD-KTGIVH 301 (367)
Q Consensus 231 ek---Ik~g~---~~FD~~IAtpdmmp~L~~-LGkiL-GPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~d-K~g~I~ 301 (367)
++ ++.++ .+||+|||++++|+.|.+ ||++| ||||+||+|...+ .+|+.+.|+++.+| +.|+.. ++++++
T Consensus 95 ~~~~~~~~~r~l~~~~d~flad~~i~~~l~~~Lgk~~~~~k~k~P~~v~~~-~~~l~~~i~~~~~~-~~~~~~~~~~~~~ 172 (220)
T PF00687_consen 95 KKYKTIEAKRKLAKSYDFFLADPRIMPKLPKLLGKIFYGKKGKMPIPVTLS-KEDLKEQIEKALNS-TKFRLSGKGGCIS 172 (220)
T ss_dssp HHHCHHHHCHHHHHCSSEEEEEGGGHHHHHHHTHHHH-CCTTTSCEEBSSH-TSCHHHHHHHHHTE-EEEEETBTSSEEE
T ss_pred HHHHHHHHHHHHHhhcCEEEECHHHHHHHHHhhhhheecccCCcceEEecc-chhHHHHHHHHHCC-EEEEeeccCCeee
Confidence 98 88887 899999999999999997 99999 9999999995321 37999999999974 667777 899999
Q ss_pred EeeeCCCCChhHHHHHHHHHHHHHHHc-CCCCCCCceeeEEEEeCCCCCc
Q 017710 302 IPFGKADFSEDDLLINFLAAVKSIEAN-KPKGAKGVYWKSAYICSSMGPS 350 (367)
Q Consensus 302 v~VGk~sfs~eeL~ENI~Avl~~I~~~-kP~g~kg~~Iksi~IsSTMGPs 350 (367)
++||+++|+++||+|||.++++.|.++ .|.||. +|+++||+||||||
T Consensus 173 v~VG~~~~~~~~i~eNi~~~i~~i~~~~~~~g~~--~I~~i~ikst~s~~ 220 (220)
T PF00687_consen 173 VKVGHLSMTDEQIVENIKAVIKAIVSKPLPKGWK--NIKSIYIKSTMSPS 220 (220)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHTTTSSSSG--SEEEEEEEESSSEE
T ss_pred cCccCCCCCHHHHHHHHHHHHHHHHHhhhccCcc--eEEEEEEECCCCCC
Confidence 999999999999999999999999999 898888 59999999999996
No 12
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.2e-25 Score=204.59 Aligned_cols=200 Identities=25% Similarity=0.382 Sum_probs=170.2
Q ss_pred cCCHHHHHHHHHh----hcCCCCCcCeEEEEEE-cccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCe
Q 017710 149 EYDLKTAISLLKQ----MSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADL 223 (367)
Q Consensus 149 ~Y~l~EAI~~lk~----~~~~kF~EsVel~I~L-~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~ 223 (367)
+|++.+||..+.- ...++|.|||+++++| |+||. .+.++.|++.|||..++..++|||++..+..+|++.|.++
T Consensus 7 ~~~l~~~v~~i~~~~~~~k~~~~~~tielQi~Lk~ydp~-Kdkr~s~~~~l~~~~~p~~k~cv~gd~~h~~~ak~~~~p~ 85 (218)
T KOG1570|consen 7 EEALREAVAEILLRSKEFKNRNFVETIELQINLKNYDPQ-KDKRFSGSVKLPHAPRPKMKVCVIGDQQHCDEAKAIDLPA 85 (218)
T ss_pred HHHHHHHHHHHHhccccccCccceeeeeeeecccccChh-HhCcccceEecCCCCCccceeeeechHHHHHHhhcCCCCC
Confidence 5667777766664 3368999999999999 99997 5889999999999999999999999999999999999998
Q ss_pred eccHHHHH-----HH-HcCCCcccEEEeCchhHHHHh-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcC
Q 017710 224 VGGDDLIE-----QI-KGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADK 296 (367)
Q Consensus 224 VGgeeLIe-----kI-k~g~~~FD~~IAtpdmmp~L~-~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK 296 (367)
.--++|-+ ++ ++-...||+|||+.+...+|. -||.-|-.-|++|+++.. .+|+.+.+++.++ +++|+.++
T Consensus 86 m~~d~lkklnk~Kklvkklakky~~flase~~ikQlpr~lgp~l~kaGkfps~l~~--~d~l~akv~evk~-t~k~q~kk 162 (218)
T KOG1570|consen 86 MDIDALKKLNKNKKLVKKLAKKYDAFLASESLIKQLPRILGPGLSKAGKFPSLLVH--GDSLYAKVEEVKS-TIKFQMKK 162 (218)
T ss_pred cCHHHHhcCcccchHHHHHHHHhhhHHhhHHHHHHhhhhhcccccccccCCccccc--hHHHHHHHHHHHh-hHHHHHHh
Confidence 88555431 12 222568999999988877774 234444466999999954 3899999999998 68999999
Q ss_pred CCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEe
Q 017710 297 TGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 354 (367)
Q Consensus 297 ~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~ 354 (367)
.-+..|.||++.|++|+|.+||.-.++++.+.+.++|+ +++.++|+|||||+.+++
T Consensus 163 vKOGavaVGhv~M~d~el~~nI~l~vnFlVSlLKknwQ--Nvral~iKst~g~p~~ly 218 (218)
T KOG1570|consen 163 VLCLAVAVGHVGMTDEELVYNIHLAVNFLVSLLKKNWQ--NVRALYIKSTMGKPQRLY 218 (218)
T ss_pred hhheeeeecCCCCCHHHHHHhhhhhhhhHHHHHhhccc--chhheeeccCCCCceecC
Confidence 99999999999999999999999999999999999999 589999999999998874
No 13
>KOG1685 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=5.8e-15 Score=145.93 Aligned_cols=166 Identities=20% Similarity=0.264 Sum_probs=134.8
Q ss_pred eeeeecCCCC----C--CceEEEEEcCcccH-----HHH----HHcCCC----eeccHHHHHHHHc------CCCcccEE
Q 017710 189 RATVSLPKGT----G--KSVKVAVLAQGEKF-----NEA----KNAGAD----LVGGDDLIEQIKG------GFMEFDKL 243 (367)
Q Consensus 189 Rg~V~LPh~~----g--k~~kV~Vfa~~e~a-----eeA----keaGAd----~VGgeeLIekIk~------g~~~FD~~ 243 (367)
+-.|++||.+ - +...||+|.+|.+. +.| .++|.. +++..+|-.+.+. ....||+|
T Consensus 70 ~~~IP~k~~~~~~~~~~~~~~vcLIvkD~~~~~~t~~~~~d~l~~~gi~~itkVI~~~~LK~~yksyeaKr~L~~sfDlf 149 (343)
T KOG1685|consen 70 KLKIPLKHLLKKLLLKHDDTDVCLIVKDLQQSYLTEEDAEDLLESEGIKSITKVISLSKLKRDYKSYEAKRKLLSSFDLF 149 (343)
T ss_pred cccccCcchhcccccCCCCCceEEEecCchhccccHHHHHHHHHHcCCccceeeeehHHHHHHHHHHHHHHHHHhhccEE
Confidence 3345555552 1 46789999988542 223 457877 7777777655443 24689999
Q ss_pred EeCchhHHHHh-hhccccCCCCCCCCCCCCCcCCC--HHHHHHHHHcCceEEEEcCCCeeEEeeeCCCCChhHHHHHHHH
Q 017710 244 IASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTN--IPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLA 320 (367)
Q Consensus 244 IAtpdmmp~L~-~LGkiLGPKGLMPnpK~GTVt~D--I~~~I~~~K~G~v~~r~dK~g~I~v~VGk~sfs~eeL~ENI~A 320 (367)
||+.+++|.|. -|||.+..+.+.|.+.+ ..-.+ +...|+++. |.+.|++.+..++.+.+|+++|+.++|.|||.+
T Consensus 150 laD~RV~~~LP~llGK~f~q~kk~Pv~i~-l~k~~~~l~~qi~~a~-~~t~~~~~~g~~~~i~vg~l~~~~~~l~ENv~~ 227 (343)
T KOG1685|consen 150 LADDRVIPLLPKLLGKEFYQKKKVPVSIR-LSKKNELLKQQIENAC-GSTYFRLRKGTSSAIKVGHLGNTSEELAENVVA 227 (343)
T ss_pred EEcchhHhHHHHHhhhhhcccccCceEEE-ecccchHHHHHHHHHh-hhheeeccCCceeEEEeccccccHHHHHHHHHH
Confidence 99999999998 48999999999998874 22244 799999998 578899987778999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEecccc
Q 017710 321 AVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 358 (367)
Q Consensus 321 vl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~ 358 (367)
+++.|....|.||. +|+++||+|.-+|+++|+.+..
T Consensus 228 vlk~l~e~~P~~~~--~Irsl~lKt~~s~aLPly~s~~ 263 (343)
T KOG1685|consen 228 VLKGLSEILPGGWK--NIRSLHLKTSRSPALPLYVSVI 263 (343)
T ss_pred HHHHHHHHccchHh--HhHHHhhhccCCcccceeeccc
Confidence 99999999999999 6999999999999999998764
No 14
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates.
Probab=96.40 E-value=0.005 Score=54.40 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=48.9
Q ss_pred cCCCcCCHHHHHHHHHhhcCCCCC---cCeEEEEEEcccC--CCCCcceeeeeecCCCC-CCceEEEEE
Q 017710 145 EGKKEYDLKTAISLLKQMSSTKFT---ETAEAHFRLNIDP--KYNDQQLRATVSLPKGT-GKSVKVAVL 207 (367)
Q Consensus 145 ~~~~~Y~l~EAI~~lk~~~~~kF~---EsVel~I~L~id~--kK~d~~iRg~V~LPh~~-gk~~kV~Vf 207 (367)
=..+.|.+++||.+|+.++...|. +.|-+.++|++.. ++.-.++-+.|.|||+. ....+|+||
T Consensus 65 yPr~Iyeve~Ai~mLKkfQ~lDfT~pkQ~VYldL~Ldm~l~KKkkVePF~s~i~lPypF~~eiNKv~VF 133 (133)
T PF13003_consen 65 YPRPIYEVEKAIDMLKKFQILDFTSPKQPVYLDLTLDMKLEKKKKVEPFASVILLPYPFTSEINKVLVF 133 (133)
T ss_pred ccccHHHHHHHHHHHHhcccccCCCCCCcEEEeeeehhhhccccccCCCccceecccccccccceeeeC
Confidence 356789999999999999988874 5677777775554 34457899999999996 455688886
No 15
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=68.35 E-value=3.2 Score=39.48 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.4
Q ss_pred hhhccccCCCCCCCCCCCCCcCCCH
Q 017710 254 ASLGKILGPRGLMPNPKAGTVTTNI 278 (367)
Q Consensus 254 ~~LGkiLGPKGLMPnpK~GTVt~DI 278 (367)
..|||+|||+|+ |++|.+|+.+.-
T Consensus 115 ~~lgk~LGp~~~-p~gK~P~~~~~~ 138 (214)
T PTZ00225 115 KTVPRLVGPHMH-RMGKFPTVCSPS 138 (214)
T ss_pred HhhhhhcCCCCC-cCCCCCcccCCc
Confidence 468999999987 999999864333
No 16
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=54.43 E-value=26 Score=28.93 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=39.1
Q ss_pred CceEEEEEcCcc---------cHHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCC
Q 017710 200 KSVKVAVLAQGE---------KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPR 263 (367)
Q Consensus 200 k~~kV~Vfa~~e---------~aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPK 263 (367)
+..+|+++|..- ..+.+++.|.++--..-=+.++.....+||++|.+|.+-..+..+-+++.+.
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~ 74 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKK 74 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhc
Confidence 346888888641 1245677787642111112233333457999999999988777666666543
No 17
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=52.97 E-value=17 Score=36.97 Aligned_cols=58 Identities=28% Similarity=0.283 Sum_probs=39.7
Q ss_pred eEEEEEcCc-ccHHHHHHcCCCeecc---HHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCC
Q 017710 202 VKVAVLAQG-EKFNEAKNAGADLVGG---DDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPR 263 (367)
Q Consensus 202 ~kV~Vfa~~-e~aeeAkeaGAd~VGg---eeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPK 263 (367)
-+|.+|+.. ++.+.|++.|||++-. ++..+.+++- ||.+|-|.. -+.+...-+.|.+.
T Consensus 191 a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~---~d~ii~tv~-~~~~~~~l~~l~~~ 252 (339)
T COG1064 191 AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEI---ADAIIDTVG-PATLEPSLKALRRG 252 (339)
T ss_pred CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhh---CcEEEECCC-hhhHHHHHHHHhcC
Confidence 578888866 4578899999997654 5667777653 999998776 44444444444443
No 18
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.34 E-value=28 Score=29.21 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=39.5
Q ss_pred EEEEEcCc--------cc-HHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCCC
Q 017710 203 KVAVLAQG--------EK-FNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRG 264 (367)
Q Consensus 203 kV~Vfa~~--------e~-aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPKG 264 (367)
+|+++|.+ +. .+.|++.|.++--..-=+.++.....++|+++.+|.+--.+..+-+++++.|
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ 72 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLG 72 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcC
Confidence 57788753 11 2557888887421111123344445689999999998887777777776654
No 19
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=30.09 E-value=27 Score=32.67 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=23.0
Q ss_pred eEEEEEcCcccHHHHHHcCCCeecc
Q 017710 202 VKVAVLAQGEKFNEAKNAGADLVGG 226 (367)
Q Consensus 202 ~kV~Vfa~~e~aeeAkeaGAd~VGg 226 (367)
+|||=+++.++++.|.++|||++|-
T Consensus 3 vKICGit~~eda~~~~~~GaD~iGf 27 (207)
T PRK13958 3 LKFCGFTTIKDVTAASQLPIDAIGF 27 (207)
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEE
Confidence 7999999999999999999999985
No 20
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=28.08 E-value=30 Score=32.79 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=40.4
Q ss_pred HHHhhhccccCCCCCCCCC---CCCCcCCCHHHHHHH--H--Hc-CceEEEEcCCCeeEEeeeCCCCChhHHHHHHHHHH
Q 017710 251 VKVASLGKILGPRGLMPNP---KAGTVTTNIPQAIEE--F--KK-GKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAV 322 (367)
Q Consensus 251 p~L~~LGkiLGPKGLMPnp---K~GTVt~DI~~~I~~--~--K~-G~v~~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl 322 (367)
+.| |+.|+|+|+||.+ .. .+..-+.++... + .+ |.+.+++ |...+..-++--....+.+-|...+
T Consensus 121 riL---Gp~l~p~~K~P~~v~~~~-d~~~~i~~~k~~v~~r~~k~~~i~v~V---G~~~~~~e~l~eNi~avl~~i~~~~ 193 (216)
T PTZ00029 121 RLL---GPGLNKAGKFPTLITHND-DIEDKINELKSSVKFQLKKVLCLGVAV---GNVEMTEEQLRQNIVLSINFLVSLL 193 (216)
T ss_pred HHh---ccccccCCCCCCcccCcc-CHHHHHHHHHheEEEEECCCCEEEEEE---cCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 457 7789999999966 22 233333333211 1 12 3344444 4455555555545555444444332
Q ss_pred HHHHHcCCCCCCCceeeE
Q 017710 323 KSIEANKPKGAKGVYWKS 340 (367)
Q Consensus 323 ~~I~~~kP~g~kg~~Iks 340 (367)
.+.+...+..||++
T Consensus 194 ----~kg~~~Iksv~lkt 207 (216)
T PTZ00029 194 ----KKNWQNIKTLHIKS 207 (216)
T ss_pred ----ccccccEeEEEEEC
Confidence 34444556666653
No 21
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=27.25 E-value=32 Score=32.71 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=23.1
Q ss_pred ceEEEEEcCcccHHHHHHcCCCeec
Q 017710 201 SVKVAVLAQGEKFNEAKNAGADLVG 225 (367)
Q Consensus 201 ~~kV~Vfa~~e~aeeAkeaGAd~VG 225 (367)
.+|||=++..+.++.|-++|||++|
T Consensus 3 ~vKICGlt~~eda~~a~~~gad~iG 27 (208)
T COG0135 3 KVKICGLTRLEDAKAAAKAGADYIG 27 (208)
T ss_pred ceEECCCCCHHHHHHHHHcCCCEEE
Confidence 4799999999999999999999998
No 22
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=24.88 E-value=1.3e+02 Score=30.60 Aligned_cols=44 Identities=30% Similarity=0.344 Sum_probs=34.5
Q ss_pred eEEEEEcCcccHHHHHHcCCCee---ccHHHHHHHHcC-CCcccEEEe
Q 017710 202 VKVAVLAQGEKFNEAKNAGADLV---GGDDLIEQIKGG-FMEFDKLIA 245 (367)
Q Consensus 202 ~kV~Vfa~~e~aeeAkeaGAd~V---GgeeLIekIk~g-~~~FD~~IA 245 (367)
.+|.+.|..+..+.+++.|||.+ ..++.++++++- ...||++|-
T Consensus 184 ~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD 231 (347)
T KOG1198|consen 184 IKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLD 231 (347)
T ss_pred cEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEE
Confidence 67888899899999999999866 346677787764 567888773
No 23
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=24.67 E-value=48 Score=30.53 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=20.1
Q ss_pred eEEEEEcCcccHHHHHHcCCCeecc
Q 017710 202 VKVAVLAQGEKFNEAKNAGADLVGG 226 (367)
Q Consensus 202 ~kV~Vfa~~e~aeeAkeaGAd~VGg 226 (367)
+|||=+++.+.+..+.++|+|++|-
T Consensus 1 vKICGi~~~~da~~~~~~g~d~~Gf 25 (197)
T PF00697_consen 1 VKICGITRPEDARLAAELGADYLGF 25 (197)
T ss_dssp EEEE---SHHHHHHHHHHTSSEEEE
T ss_pred CeECCCCcHHHHHHHHHcCCCEEee
Confidence 5899999999999999999999995
No 24
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.01 E-value=58 Score=26.24 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=13.7
Q ss_pred CChhHHHHHHHHHHHH
Q 017710 309 FSEDDLLINFLAAVKS 324 (367)
Q Consensus 309 fs~eeL~ENI~Avl~~ 324 (367)
=++|||+|||.++++.
T Consensus 59 et~eeLv~NIY~~i~E 74 (78)
T COG4844 59 ETPEELVENIYTFIEE 74 (78)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 3789999999998864
No 25
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=23.60 E-value=1.9e+02 Score=24.42 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=53.7
Q ss_pred EEEEEcCcccHHHHHHcCCC---eeccHHHHHHHHcC--CCcccEEEeCchhHHHHh-hhccccCCCCCCCCC----CCC
Q 017710 203 KVAVLAQGEKFNEAKNAGAD---LVGGDDLIEQIKGG--FMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNP----KAG 272 (367)
Q Consensus 203 kV~Vfa~~e~aeeAkeaGAd---~VGgeeLIekIk~g--~~~FD~~IAtpdmmp~L~-~LGkiLGPKGLMPnp----K~G 272 (367)
+|+|+.+.+..-=-+-+|.+ .+..+|..+++..- ..+|=+++-|.++...+. .+=..+. ....|.- -+|
T Consensus 4 kIaVvGd~DtilGFrlaGi~~v~~~~~~e~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~-~~~~P~II~Ipipg 82 (104)
T PRK01189 4 CITVIGERDVVLGFRLLGIGDTIEAEGKDLVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLE-SSSKPLVVFIPLPG 82 (104)
T ss_pred eEEEEcCHHHHHHHHHcCCceEEEcCCHHHHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHh-ccCCCeEEEEeCCC
Confidence 79999998887777888996 44556655555542 357889999999988875 2333333 4455422 223
Q ss_pred Cc-CCCHHHHHHHHH
Q 017710 273 TV-TTNIPQAIEEFK 286 (367)
Q Consensus 273 TV-t~DI~~~I~~~K 286 (367)
+- .+.|.+.|+++-
T Consensus 83 ~~~~~~i~~~ik~ai 97 (104)
T PRK01189 83 ISEEESIEEMAKRIL 97 (104)
T ss_pred CccchhHHHHHHHHh
Confidence 21 235777777765
No 26
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=21.92 E-value=44 Score=31.31 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.3
Q ss_pred ceEEEEEcCcccHHHHHHcCCCeecc
Q 017710 201 SVKVAVLAQGEKFNEAKNAGADLVGG 226 (367)
Q Consensus 201 ~~kV~Vfa~~e~aeeAkeaGAd~VGg 226 (367)
..|||=+++-+.++.|.++|||++|-
T Consensus 4 ~vKICGi~~~eda~~~~~~Gad~iGf 29 (210)
T PRK01222 4 RVKICGITTPEDAEAAAELGADAIGF 29 (210)
T ss_pred eEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 37899999988899999999999995
No 27
>PLN02363 phosphoribosylanthranilate isomerase
Probab=21.72 E-value=47 Score=32.37 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.1
Q ss_pred CceEEEEEcCcccHHHHHHcCCCeecc
Q 017710 200 KSVKVAVLAQGEKFNEAKNAGADLVGG 226 (367)
Q Consensus 200 k~~kV~Vfa~~e~aeeAkeaGAd~VGg 226 (367)
..+|||=+++.+.++.|.++|||++|-
T Consensus 47 ~~VKICGit~~eda~~a~~~GaD~iGf 73 (256)
T PLN02363 47 PLVKMCGITSARDAAMAVEAGADFIGM 73 (256)
T ss_pred ceEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 358999999999999999999999985
No 28
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.40 E-value=1.8e+02 Score=24.61 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=47.7
Q ss_pred EEEEEcCcc---------cHHHHHHcCCCe----eccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCCCC----
Q 017710 203 KVAVLAQGE---------KFNEAKNAGADL----VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGL---- 265 (367)
Q Consensus 203 kV~Vfa~~e---------~aeeAkeaGAd~----VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPKGL---- 265 (367)
+|+++|..- ..+.|++.|.++ .+..++ +... ...+||+++.+|.+--.+..+-++..++|.
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~-~~~~-~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEG-EKAI-AAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHH-HHhh-ccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEE
Confidence 688888641 124567778764 343332 2211 134789999999998877766666655432
Q ss_pred CCCCCCCCcCCCHHHHHHHHHc
Q 017710 266 MPNPKAGTVTTNIPQAIEEFKK 287 (367)
Q Consensus 266 MPnpK~GTVt~DI~~~I~~~K~ 287 (367)
+|..--|.+--|+.+.++.++.
T Consensus 81 I~~~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 81 IPPQAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred eCHHHcCCCccCHHHHHHHHHh
Confidence 2322223222477777766653
No 29
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=20.13 E-value=2.3e+02 Score=24.15 Aligned_cols=82 Identities=13% Similarity=0.290 Sum_probs=50.2
Q ss_pred eEEEEEcCcccHHHHHHcCCCe---eccHH-HHH----HHHcCCCcccEEEeCchhHHHHh-hhcccc--CCC---CCCC
Q 017710 202 VKVAVLAQGEKFNEAKNAGADL---VGGDD-LIE----QIKGGFMEFDKLIASPDMMVKVA-SLGKIL--GPR---GLMP 267 (367)
Q Consensus 202 ~kV~Vfa~~e~aeeAkeaGAd~---VGgee-LIe----kIk~g~~~FD~~IAtpdmmp~L~-~LGkiL--GPK---GLMP 267 (367)
.+|||+.+.+-+.--+=+|+.. +..++ ++. .+.+. ++++++-|.+++..+. .+-++. +.. =..|
T Consensus 3 ~~I~VIGd~dtvtGFrLaGv~~~~v~~~~~~~~~~~~~~l~~~--~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv~IP 80 (104)
T COG1436 3 MKIAVIGDRDTVTGFRLAGVRVVYVADDEEDELRAALRVLAED--DVGIILITEDLAEKIREEIRRIIRSSVLPAIVEIP 80 (104)
T ss_pred eEEEEEEccchhhceeeecceeEEEecChhHHHHHHHHhhccC--CceEEEEeHHHHhhhHHHHHHHhhccCccEEEEeC
Confidence 5799999988766666678763 44433 232 33333 9999999999999886 344442 111 1236
Q ss_pred CCCCCCcCCCHHHHHHHHH
Q 017710 268 NPKAGTVTTNIPQAIEEFK 286 (367)
Q Consensus 268 npK~GTVt~DI~~~I~~~K 286 (367)
+| ...-.+.+.+.|++..
T Consensus 81 s~-~~~~~~~~~~~I~k~v 98 (104)
T COG1436 81 SP-GKEEEEPLRELIRRAV 98 (104)
T ss_pred CC-CCCccchHHHHHHHHH
Confidence 64 2233367888877764
Done!