RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017713
(367 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 144 bits (366), Expect = 6e-41
Identities = 56/284 (19%), Positives = 122/284 (42%), Gaps = 14/284 (4%)
Query: 76 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFI-LWFTAFSMQTPNP 134
+ A + +L K++A +GS++I+A+ +DSL+D+ + L +S+Q +
Sbjct: 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD 62
Query: 135 YQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLS 194
+ G + + L L + ++ L + L ++ L+S V + +
Sbjct: 63 -NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPT-----PMTDPGVGVIVTIV 116
Query: 195 VTLVKLLLVVYCRAFTNEI----VKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGA 250
+ ++LV + R V+A + DV+ N L+A+ L+ Y D + A
Sbjct: 117 ALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFA 176
Query: 251 IILALYTIRT-WSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS 309
+ + +Y + + M E V SL+ R+ E Q++ + + +R G
Sbjct: 177 LGIGIYILYSALRM-GYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGP 234
Query: 310 HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 353
F+++ + + S+PL +AH + + +++ + +H D
Sbjct: 235 TRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 59.4 bits (144), Expect = 2e-11
Identities = 14/63 (22%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 292 HHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFV 350
++ + VR G+ YF+E+DI + M +++AH++ +++++ + +IE +
Sbjct: 21 RFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTI 80
Query: 351 HLD 353
H++
Sbjct: 81 HVE 83
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 57.3 bits (139), Expect = 7e-11
Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 272 LVGRSAAPEYLQKLTYLCWNHHKS-IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHD 330
L+ PE ++++ + + ++ G F+E +V+ P++EAH
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 331 IGESLQEKL-ELLPEIERAFVHLDYEYTHRPEHAQAH 366
+ + L+ L + P ++ A +H++ PE +
Sbjct: 62 LCDELERALAQAFPGLQ-ATIHVE------PEGERKR 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 8e-07
Identities = 48/408 (11%), Positives = 109/408 (26%), Gaps = 99/408 (24%)
Query: 11 SLNFSIEWLVLQLLVLLGGPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTKEEREN 70
L + ++L+ + P Y +Q+ ++ +N+ A+ V +
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKY-NVS--RLQPYLK 139
Query: 71 LARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ 130
L + + N+++ S K+ +A+ + + I W
Sbjct: 140 L---RQALLELRPAKNVLIDGVL--GSGKT-WVALDVCLSYKVQCKMDFKIFWLN----- 188
Query: 131 TPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQ-EQWVV 189
+ P +L ++ L QI + + + L + +
Sbjct: 189 --------LKNCN-SPETVL---EMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 190 GIMLSVTLVKLLLV---VYCRAFTNEIVKAYAQDHFFD------VITNIIGLVAVLLANY 240
++ S LLV V + A F+ + T + L A
Sbjct: 236 RLLKSKPYENCLLVLLNVQ----NAKAWNA------FNLSCKILLTTRFKQVTDFLSAAT 285
Query: 241 -----IDDWMDPV----GAIILALYTIRTWSMTVLE------NVN----SLVGRS----- 276
+D + +L Y + N S++ S
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 277 AAPEYLQKLTYLCWNHHKSIRH-IDTVRAYTFGSHY-----FVE-VDI---VLP---ASM 323
A + + C I ++ + + + F I +L +
Sbjct: 342 ATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 324 PLQEAHDIGESLQEK--LELLPEIERAFVH---LDYEYTHRPEHAQAH 366
+ + L + +E P+ + L+ + H
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK-VKLENEYALH 446
Score = 34.4 bits (78), Expect = 0.069
Identities = 29/245 (11%), Positives = 74/245 (30%), Gaps = 72/245 (29%)
Query: 149 ILVFA-SVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 207
+ VF + + + + + ++++S E+ ++ ++ V+ L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA--------VSGTLRLFWTLLS 73
Query: 208 AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWM---------DPVGAIILALYTI 258
E+V+ + ++ VL NY ++ P + +
Sbjct: 74 K-QEEMVQKFVEE--------------VLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 259 -RTWS-------MTV--LENVNSLVGRSAAPEYLQKLTYLCWNHH------KSIRHIDTV 302
R ++ V L+ L R A E L+ + K+ +D
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKL--RQALLE-LRPAKNVLI--DGVLGSGKTWVALDVC 171
Query: 303 RAYTFGSHYFVEVDIVLPASMPLQEAH--DIGESLQEKLELLPEIERAFVHLDYEYTHRP 360
+Y ++ ++ +L +++ +D +T R
Sbjct: 172 LSYKVQCKMDFKI-------------FWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 361 EHAQA 365
+H+
Sbjct: 218 DHSSN 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.015
Identities = 53/335 (15%), Positives = 105/335 (31%), Gaps = 124/335 (37%)
Query: 61 PGMTKEEREN--LAR----------SETLAIRISN-VAN-----MVLFAAK--------- 93
GM + + A+ +T I + V N + F +
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 94 ---VYASVKSGSLAIIASTLDSLLDLLSGFI-------LWFTAFSMQTPNPYQYP----I 139
++ ++ G L + + + + L T F T Q P +
Sbjct: 1689 SAMIFETIVDGKLK-TEKIFKEINEHSTSYTFRSEKGLLSATQF---T----Q-PALTLM 1739
Query: 140 GK---KRMQPLGILVFASVMA--TLGLQIILE-SLRTLVSNEDQFNLTKEQEQWVVGIML 193
K + ++ G++ + A +LG E + L S + +M
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG-----EYA--ALAS--------------LADVM- 1777
Query: 194 SV-TLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAII 252
S+ +LV++ V+ R T + A +D +I + +A + + ++
Sbjct: 1778 SIESLVEV---VFYRGMT--MQVAVPRDELGRSNYGMIAINPGRVAASFSQ--EALQYVV 1830
Query: 253 LALYTIRTWSMTVLE--NVNS----LV--GRSAAPEYLQKLTYLCWNHHKSIRHIDTVRA 304
+ W ++E N N V G A L +T + N K ++ ID +
Sbjct: 1831 ERVGKRTGW---LVEIVNYNVENQQYVAAGDLRA---LDTVTNVL-NFIK-LQKIDIIE- 1881
Query: 305 YTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL 339
L S+ L+E ++ L
Sbjct: 1882 --------------LQKSLSLEE-------VEGHL 1895
Score = 35.4 bits (81), Expect = 0.030
Identities = 46/295 (15%), Positives = 80/295 (27%), Gaps = 91/295 (30%)
Query: 73 RSETLA---IRIS-NVANMVLFAAKVYASVKSGSLAIIASTLD---------SLLDLLSG 119
R TL+ + V F A ++ I+ + + +L+
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQ---LQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 120 FILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESL-RTLVSNED-- 176
F L + + ++ Q+ V L + L + D
Sbjct: 64 F-LGYVSSLVEPSKVGQF---------------DQV-----LNLCLTEFENCYLEGNDIH 102
Query: 177 --QFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA--FTNEIVKAYAQDHFFD-VITNIIG 231
L +E + ++ K L+ Y A + F V
Sbjct: 103 ALAAKLLQENDT-------TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 232 LVAVL-----LANYIDDWMDPVGAIILA-LYT-----IRTWSMTVLENVNSLV--GRSAA 278
LVA+ +Y ++ L LY + E ++ L+ A
Sbjct: 156 LVAIFGGQGNTDDYFEE---------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 279 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPL----QEAH 329
+ Q L L W + S Y + + P S PL Q AH
Sbjct: 207 KVFTQGLNILEWLENPSNTP---------DKDYLLSI----PISCPLIGVIQLAH 248
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.19
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 14/42 (33%)
Query: 67 ERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIAS 108
E++ L + + + K+YA + +LAI A+
Sbjct: 18 EKQALKKLQA--------------SLKLYADDSAPALAIKAT 45
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 28.4 bits (63), Expect = 4.3
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 141 KKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKL 200
+ PL F + L + L L + +V + + + +
Sbjct: 3 ITKPFPLPTGYFGIPLGLAALSLAWFHLENLFPAARMVSDV----LGIVASAVWILFILM 58
Query: 201 LLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRT 260
F E V+A +I + +L+ + + W + +++ + TI
Sbjct: 59 YAYKLRYYF--EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVLIWIGTIGQ 116
Query: 261 WSMTVL 266
+ L
Sbjct: 117 LLFSTL 122
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A
2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A
1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Length = 375
Score = 28.2 bits (63), Expect = 4.6
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 162 QIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDH 221
Q +L LR+ + + + +E +Q + + + K +A
Sbjct: 246 QHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAA---------------QQEKDWADYL 290
Query: 222 FFDVITNIIGLVAVLLANYID 242
F D ++IGL +L Y++
Sbjct: 291 FRDG--SMIGLNKDILCQYVE 309
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG
BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Length = 196
Score = 27.8 bits (61), Expect = 5.0
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 28 GGPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMT 64
N Y+ +++ + F+ + L +PG +
Sbjct: 95 CQKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIPGSS 131
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 8.2
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 25 VLLGGPEDNVAEYYQQQVQMLEGFNEMDALAER 57
++GG +D E F M A +
Sbjct: 1128 CIVGGYDDFQEE-------GSFEFGNMKATSNT 1153
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family
fold, regulation of apoptosis, mitochondri
apoptosis-apoptosis regulator complex; 2.49A {Homo
sapiens}
Length = 189
Score = 26.9 bits (58), Expect = 8.5
Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 153 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQW----VVGIMLSVTLVKLLLVVYCRA 208
+ +G + + ++ E + V+ + S + +V +
Sbjct: 73 LETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLIS 132
Query: 209 FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWM 245
F + K + I + + +L DW+
Sbjct: 133 FGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWL 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,639,031
Number of extensions: 338468
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 16
Length of query: 367
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,049,298
Effective search space: 1101409056
Effective search space used: 1101409056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)