RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017713
(367 letters)
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 146 bits (371), Expect = 2e-41
Identities = 77/299 (25%), Positives = 154/299 (51%), Gaps = 20/299 (6%)
Query: 63 MTKEERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFIL 122
M +EER L R A IS N+ L K+ A + +GS+A++A + SL D+++ I+
Sbjct: 2 MMEEERLKLVRR---AALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIV 58
Query: 123 WFT-AFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLT 181
S + P+ +P G + + L L+ + ++ G +I+LE+++ L+S +
Sbjct: 59 LIGLRISSKPPD-RDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQ-----P 112
Query: 182 KEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDVITNIIGLVAVLL 237
E +G+ L ++K L Y R ++ + A A H DV+T++ LV +L
Sbjct: 113 VEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLG 172
Query: 238 A--NYIDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKS 295
+ + W+DP+ A++++LY ++T E+VN L+ + PE L+K+ + +
Sbjct: 173 SLLGWP--WLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGV 230
Query: 296 IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLD 353
+ +R GS F++V I + + L+EAH+I + +++++ + P++ +H++
Sbjct: 231 KG-VHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVE 288
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 145 bits (369), Expect = 2e-41
Identities = 69/279 (24%), Positives = 135/279 (48%), Gaps = 15/279 (5%)
Query: 88 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPL 147
+L K+ A + +GSLA++A L SL+DLLS + P ++P G R++PL
Sbjct: 1 LLALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPL 60
Query: 148 GILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 207
L+ + ++ +G+ I+ ES+ L+S E+ ++ + L +V LLL +Y R
Sbjct: 61 AALIVSLLLLGVGVFILYESIERLISPEEIEPG------GILLVALISLVVNLLLALYLR 114
Query: 208 ------AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDD-WMDPVGAIILALYTIRT 260
+ ++A A DV+ ++ L+ +LL DP+ ++++AL + T
Sbjct: 115 RAGRKIGKKSSALRADALHALVDVLGSLAVLIGLLLILLTGLPIADPLASLLIALLILYT 174
Query: 261 WSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLP 320
+ E+++ L+G S PE + ++ + + +R + G YFV++ I +
Sbjct: 175 GLRLLKESLSELLGASPDPELVDEIRDAL-EKLPGVLGVHDLRVWKSGPKYFVDIHIEVD 233
Query: 321 ASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDYEYTH 358
+ ++EAH+I + ++ L E P I +H++
Sbjct: 234 PDLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAPEV 272
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 97.3 bits (243), Expect = 3e-23
Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 26/281 (9%)
Query: 88 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPL 147
+L K+ + SGSLA++A + SL D+ + I + P ++P G R + L
Sbjct: 1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEIL 60
Query: 148 GILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 207
L+ + + L I+ E++ L++ E + ++ + + +V L+L +Y
Sbjct: 61 AALLNGLFLVVVALFILYEAIERLINPEPE-----IDGGTMLIVAIVGLIVNLILALYLH 115
Query: 208 AFT----NEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSM 263
+ ++A A D ++++ L+ LL + W DP+ A++++L + +
Sbjct: 116 RVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHWADPIAALLISLLILY-TAF 174
Query: 264 TVL-ENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF-------GSHYFVEV 315
+L E++N L+ + E L+++ K+I I V+ F++V
Sbjct: 175 RLLKESINVLLDAAPDEEDLEEIK-------KAILSIPGVKGVHDLHIWRIGPGKLFLDV 227
Query: 316 DIVLPASMPLQEAHDIG-ESLQEKLELLPEIERAFVHLDYE 355
+V+ + L++AHDI E +E L+ P IE + ++
Sbjct: 228 HVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 50.4 bits (121), Expect = 5e-07
Identities = 60/275 (21%), Positives = 126/275 (45%), Gaps = 12/275 (4%)
Query: 70 NLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFI-LWFTAFS 128
+ AR + A + +L K++A +GS++++A+ +DSL+D+ + L +S
Sbjct: 4 SYARLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYS 63
Query: 129 MQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWV 188
+Q P ++ G + + L L + ++ L + L ++ L+S + V
Sbjct: 64 LQ-PADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMND--PGVGIIV 120
Query: 189 VGIMLSVTLVKLLLVVYCRAFTNEI-VKAYAQD--HF-FDVITNIIGLVAVLLANYIDDW 244
+ L TL+ LV + R + +A D H+ DV+ N L+A+ L+ Y
Sbjct: 121 TLVALICTLI---LVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHR 177
Query: 245 MDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRA 304
D + A+ + +Y + + E V SL+ R+ E Q++ + + + +R
Sbjct: 178 ADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRT 236
Query: 305 YTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL 339
G F+++ + + ++PL +AH I + +++ L
Sbjct: 237 RQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQAL 271
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 314
Score = 50.5 bits (121), Expect = 5e-07
Identities = 48/281 (17%), Positives = 99/281 (35%), Gaps = 40/281 (14%)
Query: 75 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDL-LSGFILWFTAFSMQTPN 133
E L +RIS ++ A + + SGS++II + SL+D ++ L + + P
Sbjct: 18 EQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPR 77
Query: 134 PYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIML 193
++P G ++PL + + +++A L L ++ +L +L+ + + L
Sbjct: 78 DARFPYGFWHLEPLVLAINGTLLALLCLYALINALGSLLDGGREVEPG-----HAIAYTL 132
Query: 194 SVTLVKLLLVVY----CRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYID----DWM 245
+ R + ++ + + VA A + +
Sbjct: 133 VSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTKFAHL 192
Query: 246 ----DPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHID- 300
DP+ ++ L I TV + ++ P LQ+ H
Sbjct: 193 VVYADPMVLALVCLVFIPLPLGTVKSALREIL--LMTPNELQQ---------SIESHAHE 241
Query: 301 TVRAYTFGSHY----------FVEVDIVLPASMPLQEAHDI 331
V Y F S++ F+E+ ++P + D
Sbjct: 242 IVEKYGFPSYHVYVARVGRGLFIEIHFIIPRESDARNVEDW 282
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 49.2 bits (118), Expect = 1e-06
Identities = 53/292 (18%), Positives = 119/292 (40%), Gaps = 34/292 (11%)
Query: 78 AIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLS-GFILWFTAFSMQTPNPYQ 136
+ I+ + N+ ++ + +GSLA++A L L D L+ L + + +
Sbjct: 23 RLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATK-R 81
Query: 137 YPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIM---L 193
+ G KR++ L + A ++ + L I+ E+++ L ++ + L
Sbjct: 82 FTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRL------LAPPPIHYSGMLVVAIIGL 135
Query: 194 SVTLVKLLLVVYCRAFTNEIVKAYAQDHFF-DVITNIIGLVAVLLANYID-DWMDPVGAI 251
V LV LL+ + AY H D + ++ ++A ++ + W+DP+ +I
Sbjct: 136 VVNLVSALLLHKGHEENLNMRGAYL--HVLGDALGSVGVIIAAIVIRFTGWSWLDPILSI 193
Query: 252 ILALYTI-RTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYT---- 306
++AL + W + E++N L+ + K+ +++ I V +
Sbjct: 194 VIALLILSSAWPLLK-ESLNILLEGVPEGIDIDKV-------REALLRIPGVASVHDLHV 245
Query: 307 ---FGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 355
G + + + +V+ + +A + + +L IE + L+ E
Sbjct: 246 WSITGGEHALTLHVVVD---EVADADAALDQIVRRLLEKYGIEHVTIQLETE 294
>gnl|CDD|213771 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream
region protein. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed so far only in
the Chlamydiae, always as part of a two-gene operon,
upstream of the homolog of GcvH. Its function is unknown
[Unknown function, General].
Length = 686
Score = 31.0 bits (70), Expect = 1.2
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 161 LQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQD 220
IL L ++ L+ ++ + GI V L K+LL NE++ Y+QD
Sbjct: 464 PGRILSELAQQEQKSEEVFLSAGKDSLLPGIQDGVRLAKVLL-------QNEVLDYYSQD 516
Query: 221 --HFFDVITN 228
+++ +I
Sbjct: 517 DEYYYTIIVK 526
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 29.1 bits (65), Expect = 3.7
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 27/123 (21%)
Query: 104 AIIASTLDSLLDLLSGFILW-FTAFSMQTPNPYQYPIGKKRMQPLGI--LVFASVMATLG 160
AII ++++SL SGF+++ F + Q N PIG G+ +++ +ATL
Sbjct: 287 AIITTSINSLTSFFSGFVVFSFLGYMAQKHN---VPIGDVAKDGPGLIFIIYPEAIATLP 343
Query: 161 LQII--------------------LESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKL 200
L + +ES+ T + +E +F L + +E + + I+LS L+ L
Sbjct: 344 LSSVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEFKF-LHRHRELFTLFIVLSTFLISL 402
Query: 201 LLV 203
V
Sbjct: 403 FCV 405
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 29.3 bits (67), Expect = 3.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 152 FASVMATLGLQI-ILESLRTLVSNED 176
FAS A+LG ++ I+E+L ++ ED
Sbjct: 187 FASAYASLGAEVTIVEALPRILPGED 212
>gnl|CDD|215923 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.
Length = 182
Score = 28.2 bits (63), Expect = 4.5
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 29 GPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTK 65
+ +Y+ + +++ + N +D LA G P K
Sbjct: 93 LSGLSQDDYFSKALKLKDKLNLLDILASAGIKPSDGK 129
>gnl|CDD|224039 COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid
transport and metabolism].
Length = 431
Score = 29.1 bits (66), Expect = 4.5
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 14/115 (12%)
Query: 16 IEWLVLQLLV-LLGGPEDNVAEYYQQQVQ--MLEGFNEMDALAERGF---VPGMTKEERE 69
+ LV+ ++ G Y Q LEG+ MDALA F + K +
Sbjct: 157 LLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGV 216
Query: 70 NLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLS--GFIL 122
+ + + +L A +Y SL + +T S L + G IL
Sbjct: 217 TTKKQIIKYTIKAGLIAAILLAL-IY-----LSLFYLGATSASAAGLAANGGQIL 265
>gnl|CDD|234772 PRK00458, PRK00458, S-adenosylmethionine decarboxylase proenzyme;
Provisional.
Length = 127
Score = 27.7 bits (62), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 72 ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDS 112
R E + + +ANM L K + K G +++IA L+S
Sbjct: 35 ERLEQIVKEAAKIANMTLLDIKSWKFGKKGGVSVIALVLES 75
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in
eukaryotes is mediated by at least in part by the
budding and fusion of intracellular transport vesicles
that selectively carry cargo proteins and lipids from
donor to acceptor organelles. The two main classes of
vesicular carriers within the endocytic and the
biosynthetic pathways are COP- and clathrin-coated
vesicles. Formation of COPII vesicles requires the
ordered assembly of the coat built from several
cytosolic components GTPase Sar1, complexes of
Sec23-Sec24 and Sec13-Sec31. The process is initiated by
the conversion of GDP to GTP by the GTPase Sar1 which
then recruits the heterodimeric complex of Sec23 and
Sec24. This heterodimeric complex generates the
pre-budding complex. The final step leading to membrane
deformation and budding of COPII-coated vesicles is
carried by the heterodimeric complex Sec13-Sec31. The
members of this CD belong to the Sec23-like family. Sec
24 is very similar to Sec23. The Sec23 and Sec24
polypeptides fold into five distinct domains: a
beta-barrel, a zinc finger, a vWA or trunk, an all
helical region and a carboxy Gelsolin domain. The
members of this subgroup carry a partial MIDAS motif and
have the overall Para-Rossmann type fold that is
characteristic of this superfamily.
Length = 244
Score = 28.4 bits (64), Expect = 5.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 95 YASVKSGSLAIIASTLDSLLDLLSGF 120
Y ++KSG LA L S LD L G
Sbjct: 14 YNAIKSGLLATACEALLSNLDNLPGD 39
>gnl|CDD|237123 PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.
Length = 182
Score = 27.4 bits (61), Expect = 8.3
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 31/97 (31%)
Query: 258 IRTWSMTVLENV--NSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEV 315
+RTW M++L N + L R R D + V
Sbjct: 55 LRTWLMSILHNAFIDELRRRRVEA-----------------RRADELA---------VLA 88
Query: 316 DIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 352
D LPA+ QE +++ LPE +RA +HL
Sbjct: 89 DASLPAA---QEHAVRLAQIRDAFFDLPEEQRAALHL 122
>gnl|CDD|233061 TIGR00629, uvde, UV damage endonuclease UvdE. All proteins in this
family for which functions are known are UV dimer
endonucleases that function in an alternative nucleotide
excision repair process. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 312
Score = 28.0 bits (62), Expect = 9.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 288 LCWNHHKSIRHID-TVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLP 343
L WN I + + F SH V D+V A L+E ++ ++ Q +L P
Sbjct: 58 LHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTFHP 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,966,083
Number of extensions: 1868286
Number of successful extensions: 1998
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1972
Number of HSP's successfully gapped: 44
Length of query: 367
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 269
Effective length of database: 6,590,910
Effective search space: 1772954790
Effective search space used: 1772954790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.7 bits)