Query 017710
Match_columns 367
No_of_seqs 187 out of 1195
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_D Ribosomal protein L1; l 100.0 4.4E-99 2E-103 741.0 14.8 350 3-366 1-351 (352)
2 3u42_A 50S ribosomal protein L 100.0 1.6E-71 5.5E-76 521.6 21.5 226 132-357 3-229 (229)
3 2wwq_5 50S ribosomal protein L 100.0 1.2E-68 4.1E-73 503.5 24.6 228 132-359 3-230 (234)
4 3qoy_A 50S ribosomal protein L 100.0 8.1E-69 2.8E-73 506.8 22.2 229 132-360 3-235 (242)
5 3j21_A 50S ribosomal protein L 100.0 1.8E-58 6.1E-63 429.6 15.7 199 151-354 7-215 (216)
6 2zkr_5 60S ribosomal protein L 100.0 9.4E-58 3.2E-62 423.6 15.1 198 151-354 5-212 (212)
7 1i2a_A 50S ribosomal protein L 100.0 6.2E-57 2.1E-61 420.0 16.9 199 151-356 5-214 (219)
8 1mzp_A 50S ribosomal protein L 100.0 2.5E-55 8.5E-60 408.7 17.9 195 152-354 8-216 (217)
9 2ftc_A Mitochondrial ribosomal 100.0 1.1E-52 3.7E-57 383.6 22.0 183 171-359 3-189 (189)
10 3iz5_A 60S ribosomal protein L 100.0 1.2E-54 4.1E-59 403.6 -4.0 200 149-354 6-216 (216)
11 3o58_A L10A, 60S ribosomal pro 100.0 1.6E-54 5.5E-59 403.0 -14.4 199 150-354 7-217 (217)
12 2ov7_A 50S ribosomal protein L 100.0 7.5E-39 2.5E-43 279.4 17.1 135 132-356 2-136 (137)
13 3iz5_A 60S ribosomal protein L 55.6 6.9 0.00023 35.7 3.0 23 254-277 117-139 (216)
14 1nsj_A PRAI, phosphoribosyl an 28.9 16 0.00055 32.9 0.9 26 201-226 3-28 (205)
15 3o58_A L10A, 60S ribosomal pro 28.8 7.2 0.00025 35.6 -1.4 19 255-274 119-137 (217)
16 1v5x_A PRA isomerase, phosphor 28.6 16 0.00056 32.8 0.9 26 201-226 2-27 (203)
17 3nbm_A PTS system, lactose-spe 27.6 22 0.00075 28.9 1.4 61 199-263 4-77 (108)
18 2aze_B Transcription factor E2 24.7 37 0.0013 27.8 2.3 16 340-356 88-103 (106)
19 3bbo_R Ribosomal protein L19; 22.9 18 0.00061 33.8 0.0 31 168-199 146-176 (233)
20 4aaj_A N-(5'-phosphoribosyl)an 21.3 29 0.00098 31.8 1.1 32 194-226 15-46 (228)
No 1
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.4e-99 Score=740.97 Aligned_cols=350 Identities=67% Similarity=0.993 Sum_probs=224.6
Q ss_pred ccCCCCccceeecccCCCCCCCCCCccccccc-ccCcccccccccccccccccccccccccCcccccCCCCCCcchhhhh
Q 017710 3 TCGTTPSSLMLTYAATPVHPQDLTPSLSLLSF-KPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAA 81 (367)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||++||||||||||+++| |||||| |+|| +|..+ ..+||||+|+ +++|++.+|++||++++...+ ...+++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 74 (352)
T 3bbo_D 1 MATAAPPSLSLCYASSSFQ-YQQDPS--FQTHFKPLLL-NSSLCRLTLN-QRERSCLKWVDFTSQKQSPKS-VSFRVLAA 74 (352)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCchhHHHhhhhccch-hccCch--hhhhcCccch-hhhcchhhhc-ccccchhhhhhhhhhhhcCCC-cceEEeee
Confidence 5999999999999999999 999999 8888 67644 5579999998 899999999999999999877 55678999
Q ss_pred hhhhccccccCCccccccCCCccCceeeccccccCCCcCcccccccchhcccchHHHHHHhhhcCCCcCCHHHHHHHHHh
Q 017710 82 SAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQ 161 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~ 161 (367)
+|||++++ ++||+|++ ++++++++ +|.+|||||.++++|+-+|++|||+++.+++|..+.|++.|||+++|+
T Consensus 75 ~~~~~~~~----~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~k~m~k~~K~~~~~~~~~d~~~~Y~l~EAi~llK~ 146 (352)
T 3bbo_D 75 VAAEAEVA----DMEEEEGE---SGGVATLP-SPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQ 146 (352)
T ss_dssp -------------------------------------------------CCCCCSSTTTTTSCCSSSCCCTTTTHHHHST
T ss_pred hhhhhhhh----hHHHhhcc---CCcccccc-CCCCccccccccchhhhhhhhHHHHHHHhcccccCCCCHHHHHHHHHh
Confidence 99999998 44444332 34455654 999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHHHHHHcCCCccc
Q 017710 162 MSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFD 241 (367)
Q Consensus 162 ~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGgeeLIekIk~g~~~FD 241 (367)
.+.++|+||||++|+|+||+++++|++||+|.|||+++++.+|||||+|+++++|+++||++||++||+++|++||.+||
T Consensus 147 ~~~~KFdETVEl~I~L~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAdvVG~edLikkIKkg~~dFD 226 (352)
T 3bbo_D 147 MSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFD 226 (352)
T ss_dssp TCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCSEEECTTTHHHHTTTCCCCS
T ss_pred ccccCCCceEEEEEEeCCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCCccCHHHHHHHHHhchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCCeeEEeeeCCCCChhHHHHHHHHH
Q 017710 242 KLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAA 321 (367)
Q Consensus 242 ~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g~I~v~VGk~sfs~eeL~ENI~Av 321 (367)
+||||||||++|++|||+||||||||||+.|||+.||.++|+++++|+++||+++.|++|++||+++|++|||.|||.++
T Consensus 227 ~fIAtpdmM~~lgrLGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~fR~dK~g~ihv~VGk~sfs~EqL~ENI~Av 306 (352)
T 3bbo_D 227 KLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFAT 306 (352)
T ss_dssp EEEECSSSHHHHGGGGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEEECCSSCEECCCCEETTSCHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHhhcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEEEeCCCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEeccccccccCCCC
Q 017710 322 VKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 366 (367)
Q Consensus 322 l~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~~~~~~~~~ 366 (367)
+++|.+.+|++|+|.||+++||||||||+++||..++.+|+.||+
T Consensus 307 i~~L~k~kP~~~KG~yIksv~LkSTMGPgi~I~~~~l~d~~~p~~ 351 (352)
T 3bbo_D 307 IKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351 (352)
T ss_dssp HHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC---------
T ss_pred HHHHHHhCcccccCceEEEEEEECCCCCCEEEEhhhcccccCCCC
Confidence 999999999999999999999999999999999999999999986
No 2
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=1.6e-71 Score=521.60 Aligned_cols=226 Identities=48% Similarity=0.848 Sum_probs=216.5
Q ss_pred ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcc
Q 017710 132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 211 (367)
Q Consensus 132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e 211 (367)
|++|||+++.+.+|..+.|++.|||+++|+.+.++|+||||++|+|++|+++++|+|||+|.|||++|++.||||||+++
T Consensus 3 k~~k~~~~~~~~~d~~k~y~~~eAi~~lk~~~~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~ 82 (229)
T 3u42_A 3 KHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGE 82 (229)
T ss_dssp ------CCGGGSSCTTCCBCHHHHHHHHHHHCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTH
T ss_pred cccHHHHHHHhccCccCCCCHHHHHHHHHHhCCCCCCccEEEEEEEccCCCCCCCceeEEEECCCCCCCceEEEEecChH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHh-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCce
Q 017710 212 KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKV 290 (367)
Q Consensus 212 ~aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~-~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v 290 (367)
++++|++||||+||++|||++|++||++||+||||||||++|+ .|||+|||||||||||.|||++|+.++|+++++|++
T Consensus 83 ~~~eAk~aGAd~vG~~dLi~kIk~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v 162 (229)
T 3u42_A 83 KIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRI 162 (229)
T ss_dssp HHHHHHHTTCSEEECTHHHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEE
T ss_pred hHHHHHhcCCceeCcHHHHHHHhcCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceE
Confidence 9999999999999999999999999999999999999999997 799999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEeccc
Q 017710 291 EYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 357 (367)
Q Consensus 291 ~~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~ 357 (367)
+||.|+.|+||++||+++|++|||.||+.+++++|.+.+|.+++|.||+++||||||||+++||..+
T Consensus 163 ~~r~dk~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~~ik~v~lssTmGp~i~id~~s 229 (229)
T 3u42_A 163 EFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS 229 (229)
T ss_dssp EEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEECSSSCCEEBCTTC
T ss_pred EEEeCCCCeecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeEEEEEEECCCCcCeEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998753
No 3
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1.2e-68 Score=503.53 Aligned_cols=228 Identities=46% Similarity=0.749 Sum_probs=222.8
Q ss_pred ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcc
Q 017710 132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 211 (367)
Q Consensus 132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e 211 (367)
|++|||+++.+++|.++.|++.|||+++++.+.++|+||||++|+|+|||++++|++||+|.|||+++++.+|||||+++
T Consensus 3 ~~~k~~~~~~~~~~~~~~y~~~eAv~~lk~~~~~kF~etvel~i~L~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~ 82 (234)
T 2wwq_5 3 KLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGA 82 (234)
T ss_dssp CCCHHHHHHHTTSCCSSEECHHHHHHHHHHTCCCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSS
T ss_pred cccHHHHHHHhhccccCccCHHHHHHHHHHhccCCCCceEEEEEEECCCCcccCcccceEEeCCCCCCCCcEEEEEcCch
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceE
Q 017710 212 KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVE 291 (367)
Q Consensus 212 ~aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~ 291 (367)
++++|+++||++||++|||++|++||.+||+||||||||++|++|||+||||||||||+.|||+.|+.++|+++++|+++
T Consensus 83 ~~~~Ak~aGad~vg~edLi~kik~~~~~fD~~iAtp~~m~~l~~LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~ 162 (234)
T 2wwq_5 83 NAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVR 162 (234)
T ss_dssp CHHHHHHHTCSEECSHHHHHHHHHTCCCSSEEEECHHHHHHTTSSCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEE
T ss_pred hHHHHHHcCCCEEcHHHHHHHHHcCcccCCEEEECHHHHHHHHHHhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEeccccc
Q 017710 292 YRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 359 (367)
Q Consensus 292 ~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~~ 359 (367)
||+++.|++|++||+++|++|||.||+.+++++|.+.+|.+|+|.||+++||||||||+++|+..++.
T Consensus 163 ~r~~k~~~i~v~VG~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lksTmgp~i~id~~~~~ 230 (234)
T 2wwq_5 163 YRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 230 (234)
T ss_dssp ECCSSSCEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEESSSCCC
T ss_pred EEecCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCcccccCCeEEEEEEECCCCCCEEEehHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999987754
No 4
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=8.1e-69 Score=506.82 Aligned_cols=229 Identities=50% Similarity=0.866 Sum_probs=222.3
Q ss_pred ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCC---CCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEc
Q 017710 132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSST---KFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLA 208 (367)
Q Consensus 132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~---kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa 208 (367)
|++|||+++.+++|..+.|++.|||+++++.+.. +|+||||++|+|+|||++++++|||+|.|||++|++.+|||||
T Consensus 3 ~~~k~~~~~~~~~~~~~~y~l~eAi~~~k~~~~~~~rkF~etVel~i~L~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa 82 (242)
T 3qoy_A 3 RRGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFA 82 (242)
T ss_dssp THHHHHHHHHHTSCTTCCBCHHHHHHHHHHHHHHHCCSSCCEEEEEEEESCCTTSGGGCCEEEEECSCCCSSCCCEEEEC
T ss_pred cccHHHHHHHHhccccCccCHHHHHHHHHhhcccccCCCCCcEEEEEEeccCCCCCCCccceEecCCCCCCCCcEEEEEc
Confidence 5689999999999999999999999999998865 9999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHcCCCeeccHHHHHHH-HcCCCcccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHc
Q 017710 209 QGEKFNEAKNAGADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKK 287 (367)
Q Consensus 209 ~~e~aeeAkeaGAd~VGgeeLIekI-k~g~~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~ 287 (367)
+++++++|+++||++||++||+++| ++||.+||+||||||||++|++|||+||||||||||+.|||++|+.++|+++++
T Consensus 83 ~~~~~~eAk~aGad~vg~~dLi~ki~k~g~~~fD~~iAtpd~m~~l~~LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~ 162 (242)
T 3qoy_A 83 EGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKR 162 (242)
T ss_dssp CHHHHHHHHHTTCSEEESHHHHHHHHHHTCCCCSEEEECTTTHHHHGGGHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCEECcHHHHHHHHhCCCccCCEEEECHHHHHHHHHHhHHhccccCCCcccCCccchhHHHHHHHHhc
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEecccccc
Q 017710 288 GKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 360 (367)
Q Consensus 288 G~v~~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~~~ 360 (367)
|+++||+++.|++|++||+++|++|||.|||.+++++|.+.+|.+.++.||+++||||||||+++|+..++..
T Consensus 163 G~v~fr~~k~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lkSTmGp~i~i~~~~~~~ 235 (242)
T 3qoy_A 163 GRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVLK 235 (242)
T ss_dssp TEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEEETTSCCEEBCHHHHHH
T ss_pred CcEEEEecCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEECCCCCCEEEEhhHhCh
Confidence 9999999999999999999999999999999999999999999988888999999999999999999987753
No 5
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-58 Score=429.56 Aligned_cols=199 Identities=31% Similarity=0.536 Sum_probs=190.0
Q ss_pred CHHHHHHHHHhhc-CCCCCcCeEEEEEEc-ccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHH
Q 017710 151 DLKTAISLLKQMS-STKFTETAEAHFRLN-IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDD 228 (367)
Q Consensus 151 ~l~EAI~~lk~~~-~~kF~EsVel~I~L~-id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGgee 228 (367)
.+.|||+++++.+ .++|+||||++|+|+ |||++++|++||+|.|||++|++.+|||||+++++++|+++||+++|++|
T Consensus 7 ~~~eav~~~~~~~~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGad~vg~e~ 86 (216)
T 3j21_A 7 KIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAE 86 (216)
T ss_dssp SCCCCTTTTCCCCCCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTCCCCCTTH
T ss_pred HHHHHHHHHHHhCcccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCCCccCHHH
Confidence 5678999999988 599999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-------cCCCcccEEEeCchhHHHHhh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCCee
Q 017710 229 LIEQIK-------GGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIV 300 (367)
Q Consensus 229 LIekIk-------~g~~~FD~~IAtpdmmp~L~~-LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g~I 300 (367)
| ++|. ++|.+||+|||||+||+.|++ |||+||||||||+|+.||+ +|+.++|+++++ +++||+++.+++
T Consensus 87 L-~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv-~dv~~~v~~~k~-~v~~r~~k~~~i 163 (216)
T 3j21_A 87 L-EEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTL-TDLTPIVEKLKK-TVRIQLKNNPVV 163 (216)
T ss_dssp H-HHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCB-CSHHHHHHHHTC-EEEEEEETTTEE
T ss_pred H-HHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcH-HHHHHHHHHHHh-hceeecCCCCEE
Confidence 8 6665 357899999999999999997 9999999999999999999 999999999986 899999999999
Q ss_pred EEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEe
Q 017710 301 HIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 354 (367)
Q Consensus 301 ~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~ 354 (367)
|++||+++|++|||.|||.+++++|.+.+|.+|+ ||+++||||||||+++||
T Consensus 164 ~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~k--~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 164 HAPVGTEKMSDEEIAENIEAVLNAIIGKLERGES--QVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp ECCCEESSSCHHHHHHHHHHHHHHHHHSCCCSSC--SEEEEEEEESSSCCEECC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHhcccccc--ceEEEEEECCCCCCEEcc
Confidence 9999999999999999999999999999999998 899999999999999987
No 6
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.4e-58 Score=423.65 Aligned_cols=198 Identities=28% Similarity=0.528 Sum_probs=190.3
Q ss_pred CHHHHHH-HHHhhcCCCCCcCeEEEEEE-cccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHH
Q 017710 151 DLKTAIS-LLKQMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDD 228 (367)
Q Consensus 151 ~l~EAI~-~lk~~~~~kF~EsVel~I~L-~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGgee 228 (367)
.+.|||+ ++++.+.++|+||||++|+| ++||+++++++||+|.|||+++++.+|||||+++++++|+++||++||++|
T Consensus 5 ~l~eAv~~llk~~~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~ 84 (212)
T 2zkr_5 5 EIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADDVLDEDE 84 (212)
T ss_dssp THHHHHHHHHHTSCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSCCCCHHH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCCEeCHHH
Confidence 5789999 88998899999999999999 999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHc------CC-CcccEEEeCchhHHHHhh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCCee
Q 017710 229 LIEQIKG------GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIV 300 (367)
Q Consensus 229 LIekIk~------g~-~~FD~~IAtpdmmp~L~~-LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g~I 300 (367)
| ++|++ +| .+||+|||||+||++|++ |||+||||||||+|+.| +.|+.++|+++++| ++||+++.|++
T Consensus 85 L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~g--t~dv~~~i~~~k~~-v~~r~~k~~~i 160 (212)
T 2zkr_5 85 L-EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDP--DDDVVEVIERMKNT-VQLRSGERRTF 160 (212)
T ss_dssp H-HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCS--SSCCHHHHHHHHTE-EECCCSSSSEE
T ss_pred H-HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCC--CcCHHHHHHHHHcc-eEEEecCCCEE
Confidence 9 99987 77 899999999999999998 99999999999999999 69999999999987 99999999999
Q ss_pred EEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEe
Q 017710 301 HIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 354 (367)
Q Consensus 301 ~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~ 354 (367)
|++||+++|++|||.||+.+++++|.+.+|.+|+ ||+++||||||||+++|.
T Consensus 161 ~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~--~ik~v~lksTmgp~i~i~ 212 (212)
T 2zkr_5 161 HTRVGAEDMSAENIADNIDVILRRLHADLEKGPL--NIDTVYVKTTMGPAMEVA 212 (212)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHTTTCCCTT--TEEEEEEEESSSCCEEC-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccc--cEEEEEEECCCCCCEECC
Confidence 9999999999999999999999999999999994 899999999999999974
No 7
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=6.2e-57 Score=419.97 Aligned_cols=199 Identities=27% Similarity=0.474 Sum_probs=188.5
Q ss_pred CHHHHHH-HHHhhcCCCCCcCeEEEEEE-cccCCCCC-cceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeeccH
Q 017710 151 DLKTAIS-LLKQMSSTKFTETAEAHFRL-NIDPKYND-QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGD 227 (367)
Q Consensus 151 ~l~EAI~-~lk~~~~~kF~EsVel~I~L-~id~kK~d-~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGge 227 (367)
.+.|||+ ++++.+.++|+||||++|+| ++||+ .+ |++||+|.|||+++++.+|||||+++++++|+++||++||++
T Consensus 5 ~l~eAv~~llk~~~~~kf~etVel~i~LK~~dp~-~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~ 83 (219)
T 1i2a_A 5 ALLQAVKEARELAKPRNFTQSFEFIATLKEIDMR-KPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKE 83 (219)
T ss_dssp HHHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTT-SGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCEEECHH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEecccCCc-ccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCCEEcHH
Confidence 3689999 88888899999999999999 99999 78 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHc------CC-CcccEEEeCchhHHHHhh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCCe
Q 017710 228 DLIEQIKG------GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGI 299 (367)
Q Consensus 228 eLIekIk~------g~-~~FD~~IAtpdmmp~L~~-LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g~ 299 (367)
|| ++|++ +| .+||+||||||||++|++ |||+||||||||+|+.| +.|+.++|+++++| ++||+++.|+
T Consensus 84 ~L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~g--t~dv~~~v~~~k~~-v~~r~~k~~~ 159 (219)
T 1i2a_A 84 EI-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPA--NANIKPLVERLKKT-VVINTRDKPY 159 (219)
T ss_dssp HH-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECT--TCCCHHHHHHHHTE-EEEECTTSSE
T ss_pred HH-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCC--CccHHHHHHHHhcc-eEEEecCCCE
Confidence 99 99986 56 799999999999999998 99999999999999999 69999999999987 9999999999
Q ss_pred eEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEecc
Q 017710 300 VHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 356 (367)
Q Consensus 300 I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~ 356 (367)
+|++||+++|++|||.|||.+++++|.+.+|.+|+ ||+++||||||||+++|+.+
T Consensus 160 i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~--~ik~v~lksTmgp~i~iy~~ 214 (219)
T 1i2a_A 160 FQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLY--HIKDAYVKLTMGPAVKVKKE 214 (219)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGGG--GEEEEEEEETTSCCEECC--
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHHhCCcccc--ceEEEEEECCCCCCEEeEhh
Confidence 99999999999999999999999999999999994 89999999999999999865
No 8
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=2.5e-55 Score=408.69 Aligned_cols=195 Identities=27% Similarity=0.472 Sum_probs=185.3
Q ss_pred HHHHHHHHHhh---cCCCCCcCeEEEEEE-cccCCCCC-cceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCC-eec
Q 017710 152 LKTAISLLKQM---SSTKFTETAEAHFRL-NIDPKYND-QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGAD-LVG 225 (367)
Q Consensus 152 l~EAI~~lk~~---~~~kF~EsVel~I~L-~id~kK~d-~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd-~VG 225 (367)
+.+||+.+++. +.++|+||||++|+| ++||+ ++ |++||+|.|||+++++.+|||||+++++++|+++||+ ++|
T Consensus 8 l~~Av~~ll~~~~~~~~kf~etvel~i~LK~~dp~-~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGad~~vg 86 (217)
T 1mzp_A 8 LIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMK-KGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT 86 (217)
T ss_dssp HHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGG-GTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHHhhccccccCCCccEEEEEEecCCCCc-ccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCCCeeeC
Confidence 57899888875 468999999999999 99999 78 8999999999999999999999999999999999998 999
Q ss_pred cHHHHHHHHc------CC-CcccEEEeCchhHHHHhh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCC
Q 017710 226 GDDLIEQIKG------GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKT 297 (367)
Q Consensus 226 geeLIekIk~------g~-~~FD~~IAtpdmmp~L~~-LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~ 297 (367)
++|| ++|++ +| .+||+|||||+||++|++ |||+||||||||+|+.| +.|+.++|+++++| ++||+++.
T Consensus 87 ~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~g--t~dv~~~v~~~k~~-v~~r~~k~ 162 (217)
T 1mzp_A 87 REEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPN--TADISEYINRFKRS-VLVKTKDQ 162 (217)
T ss_dssp HHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCS--SSCCHHHHHHHHTE-EEEECSSS
T ss_pred HHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCC--CccHHHHHHHHhcc-eEEEecCC
Confidence 9999 99987 56 899999999999999998 99999999999999999 69999999999987 99999999
Q ss_pred CeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEe
Q 017710 298 GIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 354 (367)
Q Consensus 298 g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~ 354 (367)
|++|++||+++|++|||.||+.+++++|.+.+|. |+ ||+++||||||||+++|+
T Consensus 163 ~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~-~~--~ik~v~lksTmgp~i~i~ 216 (217)
T 1mzp_A 163 PQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV-ET--NLRNIYVKTTMGKAVKVK 216 (217)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC-TT--TEEEEEEEETTSCCEECC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc-ch--heEEEEEECCCCCCeeCC
Confidence 9999999999999999999999999999999999 94 899999999999999976
No 9
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.1e-52 Score=383.63 Aligned_cols=183 Identities=26% Similarity=0.430 Sum_probs=169.9
Q ss_pred eEEEEEEcccCCCCCcceeeeeecCCCCCCce-EEEEEcCc-ccHHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCch
Q 017710 171 AEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV-KVAVLAQG-EKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPD 248 (367)
Q Consensus 171 Vel~I~L~id~kK~d~~iRg~V~LPh~~gk~~-kV~Vfa~~-e~aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpd 248 (367)
||+++.|.- .+ ...++||+|.|||+++++. +|||||++ +++++|+++||++||++|||++|++||.+||+||||||
T Consensus 3 ieL~m~l~~-~r-~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~~~~fD~~iAtp~ 80 (189)
T 2ftc_A 3 LTLDMALGK-KK-NVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE 80 (189)
T ss_pred EEEEEEecC-Cc-cCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcCCccCCEEEECHH
Confidence 566666633 24 4556699999999988776 99999999 57899999999999999999999999999999999999
Q ss_pred hHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCC--eeEEeeeCCCCChhHHHHHHHHHHHHHH
Q 017710 249 MMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTG--IVHIPFGKADFSEDDLLINFLAAVKSIE 326 (367)
Q Consensus 249 mmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g--~I~v~VGk~sfs~eeL~ENI~Avl~~I~ 326 (367)
||++|++||++|||| ||||+.|||+.|+.++|+++++|. +||+++.+ ++|++||+++|++|||.||+.+++++|.
T Consensus 81 ~m~~l~~l~~~Lg~K--mP~pk~gTvt~dv~~~v~~~k~g~-~~r~~k~~~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~ 157 (189)
T 2ftc_A 81 IMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGH-EIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVC 157 (189)
T ss_pred HHHHHHHhhccccCC--CCcccCCCccccHHHHHHHHhcce-EEEeccCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999976 999999999999999999999986 99999999 9999999999999999999999999999
Q ss_pred HcCCCCCCCceeeEEEEeCCCCCcEEEeccccc
Q 017710 327 ANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 359 (367)
Q Consensus 327 ~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~~ 359 (367)
+++|++| |.||+++||||||||+++|+.++++
T Consensus 158 ~~~p~~~-g~~ik~v~lssTmgp~i~i~~~~l~ 189 (189)
T 2ftc_A 158 RHRPLNL-GPFVVRAFLRSSTSEGLLLKIDPLL 189 (189)
T ss_pred HhCchhc-CccEEEEEEECCCCCCEEEehhhcC
Confidence 9999999 8999999999999999999998864
No 10
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=1.2e-54 Score=403.61 Aligned_cols=200 Identities=23% Similarity=0.357 Sum_probs=188.0
Q ss_pred cCCHHHHHHHHHhhc---CCCCCcCeEEEEEE-cccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCee
Q 017710 149 EYDLKTAISLLKQMS---STKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLV 224 (367)
Q Consensus 149 ~Y~l~EAI~~lk~~~---~~kF~EsVel~I~L-~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~V 224 (367)
...+.|||+.+++.+ .++|+||||++|+| ++||+ +++++||+|.|||++|++.+|||||+++.+++|+++||++|
T Consensus 6 ~~~l~eav~~~~~~~~~~~~kF~etvel~i~Lk~idp~-kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~aGa~~v 84 (216)
T 3iz5_A 6 SDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKMGLDYM 84 (216)
T ss_dssp SCSSCEECTTTSSSSTTHHHHCCCSSCCEEEEEEECCC-CSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhccccccCCCccEEEEEEecccCcc-cccccceeecCCCCCCCCcEEEEEcChHhHHHHHhccCCEe
Confidence 356788999999887 78999999999999 89998 59999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHcCC------CcccEEEeCchhHHHHhh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCC
Q 017710 225 GGDDLIEQIKGGF------MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKT 297 (367)
Q Consensus 225 GgeeLIekIk~g~------~~FD~~IAtpdmmp~L~~-LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~ 297 (367)
|++||++++++++ .+||+|||||++|++|++ ||+.|||+|+||+|+++ +.|+.++|+++++ +++||+++.
T Consensus 85 g~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~--t~dv~~~v~~~k~-~v~~r~~k~ 161 (216)
T 3iz5_A 85 DVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSH--QESLEAKVNETKA-TVKFQLKKV 161 (216)
T ss_dssp EEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSC--HHHHHHHHHHTBC-CEEECTTSE
T ss_pred CHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCC--cccHHHHHHHHHh-hhheeCCCc
Confidence 9999999998775 699999999999999996 69999999999999975 5899999999986 899999999
Q ss_pred CeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEe
Q 017710 298 GIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 354 (367)
Q Consensus 298 g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~ 354 (367)
+++|++||+++|++|||.|||.+++++|.+.+|++|+ ||+++||||||||+++||
T Consensus 162 ~~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~~~~--~Iksv~iksTmgp~i~iy 216 (216)
T 3iz5_A 162 LCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKKNWQ--NVRCLYVKSTMGKRVRVF 216 (216)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHCCSSCCSC--SCSEEEECCSSCCCEEEC
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCCc--eEEEEEEECCCCCCEecC
Confidence 9999999999999999999999999999999998776 799999999999999986
No 11
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=1.6e-54 Score=402.99 Aligned_cols=199 Identities=23% Similarity=0.380 Sum_probs=185.4
Q ss_pred CCHHHHHHHHHhh----cCCCCCcCeEEEEEE-cccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCee
Q 017710 150 YDLKTAISLLKQM----SSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLV 224 (367)
Q Consensus 150 Y~l~EAI~~lk~~----~~~kF~EsVel~I~L-~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~V 224 (367)
-.+.+||+.+++. +.++|+||||++|+| ++||++ ++++||+|.|||+++++.+|||||+++.+++|+++||++|
T Consensus 7 ~~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~aGa~~v 85 (217)
T 3o58_A 7 SQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAM 85 (217)
T ss_dssp TTHHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSS-SSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTTTCCCC
T ss_pred HHHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCC-CCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHcCCCEe
Confidence 4578899888776 468999999999999 999996 9999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHcC------CCcccEEEeCchhHHHHhh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCC
Q 017710 225 GGDDLIEQIKGG------FMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKT 297 (367)
Q Consensus 225 GgeeLIekIk~g------~~~FD~~IAtpdmmp~L~~-LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~ 297 (367)
|++||+++++++ +.+||+||||||||++|++ ||+.|||+|+||+|+ |++.|+.++|+++++ +++||+++.
T Consensus 86 g~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~--~vt~dv~~~v~~~k~-~v~~r~~k~ 162 (217)
T 3o58_A 86 SVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPV--SHNDDLYGKVTDVRS-TIKFQLKKV 162 (217)
T ss_dssp CSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCS--CTTTCSSSGGGGTTS-CCSCCCCSS
T ss_pred CHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCc--CCchhHHHHHHHHhc-eEEEEeCCC
Confidence 999999987766 3799999999999999986 888888899999999 588999999999986 899999999
Q ss_pred CeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEe
Q 017710 298 GIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 354 (367)
Q Consensus 298 g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~ 354 (367)
|++|++||+++|++|||.|||.+++++|.+.+|++|+ ||+++||||||||+++||
T Consensus 163 ~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk~~~--~iksi~lksTmgp~i~iy 217 (217)
T 3o58_A 163 LCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQ--NVGSLVVKSSMGPAFRLY 217 (217)
T ss_dssp SCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSSCSC--CCSCCCCCSSSSCSCCC-
T ss_pred CEEEEeeccCCCCHHHHHHHHHHHHHHHHHhcccCCc--eEEEEEEECCCCCCEecC
Confidence 9999999999999999999999999999999998876 799999999999999986
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=100.00 E-value=7.5e-39 Score=279.36 Aligned_cols=135 Identities=43% Similarity=0.786 Sum_probs=130.1
Q ss_pred ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcc
Q 017710 132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 211 (367)
Q Consensus 132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e 211 (367)
|++|||+++.++++..+.|++.|||+++++.+.++|+||||++|+||+||++.||++||+|.|||+
T Consensus 2 k~~k~~~~~~~kv~~~~~y~~~eAi~~~k~~~~~kF~EtVel~i~L~vDprk~dq~vrgtV~LP~g-------------- 67 (137)
T 2ov7_A 2 KHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG-------------- 67 (137)
T ss_dssp --CHHHHHHHTTSCTTCCBCHHHHHHHHHHTCCSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS--------------
T ss_pred CcCHHHHHHHHhcCcccccCHHHHHHHHHhcccCCCCccEEEEEEeCCCCccccceeeEEEEcCCC--------------
Confidence 568999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceE
Q 017710 212 KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVE 291 (367)
Q Consensus 212 ~aeeAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~ 291 (367)
|+++
T Consensus 68 ----------------------------------------------------------------------------g~v~ 71 (137)
T 2ov7_A 68 ----------------------------------------------------------------------------GRIE 71 (137)
T ss_dssp ----------------------------------------------------------------------------CEEE
T ss_pred ----------------------------------------------------------------------------CeEE
Confidence 8999
Q ss_pred EEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEecc
Q 017710 292 YRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 356 (367)
Q Consensus 292 ~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~ 356 (367)
||+|+.|++|++||+++|++|||.||+.+++++|.+.+|.+|+|.||+++|||||||||++|+..
T Consensus 72 fr~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~~ik~v~issTMGp~i~id~~ 136 (137)
T 2ov7_A 72 FRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPH 136 (137)
T ss_dssp EECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEBCTT
T ss_pred EEECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 13
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=55.61 E-value=6.9 Score=35.69 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=19.6
Q ss_pred hhhccccCCCCCCCCCCCCCcCCC
Q 017710 254 ASLGKILGPRGLMPNPKAGTVTTN 277 (367)
Q Consensus 254 ~~LGkiLGPKGLMPnpK~GTVt~D 277 (367)
+.|||+||| +|||+.|.++....
T Consensus 117 ~~l~riLG~-~l~p~gk~P~p~~~ 139 (216)
T 3iz5_A 117 KQIPRLLGP-GLNKAGKFPTLVSH 139 (216)
T ss_dssp HHHHHHHTT-TCSCCTTTTCBCSC
T ss_pred HHHHHHhcc-cccccCCcCCCcCC
Confidence 579999998 89999999987653
No 14
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=28.89 E-value=16 Score=32.86 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.4
Q ss_pred ceEEEEEcCcccHHHHHHcCCCeecc
Q 017710 201 SVKVAVLAQGEKFNEAKNAGADLVGG 226 (367)
Q Consensus 201 ~~kV~Vfa~~e~aeeAkeaGAd~VGg 226 (367)
.+|||=+++.++++.|.++|||++|-
T Consensus 3 ~vKICGit~~eda~~a~~~GaD~iGf 28 (205)
T 1nsj_A 3 RVKICGITNLEDALFSVESGADAVGF 28 (205)
T ss_dssp EEEECCCCSHHHHHHHHHHTCSEEEE
T ss_pred cEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999999994
No 15
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=28.85 E-value=7.2 Score=35.55 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=10.3
Q ss_pred hhccccCCCCCCCCCCCCCc
Q 017710 255 SLGKILGPRGLMPNPKAGTV 274 (367)
Q Consensus 255 ~LGkiLGPKGLMPnpK~GTV 274 (367)
.|||+||| +|||+.|.++.
T Consensus 119 ~l~riLG~-~l~p~gk~P~p 137 (217)
T 3o58_A 119 QVPRLLGP-QLSKAGKFPTP 137 (217)
T ss_dssp CCSSSSSS-TTHHHHCSSCC
T ss_pred HHHHHhhh-hhcccCCcCCC
Confidence 34555665 56665555543
No 16
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=28.55 E-value=16 Score=32.82 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=23.3
Q ss_pred ceEEEEEcCcccHHHHHHcCCCeecc
Q 017710 201 SVKVAVLAQGEKFNEAKNAGADLVGG 226 (367)
Q Consensus 201 ~~kV~Vfa~~e~aeeAkeaGAd~VGg 226 (367)
.+|||=+++.+.++.|.++|||++|-
T Consensus 2 ~vKICGit~~eda~~a~~~GaD~iGf 27 (203)
T 1v5x_A 2 RVKICGITRLEDALLAEALGAFALGF 27 (203)
T ss_dssp EEEECCCCCHHHHHHHHHHTCSEEEE
T ss_pred cEEEcCCCcHHHHHHHHHcCCCEEEE
Confidence 36899999989999999999999994
No 17
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=27.62 E-value=22 Score=28.92 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=37.4
Q ss_pred CCceEEEEEcCcc---------cHHHHHHcCCCee----ccHHHHHHHHcCCCcccEEEeCchhHHHHhhhccccCCC
Q 017710 199 GKSVKVAVLAQGE---------KFNEAKNAGADLV----GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPR 263 (367)
Q Consensus 199 gk~~kV~Vfa~~e---------~aeeAkeaGAd~V----GgeeLIekIk~g~~~FD~~IAtpdmmp~L~~LGkiLGPK 263 (367)
.++.+|+++|.+- ..+.|++.|.++- +..+ +..-..+||++|..|.+--.+..+-+...+.
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~----~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~ 77 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA----HYDIMGVYDLIILAPQVRSYYREMKVDAERL 77 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS----CTTTGGGCSEEEECGGGGGGHHHHHHHHTTT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH----HHhhccCCCEEEEChHHHHHHHHHHHHhhhc
Confidence 4677899999751 1255777787622 2222 2223457999999998876665555555443
No 18
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=24.71 E-value=37 Score=27.76 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.4
Q ss_pred EEEEeCCCCCcEEEecc
Q 017710 340 SAYICSSMGPSIRLNIK 356 (367)
Q Consensus 340 si~IsSTMGPsi~I~~~ 356 (367)
.|||+|++|| |.+++.
T Consensus 88 qi~LkS~~GP-IdV~L~ 103 (106)
T 2aze_B 88 QISLKSKQGP-IDVFLC 103 (106)
T ss_dssp EEEEECSSSC-CEEECC
T ss_pred EEEEECCCCC-EEEEEe
Confidence 8999999997 777664
No 19
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.85 E-value=18 Score=33.77 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=18.2
Q ss_pred CcCeEEEEEEcccCCCCCcceeeeeecCCCCC
Q 017710 168 TETAEAHFRLNIDPKYNDQQLRATVSLPKGTG 199 (367)
Q Consensus 168 ~EsVel~I~L~id~kK~d~~iRg~V~LPh~~g 199 (367)
-.+|.+++++.= .+..-|.|.|.|.==++-|
T Consensus 146 GDtV~V~vkI~E-~KeRiQ~FeGVVIarr~~G 176 (233)
T 3bbo_R 146 GDIVQIRLEVPE-NKRRLSVYKGIVISRQNAG 176 (233)
T ss_dssp CSCCCCCCCBCC-CSSCCSCCBCCCCCSCBCC
T ss_pred CCEEEEEEEecc-CcceecceEEEEEEEeCCC
Confidence 357777766532 3434578888776544433
No 20
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=21.25 E-value=29 Score=31.82 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=21.1
Q ss_pred cCCCCCCceEEEEEcCcccHHHHHHcCCCeecc
Q 017710 194 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGG 226 (367)
Q Consensus 194 LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGg 226 (367)
+|++..=.+|||=+++.+.++ |.++|||++|.
T Consensus 15 ~p~~~~M~VKICGit~~ed~~-a~~~gaD~iGf 46 (228)
T 4aaj_A 15 VPRGSHMFVKICGIKSLEELE-IVEKHADATGV 46 (228)
T ss_dssp -----CCEEEECCCCSHHHHH-HHHTTCSEEEE
T ss_pred CCCCCceEEEECCCCcHHHHH-HHHcCCCEEEE
Confidence 455544458999999877775 56899998883
Done!