Query 017713
Match_columns 367
No_of_seqs 243 out of 1769
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 3.8E-54 1.3E-58 407.8 16.8 278 73-357 9-291 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 5.3E-52 1.8E-56 389.5 17.6 274 76-357 3-282 (283)
3 3byp_A CZRB protein; membrane 99.5 6.7E-14 2.3E-18 108.6 10.4 83 271-355 1-86 (94)
4 2zzt_A Putative uncharacterize 99.4 3.6E-13 1.2E-17 107.1 9.4 84 273-357 1-87 (107)
5 3h90_A Ferrous-iron efflux pum 97.6 3.2E-05 1.1E-09 71.5 4.0 94 76-177 111-204 (283)
6 3j1z_P YIIP, cation efflux fam 97.6 4.1E-05 1.4E-09 71.7 4.2 94 76-177 120-213 (306)
7 3cq1_A Putative uncharacterize 71.5 19 0.00066 27.0 7.9 43 312-356 42-85 (103)
8 2jsx_A Protein NAPD; TAT, proo 50.9 72 0.0025 23.6 7.6 64 278-355 15-79 (95)
9 1zpv_A ACT domain protein; str 49.1 50 0.0017 23.4 6.5 75 278-362 15-89 (91)
10 2cvi_A 75AA long hypothetical 48.9 39 0.0013 23.8 5.7 63 282-358 15-79 (83)
11 1uwd_A Hypothetical protein TM 47.2 40 0.0014 25.1 5.8 42 313-356 44-86 (103)
12 3lno_A Putative uncharacterize 46.6 38 0.0013 25.6 5.6 43 313-357 46-90 (108)
13 1ib8_A Conserved protein SP14. 44.3 1E+02 0.0035 25.1 8.3 43 298-340 27-69 (164)
14 3zzp_A TS9, ribosomal protein 42.0 60 0.002 23.0 5.6 68 270-341 7-74 (77)
15 3jtz_A Integrase; four strande 41.5 95 0.0033 22.5 6.9 28 314-341 50-77 (88)
16 2kjw_A TS9, 30S ribosomal prot 40.6 62 0.0021 24.0 5.8 69 270-342 7-75 (96)
17 2dbb_A Putative HTH-type trans 37.2 1.2E+02 0.004 23.8 7.6 67 276-354 76-143 (151)
18 1u8s_A Glycine cleavage system 33.5 1.6E+02 0.0054 24.2 8.0 59 278-342 103-169 (192)
19 1mli_A Muconolactone isomerase 29.2 60 0.0021 24.2 4.0 24 311-334 3-26 (96)
20 2f1f_A Acetolactate synthase i 26.6 2.2E+02 0.0075 23.2 7.5 63 278-349 13-75 (164)
21 3lax_A Phenylacetate-coenzyme 26.0 1.9E+02 0.0066 21.0 9.2 57 284-341 18-76 (109)
22 2cg4_A Regulatory protein ASNC 25.6 1.2E+02 0.0042 23.7 5.7 61 281-354 81-142 (152)
23 2ko1_A CTR148A, GTP pyrophosph 24.2 1.8E+02 0.006 20.0 9.0 63 278-350 15-77 (88)
24 3abf_A 4-oxalocrotonate tautom 23.1 1.3E+02 0.0044 19.5 4.6 41 315-355 4-46 (64)
25 2i52_A Hypothetical protein; s 22.7 69 0.0024 24.9 3.3 29 325-353 40-68 (121)
26 3e6q_A Putative 5-carboxymethy 22.6 2.9E+02 0.01 21.9 7.7 61 279-341 40-111 (146)
27 1rwu_A Hypothetical UPF0250 pr 21.6 2.4E+02 0.0081 21.3 6.2 62 277-346 45-106 (109)
28 1j27_A Hypothetical protein TT 21.4 2.4E+02 0.0082 21.0 6.1 42 312-356 7-48 (102)
29 2ogf_A Hypothetical protein MJ 21.3 81 0.0028 24.5 3.4 29 325-353 45-73 (122)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=3.8e-54 Score=407.82 Aligned_cols=278 Identities=19% Similarity=0.236 Sum_probs=253.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHH
Q 017713 73 RSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVF 152 (367)
Q Consensus 73 ~~~~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~ 152 (367)
...|++.++++++|++++++|+++|+++||.||+||++||++|++++++++++.+.++||++++|||||+|+|+++++++
T Consensus 9 ~~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~ 88 (306)
T 3j1z_P 9 FWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQ 88 (306)
T ss_dssp CCSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH----hcChhhhHhHHHhhhHHHHH
Q 017713 153 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITN 228 (367)
Q Consensus 153 ~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~ 228 (367)
|++++++++++++|+++++++|++. ....+++++++++++++.++++++++ .+|+++++++.|+++|+++|
T Consensus 89 ~~~l~~~~~~i~~eai~~l~~p~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s 163 (306)
T 3j1z_P 89 SAFIMGSAFLLLFYGGERLLNPSPV-----ENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLN 163 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCG-----GGTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhheecCCCc-----cccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhh
Confidence 9999999999999999999998762 23355677888888899998888764 46789999999999999998
Q ss_pred HHHHHHHHHHhhhh-hccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEe
Q 017713 229 IIGLVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF 307 (367)
Q Consensus 229 ~~~i~~~~~~~~~~-~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~ 307 (367)
++ ++.+.++.+++ ||+||++++++++++++.++++++++...|+|++||++..++|++.+. +.|+|.++|++|+|+.
T Consensus 164 ~~-vli~~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~-~~~~V~~vh~l~~~~~ 241 (306)
T 3j1z_P 164 AA-VLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAK-EDPRVLGLHDLRTRQA 241 (306)
T ss_dssp TT-CCCTTSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HSTTBCCCCCBCCEEE
T ss_pred hH-HHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh-cCCCcceeeeEEEEEE
Confidence 54 44455555554 799999999999999999999999999999999999999999999985 5899999999999999
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecccC
Q 017713 308 GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 357 (367)
Q Consensus 308 G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~~ 357 (367)
|+++++++|+++||++|++|+|+|++++|++|++.+++.+++||+||...
T Consensus 242 G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~~ 291 (306)
T 3j1z_P 242 GKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQV 291 (306)
T ss_dssp TTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETTS
T ss_pred CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCC
Confidence 99999999999999999999999999999999876678899999999643
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=5.3e-52 Score=389.46 Aligned_cols=274 Identities=19% Similarity=0.251 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHH
Q 017713 76 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 155 (367)
Q Consensus 76 ~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~ 155 (367)
+|++++++++|++++++|+++|+.+||.||+||++||++|++++++.+++.+.++||++++|||||+|+|++++++.+++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH----hcChhhhHhHHHhhhHHHHHHHH
Q 017713 156 MATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIG 231 (367)
Q Consensus 156 ~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~~~~ 231 (367)
++++++++++|+++++++|++. ....++++++++++++|.++++++++ .+|+++++++.|+++|.+.|+ +
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~-----~~~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~-~ 156 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPM-----TDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNG-A 156 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCC-----CCCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCS-C
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999998762 22245677888899999999988764 578999999999999999974 4
Q ss_pred HHHHHHHhhhh-hccchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCe
Q 017713 232 LVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH 310 (367)
Q Consensus 232 i~~~~~~~~~~-~~~D~i~aiii~~~i~~~~~~~~~~~~~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~ 310 (367)
++.+.++.+++ +|+||++++++++++++.++++++++...|+|++||++..++|++.+.+ .|+|.++|++|+|+.|++
T Consensus 157 vli~~~~~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~-~~~V~~v~~l~~~~~G~~ 235 (283)
T 3h90_A 157 ILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRTRQSGPT 235 (283)
T ss_dssp SCSSSCSCSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-SSSCSEEEEEEEEEETTE
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CCCcccceeeEEEEECCc
Confidence 44555555665 5899999999999999999999999999999999999999999999965 899999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEEEEeecccC
Q 017713 311 YFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYEYT 357 (367)
Q Consensus 311 ~~vev~I~~~~~~~l~~~~~i~~~l~~~l~-~~~~v~~v~Vhvd~~~~ 357 (367)
+++++|+++|++++++|+|++++++|++|+ ++|. .+++||+||+.+
T Consensus 236 ~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~ 282 (283)
T 3h90_A 236 RFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV 282 (283)
T ss_dssp EEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence 999999999999999999999999999997 4665 789999999754
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.52 E-value=6.7e-14 Score=108.56 Aligned_cols=83 Identities=20% Similarity=0.440 Sum_probs=72.8
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcC--CCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccE
Q 017713 271 SLVGRSAAPEYLQKLTYLCWNHH--KSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIER 347 (367)
Q Consensus 271 ~Llg~s~~~~~~~~I~~~~~~~~--~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~-~~~~v~~ 347 (367)
.|+|.+|+++..++|++.+.+ . |+|.++|++|+|+.|+.+++++||++++++++.++|++.+++++.|+ ++|.+ +
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~-~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~ 78 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-Q 78 (94)
T ss_dssp -----CCCHHHHHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-E
T ss_pred CCcCCCCCHHHHHHHHHHHHh-cCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-E
Confidence 378989999999999999965 7 99999999999999999999999999999999999999999999996 46665 9
Q ss_pred EEEEeecc
Q 017713 348 AFVHLDYE 355 (367)
Q Consensus 348 v~Vhvd~~ 355 (367)
++||+||+
T Consensus 79 vtIh~ep~ 86 (94)
T 3byp_A 79 ATIHVEPE 86 (94)
T ss_dssp EEEEEEEC
T ss_pred EEEEeCCC
Confidence 99999985
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.44 E-value=3.6e-13 Score=107.06 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=74.1
Q ss_pred cCCCCCHH--HHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEE
Q 017713 273 VGRSAAPE--YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAF 349 (367)
Q Consensus 273 lg~s~~~~--~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~-~~~~v~~v~ 349 (367)
||.+|+++ ..++|++.+.+ .|+|.+++++|+|+.|+.+++++||++++++++.++|++++++++.|+ ++|.+.+++
T Consensus 1 md~~~~~~~~~~~~I~~~l~~-~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLER-FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTT-CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCccHHHHHHHHHHHHc-CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 46678889 99999999964 899999999999999999999999999999999999999999999997 577799999
Q ss_pred EEeecccC
Q 017713 350 VHLDYEYT 357 (367)
Q Consensus 350 Vhvd~~~~ 357 (367)
||+||...
T Consensus 80 IhvEp~~~ 87 (107)
T 2zzt_A 80 IHVEPLGN 87 (107)
T ss_dssp EEEEETTC
T ss_pred EEEecCCC
Confidence 99999754
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=97.61 E-value=3.2e-05 Score=71.51 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHH
Q 017713 76 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 155 (367)
Q Consensus 76 ~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~ 155 (367)
-.+..+++++|.+++....-.+...+|.++.||+.|...|+++++.++++.... .+|+..++++++++.+++
T Consensus 111 l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~ 182 (283)
T 3h90_A 111 VIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIY 182 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHH
Confidence 446678889999999999988999999999999999999999998877664321 248888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcc
Q 017713 156 MATLGLQIILESLRTLVSNEDQ 177 (367)
Q Consensus 156 ~~~~~~~i~~esi~~l~~~~~~ 177 (367)
++..++.+++++++.|++..++
T Consensus 183 i~~~~~~l~~~s~~~Ll~~~~~ 204 (283)
T 3h90_A 183 ILYSALRMGYEAVQSLLDRALP 204 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999987763
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=97.57 E-value=4.1e-05 Score=71.66 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCccchhhhhHHHHHHHH
Q 017713 76 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 155 (367)
Q Consensus 76 ~~~l~~s~~~n~~l~i~~~~~~~~s~S~aL~adal~s~~D~~s~~i~l~~~~~~~~~~~~~~p~G~~r~E~l~~li~~~~ 155 (367)
-.+...+++.|.+++......+-..+|.++.||+.|...|+++++.++++.-.+. ||+.-++++++++.+++
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~ 191 (306)
T 3j1z_P 120 VVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACY 191 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHH
T ss_pred hhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHH
Confidence 3456677888999999998899999999999999999999999988877654321 58888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcc
Q 017713 156 MATLGLQIILESLRTLVSNEDQ 177 (367)
Q Consensus 156 ~~~~~~~i~~esi~~l~~~~~~ 177 (367)
++..++.++++++..|++..++
T Consensus 192 I~~~~~~l~~~s~~~Ll~~~~~ 213 (306)
T 3j1z_P 192 IGQQAFDLGYRSIQALLDRELD 213 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhCcccc
Confidence 9999999999999999987764
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=71.52 E-value=19 Score=26.96 Aligned_cols=43 Identities=28% Similarity=0.477 Sum_probs=31.7
Q ss_pred EEEEEEEeC-CCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 312 FVEVDIVLP-ASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 312 ~vev~I~~~-~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
.|.+.+.++ +..+. ...+.+.++++++++|++..+.|.+..+.
T Consensus 42 ~V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~V~V~l~~~p 85 (103)
T 3cq1_A 42 RAYVRMTLTTPGCPL--HDSLGEAVRQALSRLPGVEEVEVEVTFEP 85 (103)
T ss_dssp EEEEEECCSSSSCCS--SCHHHHHHHHHHHTSTTCCEEEEEECCSS
T ss_pred EEEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCceeEEEEEecCC
Confidence 455555553 33444 66888999999999999999988887654
No 8
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=50.92 E-value=72 Score=23.56 Aligned_cols=64 Identities=6% Similarity=0.060 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEe-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecc
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 355 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~-G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~ 355 (367)
.|+..+.+...+.. .|++ +++.... ..++.|. ++-+ ...++.+.+ ++|+++|+|.++.....+.
T Consensus 15 ~p~~~~~V~~~L~~-ipgv----Ei~~~~~~~GkiVV~--iEa~------~~~~l~~~i-~~I~~i~GVlst~lvy~~~ 79 (95)
T 2jsx_A 15 KSERISDISTQLNA-FPGC----EVAVSDAPSGQLIVV--VEAE------DSETLIQTI-ESVRNVEGVLAVSLVYHQQ 79 (95)
T ss_dssp CTTSHHHHHHHHTT-STTE----EEEEEETTTTEEEEE--EEES------SHHHHHHHH-HHHTTSTTEEEEEESSCCC
T ss_pred CCCCHHHHHHHHHC-CCCe----EEEEecCCCCCEEEE--EEeC------CHHHHHHHH-HHHhcCCCccEEeEEEEEe
Confidence 55667778877743 6665 2333221 1223332 3232 244666666 8999999999888776664
No 9
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=49.09 E-value=50 Score=23.43 Aligned_cols=75 Identities=4% Similarity=-0.013 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecccC
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 357 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~~ 357 (367)
.|..+.+|...+.++ + ..|.++.....++...+.+.+.+++...+ .++.+++++.-+++ + +.+++.++..
T Consensus 15 rpGila~vt~~la~~--~-~NI~~i~~~~~~~~~~~~i~v~~~~~~~l---~~l~~~L~~~~~~~-~---~~~~~~~~~i 84 (91)
T 1zpv_A 15 KSGIVAGVSGKIAEL--G-LNIDDISQTVLDEYFTMMAVVSSDEKQDF---TYLRNEFEAFGQTL-N---VKINIQSAAI 84 (91)
T ss_dssp CTTHHHHHHHHHHHT--T-CEEEEEEEEEETTEEEEEEEEEESSCCCH---HHHHHHHHHHHHHH-T---EEEEEEEGGG
T ss_pred CCCHHHHHHHHHHHc--C-CCEEEEEeEEEcCEEEEEEEEEeCCCCCH---HHHHHHHHHHHHHc-C---CEEEEeeHHH
Confidence 467788899988663 3 25667766666656778888888754333 45555555433332 2 4466666544
Q ss_pred CCCcC
Q 017713 358 HRPEH 362 (367)
Q Consensus 358 ~~~eh 362 (367)
.+..|
T Consensus 85 f~~~~ 89 (91)
T 1zpv_A 85 FEAMY 89 (91)
T ss_dssp TC---
T ss_pred HHHhh
Confidence 44444
No 10
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=48.86 E-value=39 Score=23.83 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCCCcceEEEEEe-CCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeecccCC
Q 017713 282 LQKLTYLCWNHHKSIRHIDTVRAYTF-GSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTH 358 (367)
Q Consensus 282 ~~~I~~~~~~~~~~v~~v~~v~~~~~-G~~-~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~~~ 358 (367)
.+++.+.+.+ .|+|..+ +.. |+. +.+.+. .+ +.+ ++.+-+.++|.+.|+|.++...+-.+..|
T Consensus 15 ~~~~~~~l~~-~peV~e~-----~~vtG~~D~ll~v~--~~---d~~---~l~~~i~~~l~~~~gV~~~~T~ivl~~~~ 79 (83)
T 2cvi_A 15 EREVMEKLLA-MPEVKEA-----YVVYGEYDLIVKVE--TD---TLK---DLDQFITEKIRKMPEIQMTSTMIAILEHH 79 (83)
T ss_dssp HHHHHHHHHT-STTEEEE-----EECBSSCSEEEEEE--ES---SHH---HHHHHHHTTGGGCTTEEEEEEEEEEEETT
T ss_pred HHHHHHHHhC-CCCeeEE-----EEEcccCCEEEEEE--EC---CHH---HHHHHHHHHhccCCCEeEEEEEEEEehhc
Confidence 4566666644 7876644 444 544 555444 43 344 34444556788899999888887765443
No 11
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=47.16 E-value=40 Score=25.07 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=31.3
Q ss_pred EEEEEEeC-CCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 313 VEVDIVLP-ASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 313 vev~I~~~-~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
|.+.+.++ +..+. ...+.+.+++++++++++..+.|.+..+.
T Consensus 44 V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~v~V~l~~~p 86 (103)
T 1uwd_A 44 VKVLMTMTTPMCPL--AGMILSDAEEAIKKIEGVNNVEVELTFDP 86 (103)
T ss_dssp EEEEECCSSSCCSS--HHHHHHHHHHHHHTSSSCCEEEEEECCSS
T ss_pred EEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCcceEEEEEecCC
Confidence 44555553 33443 67899999999999999999988887654
No 12
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=46.59 E-value=38 Score=25.56 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=31.1
Q ss_pred EEEEEEeC-CCCCHHHHHHHHHHHHHHH-hcCCCccEEEEEeecccC
Q 017713 313 VEVDIVLP-ASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDYEYT 357 (367)
Q Consensus 313 vev~I~~~-~~~~l~~~~~i~~~l~~~l-~~~~~v~~v~Vhvd~~~~ 357 (367)
|.+.+.+. +..+. ...+.+.+++++ +++|++..+.|++..+..
T Consensus 46 V~V~ltlt~p~cp~--~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p~ 90 (108)
T 3lno_A 46 AVITMTMTSIGCPM--AGQIVSDVKKVLSTNVPEVNEIEVNVVWNPP 90 (108)
T ss_dssp EEEEECCSCTTCTT--HHHHHHHHHHHHHHHCTTCCCEEEEECCSSC
T ss_pred EEEEEEECCCCCcH--HHHHHHHHHHHHHHhCCCCceEEEEEEecCC
Confidence 34444442 33444 568999999999 889999999999887653
No 13
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=44.27 E-value=1e+02 Score=25.14 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=37.6
Q ss_pred CcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh
Q 017713 298 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE 340 (367)
Q Consensus 298 ~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~ 340 (367)
.+.++...+.|+...+.+.|.-++..+++++.++.+.+...|.
T Consensus 27 eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 27 ELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4667888788888888888888888999999999999999997
No 14
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=42.04 E-value=60 Score=23.02 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=48.3
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 270 NSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 270 ~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
..|+.-.++++..+.+.+... -.+.|.. ..+.+....-.-|+-+.++|+++-++.....++++..|.+
T Consensus 7 Yvl~~~~a~~~~i~Eler~~r-ine~VlR---~l~vr~d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELR-IRDNVRR---VMVVASTTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHH-TSTTEEE---EEEEECSSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhC-CCHHHHH---HHHHhccCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 345555678999999999884 4555543 3333343333456677789999999999999999998864
No 15
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=41.49 E-value=95 Score=22.46 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 314 EVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 314 ev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
.+.+--=|++|+++|-+.+++++..+.+
T Consensus 50 ~~~LG~yp~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 50 RIALGAYPAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHHHc
Confidence 3445556889999999999999999875
No 16
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=40.58 E-value=62 Score=24.05 Aligned_cols=69 Identities=19% Similarity=0.103 Sum_probs=52.6
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017713 270 NSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 342 (367)
Q Consensus 270 ~~Llg~s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~ 342 (367)
..++.-.+|++..+.+.+.+ +-.+.|..+-.+++-. --.=|+-+.++|+++-++...+.++++..|.+.
T Consensus 7 Y~~~~~~a~~~~v~eler~~-r~~e~vlR~l~v~~e~---Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~ 75 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLAREL-RIRDNVRRVMVVASTT---PGRYEVNIVLNPNLDQSQLALEKEIIQRALENY 75 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHH-HHCTTCSEEEEEECSS---SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHh-ccchhhhhhhheehhh---hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhC
Confidence 44667778999999999988 4567777666666553 123456667999999999999999999999753
No 17
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=37.22 E-value=1.2e+02 Score=23.76 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeec
Q 017713 276 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 354 (367)
Q Consensus 276 s~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~-~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~ 354 (367)
..++...+++.+.+. ..|+|..++.+ .|+. +.+.+..- + +.+ ++.+-+.+.|.+.|+|.++..++--
T Consensus 76 ~~~~~~~~~~~~~l~-~~peV~~~~~v----tG~~d~~~~v~~~-~---d~~---~l~~~~~~~l~~~~gV~~~~t~ivl 143 (151)
T 2dbb_A 76 SKVPSDADKVISEIS-DIEYVKSVEKG----VGRYNIIVRLLLP-K---DIK---DAENLISEFLQRIKNAENVEVILIS 143 (151)
T ss_dssp ESSHHHHHHHHHHHT-TCTTEEEEEEE----ESSCSEEEEEEEE-S---SHH---HHHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred EeCCCCHHHHHHHHH-cCCCeEEEeEe----cCCCCEEEEEEEc-C---CHH---HHHHHHHHHhhcCCCeeEEEEEEEE
Confidence 456666677777774 47877655433 4554 55554431 2 234 3444455678888999877666543
No 18
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=33.52 E-value=1.6e+02 Score=24.20 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeC--------CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFG--------SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 342 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G--------~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~ 342 (367)
.|..+.+|.+.+.++- ..|.+++....+ +.+++.+.+.++++.+ ..++.+++....+++
T Consensus 103 ~~Gil~~v~~~l~~~~---~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~---~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 103 KLGLTEKFTQFFAQRQ---IGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCN---LMQLQEEFDALCTAL 169 (192)
T ss_dssp CTTHHHHHHHHHHHTT---CCEEEEEEEEEC--------CEEEEEEEEEECTTSC---HHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHcC---CcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCC---HHHHHHHHHHHHHHh
Confidence 4678899999997632 346666666543 2477888888775443 345666666555553
No 19
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=29.24 E-value=60 Score=24.18 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHH
Q 017713 311 YFVEVDIVLPASMPLQEAHDIGES 334 (367)
Q Consensus 311 ~~vev~I~~~~~~~l~~~~~i~~~ 334 (367)
+.|++++.+|++++.++..++..+
T Consensus 3 FlV~m~V~~P~~~~~~~~~~~~a~ 26 (96)
T 1mli_A 3 FHVKMTVKLPVDMDPAKATQLKAD 26 (96)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHH
Confidence 679999999999999998887654
No 20
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=26.60 E-value=2.2e+02 Score=23.16 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEE
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAF 349 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~ 349 (367)
.|..+.+|..++.+ .+ .++.++.+....+.-...+.+.++++ .+..+++.++|+++++|.+|.
T Consensus 13 rpGvLarIt~lfs~--rg-~NI~Sl~v~~t~d~~~sriti~V~~d------~~~leqI~kqL~Kl~dV~~V~ 75 (164)
T 2f1f_A 13 ESGALSRVIGLFSQ--RG-YNIESLTVAPTDDPTLSRMTIQTVGD------EKVLEQIEKQLHKLVDVLRVS 75 (164)
T ss_dssp CTTHHHHHHHHHHT--TT-CCCSEEEEEECSCSSEEEEEEEEESC------HHHHHHHHHHHHHSTTEEEEE
T ss_pred CCcHHHHHHHHHHH--CC-CCeeeceeeecCCCCEEEEEEEEecc------HHHHHHHHHHHcCCCCEEEEE
Confidence 45778999998854 34 36888888766532233344455433 466678888999999987664
No 21
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=25.99 E-value=1.9e+02 Score=21.01 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHhc
Q 017713 284 KLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS--MPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 284 ~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~--~~l~~~~~i~~~l~~~l~~ 341 (367)
.|+..+.+ +|+|....-+-+..-+..-.+.+.++..+. .+..+..++.+++++.+++
T Consensus 18 eIE~vl~~-~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~ 76 (109)
T 3lax_A 18 QIETILLQ-FKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKD 76 (109)
T ss_dssp HHHHHHHT-CTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHH
Confidence 34555644 788876655555666666666666776554 3456677888888888864
No 22
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=25.58 E-value=1.2e+02 Score=23.70 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCCCCcceEEEEEeCCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeec
Q 017713 281 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 354 (367)
Q Consensus 281 ~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~-~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~ 354 (367)
..+.+.+.+.+ .|+|..++.+ .|+. +.+.+. .+ +.+ ++.+-+.+.|.+.|+|.+...++-.
T Consensus 81 ~~~~~~~~l~~-~peV~~~~~v----tG~~d~~~~v~--~~---d~~---~l~~~l~~~l~~~~gV~~~~t~ivl 142 (152)
T 2cg4_A 81 DYPSALAKLES-LDEVTEAYYT----TGHYSIFIKVM--CR---SID---ALQHVLINKIQTIDEIQSTETLIVL 142 (152)
T ss_dssp GHHHHHHHHHT-CTTEEEEEEE----SSSCSEEEEEE--ES---CHH---HHHHHHHHTTTTSTTEEEEEEEECS
T ss_pred CHHHHHHHHhC-CcCeEEEEEE----ecccCEEEEEE--EC---CHH---HHHHHHHHHhhcCCCeeEEEEEEEE
Confidence 45677777754 7887665432 4543 555544 43 334 4444455678888999887766644
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=24.21 E-value=1.8e+02 Score=19.97 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 017713 278 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 350 (367)
Q Consensus 278 ~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~V 350 (367)
.|..+.+|...+.+ .+ .++.++.....++...+.+.+.++. .. -.+++.++|++.++|.++..
T Consensus 15 r~G~L~~I~~~la~--~~-inI~~i~~~~~~~~~~~~i~v~~~~---~~----~l~~l~~~L~~~~~V~~v~~ 77 (88)
T 2ko1_A 15 KNGMTNQITGVISK--FD-TNIRTIVLNAKDGIFTCNLMIFVKN---TD----KLTTLMDKLRKVQGVFTVER 77 (88)
T ss_dssp CTTHHHHHHHHHTT--SS-SCEEEEEEEECSSEEEEEEEEEESS---HH----HHHHHHHHHTTCTTEEEEEE
T ss_pred CCcHHHHHHHHHHH--CC-CCeEEEEEEEcCCEEEEEEEEEECC---HH----HHHHHHHHHhcCCCceEEEE
Confidence 35678889988854 33 3577777766655344555555542 22 23477788899999977643
No 24
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=23.11 E-value=1.3e+02 Score=19.48 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=27.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhcCCC--ccEEEEEeecc
Q 017713 315 VDIVLPASMPLQEAHDIGESLQEKLELLPE--IERAFVHLDYE 355 (367)
Q Consensus 315 v~I~~~~~~~l~~~~~i~~~l~~~l~~~~~--v~~v~Vhvd~~ 355 (367)
++|.+.+..+.++-.++.+++.+.+.+..+ -+++.|.++..
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~ 46 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEV 46 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEc
Confidence 344444456888888888888888865222 35777777654
No 25
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=22.73 E-value=69 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEEee
Q 017713 325 LQEAHDIGESLQEKLELLPEIERAFVHLD 353 (367)
Q Consensus 325 l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd 353 (367)
.+.++.+.+.+++.++..|.++++.|+++
T Consensus 40 ~eta~sLE~AIE~si~~QP~v~~v~V~I~ 68 (121)
T 2i52_A 40 SENASMAEEFIERSTMIQPFVENVRISIN 68 (121)
T ss_dssp TTTHHHHHHHHHHHHTTSTTEEEEEEEEC
T ss_pred cccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 35677788889999998999999999998
No 26
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=22.57 E-value=2.9e+02 Score=21.93 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCcceEEE-------EEeCC----eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 017713 279 PEYLQKLTYLCWNHHKSIRHIDTVRA-------YTFGS----HYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 341 (367)
Q Consensus 279 ~~~~~~I~~~~~~~~~~v~~v~~v~~-------~~~G~----~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~ 341 (367)
+++.+.|...+.+ .+.....++|+ |.+|+ .-++.+.|.+-+.-|.++-.++++++.+.+.+
T Consensus 40 ~~l~~~vh~al~~--~g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~ 111 (146)
T 3e6q_A 40 GELLEQANAALFA--SGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQALGESLCEVLAG 111 (146)
T ss_dssp HHHHHHHHHHHHH--TTSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 4678888888876 23334445544 34443 25777777776777999999999999999964
No 27
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=21.60 E-value=2.4e+02 Score=21.34 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCcceEEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 017713 277 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 346 (367)
Q Consensus 277 ~~~~~~~~I~~~~~~~~~~v~~v~~v~~~~~G~~~~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~ 346 (367)
..+++.+.|..++.++.|+=..+ ..|--+-|...-+.+.|.+. +-++..+ +-++|.+.|+|.
T Consensus 45 a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~---S~eQv~a----iY~~L~~~~~Vk 106 (109)
T 1rwu_A 45 ALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT---HIEQVET----LYEELGKIDIVR 106 (109)
T ss_dssp CCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS---SHHHHHH----HHHHHSCSSSCE
T ss_pred CcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC---CHHHHHH----HHHHHhcCCCEE
Confidence 35678899999998888841222 33433335555577776664 4454444 445566666664
No 28
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=21.41 E-value=2.4e+02 Score=21.02 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.3
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEeeccc
Q 017713 312 FVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 356 (367)
Q Consensus 312 ~vev~I~~~~~~~l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd~~~ 356 (367)
.+++++.++ .-|++|=-.+.+.+.+++++.++|.= -+++...
T Consensus 7 ~l~~~l~l~-~~SLKeKR~vvksl~~rlr~rFnVSv--AEv~~qD 48 (102)
T 1j27_A 7 LYTARLETP-ARSLKEKRALIKPALERLKARFPVSA--ARLYGLD 48 (102)
T ss_dssp EEEEEEECC-CSSHHHHHHHHHHHHHHHHHHSSCEE--EEEECTT
T ss_pred EEEEEEEEe-CCChHHhHHHHHHHHHHHhhcCCeEE--EEecCcc
Confidence 467888888 88999999999999999987778843 3445543
No 29
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=21.27 E-value=81 Score=24.48 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEEee
Q 017713 325 LQEAHDIGESLQEKLELLPEIERAFVHLD 353 (367)
Q Consensus 325 l~~~~~i~~~l~~~l~~~~~v~~v~Vhvd 353 (367)
.+.++.+.+.+++.++..|.++++.|+++
T Consensus 45 ~eta~sLE~AIE~si~~QP~v~~v~V~I~ 73 (122)
T 2ogf_A 45 KYNKESLERAIEEAMKNQPCVYDIKVKIR 73 (122)
T ss_dssp TTTHHHHHHHHHHHHHTSTTEEEEEEEEC
T ss_pred cccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 35677788889999998999999999997
Done!