Query 017713
Match_columns 367
No_of_seqs 243 out of 1769
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1485 Mitochondrial Fe2+ tra 100.0 3.4E-61 7.3E-66 454.4 31.9 336 31-366 68-411 (412)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 4.5E-51 9.7E-56 385.2 36.9 283 70-359 6-294 (304)
3 PRK09509 fieF ferrous iron eff 100.0 4.2E-50 9.1E-55 380.2 38.1 276 74-357 8-289 (299)
4 PRK03557 zinc transporter ZitB 100.0 5.2E-49 1.1E-53 374.2 34.1 277 75-360 17-297 (312)
5 TIGR01297 CDF cation diffusion 100.0 2.9E-46 6.2E-51 349.2 30.7 261 89-355 2-268 (268)
6 COG1230 CzcD Co/Zn/Cd efflux s 100.0 1.6E-43 3.5E-48 326.6 31.5 274 73-356 18-295 (296)
7 PF01545 Cation_efflux: Cation 100.0 1E-43 2.2E-48 334.6 14.8 273 79-357 1-283 (284)
8 KOG1484 Putative Zn2+ transpor 100.0 7.7E-29 1.7E-33 227.6 25.7 271 75-356 33-348 (354)
9 KOG1482 Zn2+ transporter [Inor 100.0 5.4E-29 1.2E-33 231.9 20.8 278 73-360 69-371 (379)
10 KOG1483 Zn2+ transporter ZNT1 100.0 7.4E-30 1.6E-34 238.4 14.0 269 78-356 10-371 (404)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 4.3E-28 9.2E-33 214.4 22.1 275 71-353 14-307 (314)
12 KOG2802 Membrane protein HUEL 99.9 1.1E-23 2.5E-28 194.4 14.4 255 13-324 157-436 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.5 2.1E-06 4.6E-11 81.5 12.3 97 75-179 119-215 (304)
14 PRK09509 fieF ferrous iron eff 98.2 1.3E-05 2.8E-10 76.2 12.3 93 77-177 119-211 (299)
15 TIGR01297 CDF cation diffusion 98.2 1.1E-05 2.3E-10 75.3 11.0 93 77-177 98-190 (268)
16 PRK03557 zinc transporter ZitB 97.6 0.00074 1.6E-08 64.6 11.2 89 80-176 129-217 (312)
17 KOG1485 Mitochondrial Fe2+ tra 97.2 0.001 2.2E-08 64.5 7.6 95 77-179 231-325 (412)
18 PF01545 Cation_efflux: Cation 95.6 0.014 2.9E-07 54.8 4.4 92 79-177 109-203 (284)
19 COG1230 CzcD Co/Zn/Cd efflux s 93.7 0.5 1.1E-05 44.6 9.6 92 76-176 128-219 (296)
20 PF07444 Ycf66_N: Ycf66 protei 89.6 5.7 0.00012 30.1 9.4 47 219-265 32-81 (84)
21 PF03780 Asp23: Asp23 family; 88.3 6.9 0.00015 30.7 9.9 53 301-353 49-105 (108)
22 COG1183 PssA Phosphatidylserin 86.7 10 0.00022 34.7 11.0 86 186-273 36-121 (234)
23 PF14535 AMP-binding_C_2: AMP- 85.5 7.9 0.00017 29.9 8.5 71 283-355 7-79 (96)
24 TIGR02898 spore_YhcN_YlaJ spor 84.7 8 0.00017 33.1 8.8 70 281-356 55-125 (158)
25 PF09580 Spore_YhcN_YlaJ: Spor 80.4 8.2 0.00018 33.4 7.5 68 280-355 75-143 (177)
26 COG4858 Uncharacterized membra 73.4 64 0.0014 28.3 13.1 101 156-260 102-208 (226)
27 KOG1484 Putative Zn2+ transpor 73.3 42 0.00092 32.2 10.4 87 188-274 37-131 (354)
28 TIGR00473 pssA CDP-diacylglyce 73.2 56 0.0012 27.6 12.3 82 187-271 22-103 (151)
29 PF10934 DUF2634: Protein of u 71.2 19 0.00042 28.8 6.8 50 269-319 53-107 (112)
30 PF01883 DUF59: Domain of unkn 65.8 13 0.00029 26.7 4.5 49 299-350 23-72 (72)
31 TIGR02945 SUF_assoc FeS assemb 62.1 70 0.0015 24.6 9.1 50 309-361 37-86 (99)
32 COG2921 Uncharacterized conser 58.4 61 0.0013 24.7 6.8 64 273-345 21-86 (90)
33 cd04870 ACT_PSP_1 CT domains f 55.2 42 0.00092 24.3 5.6 58 278-341 9-66 (75)
34 COG1824 Permease, similar to c 54.2 1.6E+02 0.0035 26.2 17.0 154 74-232 25-195 (203)
35 PF00873 ACR_tran: AcrB/AcrD/A 53.8 32 0.00068 38.5 6.8 44 311-354 559-602 (1021)
36 COG0779 Uncharacterized protei 53.6 76 0.0016 27.0 7.5 49 298-346 24-72 (153)
37 PRK00907 hypothetical protein; 53.3 72 0.0016 24.6 6.7 65 272-345 22-88 (92)
38 KOG1482 Zn2+ transporter [Inor 52.4 41 0.0009 32.7 6.3 68 103-176 224-291 (379)
39 cd04900 ACT_UUR-like_1 ACT dom 52.2 78 0.0017 22.7 6.6 42 278-322 11-52 (73)
40 PF13710 ACT_5: ACT domain; PD 51.3 84 0.0018 22.1 6.4 61 279-348 3-63 (63)
41 PRK14637 hypothetical protein; 50.6 66 0.0014 27.2 6.7 70 281-353 10-79 (151)
42 COG3978 Acetolactate synthase 50.3 85 0.0019 23.5 6.3 67 275-351 10-76 (86)
43 PLN02601 beta-carotene hydroxy 49.2 2.3E+02 0.0049 26.5 10.5 16 220-235 178-193 (303)
44 PRK14635 hypothetical protein; 48.9 1.3E+02 0.0027 25.8 8.3 44 298-341 21-68 (162)
45 COG2098 Uncharacterized protei 48.9 28 0.0006 27.6 3.7 37 324-360 35-71 (116)
46 TIGR03406 FeS_long_SufT probab 47.7 91 0.002 27.1 7.3 43 313-356 115-157 (174)
47 TIGR03341 YhgI_GntY IscR-regul 46.2 1.5E+02 0.0033 26.0 8.6 75 278-354 103-182 (190)
48 PRK11152 ilvM acetolactate syn 45.3 1.2E+02 0.0027 22.4 6.9 63 278-350 13-75 (76)
49 PRK14634 hypothetical protein; 44.3 1.7E+02 0.0038 24.8 8.4 49 298-346 23-73 (155)
50 PRK14647 hypothetical protein; 44.1 1.9E+02 0.0041 24.6 8.6 48 298-345 24-71 (159)
51 PF09685 Tic20: Tic20-like pro 44.1 1.5E+02 0.0032 22.9 8.5 24 116-139 81-104 (109)
52 COG3696 Putative silver efflux 43.7 3.7E+02 0.0081 29.7 12.2 261 76-352 359-656 (1027)
53 PF02790 COX2_TM: Cytochrome C 42.6 1.3E+02 0.0029 22.0 6.8 33 132-164 50-82 (84)
54 PRK14646 hypothetical protein; 41.2 1.4E+02 0.0031 25.3 7.3 48 298-345 23-72 (155)
55 COG4956 Integral membrane prot 40.8 3.3E+02 0.0073 26.0 15.4 65 207-275 67-140 (356)
56 TIGR03221 muco_delta muconolac 39.1 54 0.0012 25.2 4.0 24 311-334 2-25 (90)
57 PF09877 DUF2104: Predicted me 38.8 52 0.0011 25.6 3.8 31 122-159 67-97 (99)
58 PRK14640 hypothetical protein; 38.0 2.5E+02 0.0053 23.7 8.3 48 298-345 22-69 (152)
59 COG0841 AcrB Cation/multidrug 37.0 3.1E+02 0.0068 30.8 11.0 65 278-344 55-120 (1009)
60 PRK14638 hypothetical protein; 36.9 2.6E+02 0.0056 23.6 8.3 45 298-342 24-69 (150)
61 PRK14632 hypothetical protein; 35.9 2E+02 0.0044 24.8 7.6 48 298-346 24-71 (172)
62 PF11712 Vma12: Endoplasmic re 35.9 1.2E+02 0.0026 25.2 6.1 25 80-104 78-102 (142)
63 cd04888 ACT_PheB-BS C-terminal 35.9 1.1E+02 0.0024 21.6 5.3 63 279-350 11-74 (76)
64 PRK14639 hypothetical protein; 35.3 1.9E+02 0.0041 24.1 7.1 45 298-342 13-57 (140)
65 PRK14641 hypothetical protein; 35.1 3E+02 0.0065 23.9 8.7 44 298-341 25-68 (173)
66 PRK00092 ribosome maturation p 32.6 3E+02 0.0065 23.1 8.8 59 281-342 9-67 (154)
67 PF11654 DUF2665: Protein of u 32.2 41 0.0009 22.5 2.1 22 242-263 4-25 (47)
68 cd04928 ACT_TyrKc Uncharacteri 31.8 2E+02 0.0043 20.8 6.9 57 278-339 11-67 (68)
69 PRK14633 hypothetical protein; 31.3 3.2E+02 0.0069 23.0 8.4 61 281-345 6-66 (150)
70 COG2151 PaaD Predicted metal-s 31.0 2.8E+02 0.006 22.2 7.3 30 327-356 64-93 (111)
71 COG1302 Uncharacterized protei 30.9 3.1E+02 0.0067 22.7 9.4 87 262-354 23-113 (131)
72 COG4035 Predicted membrane pro 30.6 70 0.0015 24.6 3.3 42 111-159 62-104 (108)
73 PRK14856 nhaA pH-dependent sod 30.4 5.8E+02 0.013 25.7 13.0 88 146-239 67-154 (438)
74 PF13291 ACT_4: ACT domain; PD 30.2 2.1E+02 0.0046 20.6 6.1 60 279-348 17-78 (80)
75 PRK00106 hypothetical protein; 30.1 94 0.002 32.1 5.3 62 282-351 460-525 (535)
76 PF02426 MIase: Muconolactone 29.0 1.1E+02 0.0025 23.5 4.4 28 311-338 3-30 (91)
77 PRK00341 hypothetical protein; 28.6 2.7E+02 0.0057 21.4 6.4 63 273-345 23-87 (91)
78 PRK09577 multidrug efflux prot 28.4 1.3E+02 0.0028 33.9 6.4 40 312-351 568-607 (1032)
79 cd04871 ACT_PSP_2 ACT domains 28.1 1.3E+02 0.0028 22.5 4.5 66 272-341 4-75 (84)
80 TIGR03319 YmdA_YtgF conserved 28.0 1.7E+02 0.0036 30.2 6.7 63 282-351 439-504 (514)
81 PRK10503 multidrug efflux syst 27.6 1.4E+02 0.003 33.7 6.4 43 311-353 568-610 (1040)
82 PRK10334 mechanosensitive chan 27.5 5.2E+02 0.011 24.2 10.7 63 278-341 197-263 (286)
83 PRK10614 multidrug efflux syst 27.3 5.4E+02 0.012 29.0 11.0 64 278-343 56-120 (1025)
84 PRK02047 hypothetical protein; 27.1 2.9E+02 0.0062 21.1 7.0 61 277-345 25-87 (91)
85 PRK11023 outer membrane lipopr 27.1 1.2E+02 0.0026 26.6 4.9 70 271-355 80-152 (191)
86 PF05105 Phage_holin_4: Holin 26.8 3.3E+02 0.0071 21.7 13.0 39 246-286 74-112 (118)
87 PF11166 DUF2951: Protein of u 26.2 3.1E+02 0.0067 21.2 6.9 32 18-50 22-53 (98)
88 TIGR00915 2A0602 The (Largely 25.6 7.5E+02 0.016 27.9 11.8 66 278-344 54-120 (1044)
89 PRK10503 multidrug efflux syst 25.6 3.2E+02 0.007 30.8 8.9 65 278-343 65-129 (1040)
90 PRK02507 proton extrusion prot 25.5 6.9E+02 0.015 25.0 17.0 51 75-125 295-350 (422)
91 PRK04998 hypothetical protein; 25.3 3E+02 0.0066 20.8 6.6 62 273-345 21-84 (88)
92 KOG3491 Predicted membrane pro 25.3 1.4E+02 0.0031 20.9 3.8 13 130-142 28-40 (65)
93 COG1279 Lysine efflux permease 24.5 3.3E+02 0.0071 24.3 6.9 61 211-271 34-94 (202)
94 PF01390 SEA: SEA domain; Int 24.4 2.4E+02 0.0051 21.5 5.7 44 297-341 51-95 (107)
95 cd02411 archeal_30S_S3_KH K ho 24.3 3E+02 0.0064 20.5 5.9 55 297-352 26-80 (85)
96 smart00267 GGDEF diguanylate c 24.2 3.6E+02 0.0077 21.2 8.5 63 273-344 52-114 (163)
97 cd04875 ACT_F4HF-DF N-terminal 24.2 2.7E+02 0.0058 19.7 6.8 46 278-326 9-57 (74)
98 PRK11190 Fe/S biogenesis prote 23.8 5.1E+02 0.011 22.8 8.9 71 278-349 104-179 (192)
99 PF13273 DUF4064: Protein of u 23.4 3.4E+02 0.0074 20.7 10.2 30 72-101 2-31 (100)
100 PRK15031 5-carboxymethyl-2-hyd 23.4 4.2E+02 0.009 21.7 9.1 80 271-352 11-107 (126)
101 COG4669 EscJ Type III secretor 22.6 1.4E+02 0.0029 27.4 4.3 28 329-356 108-135 (246)
102 PF04456 DUF503: Protein of un 22.5 2.2E+02 0.0047 21.8 4.9 42 312-355 4-45 (90)
103 PF00403 HMA: Heavy-metal-asso 22.1 90 0.002 21.3 2.5 25 328-352 9-33 (62)
104 PF02038 ATP1G1_PLM_MAT8: ATP1 21.6 1.3E+02 0.0029 20.4 3.0 28 136-164 6-33 (50)
105 PRK14630 hypothetical protein; 21.2 4.9E+02 0.011 21.7 8.8 58 281-341 10-67 (143)
106 TIGR02159 PA_CoA_Oxy4 phenylac 21.2 4.5E+02 0.0098 22.0 7.0 29 327-356 40-68 (146)
107 PRK12704 phosphodiesterase; Pr 21.1 1.6E+02 0.0035 30.3 5.1 62 282-351 445-510 (520)
108 PHA02975 hypothetical protein; 20.9 3.4E+02 0.0073 19.7 7.1 60 147-207 4-66 (69)
109 PRK11179 DNA-binding transcrip 20.9 2.8E+02 0.0061 23.1 5.8 65 279-355 80-144 (153)
110 KOG1483 Zn2+ transporter ZNT1 20.8 4.4E+02 0.0096 26.0 7.6 66 209-274 32-105 (404)
111 PF11381 DUF3185: Protein of u 20.8 3.1E+02 0.0067 19.3 6.1 46 147-197 5-53 (59)
112 PRK02289 4-oxalocrotonate taut 20.5 2.5E+02 0.0054 19.3 4.5 38 315-352 4-43 (60)
113 COG4858 Uncharacterized membra 20.3 6.1E+02 0.013 22.4 12.1 17 160-176 173-189 (226)
114 PF02576 DUF150: Uncharacteris 20.1 2.8E+02 0.006 22.9 5.5 45 297-341 11-55 (141)
115 PRK10555 aminoglycoside/multid 20.1 3.7E+02 0.008 30.3 8.0 67 278-346 54-123 (1037)
116 MTH00140 COX2 cytochrome c oxi 20.0 5.3E+02 0.012 23.2 7.8 29 135-163 52-80 (228)
117 PRK10555 aminoglycoside/multid 20.0 4.8E+02 0.01 29.4 8.9 68 281-350 107-177 (1037)
No 1
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-61 Score=454.42 Aligned_cols=336 Identities=50% Similarity=0.758 Sum_probs=304.4
Q ss_pred CchhHHHHHHHHHHHHhhhhchHHHhcCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhH
Q 017713 31 EDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTK-EERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIAST 109 (367)
Q Consensus 31 ~~~~~~~y~~q~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~ada 109 (367)
.++..+||..|.+..+.+.+..+..+++...+..+ ++.+.....++++.|+++++|+.++++|+++|+.+||+|++||+
T Consensus 68 e~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsa 147 (412)
T KOG1485|consen 68 EDNVSEFYSSQKSLLQKFVEHSHTHEHGFVSEALELEKLQILKNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASA 147 (412)
T ss_pred hhccchHHHHHHHHhcccccccccccCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33445899999999999988888877765554433 23333445679999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc-cccc-----c
Q 017713 110 LDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQF-NLTK-----E 183 (367)
Q Consensus 110 l~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~-~~~~-----~ 183 (367)
+||+.|+++++++|++.+.++|+++++||+|++|+|+++.+.++++|.++|++++.++++++.+|.... ...+ .
T Consensus 148 vdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~ 227 (412)
T KOG1485|consen 148 VDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFI 227 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhcccccccccCchhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999998833211 1111 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhHhHHHhhhHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH
Q 017713 184 QEQWVVGIMLSVTLVKLLLVVYCRAFTN-EIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWS 262 (367)
Q Consensus 184 ~~~~~~~i~~~~~~v~~~l~~~~~~~~s-~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~~~~~D~i~aiii~~~i~~~~~ 262 (367)
...|++++++....+++.++++|++.++ ..++|.++|||+|+++|+++++++.++.+++||+||+||++++.+++++|.
T Consensus 228 ~a~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~~~lDP~gailVS~~ii~t~~ 307 (412)
T KOG1485|consen 228 NALWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYNYWLDPIGAILVSTYIIYTGG 307 (412)
T ss_pred chhhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccchhhhhhheehhhhhh
Confidence 2238899999999999999999998776 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017713 263 MTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 342 (367)
Q Consensus 263 ~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~ 342 (367)
++..+++..|+|+++|||.++++.+.++++.+.++.++++++|+.|..++||+|+++|++++++++|++.+.+|++|+.+
T Consensus 308 ~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l 387 (412)
T KOG1485|consen 308 RTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELL 387 (412)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecccCCCCcCcccC
Q 017713 343 PEIERAFVHLDYEYTHRPEHAQAH 366 (367)
Q Consensus 343 ~~v~~v~Vhvd~~~~~~~eh~~~~ 366 (367)
|+++|+|||+||+++|+|+|+..+
T Consensus 388 ~ever~fvh~d~e~~hr~~~~~~~ 411 (412)
T KOG1485|consen 388 PEVERAFVHIDYEFLHRPHHEHLS 411 (412)
T ss_pred chheeeeeecCccccCCchHhhcc
Confidence 999999999999999999998654
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-51 Score=385.18 Aligned_cols=283 Identities=24% Similarity=0.426 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHH
Q 017713 70 NLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGI 149 (367)
Q Consensus 70 ~~~~~~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~ 149 (367)
+..+..+++.++++++|++++++|+++|+++||.||+||++||++|++++++.+++.+.++||+|++|||||+|+|++++
T Consensus 6 ~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~s 85 (304)
T COG0053 6 ERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLAS 85 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH----HhcChhhhHhHHHhhhHH
Q 017713 150 LVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDV 225 (367)
Q Consensus 150 li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~----~~~s~~l~a~~~~~~~D~ 225 (367)
++.+++++++|++++++++.++++|.+. ....+++++++++.+++.++++|.+ |.+|+.+.|++.|+++|+
T Consensus 86 l~~~~~i~~~g~~i~~~a~~~~~~~~~~-----~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~ 160 (304)
T COG0053 86 LIVSILIFAAGFEILLEAIKRLISPQPV-----EPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDV 160 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHH
Confidence 9999999999999999999999997662 3447889999999999999999986 578999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh-hccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEE
Q 017713 226 ITNIIGLVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRA 304 (367)
Q Consensus 226 ~~~~~~i~~~~~~~~~~-~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~ 304 (367)
+++ ++++.++++.+++ ||+||+++++|+++|++.+++++++++..|+|+++|++..+++++++.+ .|+|.++|++|+
T Consensus 161 ~ts-~~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~-~~~V~~v~~lr~ 238 (304)
T COG0053 161 LTS-LAVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILS-VPGVKGVHDLRT 238 (304)
T ss_pred HHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhc-CCcceeeeccee
Confidence 997 5666666688877 7999999999999999999999999999999999999999999999975 899999999999
Q ss_pred EEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEeecccCCC
Q 017713 305 YTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYTHR 359 (367)
Q Consensus 305 ~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~-~~~v~~v~Vhvd~~~~~~ 359 (367)
++.|+.+++++|+++||+++++++|+|++++++++++ .|++.+++||+||.....
T Consensus 239 R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~ 294 (304)
T COG0053 239 RKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKE 294 (304)
T ss_pred eeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 9999999999999999999999999999999999986 555999999999976543
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=4.2e-50 Score=380.24 Aligned_cols=276 Identities=19% Similarity=0.254 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHH
Q 017713 74 SETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFA 153 (367)
Q Consensus 74 ~~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~ 153 (367)
..+++.++++++|++++++|+++|+++||+||+||++||+.|++++++++++.+.++||++++|||||+|+|++++++.+
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH----HhcChhhhHhHHHhhhHHHHHH
Q 017713 154 SVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDVITNI 229 (367)
Q Consensus 154 ~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~----~~~s~~l~a~~~~~~~D~~~~~ 229 (367)
++++++++++++||++++++|++. ....+++++++.++++|.+++++++ +.+|+.+++++.|+++|++.|
T Consensus 88 ~~l~~~~~~~~~esi~~l~~~~~~-----~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s- 161 (299)
T PRK09509 88 MFISGSALFLFLTGIQHLISPTPM-----NDPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMN- 161 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC-----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999987662 2234566778888888988877765 467899999999999999998
Q ss_pred HHHHHHHHHhhhh-hccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeC
Q 017713 230 IGLVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFG 308 (367)
Q Consensus 230 ~~i~~~~~~~~~~-~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G 308 (367)
++++.++++.+++ ||+||++++++++++++.++++++++...|+|+++|++..++|++.+.+ +|+|.++|++|+|+.|
T Consensus 162 ~~vl~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~-~~~v~~v~~l~~~~~G 240 (299)
T PRK09509 162 GAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRTRQSG 240 (299)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh-CCCCcCceeeeeEeeC
Confidence 4566666666665 6999999999999999999999999999999999999999999999965 8999999999999999
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEeecccC
Q 017713 309 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYT 357 (367)
Q Consensus 309 ~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~-~~~v~~v~Vhvd~~~~ 357 (367)
+++++++||++|++++++|+|++++++|++|++ +|++ +++||+||...
T Consensus 241 ~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~-~v~ihveP~~~ 289 (299)
T PRK09509 241 PTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGS-DVIIHQDPCSV 289 (299)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEEeCCCCC
Confidence 999999999999999999999999999999975 6655 69999999653
No 4
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=5.2e-49 Score=374.23 Aligned_cols=277 Identities=17% Similarity=0.227 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHH
Q 017713 75 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFAS 154 (367)
Q Consensus 75 ~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~ 154 (367)
.+|.+++++++|++++++|+++|+++||.|++||++||++|++++++++++.+.++||++++|||||+|+|++++++.++
T Consensus 17 ~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~ 96 (312)
T PRK03557 17 NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAI 96 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH---hcChhhhHhHHHhhhHHHHHHHH
Q 017713 155 VMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA---FTNEIVKAYAQDHFFDVITNIIG 231 (367)
Q Consensus 155 ~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~---~~s~~l~a~~~~~~~D~~~~~~~ 231 (367)
+++++++++++||++++++|.+ . ...+++++++.++++|.+++++.++ .+|..+++++.|+++|+++|+++
T Consensus 97 ~l~~~~~~i~~eai~~l~~~~~---~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~v 170 (312)
T PRK03557 97 ALVVITILIVWEAIERFRTPRP---V---AGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGA 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCcc---c---cchHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997754 1 1245667777888888888777654 45678999999999999998666
Q ss_pred HHHHHHHhhhh-hccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCe
Q 017713 232 LVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH 310 (367)
Q Consensus 232 i~~~~~~~~~~-~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~ 310 (367)
++++.++.+++ +|+||++++++++++++.+++++++++..|+|.+||++..+++++.+.+..|+|.++|++|+|+.|++
T Consensus 171 lv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~ 250 (312)
T PRK03557 171 IIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEK 250 (312)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCe
Confidence 66666665554 58999999999999999999999999999999888877788998877556899999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecccCCCC
Q 017713 311 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 360 (367)
Q Consensus 311 ~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~~~~~ 360 (367)
+++++|+++|+++ +.|+++++++++|++.+++.+++||+||+..+.+
T Consensus 251 ~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~ 297 (312)
T PRK03557 251 PVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGP 297 (312)
T ss_pred EEEEEEEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCc
Confidence 9999999999875 6789999999999876789999999999865543
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=2.9e-46 Score=349.19 Aligned_cols=261 Identities=21% Similarity=0.363 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017713 89 LFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESL 168 (367)
Q Consensus 89 l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~~~~~~i~~esi 168 (367)
++++|+++|+.+||.+|+||++||+.|++++++++++.+.++|+++++||||++|+|++++++.|+++++.+++++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH----hcChhhhHhHHHhhhHHHHHHHHHHHHHHHhhhhhc
Q 017713 169 RTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDW 244 (367)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~~~~ 244 (367)
+++++|++. ....+++.++..++++|.++++++++ .+|+.+++++.|+++|++.+..++++..+..+.++|
T Consensus 82 ~~l~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~~~~ 156 (268)
T TIGR01297 82 ERLINPEPE-----IDGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHW 156 (268)
T ss_pred HHHhCCCCc-----ccchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987642 23356777888889999999988875 568899999999999999985444444444333579
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCC-eEEEEEEEEeCCCC
Q 017713 245 MDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS-HYFVEVDIVLPASM 323 (367)
Q Consensus 245 ~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~-~~~vev~I~~~~~~ 323 (367)
+||++++++++++++.++++++++...|+|.+||++..+++++.+. +.|+|.++|++|+|+.|+ ++++++||++|+++
T Consensus 157 ~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~-~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~ 235 (268)
T TIGR01297 157 ADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAIL-SIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDL 235 (268)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHh-cCCCcccceEeEEEEcCCCCEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999996 589999999999999999 79999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-cCCCccEEEEEeecc
Q 017713 324 PLQEAHDIGESLQEKLE-LLPEIERAFVHLDYE 355 (367)
Q Consensus 324 ~l~~~~~i~~~l~~~l~-~~~~v~~v~Vhvd~~ 355 (367)
+++|+|++++++|++++ +.|++++++||+||+
T Consensus 236 ~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 236 DLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 99999999999999996 579999999999983
No 6
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=326.62 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHH
Q 017713 73 RSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVF 152 (367)
Q Consensus 73 ~~~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~ 152 (367)
.+.+|.+++++.+|+.++++|+++|+++||+||+||++|++.|+++.++.+++.+.++|+++.+|||||.|+|.++++++
T Consensus 18 ~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~n 97 (296)
T COG1230 18 PRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLN 97 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHh--cChhhhHhHHHhhhHHHHHHH
Q 017713 153 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAF--TNEIVKAYAQDHFFDVITNII 230 (367)
Q Consensus 153 ~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~--~s~~l~a~~~~~~~D~~~~~~ 230 (367)
+++++..++++++|+++||++|.+ .+...|++++++++++|.++.+..++- ++.++++...|.++|.+.|+.
T Consensus 98 av~Li~~s~~I~~EAi~R~~~P~~------i~~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~ 171 (296)
T COG1230 98 ALLLIVVSLLILWEAIQRLLAPPP------IHYSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVG 171 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC------CCccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 223678999999999999999988775 467999999999999999988
Q ss_pred HHHHHHHHhhhhh-ccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCC
Q 017713 231 GLVAVLLANYIDD-WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS 309 (367)
Q Consensus 231 ~i~~~~~~~~~~~-~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~ 309 (367)
+++++.+..+++| |+||+.+++++++++..+++++|++...|++..|+....+++++.+. ..|+|.++|++++|..++
T Consensus 172 vIia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~-~~~~v~~vhdlHvWsi~~ 250 (296)
T COG1230 172 VIIAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALL-RIPGVASVHDLHVWSITG 250 (296)
T ss_pred HHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHh-cCCCccceeecccCCCCC
Confidence 8888888888875 99999999999999999999999999999998887777888998886 589999999999999977
Q ss_pred e-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 310 H-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 310 ~-~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
+ ...++|+++++..+-+ ++.+++++++.+.+++++++||+|+..
T Consensus 251 ~~~~~t~Hv~v~~~~~~~---~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 251 GEHALTLHVVVDEVADAD---AALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred CceeEEEEEEecCccchH---HHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 6 8899999999443322 288899999987789999999999863
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=1e-43 Score=334.57 Aligned_cols=273 Identities=28% Similarity=0.475 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHHH
Q 017713 79 IRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMAT 158 (367)
Q Consensus 79 l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~~ 158 (367)
+++++++|+++++.|+++|+.+||.++++|++|++.|+++.++.+++.+.+.||++++||||++|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH----hc--ChhhhHhHHHhhhHHHHHHHHH
Q 017713 159 LGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FT--NEIVKAYAQDHFFDVITNIIGL 232 (367)
Q Consensus 159 ~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~--s~~l~a~~~~~~~D~~~~~~~i 232 (367)
++++++++++++++++.+. ....+++.+++++++++..++++.++ .+ ++.+++.+.++++|++.+..++
T Consensus 81 ~~~~~~~~si~~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~ 155 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEP-----SPPGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVL 155 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSS-----STTTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-
T ss_pred hHHHHHHHHhhcccccccc-----hhhhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHH
Confidence 9999999999999998552 22233455578888899998888876 45 8899999999999999984444
Q ss_pred HHHHHHhhhh--hccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCC-
Q 017713 233 VAVLLANYID--DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS- 309 (367)
Q Consensus 233 ~~~~~~~~~~--~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~- 309 (367)
++..+..... ||+||++++++++++++.+++.++++...|+|++|+++..+++++.+++ .|++.+++++|+|+.|+
T Consensus 156 i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~g~~ 234 (284)
T PF01545_consen 156 ISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIES-VPGVIEVHDLRVWQVGRN 234 (284)
T ss_dssp SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHH-TSS-SEEEEEEEEEETT-
T ss_pred HHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhcc-CCceEeccceEEEEecCC
Confidence 4444443332 3599999999999999999999999999999999999999999999965 89999999999999999
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEEEEeecccC
Q 017713 310 HYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYEYT 357 (367)
Q Consensus 310 ~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~-~~~~v~~v~Vhvd~~~~ 357 (367)
.+.+++++.+||+++++|+|++++++++.++ +.+++.+++||++|+..
T Consensus 235 ~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 235 KYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 7999999999999999999999999999997 57999999999999764
No 8
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.7e-29 Score=227.57 Aligned_cols=271 Identities=14% Similarity=0.189 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHH
Q 017713 75 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFAS 154 (367)
Q Consensus 75 ~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~ 154 (367)
++|-+...+++|+.++.++++.+..+||+++++|++|++.|+.+..+.+++..++++|++.+||||+.|+|.++++++++
T Consensus 33 ~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~v 112 (354)
T KOG1484|consen 33 DSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGV 112 (354)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH-----hc-------------------
Q 017713 155 VMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA-----FT------------------- 210 (367)
Q Consensus 155 ~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~-----~~------------------- 210 (367)
+..+.+++++.|+++|+++|++ +. ......+...+.++|.+-.+..+. .+
T Consensus 113 flvl~a~fi~~Es~eRl~~ppe---i~---t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~ 186 (354)
T KOG1484|consen 113 FLVLIAFFIFSESVERLFDPPE---IH---TNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLL 186 (354)
T ss_pred HHHHHHHHHhHHHHHHhcCchh---cC---CceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhccccccc
Confidence 9999999999999999999844 32 223344555566666654433321 01
Q ss_pred -----------------ChhhhHhHHHhhhHHHHHHHHHHHHHHHhhhhh-ccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017713 211 -----------------NEIVKAYAQDHFFDVITNIIGLVAVLLANYIDD-WMDPVGAIILALYTIRTWSMTVLENVNSL 272 (367)
Q Consensus 211 -----------------s~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~~~-~~D~i~aiii~~~i~~~~~~~~~~~~~~L 272 (367)
+..+.....|.+.|.+.+++.++...+..+++| +.||+++++|++.|+.+.++++|++...|
T Consensus 187 ~~~~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iL 266 (354)
T KOG1484|consen 187 GVWDLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKIL 266 (354)
T ss_pred cccccccccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112445678899999998777777777777776 99999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHh--cCCCCCCcceEEEEEeCCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEE
Q 017713 273 VGRSAAPEYLQKLTYLCWN--HHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAF 349 (367)
Q Consensus 273 lg~s~~~~~~~~I~~~~~~--~~~~v~~v~~v~~~~~G~~-~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~ 349 (367)
+.+. ||+..+.+.+.+.+ ..++|.++.+-|.|+.+++ +...+|+.+..+. |.+.+.+.+.++++.. +|.+.+
T Consensus 267 Lq~t-Pp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~da---de~~vl~~V~~~~~~~-gV~~lt 341 (354)
T KOG1484|consen 267 LQRT-PPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDA---DEQSVLAHVTRKLEDA-GVKDLT 341 (354)
T ss_pred HhcC-ChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCc---chhHHHHHHHHHHHhc-ceeEEE
Confidence 9975 56655555443321 2589999999999999999 8899999998764 4557888888888875 799999
Q ss_pred EEeeccc
Q 017713 350 VHLDYEY 356 (367)
Q Consensus 350 Vhvd~~~ 356 (367)
|++|.+.
T Consensus 342 vQv~~~~ 348 (354)
T KOG1484|consen 342 VQVEKEN 348 (354)
T ss_pred EEEeccc
Confidence 9988764
No 9
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.4e-29 Score=231.90 Aligned_cols=278 Identities=15% Similarity=0.205 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHH
Q 017713 73 RSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVF 152 (367)
Q Consensus 73 ~~~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~ 152 (367)
+..+|.++.+.++.+.+.+.|++.|+.+||+|+++|+.|.+.|+.+-.+.+++.+.+++|++++..|||.|.|.+++++.
T Consensus 69 ~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~S 148 (379)
T KOG1482|consen 69 RAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVS 148 (379)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHH
Confidence 33567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH------hc---------------C
Q 017713 153 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA------FT---------------N 211 (367)
Q Consensus 153 ~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~------~~---------------s 211 (367)
...++.....++++++.|+++++.+ + +...|++++..++++|.++...... .+ +
T Consensus 149 v~~IW~~tgvLV~~Ai~Rl~s~~~e--v---~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n 223 (379)
T KOG1482|consen 149 VLLIWVVTGVLVYEAIQRLLSGDYE--V---NGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELN 223 (379)
T ss_pred HHHHHHhhhhhHHHHHhhhhcCcee--e---cceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccc
Confidence 9999999999999999999999854 2 2245666677777777776655431 11 2
Q ss_pred hhhhHhHHHhhhHHHHHHHHHHHHHHHhhhhh---ccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 017713 212 EIVKAYAQDHFFDVITNIIGLVAVLLANYIDD---WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYL 288 (367)
Q Consensus 212 ~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~~~---~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~ 288 (367)
.+++|...|.+.|++.+ +|++.+....++.| ..||+.+++.+.+++.+-.+++|+.+..|++..|..-....+++.
T Consensus 224 ~nvraAyiHVlGDliQS-vGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~ 302 (379)
T KOG1482|consen 224 LNVRAAFVHVLGDLIQS-VGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKG 302 (379)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHH
Confidence 67899999999999997 67777766677753 899999999999999999999999999999987776678889999
Q ss_pred HHhcCCCCCCcceEEEEEeCCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecccCCCC
Q 017713 289 CWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 360 (367)
Q Consensus 289 ~~~~~~~v~~v~~v~~~~~G~~-~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~~~~~ 360 (367)
+.. .++|+.+|++++|..+-+ ....+|+.++|+ .+++.+.+++.+.|++..++.++++++||..+..+
T Consensus 303 l~~-iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~~ 371 (379)
T KOG1482|consen 303 LLS-IEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYGISHVTIQIEPYTEEMD 371 (379)
T ss_pred Hhh-hcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcceEEEEEEecCCccchh
Confidence 865 899999999999999877 779999999976 56778999999999988899999999999876543
No 10
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.4e-30 Score=238.40 Aligned_cols=269 Identities=16% Similarity=0.222 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHH
Q 017713 78 AIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMA 157 (367)
Q Consensus 78 ~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~ 157 (367)
-++.-+++.++++++|++.|+.++|++|+||++|++.|+++.++++++.+.+++.+..+|||||.|.|.++++++++++.
T Consensus 10 rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~ 89 (404)
T KOG1483|consen 10 RLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLT 89 (404)
T ss_pred ceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH------------------------------
Q 017713 158 TLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR------------------------------ 207 (367)
Q Consensus 158 ~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~------------------------------ 207 (367)
.+.+.++.|+++|++++..- ..+..++.+.+++++.|.+-+....
T Consensus 90 alc~~I~~EA~~R~I~p~~i-----~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~ 164 (404)
T KOG1483|consen 90 ALCVSILIEAIERIIEPHHI-----ENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLH 164 (404)
T ss_pred HHHHHHHHHHHHhhcCCccc-----cCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCc
Confidence 99999999999999998762 2223344555555555554221110
Q ss_pred ----------H-------------------h-----------------------------cChhhhHhHHHhhhHHHHHH
Q 017713 208 ----------A-------------------F-----------------------------TNEIVKAYAQDHFFDVITNI 229 (367)
Q Consensus 208 ----------~-------------------~-----------------------------~s~~l~a~~~~~~~D~~~~~ 229 (367)
+ . ++-+++..+.+.+.|++.++
T Consensus 165 ~~~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I 244 (404)
T KOG1483|consen 165 SHAIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSI 244 (404)
T ss_pred hhccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccce
Confidence 0 0 00122333455667888876
Q ss_pred HHHHHHHHHhhhh--h--ccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEE
Q 017713 230 IGLVAVLLANYID--D--WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAY 305 (367)
Q Consensus 230 ~~i~~~~~~~~~~--~--~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~ 305 (367)
+++.++++.+... | |+||+.+++++.+++.+++++.|++...|++..|..-..+++++.+.+ .|+|.+||++++|
T Consensus 245 ~Vi~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~-~~gv~~vh~lhvW 323 (404)
T KOG1483|consen 245 IVIVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLT-VPGVISVHDLHVW 323 (404)
T ss_pred EEEEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhc-Ccceeeeeeeeee
Confidence 6666655555443 3 999999999999999999999999999999988877779999999976 9999999999999
Q ss_pred Ee-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 306 TF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 306 ~~-G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
+. |..+...+||.++- .++.-++++.+++.+.+ .+|..+|++.|+..
T Consensus 324 qL~~~r~IAt~Hi~~~~---p~~~~~~a~~ir~~fh~-~GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 324 QLAGSRIIATIHIQIQN---PKEYMKIAEKIRSYFHD-QGIHSTTIQPEFAP 371 (404)
T ss_pred eeccceEEEEEEEEecC---cHHHHHHHHHHHHHHHh-cCCcceeeccchhh
Confidence 99 66699999999962 34555999999999988 49999999998876
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.3e-28 Score=214.41 Aligned_cols=275 Identities=17% Similarity=0.222 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhc-CCCCCCCCCccchhhhhHH
Q 017713 71 LARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ-TPNPYQYPIGKKRMQPLGI 149 (367)
Q Consensus 71 ~~~~~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~-~~~~~~~p~G~~r~E~l~~ 149 (367)
....+++.+.+|++..++++.+.+++|+.+||++++-|+++|+.|+..+.+.++..|... +|.+.|||||++-+||+..
T Consensus 14 ~~~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL 93 (314)
T COG3965 14 DSSNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVL 93 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHh
Confidence 345577899999999999999999999999999999999999999999999999998877 6667799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH----hcChhhhHhHHHhhhHH
Q 017713 150 LVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDV 225 (367)
Q Consensus 150 li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~ 225 (367)
.+++.+++.++++.++.++..+++++.+.+ +.++++..+.+..+++..+++.+| .+|+.+.++...|..|.
T Consensus 94 ~ing~ll~ll~lyAlinAl~~l~dGGR~v~-----~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst 168 (314)
T COG3965 94 AINGTLLALLCLYALINALGSLLDGGREVE-----PGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMST 168 (314)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcCCcccc-----ccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHH
Confidence 999999999999999999999999998643 367888888888888888888765 56788999999999999
Q ss_pred HHHHHHHHHHHHHhhh---------hhccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCC--
Q 017713 226 ITNIIGLVAVLLANYI---------DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHK-- 294 (367)
Q Consensus 226 ~~~~~~i~~~~~~~~~---------~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~-- 294 (367)
+.+ .++..+++..|. .+|+||+.-.+++++++..+.++++.+.++++..+|+ |+.++++....+-.+
T Consensus 169 ~lS-~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~ 246 (314)
T COG3965 169 CLS-AALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKY 246 (314)
T ss_pred HHH-HHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHh
Confidence 997 455555555443 2499999999999999999999999999999987655 887877766532111
Q ss_pred CCCCcceEEEEEeCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHHHHhcCCCccEEEEEee
Q 017713 295 SIRHIDTVRAYTFGSHYFVEVDIVLPASM---PLQEAHDIGESLQEKLELLPEIERAFVHLD 353 (367)
Q Consensus 295 ~v~~v~~v~~~~~G~~~~vev~I~~~~~~---~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd 353 (367)
+..+ +..++-+.|+..++|+|+.+|++. ++++.++|++++++.|.+.|.-...+|.+-
T Consensus 247 ~f~~-~~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT 307 (314)
T COG3965 247 GFPS-YHVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFT 307 (314)
T ss_pred cCch-HHHHHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEe
Confidence 1111 234467889999999999998875 478999999999999998887767766543
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=194.44 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=182.2
Q ss_pred hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhhhchHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017713 13 NFSIEWLVLQLLVLLGGPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTKEERENLARSETLAIRISNVANMVLFAA 92 (367)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~n~~l~i~ 92 (367)
++.+++|++++.+.+.| |++.+-|+......++.....+.. ..+..+...|++.+++++|.+-+.+
T Consensus 157 ~kal~v~gs~eaL~rer--rplve~yr~~l~~~~R~~~~~R~e------------~~n~~k~s~rvVatAi~iN~l~~~~ 222 (503)
T KOG2802|consen 157 AKALEVWGSPEALARER--RPLVEEYRERLFRNQRILREYRDE------------LGNTAKGSGRVVATAICINGLNCFF 222 (503)
T ss_pred hhhheeecCHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHH------------hcCcccCCCceehhHHHHHHHHHHH
Confidence 57899999999999888 444443443333333331111111 0112245667888999999999999
Q ss_pred HHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHHHh
Q 017713 93 KVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQI-ILESLRTL 171 (367)
Q Consensus 93 ~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~~~~~~i-~~esi~~l 171 (367)
|+.+++.|||.+++|+++||++|..+++++.++.+.+.+.||..|||||.++.++..+|.|+.++++|..+ +++++..|
T Consensus 223 Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~G~GlSiyhGv~gL 302 (503)
T KOG2802|consen 223 KFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCMGCGLSIYHGVMGL 302 (503)
T ss_pred HhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeeecccchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888888764 89999999
Q ss_pred hcCCcccccccchhhHHHHHHHHHHHHHHHHH-------------------HHHHHhcChhhhHhHHHhhhHHHHH-HHH
Q 017713 172 VSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLV-------------------VYCRAFTNEIVKAYAQDHFFDVITN-IIG 231 (367)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~-------------------~~~~~~~s~~l~a~~~~~~~D~~~~-~~~ 231 (367)
++|+|- ++..|+..+...+++....-. -|.++-++|...+.. ..|...- .++
T Consensus 303 lhpePi-----~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvVl---~EDtAAVtGv~ 374 (503)
T KOG2802|consen 303 LHPEPI-----ESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVVL---LEDTAAVTGVI 374 (503)
T ss_pred cCCCCC-----cchHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCcceEEE---ecchHHHHHHH
Confidence 999983 445777777766665444322 222333455444332 2233331 122
Q ss_pred HHHHHHH--hhh-hhccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeC
Q 017713 232 LVAVLLA--NYI-DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFG 308 (367)
Q Consensus 232 i~~~~~~--~~~-~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G 308 (367)
+.++..+ ..+ +|..|++|+++|+.++-.. +.+++|++....|
T Consensus 375 IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV-----------------------------------e~diyDvK~~diG 419 (503)
T KOG2802|consen 375 IAAACMGLSSITGNPIYDSLGSIVVGALLGMV-----------------------------------ENDIYDVKATDIG 419 (503)
T ss_pred HHHHHHHHHHhcCCCCccccchHHHHHHHHHH-----------------------------------HHhhhhccceeec
Confidence 2222222 223 3899999999998765332 1238889999999
Q ss_pred Ce-EEEEEEEEeCCCCC
Q 017713 309 SH-YFVEVDIVLPASMP 324 (367)
Q Consensus 309 ~~-~~vev~I~~~~~~~ 324 (367)
+. +....++.+|+.+-
T Consensus 420 ~g~vRfKAE~DFdGr~v 436 (503)
T KOG2802|consen 420 LGKVRFKAEVDFDGRVV 436 (503)
T ss_pred cceeEEEEEeccCchhh
Confidence 98 66888888888753
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.1e-06 Score=81.53 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHH
Q 017713 75 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFAS 154 (367)
Q Consensus 75 ~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~ 154 (367)
.-.+..+++++|..+...+.-.|..+||.+|.||+.|+.+|+++++..+++.-... +|+..++++++++.++
T Consensus 119 ~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I~~ 190 (304)
T COG0053 119 ALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLISL 190 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHH
Confidence 45567788999999999999999999999999999999999999999999976322 4899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccc
Q 017713 155 VMATLGLQIILESLRTLVSNEDQFN 179 (367)
Q Consensus 155 ~~~~~~~~i~~esi~~l~~~~~~~~ 179 (367)
+++..++.++++++..|++...+++
T Consensus 191 ~Il~~~~~~~~~s~~~L~d~~~~~~ 215 (304)
T COG0053 191 YILKTGFRLFKESVNELMDAALDPE 215 (304)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCHH
Confidence 9999999999999999999666443
No 14
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.24 E-value=1.3e-05 Score=76.20 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHH
Q 017713 77 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 156 (367)
Q Consensus 77 ~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~ 156 (367)
.+..+++++|.++...+...+..++|.++.||+.|+..|+++++.++.+...+. +|+..+|++++++.++++
T Consensus 119 ~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~i 190 (299)
T PRK09509 119 IVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYI 190 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHH
Confidence 345677888998888888889999999999999999999999998888876643 478889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcc
Q 017713 157 ATLGLQIILESLRTLVSNEDQ 177 (367)
Q Consensus 157 ~~~~~~i~~esi~~l~~~~~~ 177 (367)
+..++.++++++..|++..++
T Consensus 191 l~~~~~i~~~~~~~Ll~~~~~ 211 (299)
T PRK09509 191 LYSALRMGYEAVQSLLDRALP 211 (299)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999987653
No 15
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.22 E-value=1.1e-05 Score=75.27 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHH
Q 017713 77 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 156 (367)
Q Consensus 77 ~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~ 156 (367)
.+...++++|.+++..+...+...+|.++.||+.|++.|+++++..+++...+. ||+..+|++++++.++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 356678899999999999999999999999999999999999999999887664 467899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcc
Q 017713 157 ATLGLQIILESLRTLVSNEDQ 177 (367)
Q Consensus 157 ~~~~~~i~~esi~~l~~~~~~ 177 (367)
+..++.++++++..+++..++
T Consensus 170 ~~~~~~l~~~~~~~Ll~~~~~ 190 (268)
T TIGR01297 170 LYTAFRLLKESINVLLDAAPD 190 (268)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999988763
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.56 E-value=0.00074 Score=64.57 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHHHH
Q 017713 80 RISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 159 (367)
Q Consensus 80 ~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~~~ 159 (367)
..++++|.+.+.... -+...+|.++.||+.|...|+++++.++++...... .|+.-++|+++++.+++++..
T Consensus 129 ~~~~~~~~~~~~~~~-~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~ 200 (312)
T PRK03557 129 VAGLLANILSFWLLH-HGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRS 200 (312)
T ss_pred HHHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHH
Confidence 455666765544333 244568899999999999999999998887655431 255569999999999999999
Q ss_pred HHHHHHHHHHHhhcCCc
Q 017713 160 GLQIILESLRTLVSNED 176 (367)
Q Consensus 160 ~~~i~~esi~~l~~~~~ 176 (367)
++.++++++..|++..+
T Consensus 201 ~~~l~~~~~~~Lld~~p 217 (312)
T PRK03557 201 AWRLLKESVNELLEGAP 217 (312)
T ss_pred HHHHHHHHHHHHHccCC
Confidence 99999999999998766
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.001 Score=64.45 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHH
Q 017713 77 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 156 (367)
Q Consensus 77 ~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~ 156 (367)
+.+.+++....+.+.+-.+++..++|-.+.|-|.|-..|++++.+.|++...+.. ++.-++|+++++++..+
T Consensus 231 ~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~--------~~~~lDP~gailVS~~i 302 (412)
T KOG1485|consen 231 WLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYY--------YNYWLDPIGAILVSTYI 302 (412)
T ss_pred hhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------hhhcccchhhhhhheeh
Confidence 5566677888888888999999999999999999999999999999999988753 33569999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccc
Q 017713 157 ATLGLQIILESLRTLVSNEDQFN 179 (367)
Q Consensus 157 ~~~~~~i~~esi~~l~~~~~~~~ 179 (367)
+..+.....+++..|++...+|+
T Consensus 303 i~t~~~t~~~~i~~Lvg~~a~pe 325 (412)
T KOG1485|consen 303 IYTGGRTGLENIKELVGRSAPPE 325 (412)
T ss_pred hhhhhHHHHHHHHHHhCCCCCHH
Confidence 99999999999999998755444
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=95.64 E-value=0.014 Score=54.77 Aligned_cols=92 Identities=23% Similarity=0.231 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--hHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccch-hhhhHHHHHHHH
Q 017713 79 IRISNVANMVLFAAKVYASVKSG--SLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKR-MQPLGILVFASV 155 (367)
Q Consensus 79 l~~s~~~n~~l~i~~~~~~~~s~--S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r-~E~l~~li~~~~ 155 (367)
..+++++|.++.....-.+-..+ |..+.+++.|+..|.+.++..+++.....-. ++.. +|++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 56778888888888887777777 9999999999999999998888876654332 2333 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcc
Q 017713 156 MATLGLQIILESLRTLVSNEDQ 177 (367)
Q Consensus 156 ~~~~~~~i~~esi~~l~~~~~~ 177 (367)
++..++.++++++..|++..++
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~~~ 203 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDASPD 203 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-SHH
T ss_pred Hhhhhhhchhhhhccccccccc
Confidence 9999999999999999988753
No 19
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.5 Score=44.58 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHH
Q 017713 76 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 155 (367)
Q Consensus 76 ~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~ 155 (367)
-.+..+++++|++-+..-.-- -..+.-+-+--+|.+.|++.++....+.-.... +||...+|+.+++.+++
T Consensus 128 l~va~~GL~vN~~~a~ll~~~--~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~-------~~w~~~Dpi~si~i~~l 198 (296)
T COG1230 128 LVVAIIGLVVNLVSALLLHKG--HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRF-------TGWSWLDPILSIVIALL 198 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhCC--CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCccchHHHHHHHHH
Confidence 344455667776655443322 123688888899999999999998888655443 37777999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 017713 156 MATLGLQIILESLRTLVSNED 176 (367)
Q Consensus 156 ~~~~~~~i~~esi~~l~~~~~ 176 (367)
++..+..+++++.+-++++.|
T Consensus 199 il~~a~~l~k~s~~iLle~~P 219 (296)
T COG1230 199 ILSSAWPLLKESLNILLEGVP 219 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999998877
No 20
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=89.61 E-value=5.7 Score=30.13 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhccchH---HHHHHHHHHHHHHHHHH
Q 017713 219 QDHFFDVITNIIGLVAVLLANYIDDWMDPV---GAIILALYTIRTWSMTV 265 (367)
Q Consensus 219 ~~~~~D~~~~~~~i~~~~~~~~~~~~~D~i---~aiii~~~i~~~~~~~~ 265 (367)
.+-..|.+.++++++.+.+....+|.+||+ +-++.+...+.-++..+
T Consensus 32 v~Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 32 VSRDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999988888788999999 55555555555555544
No 21
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=88.35 E-value=6.9 Score=30.73 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=37.0
Q ss_pred eEEEEEe-CCeEEEEEEEEeCCCCCHH-HHHHHHHHHHHHHhcCC--CccEEEEEee
Q 017713 301 TVRAYTF-GSHYFVEVDIVLPASMPLQ-EAHDIGESLQEKLELLP--EIERAFVHLD 353 (367)
Q Consensus 301 ~v~~~~~-G~~~~vev~I~~~~~~~l~-~~~~i~~~l~~~l~~~~--~v~~v~Vhvd 353 (367)
.+++... +..+.+++++.+....++. -+.++.+++++.++++- .+.++.|+++
T Consensus 49 ~v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 49 GVKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CeEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 3566655 6779999999998777654 56667777777777643 4556666664
No 22
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=86.71 E-value=10 Score=34.70 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhHhHHHhhhHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHH
Q 017713 186 QWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTV 265 (367)
Q Consensus 186 ~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~ 265 (367)
..+......+.+....=-+..|+.+..+.-..-.|.+.|.++ +|+.=+.+.+.....-.+.+-++..++++..+.|+.
T Consensus 36 ~~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~Vs--FgVaPA~l~y~~~~~~~~~~~~~a~~~~~~~alRLA 113 (234)
T COG1183 36 EAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVS--FGVAPALLLYSSGLNTGPLGLLAALLYVLCGALRLA 113 (234)
T ss_pred HHHHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHH--hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 345556666777777778888888877776778899999987 677666666655434478888999999999999999
Q ss_pred HHHhhhhc
Q 017713 266 LENVNSLV 273 (367)
Q Consensus 266 ~~~~~~Ll 273 (367)
+-|+..--
T Consensus 114 rFN~~~~~ 121 (234)
T COG1183 114 RFNVKTND 121 (234)
T ss_pred HccCcccC
Confidence 98887543
No 23
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=85.54 E-value=7.9 Score=29.92 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEeecc
Q 017713 283 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP--LQEAHDIGESLQEKLELLPEIERAFVHLDYE 355 (367)
Q Consensus 283 ~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~--l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~ 355 (367)
.+|.+++.+ .|++..-..+.+.+.|..=.+.+.++..++.+ ..+..+++++++++|++.-++ ++.|++-+.
T Consensus 7 ~~Ie~vl~~-~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv-~~~V~lv~~ 79 (96)
T PF14535_consen 7 SQIEEVLRE-FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV-RPEVELVPP 79 (96)
T ss_dssp HHHHHHHCT-STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-T
T ss_pred HHHHHHHHh-CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc-eEEEEEECC
Confidence 467777754 79988777888888888778899999988764 468889999999999865566 456666554
No 24
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=84.73 E-value=8 Score=33.09 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEeeccc
Q 017713 281 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEY 356 (367)
Q Consensus 281 ~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~-~~~v~~v~Vhvd~~~ 356 (367)
.-++|.+.+ ..+.+|++..+.-.|...+|-+++ +.+..-....++.+++.+++++ .|.+.+|+|.-||..
T Consensus 55 ~A~~Ia~~v----~~v~~V~dA~vvVtg~~A~Vgv~~--~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd~ 125 (158)
T TIGR02898 55 VADEIASEA----AKVKGVKDATVVITGNYAYVGVDL--TNGLEGSVTDELKEKVAETVKSTDNRIANVYVSADPDT 125 (158)
T ss_pred HHHHHHHHH----hcCCCCceEEEEEECCEEEEEEEc--CCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHHH
Confidence 344444444 456678899999999988877654 4444456788999999999998 899999999988863
No 25
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=80.35 E-value=8.2 Score=33.35 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEeecc
Q 017713 280 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYE 355 (367)
Q Consensus 280 ~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~-~~~v~~v~Vhvd~~ 355 (367)
+.-++|.+.+. .+.+|.+..+.-.|...+|-+++.-+ -....++.+++++++++ .|.+.+|+|.-||.
T Consensus 75 ~~a~~i~~~v~----~~~~V~~A~vvv~~~~a~Vav~~~~~----~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 75 QLADRIANRVK----KVPGVEDATVVVTDDNAYVAVDLDFN----RFNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEECCEEEEEEEeccc----ccchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 44555666553 45678889999999999998888732 24567999999999986 79999999988875
No 26
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=73.38 E-value=64 Score=28.34 Aligned_cols=101 Identities=9% Similarity=0.148 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-ChhhhHhHHHhhhHHHHHHHHHHH
Q 017713 156 MATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFT-NEIVKAYAQDHFFDVITNIIGLVA 234 (367)
Q Consensus 156 ~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~-s~~l~a~~~~~~~D~~~~~~~i~~ 234 (367)
+++.|+..+..++..++.... +.. .....+..++++......++.|.+|.+ +.+-+........-...+.+.=++
T Consensus 102 Ll~lg~~aLlsgitaff~~nA-~~~---GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~ 177 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNA-QVY---GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIA 177 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-cch---hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHH
Confidence 345556666677778886654 211 112233444445555666666666543 223333222222211111111111
Q ss_pred -----HHHHhhhhhccchHHHHHHHHHHHHH
Q 017713 235 -----VLLANYIDDWMDPVGAIILALYTIRT 260 (367)
Q Consensus 235 -----~~~~~~~~~~~D~i~aiii~~~i~~~ 260 (367)
+++-..+++-+||+.-.+++..++..
T Consensus 178 v~i~t~~lPtslN~~L~pi~l~IiGav~lal 208 (226)
T COG4858 178 VMIATVFLPTSLNPQLPPIALTIIGAVILAL 208 (226)
T ss_pred HHHHHhhCCCcCCcCCchHHHHHHHHHHHHH
Confidence 11111225689999988888776544
No 27
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=73.33 E-value=42 Score=32.22 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHhHHHhhhHHHHHHHHHHHHHHHhhh-------h-hccchHHHHHHHHHHHH
Q 017713 188 VVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-------D-DWMDPVGAIILALYTIR 259 (367)
Q Consensus 188 ~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~-------~-~~~D~i~aiii~~~i~~ 259 (367)
.+...+......++...|+...+|-.+.+++.+...|......++.+..+..+- + ..+...+++.=+++.+.
T Consensus 37 if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl 116 (354)
T KOG1484|consen 37 IFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVL 116 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 455556666666777777778888899999999999998877777777666543 1 26677777888999999
Q ss_pred HHHHHHHHHhhhhcC
Q 017713 260 TWSMTVLENVNSLVG 274 (367)
Q Consensus 260 ~~~~~~~~~~~~Llg 274 (367)
.++.+.+|++..|++
T Consensus 117 ~a~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 117 IAFFIFSESVERLFD 131 (354)
T ss_pred HHHHHhHHHHHHhcC
Confidence 999999999999996
No 28
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=73.22 E-value=56 Score=27.65 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHhHHHhhhHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHH
Q 017713 187 WVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 266 (367)
Q Consensus 187 ~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~~ 266 (367)
++......+.+....--...|+.+..+-.....|...|.++ +|++-+.+..... ...+.+.++..++++..++|+.+
T Consensus 22 ~a~~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vs--fgvaPa~l~~~~~-~~~~~~~~~~~~~~l~~a~RLAr 98 (151)
T TIGR00473 22 RACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVS--FGVAPAALAYSIG-NFQTIGILVAALFFLCGILRLAR 98 (151)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHH--HHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777777777887766666777899999986 5666555554332 22344445556788999999999
Q ss_pred HHhhh
Q 017713 267 ENVNS 271 (367)
Q Consensus 267 ~~~~~ 271 (367)
-|...
T Consensus 99 FN~~~ 103 (151)
T TIGR00473 99 FNVLN 103 (151)
T ss_pred hcccc
Confidence 88763
No 29
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=71.25 E-value=19 Score=28.77 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=38.3
Q ss_pred hhhhcCCCCCH-----HHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEe
Q 017713 269 VNSLVGRSAAP-----EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVL 319 (367)
Q Consensus 269 ~~~Llg~s~~~-----~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~ 319 (367)
+..|+|+..|+ |....|+..++ .+|.|.+|+++.+.+.|+.+.+.+.|..
T Consensus 53 le~lig~~~~~~~~~sEi~r~I~EaL~-~d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 53 LEDLIGKNYPREYVESEIEREIEEALL-QDPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHh-cCCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 45577774443 34555777775 5899999999999999999999888865
No 30
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=65.80 E-value=13 Score=26.75 Aligned_cols=49 Identities=29% Similarity=0.454 Sum_probs=30.2
Q ss_pred cceEEEEEeCCeEEEEEEEEeC-CCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017713 299 IDTVRAYTFGSHYFVEVDIVLP-ASMPLQEAHDIGESLQEKLELLPEIERAFV 350 (367)
Q Consensus 299 v~~v~~~~~G~~~~vev~I~~~-~~~~l~~~~~i~~~l~~~l~~~~~v~~v~V 350 (367)
..-++--...+ -.|.+.+.++ +..+ ....+.++++++|+.+|++..|.|
T Consensus 23 ~g~V~~i~i~~-~~V~v~l~l~~~~~~--~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 23 LGMVRDISIEG-GKVSVSLELPTPACP--AAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp TTSEEEEEECT-CEEEEEE--SSTTHT--THHHHHHHHHHHHHTSTT-SEEEE
T ss_pred cCCeeEEEEEC-CEEEEEEEECCCCch--HHHHHHHHHHHHHHhCCCCceEeC
Confidence 34444444533 3344445554 3333 678899999999999999988765
No 31
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=62.05 E-value=70 Score=24.56 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=33.0
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecccCCCCc
Q 017713 309 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRPE 361 (367)
Q Consensus 309 ~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~~~~~e 361 (367)
+...+.+.+-.+. .+ ....+.+.+++.+..+++++.+.|.++....-.++
T Consensus 37 ~~v~i~l~l~~p~-~~--~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~~~~~ 86 (99)
T TIGR02945 37 GHVDIQMTLTAPN-CP--VAGSMPGEVENAVRAVPGVGSVTVELVWDPPWTPE 86 (99)
T ss_pred CeEEEEEEECCCC-CC--hHHHHHHHHHHHHHhCCCCceEEEEEEeeCCCChH
Confidence 3444444443332 23 45568899999999999999888888766544443
No 32
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=58.44 E-value=61 Score=24.74 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=40.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEE--EEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 273 VGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYF--VEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 273 lg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~--vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
+|. +.|++.+.+.+++.++.|+ .....+..+....+.+ |.+.|.. .+.++.+.+- +.|.+.+.|
T Consensus 21 mG~-a~~~l~~~vv~vvqr~ap~-~~~~~~~~k~SSkGnY~svsI~i~A---~~~EQ~e~ly----~eL~~~~~V 86 (90)
T COG2921 21 MGA-AGPELEDQVVEVVQRHAPG-DYTPRVSWKPSSKGNYLSVSITIRA---TNIEQVEALY----RELRKHEIV 86 (90)
T ss_pred hcc-cchhHHHHHHHHHHHHCCc-ccCceeeeccCCCCceEEEEEEEEE---CCHHHHHHHH----HHHhhCCce
Confidence 563 6889999999999998887 3455665566544444 5555544 2455554444 445555554
No 33
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.21 E-value=42 Score=24.28 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
.|...+++.+.+.++ + .++.+++....++.+...+.+.+|++.+.. ++.+.++...++
T Consensus 9 rpGiv~~vt~~la~~--~-~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~---~l~~~l~~l~~~ 66 (75)
T cd04870 9 RPGLTSALTEVLAAH--G-VRILDVGQAVIHGRLSLGILVQIPDSADSE---ALLKDLLFKAHE 66 (75)
T ss_pred CCCHHHHHHHHHHHC--C-CCEEecccEEEcCeeEEEEEEEcCCCCCHH---HHHHHHHHHHHH
Confidence 467889999999653 3 357777766777777788888888765543 555555555544
No 34
>COG1824 Permease, similar to cation transporters [Inorganic ion transport and metabolism]
Probab=54.20 E-value=1.6e+02 Score=26.23 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhH-------HHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccch---
Q 017713 74 SETLAIRISNVANMVLFAAKVYASVKSGSLAIIAST-------LDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKR--- 143 (367)
Q Consensus 74 ~~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~ada-------l~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r--- 143 (367)
..+++..-++.++..+.+.+.++|..-+|..=.-+. +=.+.|...+....++.|.+.+-.--.++. ..+
T Consensus 25 ~~~~i~re~lpil~al~v~~siaG~vL~s~~~~l~~~p~llvl~P~~l~~~Gn~gSi~gARlST~lHlG~i~~-~~~~~~ 103 (203)
T COG1824 25 SDLKILRETLPILLALAVVGSIAGIVLESMEAVLEAVPGLLVLYPALLGTRGNLGSILGARLSTALHLGIIED-IRNLPD 103 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHHHHhccchHHHHHHHHHHHHHhhccccc-ccCchH
Confidence 467778888899999999999999988887544333 334556666666777777665432211111 111
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhH-HHHHHHHHH---HHHHHHHHHHHHh--cChhhhH
Q 017713 144 -MQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQW-VVGIMLSVT---LVKLLLVVYCRAF--TNEIVKA 216 (367)
Q Consensus 144 -~E~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~-~~~i~~~~~---~v~~~l~~~~~~~--~s~~l~a 216 (367)
.+++..-.............+...+.....+.+.+++ ... .+.....+. .+.+.+.....|. +-.++..
T Consensus 104 ~~~~~~~s~v~~~~~~~~~~v~a~~vt~a~g~~~~~tl----vl~~~ia~~~~~~~v~~va~~la~~s~R~glDPDnvvi 179 (203)
T COG1824 104 LANNLVASLVLGPILLLVIGVIASLVTVALGGGGLATL----VLIALIAGLLLTVLVLLVAVLLAIASYRLGLDPDNVVI 179 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 2222222222222333344455556666655532211 111 111111111 1222222223343 3347777
Q ss_pred hHHHhhhHHHHHHHHH
Q 017713 217 YAQDHFFDVITNIIGL 232 (367)
Q Consensus 217 ~~~~~~~D~~~~~~~i 232 (367)
.-.-+..|++.+.+-+
T Consensus 180 PliTtl~D~vgv~~l~ 195 (203)
T COG1824 180 PLITTLGDLVGVVFLV 195 (203)
T ss_pred cchhhHHHHHHHHHHH
Confidence 7777889998864433
No 35
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=53.84 E-value=32 Score=38.50 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=38.8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeec
Q 017713 311 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 354 (367)
Q Consensus 311 ~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~ 354 (367)
-.+.+++.+|+++++++..++.+++++.+++.|+|++++..+-.
T Consensus 559 ~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v~s~vG~ 602 (1021)
T PF00873_consen 559 GEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSVSSRVGR 602 (1021)
T ss_dssp SEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEESE
T ss_pred CceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhccceEecc
Confidence 35788899999999999999999999999999999999887754
No 36
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.60 E-value=76 Score=26.99 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=40.9
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 346 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~ 346 (367)
.+-++.....|+...+.+.+.=++.++++++.++.+.+...|..-..+.
T Consensus 24 ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~edpi~ 72 (153)
T COG0779 24 ELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDVEDPIE 72 (153)
T ss_pred EEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCccc
Confidence 4668888888998999998888888999999999999999997433443
No 37
>PRK00907 hypothetical protein; Provisional
Probab=53.26 E-value=72 Score=24.63 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=41.6
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCe--EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 272 LVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH--YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 272 Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~--~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
.+|. ..+++.+.|..++.+|.|+.. -.++..+....+ .-+.+.|.+. +-++.+.|- +.|.+.|.|
T Consensus 22 VmG~-a~~~l~~~V~~vv~~h~p~~~-~~~i~~r~Ss~GkY~Svtv~i~at---s~eQld~iY----~~L~~~~~V 88 (92)
T PRK00907 22 AMGT-AERGLETELPRLLAATGVELL-QERISWKHSSSGKYVSVRIGFRAE---SREQYDAAH----QALRDHPEV 88 (92)
T ss_pred EEEc-CchhHHHHHHHHHHHhCCCCC-cCcEEeccCCCCEEEEEEEEEEEC---CHHHHHHHH----HHHhhCCCE
Confidence 3564 578999999999988888743 446666655433 4466666664 345555444 455555666
No 38
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=52.42 E-value=41 Score=32.69 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=60.1
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 017713 103 LAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 176 (367)
Q Consensus 103 ~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~~~~~~i~~esi~~l~~~~~ 176 (367)
..+-|--+|-+.|++=+...+++..+.+-.| +|.-.+++-.++++++.+...+.++++.+..|+++.|
T Consensus 224 ~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P------~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P 291 (379)
T KOG1482|consen 224 LNVRAAFVHVLGDLIQSVGVLIAALIIYFKP------EYKIADPICTFVFSIIVLGTTITILRDILGILMEGTP 291 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeEEecc------cceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 6788888999999999999999887766444 5566899999999999999999999999999999887
No 39
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.23 E-value=78 Score=22.68 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCC
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 322 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~ 322 (367)
.|....++..++.+ -+ .+|++.++...++++.+++-.+.+++
T Consensus 11 r~gLl~~i~~~l~~--~~-l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 11 RPGLFARIAGALDQ--LG-LNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CCCHHHHHHHHHHH--CC-CCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 35677888888864 33 47889999988877787777776665
No 40
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=51.28 E-value=84 Score=22.15 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE
Q 017713 279 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 348 (367)
Q Consensus 279 ~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v 348 (367)
|..+++|..+..+ .+ ..++++.+......-...+.++++++ ++..+.+.++|+++++|.+|
T Consensus 3 ~GvL~Ri~~vf~r--Rg-~nI~sl~v~~~~~~~~~riti~v~~~------~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 3 PGVLNRITGVFRR--RG-FNIESLSVGPTEDPGISRITIVVSGD------DREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp TTHHHHHHHHHHT--TT--EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCSTTEEEE
T ss_pred cHHHHHHHHHHhc--CC-eEEeeEEeeecCCCCEEEEEEEEeeC------chhHHHHHHHHhccCCeEeC
Confidence 4678888888853 55 46889999886555555555666542 12234688889998888553
No 41
>PRK14637 hypothetical protein; Provisional
Probab=50.57 E-value=66 Score=27.25 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEee
Q 017713 281 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 353 (367)
Q Consensus 281 ~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd 353 (367)
..+.+..++.+ -+ ..+.++.....|....+.+.|.-++..+++++.++.+.+...|....+...-+.++-
T Consensus 10 ~~~~v~p~~~~--~g-~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVS 79 (151)
T PRK14637 10 YFSECEPVVEG--LG-CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVS 79 (151)
T ss_pred HHHHHHHHHHh--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEe
Confidence 34556666643 33 347788888888888888888777779999999999999998865322333344443
No 42
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=50.30 E-value=85 Score=23.52 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 017713 275 RSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 351 (367)
Q Consensus 275 ~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vh 351 (367)
..+.|+.++++.+... +.|.. +-.+.....-+.-.+.+++.++++-++. -+...|+|+.++..+.+.
T Consensus 10 ar~~pe~leRVLrvtr--hRGF~-vcamnmt~~~da~~~nie~tV~s~R~~~-------lL~~QLeKl~Dv~~V~i~ 76 (86)
T COG3978 10 ARFNPETLERVLRVTR--HRGFR-VCAMNMTAAVDAGNANIELTVDSDRSVD-------LLTSQLEKLYDVAHVEIT 76 (86)
T ss_pred ccCChHHHHHHHHHhh--hcCeE-EEEeecccccccccceEEEEEcCCCChH-------HHHHHHHHHccceeEEEe
Confidence 3467899999999884 35432 3333333332223455666777777764 677888998898766553
No 43
>PLN02601 beta-carotene hydroxylase
Probab=49.17 E-value=2.3e+02 Score=26.51 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=9.6
Q ss_pred HhhhHHHHHHHHHHHH
Q 017713 220 DHFFDVITNIIGLVAV 235 (367)
Q Consensus 220 ~~~~D~~~~~~~i~~~ 235 (367)
.-+||++.-++++.+.
T Consensus 178 FE~NDlFaVifAvpAI 193 (303)
T PLN02601 178 FELNDVFAIVNAVPAI 193 (303)
T ss_pred cccccchhhhhHHHHH
Confidence 4578987654444433
No 44
>PRK14635 hypothetical protein; Provisional
Probab=48.94 E-value=1.3e+02 Score=25.83 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=35.6
Q ss_pred CcceEEEEEeCCeEEEEEEEEe----CCCCCHHHHHHHHHHHHHHHhc
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVL----PASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~----~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
.+.++.+...|+...+.+.|.- ++..+++++..+.+.+...|..
T Consensus 21 el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~ 68 (162)
T PRK14635 21 KLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELER 68 (162)
T ss_pred EEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCC
Confidence 4668888888888888888864 2458999999999999999964
No 45
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.88 E-value=28 Score=27.64 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCccEEEEEeecccCCCC
Q 017713 324 PLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 360 (367)
Q Consensus 324 ~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~~~~~ 360 (367)
+...+..+...|++.++-.|-|+++-|++|++..+.+
T Consensus 35 s~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~K~~ 71 (116)
T COG2098 35 SPGTAESLEKAIEESIKVQPFVEDAEVKIDRDKEKLD 71 (116)
T ss_pred CccchHHHHHHHHHHHhcCCceeeEEEEecccccccc
Confidence 4456777888888888888999999999999855433
No 46
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=47.67 E-value=91 Score=27.11 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=31.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 313 VEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 313 vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
|.+.+.++..- -.....+.+.++++++.+++++.+.|.+.++.
T Consensus 115 V~I~mtLt~p~-c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~dp 157 (174)
T TIGR03406 115 VDIEMTLTAPG-CGMGPVLVEDVEDKVLAVPNVDEVEVELVFDP 157 (174)
T ss_pred EEEEEEeCCCC-CcHHHHHHHHHHHHHHhCCCceeEEEEEEecC
Confidence 55555554221 13467888999999999999999998887765
No 47
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=46.16 E-value=1.5e+02 Score=26.04 Aligned_cols=75 Identities=8% Similarity=0.032 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcc--eEEEEEeCCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHh-cCCCccEEEEEe
Q 017713 278 APEYLQKLTYLCWNHHKSIRHID--TVRAYTFGSHYFVEVDIVLPAS--MPLQEAHDIGESLQEKLE-LLPEIERAFVHL 352 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~--~v~~~~~G~~~~vev~I~~~~~--~~l~~~~~i~~~l~~~l~-~~~~v~~v~Vhv 352 (367)
+++..++|+.++.+.......-| ++.+..+..+-. +.|.+.+. -.....-.+.+.+|+.|+ ..|++.+|.---
T Consensus 103 ~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~--v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~ 180 (190)
T TIGR03341 103 DAPLEERINYVLQSEINPQLASHGGKVTLVEITDDGV--AVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDAT 180 (190)
T ss_pred chHHHHHHHHHHHhccCHHHHhcCCceEEEEEcCCCE--EEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEec
Confidence 44578888888854343223333 666666532222 34444433 334556678889999997 489997665433
Q ss_pred ec
Q 017713 353 DY 354 (367)
Q Consensus 353 d~ 354 (367)
|.
T Consensus 181 ~~ 182 (190)
T TIGR03341 181 DH 182 (190)
T ss_pred Cc
Confidence 33
No 48
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=45.34 E-value=1.2e+02 Score=22.37 Aligned_cols=63 Identities=10% Similarity=0.194 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 350 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~V 350 (367)
.|..++++.....+ .| ..++++.+-...+.-...+.+++..+ +..+.+.+.|+++++|.++.+
T Consensus 13 ~pGVL~Ri~~lf~r--RG-fnI~sl~v~~t~~~~~sriti~v~~~-------~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 13 RPEVLERVLRVVRH--RG-FQVCSMNMTQNTDAQNINIELTVASE-------RPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CccHHHHHHHHHhc--CC-eeeeeEEeeecCCCCEEEEEEEECCC-------chHHHHHHHHhcCcCeEEEEE
Confidence 56888999998843 55 46888888776555455566666433 445688899999999976654
No 49
>PRK14634 hypothetical protein; Provisional
Probab=44.26 E-value=1.7e+02 Score=24.78 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=39.5
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCcc
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPAS--MPLQEAHDIGESLQEKLELLPEIE 346 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~--~~l~~~~~i~~~l~~~l~~~~~v~ 346 (367)
.+.++.....|....+.+.|.-+.. .+++++.++.+.+...|...+.+.
T Consensus 23 elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~ 73 (155)
T PRK14634 23 ELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLT 73 (155)
T ss_pred EEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCC
Confidence 4678888888888888888887666 999999999999999997543443
No 50
>PRK14647 hypothetical protein; Provisional
Probab=44.11 E-value=1.9e+02 Score=24.63 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=38.9
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
.+.++.....|+...+.+.|.-++..+++++..+.+.+...|.....+
T Consensus 24 ~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~d~i 71 (159)
T PRK14647 24 ELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFI 71 (159)
T ss_pred EEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcccccC
Confidence 466778777788888888887777899999999999999999753333
No 51
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=44.07 E-value=1.5e+02 Score=22.87 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCC
Q 017713 116 LLSGFILWFTAFSMQTPNPYQYPI 139 (367)
Q Consensus 116 ~~s~~i~l~~~~~~~~~~~~~~p~ 139 (367)
++..+...++...+.+..+.+||+
T Consensus 81 l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 81 LLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHCCCeeecCe
Confidence 444555566666677777788886
No 52
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=43.70 E-value=3.7e+02 Score=29.73 Aligned_cols=261 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhH-----HHHHhhHHHHHHHHHHHHHhcCCCCCCCCCcc---chhhhh
Q 017713 76 TLAIRISNVANMVLFAAKVYASVKSGSLAIIAST-----LDSLLDLLSGFILWFTAFSMQTPNPYQYPIGK---KRMQPL 147 (367)
Q Consensus 76 ~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~ada-----l~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~---~r~E~l 147 (367)
|.++.....+=+.+++.-+..-.+--|.-+++=+ +-++.|...-.+=-.--++.+...+..+++.- .--|..
T Consensus 359 RsAli~~~~lPLS~li~f~~M~~~gi~~NlMSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~ 438 (1027)
T COG3696 359 RSALIVIISLPLSLLIAFIVMNFFGISANLMSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVG 438 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcchhhcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHH-HhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcChhhhHhHHHhhhH
Q 017713 148 GILVFASVMATLGLQ--IILESLR-TLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFD 224 (367)
Q Consensus 148 ~~li~~~~~~~~~~~--i~~esi~-~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D 224 (367)
..+++|.+++.+.+. ...++++ ++++|-. + .....+++.++.++.+--.+..|.-|-+-+.-...-..+..-
T Consensus 439 ~~v~f~~lII~vvf~PIFtL~GvEGklF~Pma---~--t~~~al~~a~llsiT~iPal~~~~i~~~~~e~en~l~r~~~r 513 (1027)
T COG3696 439 RPVFFGLLIITVVFLPIFTLTGVEGKLFAPLA---F--TKTYALLAALLLSITFIPALMAYLIRGILPESENPLMRFLIR 513 (1027)
T ss_pred hhHhhhhhhheeehhhhheeccccccccchHH---H--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH--------------HHHHHHHHHHH
Q 017713 225 VITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAP--------------EYLQKLTYLCW 290 (367)
Q Consensus 225 ~~~~~~~i~~~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~--------------~~~~~I~~~~~ 290 (367)
.+.-.+-.....--..+ .++++.........-++-++-++.|=..+.-. +..+++++.++
T Consensus 514 ~Y~plL~~~l~~p~~vl------~~A~~~~~~s~~l~~~lG~eF~P~l~Eg~l~~~~~~~Pg~Sl~~~~~m~~~~e~~ik 587 (1027)
T COG3696 514 VYAPLLEFVLKLPKLVL------LGAVLSLVASLVLLPKLGREFLPELNEGDLVYMPLTIPGVSLDEALRMLQAIERAIK 587 (1027)
T ss_pred HHHHHHHHHHcCchHHH------HHHHHHHHHHHHHHHhcchhcCCCCCcCceeeeeccCCCCCHHHHHHHHHHHHHHHh
Q ss_pred hcCCCCCCcceEEEEEeCCeE---------EEEEEEEeCCCCCHHH---HHHHHHHHHHHHhcCCCccEEEEEe
Q 017713 291 NHHKSIRHIDTVRAYTFGSHY---------FVEVDIVLPASMPLQE---AHDIGESLQEKLELLPEIERAFVHL 352 (367)
Q Consensus 291 ~~~~~v~~v~~v~~~~~G~~~---------~vev~I~~~~~~~l~~---~~~i~~~l~~~l~~~~~v~~v~Vhv 352 (367)
+ +|+|+.+ .-+.|+.- ..|.+|.+.|+--.++ -+++.+++++.++++|++...+.+.
T Consensus 588 ~-~PeV~~V----~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW~~~~t~~~lie~l~~~~~~lpG~~~~~tqP 656 (1027)
T COG3696 588 K-FPEVERV----FGKTGRAETATDPAPLNMIETFIELKPQEEWKDKKTRDELIEELRKTLEQLPGLANSFTQP 656 (1027)
T ss_pred c-Ccchhee----eeccccCCCCCCCCCcccceeeEEecchhhCCCcccHHHHHHHHHHHHHhCCCcccccccc
No 53
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=42.58 E-value=1.3e+02 Score=21.97 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=22.3
Q ss_pred CCCCCCCCccchhhhhHHHHHHHHHHHHHHHHH
Q 017713 132 PNPYQYPIGKKRMQPLGILVFASVMATLGLQII 164 (367)
Q Consensus 132 ~~~~~~p~G~~r~E~l~~li~~~~~~~~~~~i~ 164 (367)
+...+++.+..++|.+-.++-.++++..++--+
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pSl 82 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFPSL 82 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence 444567778888999999999998888877543
No 54
>PRK14646 hypothetical protein; Provisional
Probab=41.16 E-value=1.4e+02 Score=25.34 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=37.9
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCC--CCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPA--SMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~--~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
.+.++.....|....+.+.|.-+. ..+++++..+.+.+...|...+.+
T Consensus 23 eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i 72 (155)
T PRK14646 23 KICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLL 72 (155)
T ss_pred EEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCC
Confidence 466888888888888888887653 499999999999999999643333
No 55
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=40.78 E-value=3.3e+02 Score=26.04 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=43.4
Q ss_pred HHhcChhhhHhHHHhhhHHHHHHHHHHHHHHHhhh---------hhccchHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 017713 207 RAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI---------DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGR 275 (367)
Q Consensus 207 ~~~~s~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~---------~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~ 275 (367)
++..+...+.. ..+++.+.+|++.+++...+ .+++-++.++++.+++.+.++.+.-..-.+++--
T Consensus 67 ~~le~~i~k~~----~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l 140 (356)
T COG4956 67 KRLEEQIRKLP----VTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRL 140 (356)
T ss_pred HHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHh
Confidence 34444444443 34555555555555444322 2688999999999999999999998888887754
No 56
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=39.11 E-value=54 Score=25.19 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=20.8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHH
Q 017713 311 YFVEVDIVLPASMPLQEAHDIGES 334 (367)
Q Consensus 311 ~~vev~I~~~~~~~l~~~~~i~~~ 334 (367)
+.|+++|.+|++|+.+++.++..+
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~ 25 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKAR 25 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHH
Confidence 568999999999999999988654
No 57
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=38.81 E-value=52 Score=25.61 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHHHH
Q 017713 122 LWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 159 (367)
Q Consensus 122 ~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~~~ 159 (367)
.+.+.-.-.|| ||+|.|...+++.+++..+.
T Consensus 67 ~li~~~~GmRP-------GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 67 FLIGFPLGMRP-------GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred HHHhhhccCCC-------CCCeehhhhhHHHHHHHHHH
Confidence 34444445555 99999999988888876543
No 58
>PRK14640 hypothetical protein; Provisional
Probab=38.01 E-value=2.5e+02 Score=23.74 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=38.6
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
.+.++.....|+...+.+.|.-+...+++++..+.+.+...|...+.+
T Consensus 22 el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i 69 (152)
T PRK14640 22 ELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPI 69 (152)
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccC
Confidence 466888888888888888887666799999999999999999754333
No 59
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=36.98 E-value=3.1e+02 Score=30.79 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHHhcCCC
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLPE 344 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~-~~~i~~~l~~~l~~~~~ 344 (367)
+++..+.+.+-+++...++.+++.+..........+.+....+- +.++ ..++.+++++.-.++|.
T Consensus 55 ae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~--d~d~A~~~V~~kv~~~~~~LP~ 120 (1009)
T COG0841 55 AETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGT--DPDTAAVQVQNKIQQAESRLPS 120 (1009)
T ss_pred HHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCC--ChHHHHHHHHHHHHHHHhcCCC
Confidence 34557778888888888899999998888765555544444433 3332 23555566555545554
No 60
>PRK14638 hypothetical protein; Provisional
Probab=36.94 E-value=2.6e+02 Score=23.60 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=36.7
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHhcC
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPAS-MPLQEAHDIGESLQEKLELL 342 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~-~~l~~~~~i~~~l~~~l~~~ 342 (367)
.+.++.....|+...+.+.|.-+.. .+++++..+.+.+...|...
T Consensus 24 elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~ 69 (150)
T PRK14638 24 EIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDRE 69 (150)
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccc
Confidence 4667777787888888888876644 99999999999999999743
No 61
>PRK14632 hypothetical protein; Provisional
Probab=35.94 E-value=2e+02 Score=24.83 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=36.1
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 346 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~ 346 (367)
.+.++.... |....+.+.|.=++..+++++..+.+.+...|.....+.
T Consensus 24 eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~d~i~ 71 (172)
T PRK14632 24 ELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVIS 71 (172)
T ss_pred EEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCC
Confidence 455777553 666778888877777999999999999999997533333
No 62
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=35.91 E-value=1.2e+02 Score=25.20 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHH
Q 017713 80 RISNVANMVLFAAKVYASVKSGSLA 104 (367)
Q Consensus 80 ~~s~~~n~~l~i~~~~~~~~s~S~a 104 (367)
-+++++|+++.++-..++.+..+..
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~ 102 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGY 102 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888887776665544443
No 63
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.89 E-value=1.1e+02 Score=21.63 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEe-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017713 279 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 350 (367)
Q Consensus 279 ~~~~~~I~~~~~~~~~~v~~v~~v~~~~~-G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~V 350 (367)
|....+|.+.+.++ + .++..+..... +....+.+.+.+. +..+-.+++-++|++.|+|.+|.+
T Consensus 11 ~g~l~~I~~~la~~--~-inI~~i~~~~~~~~~~~i~~~v~v~------~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 11 PGVLSKVLNTIAQV--R-GNVLTINQNIPIHGRANVTISIDTS------TMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred CchHHHHHHHHHHc--C-CCEEEEEeCCCCCCeEEEEEEEEcC------chHHHHHHHHHHHhcCCCeEEEEE
Confidence 56778888888653 2 23444443221 2224455555543 233345677888999999988754
No 64
>PRK14639 hypothetical protein; Provisional
Probab=35.28 E-value=1.9e+02 Score=24.10 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=37.8
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 342 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~ 342 (367)
.+.++.....|....+.+.|.-++..+++++.++.+.+...|...
T Consensus 13 eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 13 SFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVE 57 (140)
T ss_pred EEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 466778777788888888888777799999999999999999753
No 65
>PRK14641 hypothetical protein; Provisional
Probab=35.13 E-value=3e+02 Score=23.86 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=36.9
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
.+.++.+...|....+.+.|.-++..+++++..+.+.|...|..
T Consensus 25 eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 25 YLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEE 68 (173)
T ss_pred EEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCc
Confidence 36678888888888888888777779999999999999999963
No 66
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=32.65 E-value=3e+02 Score=23.13 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017713 281 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 342 (367)
Q Consensus 281 ~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~ 342 (367)
+.+.+..++.. -+ ..+.++.....|++..+.+.|.-++..+++++.++.+.+...|...
T Consensus 9 i~~~~~~~~~~--~g-~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 9 LTELIEPVVEA--LG-YELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHHHH--CC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 34444555532 23 2477888888888888888887777799999999999999999743
No 67
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=32.19 E-value=41 Score=22.49 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=16.5
Q ss_pred hhccchHHHHHHHHHHHHHHHH
Q 017713 242 DDWMDPVGAIILALYTIRTWSM 263 (367)
Q Consensus 242 ~~~~D~i~aiii~~~i~~~~~~ 263 (367)
+.++||+.|+++++.-.+.-.+
T Consensus 4 sr~lDP~~av~iG~~ayyl~e~ 25 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYYLYEN 25 (47)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 4689999999998876554443
No 68
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.77 E-value=2e+02 Score=20.78 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL 339 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l 339 (367)
.|.+..++...+.. .+ .+|.+-+++...+++.++.-.+.+++ -++..++.+.+|++|
T Consensus 11 r~gLFa~iag~L~~--~~-LnI~~A~i~tt~dG~~LDtF~V~d~~--~~~~~~~~~~~~~~~ 67 (68)
T cd04928 11 KPKLLSQLSSLLGD--LG-LNIAEAHAFSTDDGLALDIFVVTGWK--RGETAALGHALQKEI 67 (68)
T ss_pred CcchHHHHHHHHHH--CC-CceEEEEEEEcCCCeEEEEEEEecCC--ccchHHHHHHHHHhh
Confidence 35667778887754 33 47889999999888999999988864 467778888888765
No 69
>PRK14633 hypothetical protein; Provisional
Probab=31.30 E-value=3.2e+02 Score=23.00 Aligned_cols=61 Identities=3% Similarity=0.068 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 281 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 281 ~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
+.+.+..++.. -+. .+.++.....|. ..+.+.|.-++..+++++..+.+.+...|...+.+
T Consensus 6 i~~lv~p~~~~--~G~-eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~d~i 66 (150)
T PRK14633 6 LYEIVEPITAD--LGY-ILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVEDPV 66 (150)
T ss_pred HHHHHHHHHHH--CCC-EEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccCcCC
Confidence 34445555532 342 355777666555 47777777677799999999999999999753333
No 70
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=31.02 E-value=2.8e+02 Score=22.21 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 327 EAHDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 327 ~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
-+..+.+++++++++.++++.+.|.+..+.
T Consensus 64 ~~~~i~~~v~~al~~~~~v~~v~V~l~~~p 93 (111)
T COG2151 64 LAEVIADQVEAALEEIPGVEDVEVELTLSP 93 (111)
T ss_pred ccHHHHHHHHHHHHhcCCcceEEEEEEEcC
Confidence 367899999999999999999999888764
No 71
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.92 E-value=3.1e+02 Score=22.69 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEe-CCeEEEEEEEEeCCCCC-HHHHHHHHHHHHHHH
Q 017713 262 SMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMP-LQEAHDIGESLQEKL 339 (367)
Q Consensus 262 ~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~-G~~~~vev~I~~~~~~~-l~~~~~i~~~l~~~l 339 (367)
..+..+.+..+.|... .+.+.+.+.+ + .++. -..+++... +....+++++.+.=..+ .+-++.|.+.++..+
T Consensus 23 ag~a~~ev~Gv~~m~~--~~~~~~~e~l-~-~~n~--~kGV~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~v 96 (131)
T COG1302 23 AGIAAEEVEGVVGMAG--GFKDGLTEKL-G-KENV--TKGVKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEEV 96 (131)
T ss_pred HHHHHHHcCCeeeccc--hhhhhHHHHh-C-cccc--CCCeEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHHH
Confidence 3445566666666422 2556666655 3 1222 235667764 44499999999975544 356788888888888
Q ss_pred hcCCC--ccEEEEEeec
Q 017713 340 ELLPE--IERAFVHLDY 354 (367)
Q Consensus 340 ~~~~~--v~~v~Vhvd~ 354 (367)
+.+-+ +..+.||+.-
T Consensus 97 ~~mtgl~v~~VNV~V~g 113 (131)
T COG1302 97 ENMTGLKVVEVNVHVVG 113 (131)
T ss_pred HHhhCCceEEEEEEEEE
Confidence 76544 5577777754
No 72
>COG4035 Predicted membrane protein [Function unknown]
Probab=30.61 E-value=70 Score=24.58 Aligned_cols=42 Identities=14% Similarity=-0.009 Sum_probs=25.1
Q ss_pred HHHhhHHHHH-HHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHHHHHH
Q 017713 111 DSLLDLLSGF-ILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 159 (367)
Q Consensus 111 ~s~~D~~s~~-i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~~~~~ 159 (367)
.++-|.+=.. ..+++.-.-.|| ||+|.|++.+-+.+++++.-
T Consensus 62 ~~v~~~~~~ag~flig~v~gMRP-------GYGR~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 62 RSVPVPLYMAGCFLIGFVLGMRP-------GYGRVETVVGTFLAVLLWLY 104 (108)
T ss_pred cCCchHHHHHHHHHHHHhhccCC-------CCceeehhHHHHHHHHHHHh
Confidence 3444443333 334455555555 99999999886666655543
No 73
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=30.39 E-value=5.8e+02 Score=25.69 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcChhhhHhHHHhhhHH
Q 017713 146 PLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDV 225 (367)
Q Consensus 146 ~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~~~s~~l~a~~~~~~~D~ 225 (367)
++--.++-.+|.+.-+.+..|-=+.++.++-. +. ......+..++.+.++...+|..... +++..+..++-.-+|+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs-~~--rka~lPi~AAlGGmivPAlIY~~~n~-~~~~~~GWgIPmATDI 142 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELS-SF--KKASFPVIAALGGMIAPGLIYFFLNA-DTPSQHGFGIPMATDI 142 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-Ch--HHHHHHHHHHHhccHHHHHHHhheec-CCCccCccccccHHHH
Confidence 45555677777776666667777777776542 11 23344455566666777777766543 3445666677777888
Q ss_pred HHHHHHHHHHHHHh
Q 017713 226 ITNIIGLVAVLLAN 239 (367)
Q Consensus 226 ~~~~~~i~~~~~~~ 239 (367)
... +|++ +++|.
T Consensus 143 AFA-lgvL-allG~ 154 (438)
T PRK14856 143 AFA-LGVI-MLLGK 154 (438)
T ss_pred HHH-HHHH-HHhcC
Confidence 774 4554 44444
No 74
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=30.15 E-value=2.1e+02 Score=20.59 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEe--CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE
Q 017713 279 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 348 (367)
Q Consensus 279 ~~~~~~I~~~~~~~~~~v~~v~~v~~~~~--G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v 348 (367)
+..+..|...+.+ .+ ..+.++.+... +....+.+.+.++ +.++. +++-++|++.|+|.+|
T Consensus 17 ~GlL~dI~~~i~~--~~-~nI~~i~~~~~~~~~~~~~~l~v~V~---d~~~L----~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 17 PGLLADITSVISE--NG-VNIRSINARTNKDDGTARITLTVEVK---DLEHL----NQIIRKLRQIPGVISV 78 (80)
T ss_dssp TTHHHHHHHHHHC--SS-SEEEEEEEEE--ETTEEEEEEEEEES---SHHHH----HHHHHHHCTSTTEEEE
T ss_pred CCHHHHHHHHHHH--CC-CCeEEEEeEEeccCCEEEEEEEEEEC---CHHHH----HHHHHHHHCCCCeeEE
Confidence 4678888888854 23 36778888875 4557889999886 33433 3555677888998765
No 75
>PRK00106 hypothetical protein; Provisional
Probab=30.08 E-value=94 Score=32.08 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHh---cCCCccEEEEE
Q 017713 282 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS-MPLQEAHDIGESLQEKLE---LLPEIERAFVH 351 (367)
Q Consensus 282 ~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~-~~l~~~~~i~~~l~~~l~---~~~~v~~v~Vh 351 (367)
++++++++.+ +||| ....+.+.|+.+.| .++|+ .+-.++..++.+|.++|+ .+||--.|+|-
T Consensus 460 l~~lE~ia~~-~~gV---~~~yaiqaGREiRv----iV~p~~v~D~~~~~la~~ia~~Ie~~~~yPG~ikvtvi 525 (535)
T PRK00106 460 LRDLEEIANS-FDGV---QNSFALQAGREIRI----MVQPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVI 525 (535)
T ss_pred HHHHHHHHhc-CCcH---HHHHHHhcCCeEEE----EecCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 5667788854 6765 55667788986554 44554 778899999999999996 37886666553
No 76
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=29.01 E-value=1.1e+02 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.496 Sum_probs=22.7
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 017713 311 YFVEVDIVLPASMPLQEAHDIGESLQEK 338 (367)
Q Consensus 311 ~~vev~I~~~~~~~l~~~~~i~~~l~~~ 338 (367)
+.|++++.+|++++.++..++..+=++.
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a~E~~~ 30 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKAREKAR 30 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 6799999999999999988887654443
No 77
>PRK00341 hypothetical protein; Provisional
Probab=28.65 E-value=2.7e+02 Score=21.35 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=38.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCe--EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 273 VGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH--YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 273 lg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~--~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
+|. +.+++.+.|..++.+|. .. ....+..+....+ .-+.+.+.+. +-++.+ .+-+.|.+.|.|
T Consensus 23 iG~-~~~~~~~~V~~iv~~~~-~~-~~~~~~~k~Ss~GkY~S~tv~i~~~---s~~q~~----~iy~~L~~~~~V 87 (91)
T PRK00341 23 IGD-TGVGFKDLVIEILQKHA-DV-DLSTLAERQSSNGKYTTVQLHIVAT---DEDQLQ----DINSALRATGRV 87 (91)
T ss_pred EEc-CchhHHHHHHHHHHHhC-CC-cccceeeccCCCCEEEEEEEEEEEC---CHHHHH----HHHHHHhhCCCE
Confidence 553 57888999999997765 32 3556666666444 4466666664 334444 444556666666
No 78
>PRK09577 multidrug efflux protein; Reviewed
Probab=28.41 E-value=1.3e+02 Score=33.89 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 017713 312 FVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 351 (367)
Q Consensus 312 ~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vh 351 (367)
.+.+++.+|+++++++.+++.+++++.+++.|++++++..
T Consensus 568 ~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~~v~~~~~~ 607 (1032)
T PRK09577 568 NFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFAL 607 (1032)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 4478889999999999999999999999888888877643
No 79
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=28.12 E-value=1.3e+02 Score=22.49 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.6
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEE------eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 272 LVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYT------FGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 272 Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~------~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
++|+....+.+.++...+.++--+|.++..+.-+. ..+.+.+++++..++ . +..++++++.+.-++
T Consensus 4 vlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~-~---~~~~lr~~L~~la~e 75 (84)
T cd04871 4 LLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP-A---DLEALRAALLELASE 75 (84)
T ss_pred EEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC-C---CHHHHHHHHHHHhcc
Confidence 57877788999999999988766666666653331 124578888888654 3 445666666543344
No 80
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.98 E-value=1.7e+02 Score=30.16 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh---cCCCccEEEEE
Q 017713 282 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE---LLPEIERAFVH 351 (367)
Q Consensus 282 ~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~---~~~~v~~v~Vh 351 (367)
++.+..++.. +++ +....+.+.|+.+-|-|. |...+-.++..++.+|.++|+ .|||--.|+|-
T Consensus 439 l~~le~i~~~-~~g---v~~~~aiqaGreirv~v~---~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 504 (514)
T TIGR03319 439 LEKLEEIANS-FEG---VEKSYAIQAGREIRVMVK---PEKISDDQAVVLARDIAKKIEEELEYPGQIKVTVI 504 (514)
T ss_pred HHHHHHHHHh-CCC---chhhhhhhcCcEEEEEec---CCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 4457777754 555 456667788986554332 444788899999999999996 37887666653
No 81
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=27.60 E-value=1.4e+02 Score=33.70 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=36.9
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEee
Q 017713 311 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 353 (367)
Q Consensus 311 ~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd 353 (367)
-.+.+++.++++.++++++++.+++++.+++.|+|+.++..+-
T Consensus 568 ~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~~~~G 610 (1040)
T PRK10503 568 GIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG 610 (1040)
T ss_pred cEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEEEec
Confidence 3457788999999999999999999999988888988776554
No 82
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=27.50 E-value=5.2e+02 Score=24.24 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=37.6
Q ss_pred CHHH-HHHHHHHHHhcCCCCCCc--ceEEEEEeCCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 278 APEY-LQKLTYLCWNHHKSIRHI--DTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 278 ~~~~-~~~I~~~~~~~~~~v~~v--~~v~~~~~G~~-~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
|.+. .+.+++.+ +.+|++..= ..+.+...|+. ...++..-+++.--.+...++.+++++++++
T Consensus 197 d~~~~~~il~~~~-~~~~~vl~~p~p~v~~~~~~dssi~~~v~~wv~~~~~~~~~~~~~~~I~~~f~~ 263 (286)
T PRK10334 197 DIDQVKQILTNII-QSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDA 263 (286)
T ss_pred CHHHHHHHHHHHH-HhCCceecCCCCEEEEEeeeCceEEEEEEEEEecchhHHHHHHHHHHHHHHHHH
Confidence 4444 44455555 457887642 35777787777 5566666665432223345677778787764
No 83
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=27.31 E-value=5.4e+02 Score=28.98 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHHhcCC
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 343 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~-~~~i~~~l~~~l~~~~ 343 (367)
+++..+.+.+-+++...++.++++++.........+.+.... +.+..+ ..++.+++.+.-.++|
T Consensus 56 ~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~--~~d~~~a~~~v~~~v~~~~~~LP 120 (1025)
T PRK10614 56 PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDF--DRDINGAARDVQAAINAAQSLLP 120 (1025)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEEC--CCChHHHHHHHHHHHHHHHhhCC
Confidence 455566777777777778888888887666444545544443 344332 3555555554434566
No 84
>PRK02047 hypothetical protein; Provisional
Probab=27.11 E-value=2.9e+02 Score=21.12 Aligned_cols=61 Identities=10% Similarity=0.173 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCe--EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 277 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH--YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 277 ~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~--~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
..+++.+.|..++..+.|+.. -.++..+....+ .-+.+.+.+. +-++.+. +-++|.+.|.|
T Consensus 25 ~~~~~~~~v~~iv~~~~~~~~-~~~i~~k~Ss~GkY~Svtv~v~v~---s~eq~~~----iY~~L~~~~~V 87 (91)
T PRK02047 25 AHPEFADTIFKVVSVHDPEFD-LEKIEERPSSGGNYTGLTITVRAT---SREQLDN----IYRALTGHPMV 87 (91)
T ss_pred CcHhHHHHHHHHHHHhCCCCc-cCceEEccCCCCeEEEEEEEEEEC---CHHHHHH----HHHHHhhCCCE
Confidence 467888999999987767643 355666666444 4466666664 3444444 44555555666
No 85
>PRK11023 outer membrane lipoprotein; Provisional
Probab=27.09 E-value=1.2e+02 Score=26.59 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=44.6
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCCCCCcc-eEEEEEeCCeEEEEEEEEeCCCCCHHHHHH--HHHHHHHHHhcCCCccE
Q 017713 271 SLVGRSAAPEYLQKLTYLCWNHHKSIRHID-TVRAYTFGSHYFVEVDIVLPASMPLQEAHD--IGESLQEKLELLPEIER 347 (367)
Q Consensus 271 ~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~-~v~~~~~G~~~~vev~I~~~~~~~l~~~~~--i~~~l~~~l~~~~~v~~ 347 (367)
.|.|..++++..++..+++. ..++|++++ ++++ .-+.+ .....+| |..+++.+|...+.+..
T Consensus 80 ~L~G~V~~~~~k~~A~~ia~-~v~GV~~V~N~l~V-------------~~~~~-~~~~~~D~~It~kik~~L~~~~~v~~ 144 (191)
T PRK11023 80 LLTGQSPNAELSERAKQIAM-GVEGVNEVYNEIRQ-------------GQPIG-LGTASKDTWITTKVRSQLLTSDSVKS 144 (191)
T ss_pred EEEEEeCCHHHHHHHHHHHh-cCCCceeecceeee-------------ccccc-cccccCcHHHHHHHHHHHhcCCCCCc
Confidence 46788888888888999885 589988876 2222 11111 1122333 88899999976566665
Q ss_pred EEEEeecc
Q 017713 348 AFVHLDYE 355 (367)
Q Consensus 348 v~Vhvd~~ 355 (367)
..|+++-+
T Consensus 145 ~~I~V~t~ 152 (191)
T PRK11023 145 SNVKVTTE 152 (191)
T ss_pred ceEEEEEE
Confidence 55555543
No 86
>PF05105 Phage_holin_4: Holin family ; InterPro: IPR006480 This group of sequences describe one of the many mutually dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species []. This entry is represented by the Bacteriophage phi-29, Gp14 (holin). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.81 E-value=3.3e+02 Score=21.66 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 017713 246 DPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLT 286 (367)
Q Consensus 246 D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~ 286 (367)
.|+...++..++.....+++ ||...+ |...|+...+.++
T Consensus 74 ~~~~~~~~~~~i~~E~~SI~-EN~~~~-G~~iP~~l~~~l~ 112 (118)
T PF05105_consen 74 LPFRTLVIIFYILNELISIL-ENLAEM-GVPIPKWLKKFLK 112 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHh-CCCchHHHHHHHH
Confidence 46777788888888887777 888775 7544444444444
No 87
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=26.23 E-value=3.1e+02 Score=21.24 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHhhhh
Q 017713 18 WLVLQLLVLLGGPEDNVAEYYQQQVQMLEGFNE 50 (367)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~y~~q~~~i~~~~~ 50 (367)
+|...+... +.+.+....-+.++|...+.+..
T Consensus 22 ~i~~~L~~I-k~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 22 TIFNKLDEI-KDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred HHHHHHHHH-HHhHhhHHHHHHHHHhhHHHHHH
Confidence 444444333 34455666778888888888744
No 88
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=25.58 E-value=7.5e+02 Score=27.90 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHHhcCCC
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLPE 344 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~-~~~i~~~l~~~l~~~~~ 344 (367)
+.+..+.+.+-+++...++.++++++.+...++ ...+.+.++++.+..+ ..++.+++.....++|+
T Consensus 54 ~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g-~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP~ 120 (1044)
T TIGR00915 54 AQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDG-SMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQ 120 (1044)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCC-eEEEEEEEECCCChHHHHHHHHHHHHHHHhhCCC
Confidence 345566677777666777888888887764233 2345555555555544 35566666655556773
No 89
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=25.57 E-value=3.2e+02 Score=30.79 Aligned_cols=65 Identities=9% Similarity=0.189 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCC
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLP 343 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~ 343 (367)
+++..+.|.+-+++...++.++++++.+.....-.+.++...+.+++. ...++.+++.+.-.++|
T Consensus 65 ~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~d~~~-a~~ev~~~i~~~~~~LP 129 (1040)
T PRK10503 65 PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDV-AEQEVQAAINAATNLLP 129 (1040)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCCChHH-HHHHHHHHHHHHHHhCC
Confidence 345566688888777888899999998877655555555554433222 23455555554434566
No 90
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=25.55 E-value=6.9e+02 Score=25.00 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchH-----HHHHhHHHHHhhHHHHHHHHHH
Q 017713 75 ETLAIRISNVANMVLFAAKVYASVKSGSL-----AIIASTLDSLLDLLSGFILWFT 125 (367)
Q Consensus 75 ~~~~l~~s~~~n~~l~i~~~~~~~~s~S~-----aL~adal~s~~D~~s~~i~l~~ 125 (367)
+..-.+..++.|++.+++-....+..... +-+-+.++++.|..=.+++++.
T Consensus 295 ~si~~i~nl~tDli~~~~f~~l~i~~k~~l~IL~s~~~E~~Y~LSDt~KAF~IIL~ 350 (422)
T PRK02507 295 ESLNAIKNVFADLFSLIAFAVVLIFSREEIEVLKSFLDEIVYGLSDSAKAFIIILF 350 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44455667777777777766666655543 4566788999998877666554
No 91
>PRK04998 hypothetical protein; Provisional
Probab=25.27 E-value=3e+02 Score=20.76 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=38.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEe--CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 017713 273 VGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 345 (367)
Q Consensus 273 lg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~--G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v 345 (367)
+|. ..+++.+.|..++.++.|+.. .++.+.. |...-+.+.+.+. +-++. +.+-++|.+.|+|
T Consensus 21 ig~-~~~~~~~~v~~v~~~~~~~~~---~~~~r~S~~GkY~Svtv~v~v~---s~eq~----~~iY~~L~~~~~V 84 (88)
T PRK04998 21 MGL-ARPELVDQVVEVVQRHAPGDY---TPTVKPSSKGNYHSVSITITAT---SIEQV----ETLYEELAKIEGV 84 (88)
T ss_pred EEe-CcHhHHHHHHHHHHHhCCCCC---CceEccCCCCEEEEEEEEEEEC---CHHHH----HHHHHHHhcCCCE
Confidence 443 467899999999988766532 3445555 4444566666665 33444 4455566666776
No 92
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=25.27 E-value=1.4e+02 Score=20.87 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=9.9
Q ss_pred cCCCCCCCCCccc
Q 017713 130 QTPNPYQYPIGKK 142 (367)
Q Consensus 130 ~~~~~~~~p~G~~ 142 (367)
.+++..+||.|-+
T Consensus 28 ~~~~e~kypvgPw 40 (65)
T KOG3491|consen 28 TTKKEKKYPVGPW 40 (65)
T ss_pred ccCccccCCcchH
Confidence 3566789999987
No 93
>COG1279 Lysine efflux permease [General function prediction only]
Probab=24.46 E-value=3.3e+02 Score=24.30 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=45.5
Q ss_pred ChhhhHhHHHhhhHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017713 211 NEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVLENVNS 271 (367)
Q Consensus 211 s~~l~a~~~~~~~D~~~~~~~i~~~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~ 271 (367)
+..+.+.......|.+.-+.|+.+......-.+|+.++.-..=+.++++.++..++...+.
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4455666677788887655555544444444689999999999999999999999999884
No 94
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=24.43 E-value=2.4e+02 Score=21.50 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCcceEEEEEeCCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 297 RHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 297 ~~v~~v~~~~~G~~-~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
..+..++++...++ +.+++.+.++++ +......+.+.++..+.+
T Consensus 51 ~~~~~~~I~~f~~gsViv~~~~~f~~~-~~~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 51 PGFVGVTITSFRPGSVIVDFDVIFDPP-SSAPPADIEEALQNALQQ 95 (107)
T ss_dssp TTEEEEEEEEEEETEEEEEEEEEEETT-T-S-HHHHHHHHHHHHCC
T ss_pred CCcceEEEEEEECCCEEEEEEEEEeCC-CCCCHHHHHHHHHHHHHh
Confidence 56778888877655 889999998554 334456677777777755
No 95
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=24.28 E-value=3e+02 Score=20.55 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=30.5
Q ss_pred CCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEe
Q 017713 297 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 352 (367)
Q Consensus 297 ~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhv 352 (367)
.++.++.+.+.++...+.+|..-|+-. ......-.+++++.|++..+...+.+.+
T Consensus 26 agIs~IeI~r~~~~i~V~I~t~~pg~i-IGk~G~~I~~l~~~l~k~~~~~~v~I~v 80 (85)
T cd02411 26 AGYGGMEILRTPLGTQITIYAERPGMV-IGRGGKNIRELTEILETKFGLENPQIDV 80 (85)
T ss_pred CcccEEEEEEcCCcEEEEEEECCCCce-ECCCchhHHHHHHHHHHHhCCCCceEEE
Confidence 367788888877778888888544432 2221122245555555433443444554
No 96
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=24.21 E-value=3.6e+02 Score=21.22 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=37.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCC
Q 017713 273 VGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPE 344 (367)
Q Consensus 273 lg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~ 344 (367)
.|.....+.++++.+.+.+..++ +-.+++.+.+-++ +.++.. +.+++.++.+++.+.+++...
T Consensus 52 ~g~~~~~~~l~~i~~~l~~~~~~-----~~~~~r~~~~~f~---ii~~~~-~~~~~~~~~~~l~~~~~~~~~ 114 (163)
T smart00267 52 YGHAVGDELLQEVAQRLSSCLRP-----GDLLARLGGDEFA---LLLPET-SLEEAIALAERILQQLREPII 114 (163)
T ss_pred cCchhHHHHHHHHHHHHHHhcCC-----CCEEEEecCceEE---EEecCC-CHHHHHHHHHHHHHHHhCccc
Confidence 44444456667777777554433 2345666555333 334443 778888999999998876433
No 97
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.16 E-value=2.7e+02 Score=19.74 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEE--EeCCeEEEEEEEEeCCC-CCHH
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAY--TFGSHYFVEVDIVLPAS-MPLQ 326 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~--~~G~~~~vev~I~~~~~-~~l~ 326 (367)
.|..+.+|.+.+.++-- .+.+++.. +.+..+++.+.+..|+. .+..
T Consensus 9 ~~Giv~~it~~l~~~g~---nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 57 (74)
T cd04875 9 RPGIVAAVSGFLAEHGG---NIVESDQFVDPDSGRFFMRVEFELEGFDLSRE 57 (74)
T ss_pred CCCHHHHHHHHHHHcCC---CEEeeeeeecCCCCeEEEEEEEEeCCCCCCHH
Confidence 45788999999976433 34455444 45556778888888864 5554
No 98
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=23.84 E-value=5.1e+02 Score=22.84 Aligned_cols=71 Identities=8% Similarity=0.086 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcC-CCCCCcc--eEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CC-CccEEE
Q 017713 278 APEYLQKLTYLCWNHH-KSIRHID--TVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LP-EIERAF 349 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~-~~v~~v~--~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~-~~-~v~~v~ 349 (367)
+++..++|++++.+.. |.+ .-| ++.+..+.++-.|.+.+.=...-.......+.+-+|+.|++ .| +|.+|.
T Consensus 104 ~~~~~~~i~~~l~~~irP~l-~~dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~ 179 (192)
T PRK11190 104 DAPLMERVEYVLQSQINPQL-AGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVR 179 (192)
T ss_pred cHHHHHHHHHHHHhccChhH-HhcCCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEE
Confidence 4467888998886444 433 333 66666653222233333333333345566778899999964 78 776553
No 99
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=23.40 E-value=3.4e+02 Score=20.72 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017713 72 ARSETLAIRISNVANMVLFAAKVYASVKSG 101 (367)
Q Consensus 72 ~~~~~~~l~~s~~~n~~l~i~~~~~~~~s~ 101 (367)
++.|+..-|++....+++.+.-+..+...+
T Consensus 2 R~~E~iL~~Ig~il~il~~~~~l~~~~~~~ 31 (100)
T PF13273_consen 2 RTAEKILGWIGGILGILFGFFGLLIGFFGN 31 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 456788888888888887777777776644
No 100
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional
Probab=23.40 E-value=4.2e+02 Score=21.70 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=54.6
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEE-------EEeCCe----EEEEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 017713 271 SLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRA-------YTFGSH----YFVEVDIVLPASMPLQEAHDIGESLQEKL 339 (367)
Q Consensus 271 ~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~-------~~~G~~----~~vev~I~~~~~~~l~~~~~i~~~l~~~l 339 (367)
.|-+..-.+++.+.+...+.+ .++....++|+ |.+|++ -||.+.+.+-+.-+.++-.++++++-+.+
T Consensus 11 nL~~~~d~~~Ll~~l~~~l~~--sglF~~~~IK~Ra~~~~~y~vgdg~~~~~Fihv~l~i~~GRs~e~k~~l~~~l~~~l 88 (126)
T PRK15031 11 NIREQADLPGLFAKVNQALAA--TGIFPLGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFALI 88 (126)
T ss_pred CccccCCHHHHHHHHHHHHHh--CCCCCccccEeeeeecCcEEEcCCCCCCcEEEEEeeecCCCCHHHHHHHHHHHHHHH
Confidence 344333455678888888864 56666666666 445432 57888888877788898889999998888
Q ss_pred hc-CCCc-----cEEEEEe
Q 017713 340 EL-LPEI-----ERAFVHL 352 (367)
Q Consensus 340 ~~-~~~v-----~~v~Vhv 352 (367)
++ .+.+ ....+++
T Consensus 89 ~~~~~~~~~~~~~~LS~Ei 107 (126)
T PRK15031 89 KAHFAALMESRYLALSFEI 107 (126)
T ss_pred HHHhhhhhcccceEEEEEE
Confidence 74 5555 4445544
No 101
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=22.61 E-value=1.4e+02 Score=27.41 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 329 HDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 329 ~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
..+.|++++-|++.+||-.+.||+-+..
T Consensus 108 ~~~eQ~le~tLs~mDGVi~ArV~I~lp~ 135 (246)
T COG4669 108 YAKEQQLEQTLSKMDGVISARVHISLPE 135 (246)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEEEcCC
Confidence 4467888888889999999999998764
No 102
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=22.49 E-value=2.2e+02 Score=21.77 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=29.0
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecc
Q 017713 312 FVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 355 (367)
Q Consensus 312 ~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~ 355 (367)
.+.+++.+|+..|+++=-.+.+.+.+++++.++|. ..++++.
T Consensus 4 ~l~l~l~lp~~~SLKeKR~vvksl~~klr~rfnvS--vaEv~~~ 45 (90)
T PF04456_consen 4 VLRLELRLPGAHSLKEKRQVVKSLIDKLRNRFNVS--VAEVGHQ 45 (90)
T ss_dssp EEEEEEE----SSHHHHHHHHHHHHHHHHHHSS-E--EEEEE-T
T ss_pred EEEEEEEeccccchhHhHHHHHHHHHHHHhhCCeE--EEEecCC
Confidence 46788889999999999999999999999777874 3445543
No 103
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.05 E-value=90 Score=21.32 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEEe
Q 017713 328 AHDIGESLQEKLELLPEIERAFVHL 352 (367)
Q Consensus 328 ~~~i~~~l~~~l~~~~~v~~v~Vhv 352 (367)
...-++++++.|++.|+|..+.+.+
T Consensus 9 C~~C~~~v~~~l~~~~GV~~v~vd~ 33 (62)
T PF00403_consen 9 CEGCAKKVEKALSKLPGVKSVKVDL 33 (62)
T ss_dssp SHHHHHHHHHHHHTSTTEEEEEEET
T ss_pred cHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 4467789999999999997765544
No 104
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=21.62 E-value=1.3e+02 Score=20.35 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=18.2
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHHH
Q 017713 136 QYPIGKKRMQPLGILVFASVMATLGLQII 164 (367)
Q Consensus 136 ~~p~G~~r~E~l~~li~~~~~~~~~~~i~ 164 (367)
.|.|-|..+. +++++++.+++++|+.++
T Consensus 6 pF~YDy~tLr-igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 6 PFYYDYETLR-IGGLIFAGVLFILGILII 33 (50)
T ss_dssp GGGGCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCccchhHhh-ccchHHHHHHHHHHHHHH
Confidence 4556666655 466777777777777654
No 105
>PRK14630 hypothetical protein; Provisional
Probab=21.21 E-value=4.9e+02 Score=21.71 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 281 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 281 ~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
+.+.++..+.+ -+ ..+.++.....|+...+.+.|.=++..+++++..+.+.+...++.
T Consensus 10 i~~li~~~~~~--~G-~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~ld~ 67 (143)
T PRK14630 10 VYNLIKNVTDR--LG-IEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLILEA 67 (143)
T ss_pred HHHHHHHHHHH--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 34445555532 33 246677776667777788888767779999999999999888865
No 106
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=21.21 E-value=4.5e+02 Score=22.04 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 327 EAHDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 327 ~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
....|.+.++++|+.. +++.+.|.+..+.
T Consensus 40 a~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p 68 (146)
T TIGR02159 40 ALEVIRQDIRDAVRAL-GVEVVEVSTSLDP 68 (146)
T ss_pred hHHHHHHHHHHHHHhc-CCCeEEEeEeeCC
Confidence 4568889999999875 8887777776553
No 107
>PRK12704 phosphodiesterase; Provisional
Probab=21.10 E-value=1.6e+02 Score=30.32 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHh---cCCCccEEEEE
Q 017713 282 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS-MPLQEAHDIGESLQEKLE---LLPEIERAFVH 351 (367)
Q Consensus 282 ~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~-~~l~~~~~i~~~l~~~l~---~~~~v~~v~Vh 351 (367)
.+++..+..+ ++||. ...+.+.|+.+. |.++|+ .+-.++..++++|.++|+ .|||--.|+|-
T Consensus 445 l~~le~i~~~-~~gv~---~~yaiqaGreir----v~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 510 (520)
T PRK12704 445 LEKLEEIANS-FEGVE---KAYAIQAGREIR----VIVKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTVI 510 (520)
T ss_pred HHHHHHHHHh-CCcHH---HHHHHhcCceEE----EEeCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 5556677754 56654 555678887644 445454 778899999999999996 37887666653
No 108
>PHA02975 hypothetical protein; Provisional
Probab=20.93 E-value=3.4e+02 Score=19.71 Aligned_cols=60 Identities=5% Similarity=0.183 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHhhcCCcccccccchhhH-HHHHHHHHHHHHHHHHHHHH
Q 017713 147 LGILVFASVMATLG--LQIILESLRTLVSNEDQFNLTKEQEQW-VVGIMLSVTLVKLLLVVYCR 207 (367)
Q Consensus 147 l~~li~~~~~~~~~--~~i~~esi~~l~~~~~~~~~~~~~~~~-~~~i~~~~~~v~~~l~~~~~ 207 (367)
+.+-++|++|-..- +.=..+.+++.+....+|.-. +..++ .++..+.++++-++++.|.+
T Consensus 4 LYaaiFGvFmsS~DdDF~nFI~vVksVLtdk~~~~~~-~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 4 LFTGTYGVFLESNDSDFEDFIDTIMHVLTGKKEPKKK-SSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHcCCCCCCcC-CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555443321 223456777777776544331 22222 22223333344445555543
No 109
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=20.92 E-value=2.8e+02 Score=23.08 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecc
Q 017713 279 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 355 (367)
Q Consensus 279 ~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~ 355 (367)
++..+.+...+. ..|+|..++.+ .| .+.+-+.+..+ +.+ ++.+-+.+.+.+.|+|.++..++--.
T Consensus 80 ~~~~~~~~~~l~-~~p~V~~~~~~----tG-~~dl~~~v~~~---d~~---~l~~~~~~~l~~~~gV~~~~t~ivl~ 144 (153)
T PRK11179 80 AKDYPSALAKLE-SLDEVVEAYYT----TG-HYSIFIKVMCR---SID---ALQHVLINKIQTIDEIQSTETLISLQ 144 (153)
T ss_pred cccHHHHHHHHh-CCCCEEEEEEc----cc-CCCEEEEEEEC---CHH---HHHHHHHHHhhcCCCeeeEEEEEEEe
Confidence 344566666664 47876654433 23 34444445554 233 45555667888889999887777654
No 110
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=20.83 E-value=4.4e+02 Score=26.01 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=46.1
Q ss_pred hcChhhhHhHHHhhhHHHHHHHHHHHHHHHhh-------hhh-ccchHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 017713 209 FTNEIVKAYAQDHFFDVITNIIGLVAVLLANY-------IDD-WMDPVGAIILALYTIRTWSMTVLENVNSLVG 274 (367)
Q Consensus 209 ~~s~~l~a~~~~~~~D~~~~~~~i~~~~~~~~-------~~~-~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg 274 (367)
.++..+.++..|.++|++.=++++.+--.... ++| ..+-+|+++=+++....-+.++.|++...+.
T Consensus 32 ~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~ 105 (404)
T KOG1483|consen 32 TNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIE 105 (404)
T ss_pred cchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 35668889999999998763322222222221 134 6788888888889888999999999888775
No 111
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.83 E-value=3.1e+02 Score=19.28 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHhhcCCcccccccchhhHHHHHHHHHHH
Q 017713 147 LGILVFASVMATLGLQI---ILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTL 197 (367)
Q Consensus 147 l~~li~~~~~~~~~~~i---~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 197 (367)
++-++.++.++..|.+. +.+.+.+.+.++++ .+..|.++....+.+
T Consensus 5 i~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t-----~~t~~~ligG~va~i 53 (59)
T PF11381_consen 5 IALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPT-----DKTIWYLIGGAVAVI 53 (59)
T ss_pred ehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCC-----chhHHHHHhHHHHHH
Confidence 34456666666666653 55667888887763 333555444444443
No 112
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.47 E-value=2.5e+02 Score=19.28 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=27.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc--cEEEEEe
Q 017713 315 VDIVLPASMPLQEAHDIGESLQEKLELLPEI--ERAFVHL 352 (367)
Q Consensus 315 v~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v--~~v~Vhv 352 (367)
++|.+.+..+.++-.++.+.+.+.+.+..++ +.++|-+
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i 43 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFI 43 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEE
Confidence 4667777789999999999999999753343 3444443
No 113
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=20.31 E-value=6.1e+02 Score=22.44 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhcCCc
Q 017713 160 GLQIILESLRTLVSNED 176 (367)
Q Consensus 160 ~~~i~~esi~~l~~~~~ 176 (367)
.+++.+-....++-++-
T Consensus 173 ~lWi~v~i~t~~lPtsl 189 (226)
T COG4858 173 LLWIAVMIATVFLPTSL 189 (226)
T ss_pred HHHHHHHHHHhhCCCcC
Confidence 33444444556664443
No 114
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=20.14 E-value=2.8e+02 Score=22.88 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=35.5
Q ss_pred CCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 297 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 297 ~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
..+.++.....|.+..+.+.|.=++..+++++.++.+.+...|..
T Consensus 11 ~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 11 LELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp SEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTT
T ss_pred CEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHcc
Confidence 357788999999888888888778789999999999999999975
No 115
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=20.11 E-value=3.7e+02 Score=30.31 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEe-CCeEEEEEEEEeCCCCCHH-HHHHHHHHHHHHHhcCC-Ccc
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQ-EAHDIGESLQEKLELLP-EIE 346 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~-G~~~~vev~I~~~~~~~l~-~~~~i~~~l~~~l~~~~-~v~ 346 (367)
|++..+.|.+-+++...++.++++++.... ...-.+.++.. ++.+.+ ...++.+++++.-.++| +++
T Consensus 54 p~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~--~g~d~~~a~~~V~~~v~~~~~~LP~~v~ 123 (1037)
T PRK10555 54 AQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFK--AGTDPDEAVQQVQNQLQSAMRKLPQAVQ 123 (1037)
T ss_pred HHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEE--CCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 456677788888877888888888888764 22233444443 333433 35566666655445677 443
No 116
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.05 E-value=5.3e+02 Score=23.24 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=21.1
Q ss_pred CCCCCccchhhhhHHHHHHHHHHHHHHHH
Q 017713 135 YQYPIGKKRMQPLGILVFASVMATLGLQI 163 (367)
Q Consensus 135 ~~~p~G~~r~E~l~~li~~~~~~~~~~~i 163 (367)
.++..|-.++|.+..++-+++++++++..
T Consensus 52 ~~~~~~~~~lE~~WtviP~iil~~l~~~s 80 (228)
T MTH00140 52 CRTILEAQKLETIWTIVPALILVFLALPS 80 (228)
T ss_pred CccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 45667888999988887777766655544
No 117
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=20.00 E-value=4.8e+02 Score=29.39 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCC-CCCCcceEEEEEeCCeEEEEEEEEe-CCCCCHHHHHH-HHHHHHHHHhcCCCccEEEE
Q 017713 281 YLQKLTYLCWNHHK-SIRHIDTVRAYTFGSHYFVEVDIVL-PASMPLQEAHD-IGESLQEKLELLPEIERAFV 350 (367)
Q Consensus 281 ~~~~I~~~~~~~~~-~v~~v~~v~~~~~G~~~~vev~I~~-~~~~~l~~~~~-i~~~l~~~l~~~~~v~~v~V 350 (367)
..+++..+. ...| ++ ....+.....++.-...+-+.- ++.++..+..+ ..++++.+|++.|+|.++.+
T Consensus 107 V~~~v~~~~-~~LP~~v-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~ 177 (1037)
T PRK10555 107 VQNQLQSAM-RKLPQAV-QNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDA 177 (1037)
T ss_pred HHHHHHHHH-HhCCCcc-ccCCceEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 344444333 3356 44 2334444444443344444433 23477888888 56889999999999988765
Done!