Query 017714
Match_columns 367
No_of_seqs 166 out of 1486
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:47:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02683 pyruvate dehydrogenas 100.0 8E-76 1.7E-80 572.9 39.0 346 19-365 8-354 (356)
2 CHL00144 odpB pyruvate dehydro 100.0 1.4E-75 3E-80 566.0 36.9 324 35-364 2-326 (327)
3 COG0022 AcoB Pyruvate/2-oxoglu 100.0 4.9E-75 1.1E-79 537.5 31.4 323 36-362 1-323 (324)
4 COG3958 Transketolase, C-termi 100.0 3.8E-74 8.3E-79 528.1 32.7 302 35-361 5-312 (312)
5 PRK09212 pyruvate dehydrogenas 100.0 1.4E-73 3.1E-78 552.6 38.4 325 35-364 2-326 (327)
6 PRK11892 pyruvate dehydrogenas 100.0 7.3E-73 1.6E-77 566.9 37.7 325 35-363 140-464 (464)
7 PTZ00182 3-methyl-2-oxobutanat 100.0 1.3E-71 2.8E-76 543.2 38.4 329 29-361 27-355 (355)
8 KOG0524 Pyruvate dehydrogenase 100.0 1.5E-67 3.1E-72 476.7 26.9 327 34-361 32-358 (359)
9 PLN02225 1-deoxy-D-xylulose-5- 100.0 2.8E-64 6.1E-69 519.7 37.2 309 35-363 379-692 (701)
10 COG1154 Dxs Deoxyxylulose-5-ph 100.0 2.3E-63 5E-68 494.9 34.3 307 34-363 313-624 (627)
11 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 1.2E-61 2.6E-66 504.1 37.1 303 36-361 309-616 (617)
12 PLN02582 1-deoxy-D-xylulose-5- 100.0 1.6E-60 3.4E-65 495.1 36.8 306 36-362 355-667 (677)
13 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.3E-59 2.8E-64 486.1 35.8 299 36-362 277-581 (581)
14 PRK12571 1-deoxy-D-xylulose-5- 100.0 2.4E-59 5.1E-64 488.3 36.5 307 36-363 318-629 (641)
15 PRK05444 1-deoxy-D-xylulose-5- 100.0 6.1E-58 1.3E-62 475.1 35.4 297 37-361 279-580 (580)
16 PLN02234 1-deoxy-D-xylulose-5- 100.0 5.6E-56 1.2E-60 457.5 32.6 274 36-327 356-632 (641)
17 KOG0525 Branched chain alpha-k 100.0 2.5E-54 5.3E-59 385.7 18.6 320 35-361 39-360 (362)
18 TIGR00232 tktlase_bact transke 100.0 2E-50 4.4E-55 422.4 30.2 299 28-361 340-653 (653)
19 PRK12753 transketolase; Review 100.0 1.1E-49 2.4E-54 416.7 31.9 294 33-361 351-663 (663)
20 PTZ00089 transketolase; Provis 100.0 4.2E-50 9.1E-55 420.5 27.2 299 29-364 347-661 (661)
21 PRK05899 transketolase; Review 100.0 3.7E-50 8E-55 420.3 25.1 292 35-361 317-624 (624)
22 PLN02790 transketolase 100.0 6.2E-49 1.3E-53 411.2 31.7 301 28-361 335-654 (654)
23 KOG0523 Transketolase [Carbohy 100.0 1.8E-49 3.9E-54 393.3 24.6 312 23-363 306-627 (632)
24 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.1E-46 2.5E-51 396.5 31.4 308 33-363 486-860 (889)
25 PRK09405 aceE pyruvate dehydro 100.0 3.1E-46 6.8E-51 393.3 33.3 307 34-363 492-863 (891)
26 PRK12754 transketolase; Review 100.0 9.5E-47 2.1E-51 392.7 28.8 292 35-361 353-663 (663)
27 PRK13012 2-oxoacid dehydrogena 100.0 6.2E-43 1.3E-47 369.8 31.0 300 33-363 499-868 (896)
28 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 5.6E-42 1.2E-46 301.3 17.6 166 41-207 1-167 (167)
29 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1E-36 2.3E-41 265.8 17.9 153 41-207 1-156 (156)
30 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3.2E-35 6.9E-40 311.7 30.5 293 35-337 584-910 (929)
31 PRK09404 sucA 2-oxoglutarate d 100.0 3.9E-35 8.4E-40 312.4 29.5 292 35-337 582-904 (924)
32 COG0021 TktA Transketolase [Ca 100.0 1.5E-34 3.4E-39 290.3 27.0 299 30-362 347-663 (663)
33 PF02779 Transket_pyr: Transke 100.0 2.4E-34 5.1E-39 256.2 14.2 166 35-211 1-176 (178)
34 smart00861 Transket_pyr Transk 100.0 3.7E-30 8E-35 227.0 16.3 155 38-207 1-166 (168)
35 PRK07119 2-ketoisovalerate fer 99.9 1.3E-22 2.8E-27 198.6 30.4 288 37-362 7-350 (352)
36 TIGR03336 IOR_alpha indolepyru 99.9 4.7E-23 1E-27 215.0 28.1 288 37-360 5-335 (595)
37 PF02780 Transketolase_C: Tran 99.9 7.6E-26 1.6E-30 189.8 3.5 123 230-352 1-124 (124)
38 PRK08659 2-oxoglutarate ferred 99.9 1.2E-21 2.7E-26 193.1 28.4 285 37-360 7-375 (376)
39 PRK09627 oorA 2-oxoglutarate-a 99.9 2.3E-21 5.1E-26 190.7 28.0 283 37-360 6-375 (375)
40 PRK09622 porA pyruvate flavodo 99.9 8.3E-20 1.8E-24 182.0 32.1 292 37-362 13-382 (407)
41 PRK08366 vorA 2-ketoisovalerat 99.9 6.8E-19 1.5E-23 174.0 30.0 255 37-313 6-337 (390)
42 PRK08367 porA pyruvate ferredo 99.8 2.9E-18 6.4E-23 169.9 30.0 259 37-315 7-341 (394)
43 PRK05261 putative phosphoketol 99.8 2.3E-18 4.9E-23 180.8 29.1 326 2-355 345-736 (785)
44 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 1.2E-18 2.6E-23 180.4 26.5 261 36-313 195-537 (562)
45 TIGR00759 aceE pyruvate dehydr 99.8 1.6E-16 3.4E-21 167.2 26.4 298 35-363 487-857 (885)
46 COG4231 Indolepyruvate ferredo 99.6 7.4E-14 1.6E-18 141.5 23.8 253 84-363 58-355 (640)
47 COG0674 PorA Pyruvate:ferredox 99.6 1.2E-12 2.6E-17 128.8 29.1 253 37-306 6-325 (365)
48 TIGR02176 pyruv_ox_red pyruvat 99.6 9.5E-13 2.1E-17 145.9 30.4 261 37-315 4-346 (1165)
49 COG2609 AceE Pyruvate dehydrog 99.6 2.9E-13 6.2E-18 137.5 22.8 302 31-363 486-859 (887)
50 PRK13030 2-oxoacid ferredoxin 99.3 1.2E-10 2.6E-15 127.8 22.6 302 36-362 19-395 (1159)
51 PRK09193 indolepyruvate ferred 99.3 4.6E-10 1E-14 123.0 25.8 295 36-362 27-403 (1165)
52 PRK13029 2-oxoacid ferredoxin 99.3 5.5E-10 1.2E-14 122.2 22.8 303 36-362 30-417 (1186)
53 cd06586 TPP_enzyme_PYR Pyrimid 99.2 1.2E-10 2.5E-15 100.5 13.0 118 79-206 31-153 (154)
54 PRK12270 kgd alpha-ketoglutara 99.2 4.7E-09 1E-13 111.2 22.4 286 35-337 885-1207(1228)
55 COG3957 Phosphoketolase [Carbo 99.1 1.7E-09 3.7E-14 110.8 17.2 264 1-273 355-661 (793)
56 KOG0451 Predicted 2-oxoglutara 98.9 1.3E-08 2.9E-13 101.5 12.7 290 34-337 561-893 (913)
57 KOG0450 2-oxoglutarate dehydro 98.8 2.2E-07 4.9E-12 95.0 16.0 286 37-333 649-988 (1017)
58 PF01855 POR_N: Pyruvate flavo 98.7 7.5E-08 1.6E-12 89.1 9.4 111 86-208 38-155 (230)
59 COG0567 SucA 2-oxoglutarate de 98.5 1.4E-06 3E-11 92.6 12.4 287 36-336 565-884 (906)
60 cd07034 TPP_PYR_PFOR_IOR-alpha 97.6 0.0044 9.5E-08 53.7 16.2 109 83-205 41-158 (160)
61 PF03894 XFP: D-xylulose 5-pho 97.5 0.011 2.5E-07 51.9 16.6 151 41-196 2-178 (179)
62 cd07035 TPP_PYR_POX_like Pyrim 97.4 0.0017 3.7E-08 55.9 10.9 111 84-205 35-153 (155)
63 PF02776 TPP_enzyme_N: Thiamin 96.8 0.02 4.3E-07 50.4 11.8 155 37-210 1-164 (172)
64 TIGR03297 Ppyr-DeCO2ase phosph 96.5 0.022 4.8E-07 56.3 10.6 122 80-210 23-155 (361)
65 PRK07092 benzoylformate decarb 96.3 0.21 4.5E-06 52.0 17.1 149 37-209 12-172 (530)
66 TIGR03845 sulfopyru_alph sulfo 96.2 0.044 9.5E-07 47.8 9.5 120 76-207 26-154 (157)
67 PRK07586 hypothetical protein; 96.1 0.28 6.1E-06 50.7 16.8 201 85-298 41-271 (514)
68 PRK08199 thiamine pyrophosphat 96.0 0.76 1.7E-05 48.1 19.8 114 85-210 48-170 (557)
69 PRK12474 hypothetical protein; 95.9 1.2 2.6E-05 46.1 20.7 151 35-209 3-166 (518)
70 PRK08611 pyruvate oxidase; Pro 95.9 0.41 8.8E-06 50.4 17.1 155 36-209 3-165 (576)
71 TIGR03457 sulphoacet_xsc sulfo 95.8 0.33 7.2E-06 51.0 16.0 113 85-210 41-162 (579)
72 PRK08322 acetolactate synthase 95.7 0.16 3.5E-06 52.9 13.3 115 84-210 39-162 (547)
73 cd07039 TPP_PYR_POX Pyrimidine 95.7 0.17 3.7E-06 44.2 11.3 111 85-207 40-158 (164)
74 PRK07524 hypothetical protein; 95.3 0.32 6.9E-06 50.6 13.7 113 85-209 41-165 (535)
75 cd02001 TPP_ComE_PpyrDC Thiami 95.2 0.43 9.4E-06 41.4 12.1 143 41-204 2-151 (157)
76 PRK07064 hypothetical protein; 95.1 1.9 4.1E-05 44.9 18.9 112 85-209 43-167 (544)
77 PRK08978 acetolactate synthase 95.1 0.66 1.4E-05 48.4 15.3 111 85-209 40-161 (548)
78 TIGR02418 acolac_catab acetola 95.1 0.42 9.1E-06 49.8 13.6 113 85-209 38-159 (539)
79 PRK09124 pyruvate dehydrogenas 95.0 0.92 2E-05 47.7 16.0 113 85-209 43-163 (574)
80 cd07037 TPP_PYR_MenD Pyrimidin 95.0 0.22 4.8E-06 43.6 9.6 110 84-205 36-160 (162)
81 PRK07525 sulfoacetaldehyde ace 94.9 0.3 6.5E-06 51.5 12.3 114 84-210 44-166 (588)
82 TIGR02720 pyruv_oxi_spxB pyruv 94.9 0.56 1.2E-05 49.3 14.0 114 84-209 39-160 (575)
83 PRK09107 acetolactate synthase 94.8 0.41 8.9E-06 50.6 13.0 113 84-209 50-172 (595)
84 PRK06466 acetolactate synthase 94.7 0.52 1.1E-05 49.5 13.2 114 84-209 43-165 (574)
85 PRK08617 acetolactate synthase 94.6 2.3 4.9E-05 44.4 17.7 152 36-209 4-165 (552)
86 PRK07710 acetolactate synthase 94.6 1 2.3E-05 47.2 15.3 153 35-208 14-175 (571)
87 PRK07979 acetolactate synthase 94.6 0.81 1.8E-05 48.1 14.4 113 85-209 44-165 (574)
88 PRK06457 pyruvate dehydrogenas 94.4 0.82 1.8E-05 47.8 13.8 115 84-210 40-162 (549)
89 TIGR00118 acolac_lg acetolacta 94.2 0.41 8.8E-06 50.1 11.0 112 85-209 41-162 (558)
90 TIGR02177 PorB_KorB 2-oxoacid: 94.1 0.73 1.6E-05 44.2 11.7 142 39-204 12-182 (287)
91 cd07038 TPP_PYR_PDC_IPDC_like 94.1 0.99 2.2E-05 39.3 11.8 110 84-206 36-161 (162)
92 COG4032 Predicted thiamine-pyr 94.1 0.12 2.7E-06 43.8 5.6 108 86-206 43-162 (172)
93 PRK06725 acetolactate synthase 94.0 0.43 9.3E-06 50.2 10.9 114 84-209 53-175 (570)
94 PRK06965 acetolactate synthase 94.0 1.3 2.9E-05 46.6 14.7 154 35-209 19-182 (587)
95 PRK07282 acetolactate synthase 93.9 0.89 1.9E-05 47.7 13.0 113 85-209 50-171 (566)
96 cd02004 TPP_BZL_OCoD_HPCL Thia 93.9 0.76 1.6E-05 40.2 10.6 111 83-204 38-168 (172)
97 PRK08527 acetolactate synthase 93.7 1.4 2.9E-05 46.3 14.0 111 85-208 43-163 (563)
98 PRK07418 acetolactate synthase 93.6 1.9 4.1E-05 45.7 14.9 112 85-209 62-183 (616)
99 PRK08155 acetolactate synthase 93.6 2 4.3E-05 45.0 14.9 113 84-208 52-173 (564)
100 PRK06456 acetolactate synthase 93.4 0.77 1.7E-05 48.2 11.6 113 85-209 45-166 (572)
101 PRK06882 acetolactate synthase 93.4 2.7 5.8E-05 44.1 15.5 112 85-208 44-164 (574)
102 PLN02470 acetolactate synthase 93.3 0.58 1.3E-05 49.3 10.4 113 84-208 52-173 (585)
103 COG0028 IlvB Thiamine pyrophos 93.3 4.3 9.4E-05 42.5 16.6 114 84-209 40-162 (550)
104 cd02009 TPP_SHCHC_synthase Thi 93.2 0.96 2.1E-05 39.8 10.1 112 81-203 39-170 (175)
105 PRK08979 acetolactate synthase 93.0 2.7 5.8E-05 44.2 14.9 113 85-209 44-165 (572)
106 PRK08266 hypothetical protein; 92.9 3.6 7.8E-05 42.8 15.6 154 37-209 4-169 (542)
107 cd02010 TPP_ALS Thiamine pyrop 92.9 1.8 3.9E-05 38.2 11.5 112 83-204 38-166 (177)
108 PRK05858 hypothetical protein; 92.8 1.1 2.4E-05 46.7 11.6 152 36-209 4-165 (542)
109 PRK06048 acetolactate synthase 92.8 1 2.3E-05 47.1 11.5 113 84-208 46-167 (561)
110 TIGR03254 oxalate_oxc oxalyl-C 92.4 1.5 3.3E-05 45.8 12.0 112 85-209 42-165 (554)
111 PRK07789 acetolactate synthase 92.1 1.3 2.8E-05 47.0 11.2 113 85-209 71-192 (612)
112 PRK08327 acetolactate synthase 91.9 4 8.8E-05 42.8 14.4 113 85-209 52-182 (569)
113 PRK11269 glyoxylate carboligas 91.9 5.2 0.00011 42.2 15.3 111 85-209 44-166 (591)
114 cd03376 TPP_PFOR_porB_like Thi 91.8 6.2 0.00013 36.6 14.1 37 168-204 158-196 (235)
115 PRK06276 acetolactate synthase 91.8 1.4 3E-05 46.5 10.9 112 85-209 40-161 (586)
116 PRK11866 2-oxoacid ferredoxin 91.6 2.8 6.1E-05 40.0 11.7 146 39-204 18-188 (279)
117 CHL00099 ilvB acetohydroxyacid 91.6 1.9 4E-05 45.5 11.6 113 85-209 53-174 (585)
118 TIGR03846 sulfopy_beta sulfopy 91.3 4.4 9.5E-05 36.0 12.0 142 40-204 1-152 (181)
119 cd00568 TPP_enzymes Thiamine p 91.3 1.4 3E-05 37.9 8.6 112 83-204 36-165 (168)
120 PRK06112 acetolactate synthase 91.3 2 4.4E-05 45.1 11.4 114 84-210 50-173 (578)
121 PRK09259 putative oxalyl-CoA d 91.0 2.4 5.1E-05 44.5 11.6 115 84-210 48-173 (569)
122 PRK06546 pyruvate dehydrogenas 90.8 2.2 4.7E-05 45.0 11.2 113 85-209 43-163 (578)
123 cd02013 TPP_Xsc_like Thiamine 90.7 3.1 6.6E-05 37.3 10.6 111 83-204 43-175 (196)
124 cd02014 TPP_POX Thiamine pyrop 90.7 4 8.6E-05 35.9 11.2 111 83-204 41-169 (178)
125 PRK09628 oorB 2-oxoglutarate-a 90.4 4.4 9.6E-05 38.6 11.8 142 41-204 29-197 (277)
126 cd03375 TPP_OGFOR Thiamine pyr 90.2 9 0.0002 34.3 13.2 26 179-204 155-180 (193)
127 cd02003 TPP_IolD Thiamine pyro 90.2 4 8.6E-05 36.9 10.9 36 168-204 145-180 (205)
128 PRK08273 thiamine pyrophosphat 90.1 4.7 0.0001 42.6 13.0 114 84-209 43-165 (597)
129 cd02015 TPP_AHAS Thiamine pyro 90.0 4.4 9.4E-05 35.9 10.9 111 83-204 40-170 (186)
130 TIGR01504 glyox_carbo_lig glyo 89.9 3.3 7.3E-05 43.7 11.6 111 85-209 43-165 (588)
131 cd02018 TPP_PFOR Thiamine pyro 89.6 10 0.00022 35.2 13.3 37 168-204 160-199 (237)
132 PLN02573 pyruvate decarboxylas 89.3 9.9 0.00022 40.1 14.6 151 35-209 14-183 (578)
133 cd02002 TPP_BFDC Thiamine pyro 88.8 5.2 0.00011 34.9 10.4 111 83-204 40-175 (178)
134 PF09363 XFP_C: XFP C-terminal 88.3 2.5 5.5E-05 38.2 8.0 88 239-334 35-135 (203)
135 PRK11867 2-oxoglutarate ferred 88.2 9 0.00019 36.7 12.2 143 39-204 28-198 (286)
136 PRK07449 2-succinyl-5-enolpyru 87.9 2.7 5.9E-05 44.0 9.3 113 85-208 49-174 (568)
137 PRK11864 2-ketoisovalerate fer 87.9 3.8 8.3E-05 39.5 9.4 34 171-204 170-203 (300)
138 TIGR00173 menD 2-succinyl-5-en 87.4 3.7 8E-05 41.5 9.6 114 85-209 40-167 (432)
139 TIGR03394 indol_phenyl_DC indo 87.1 11 0.00023 39.4 13.0 114 85-210 40-167 (535)
140 TIGR03393 indolpyr_decarb indo 86.7 5.8 0.00013 41.3 10.9 114 85-211 41-169 (539)
141 PRK08155 acetolactate synthase 86.6 6.7 0.00015 41.1 11.3 111 83-204 409-539 (564)
142 PF02775 TPP_enzyme_C: Thiamin 86.1 4.9 0.00011 34.2 8.4 109 83-203 18-151 (153)
143 cd02008 TPP_IOR_alpha Thiamine 85.9 5.9 0.00013 34.8 9.0 37 168-204 135-173 (178)
144 PRK06163 hypothetical protein; 85.9 11 0.00023 34.2 10.8 148 39-204 14-169 (202)
145 cd03372 TPP_ComE Thiamine pyro 85.7 20 0.00042 31.7 12.3 108 83-204 35-151 (179)
146 PRK11865 pyruvate ferredoxin o 85.4 11 0.00023 36.5 11.0 34 171-204 174-207 (299)
147 PRK06154 hypothetical protein; 84.4 12 0.00026 39.3 11.9 149 35-209 18-177 (565)
148 cd03371 TPP_PpyrDC Thiamine py 84.2 26 0.00056 31.2 12.4 110 83-204 41-159 (188)
149 PRK08617 acetolactate synthase 83.7 8.5 0.00018 40.2 10.4 111 81-204 402-532 (552)
150 PRK11869 2-oxoacid ferredoxin 83.1 7.3 0.00016 37.2 8.8 146 38-204 18-189 (280)
151 cd02012 TPP_TK Thiamine pyroph 81.8 13 0.00027 34.8 9.9 98 95-205 109-224 (255)
152 cd02006 TPP_Gcl Thiamine pyrop 81.8 7.1 0.00015 35.1 7.9 112 83-204 47-190 (202)
153 COG1071 AcoA Pyruvate/2-oxoglu 81.5 5.8 0.00013 39.2 7.6 104 92-205 141-258 (358)
154 cd02007 TPP_DXS Thiamine pyrop 81.3 13 0.00029 33.3 9.5 97 94-204 78-186 (195)
155 cd03028 GRX_PICOT_like Glutare 80.2 4.6 0.0001 31.3 5.3 66 238-308 7-80 (90)
156 TIGR03297 Ppyr-DeCO2ase phosph 80.2 65 0.0014 31.9 15.7 110 83-204 214-332 (361)
157 cd03027 GRX_DEP Glutaredoxin ( 79.9 4.7 0.0001 29.7 5.1 65 240-307 2-67 (73)
158 PRK05858 hypothetical protein; 78.9 13 0.00028 38.7 9.8 112 83-204 397-526 (542)
159 cd01481 vWA_collagen_alpha3-VI 78.5 6.6 0.00014 34.1 6.3 55 241-298 110-164 (165)
160 TIGR03254 oxalate_oxc oxalyl-C 78.4 25 0.00054 36.7 11.8 148 43-204 371-534 (554)
161 PRK06457 pyruvate dehydrogenas 77.2 34 0.00075 35.7 12.4 112 83-204 386-515 (549)
162 COG1393 ArsC Arsenate reductas 76.8 8.9 0.00019 31.6 6.3 49 241-291 3-51 (117)
163 TIGR03336 IOR_alpha indolepyru 76.8 24 0.00051 37.4 11.1 113 83-205 395-527 (595)
164 COG0028 IlvB Thiamine pyrophos 76.5 28 0.00061 36.6 11.4 112 82-204 397-527 (550)
165 TIGR00365 monothiol glutaredox 76.3 6.5 0.00014 31.1 5.2 71 237-309 10-85 (97)
166 PRK06048 acetolactate synthase 76.2 27 0.00059 36.5 11.3 111 83-204 404-534 (561)
167 cd00860 ThrRS_anticodon ThrRS 76.1 15 0.00033 27.7 7.2 58 240-300 3-62 (91)
168 cd03033 ArsC_15kD Arsenate Red 75.8 8 0.00017 31.6 5.7 50 240-291 1-50 (113)
169 COG0075 Serine-pyruvate aminot 74.5 13 0.00028 37.1 7.8 81 233-316 75-160 (383)
170 PRK06965 acetolactate synthase 73.7 38 0.00081 35.8 11.6 112 83-204 427-558 (587)
171 PLN02980 2-oxoglutarate decarb 73.7 14 0.0003 44.0 9.1 111 84-206 340-465 (1655)
172 TIGR01616 nitro_assoc nitrogen 73.6 8.9 0.00019 32.0 5.6 45 245-290 5-50 (126)
173 PRK05444 1-deoxy-D-xylulose-5- 73.5 21 0.00045 37.7 9.6 99 95-205 121-239 (580)
174 TIGR00118 acolac_lg acetolacta 73.3 31 0.00068 36.0 10.9 111 83-204 402-532 (558)
175 PRK08978 acetolactate synthase 73.1 42 0.00092 34.9 11.8 111 83-204 391-521 (548)
176 TIGR02418 acolac_catab acetola 72.7 32 0.00069 35.8 10.7 111 83-204 398-526 (539)
177 TIGR02190 GlrX-dom Glutaredoxi 72.5 19 0.00041 26.9 6.8 73 236-313 5-78 (79)
178 PRK05778 2-oxoglutarate ferred 72.0 23 0.0005 34.2 8.7 98 96-204 75-199 (301)
179 cd01080 NAD_bind_m-THF_DH_Cycl 71.3 12 0.00026 32.9 6.1 53 237-297 43-95 (168)
180 PRK08527 acetolactate synthase 70.9 31 0.00068 36.1 10.2 111 83-204 404-534 (563)
181 PF03960 ArsC: ArsC family; I 70.8 5.8 0.00013 32.0 3.7 42 249-291 5-46 (110)
182 PRK10853 putative reductase; P 70.6 10 0.00022 31.3 5.2 43 248-291 8-50 (118)
183 PRK06276 acetolactate synthase 70.1 35 0.00077 35.9 10.4 111 83-204 409-539 (586)
184 PRK06882 acetolactate synthase 70.0 51 0.0011 34.5 11.6 111 83-204 411-542 (574)
185 COG3961 Pyruvate decarboxylase 70.0 26 0.00056 36.3 8.8 114 83-208 42-170 (557)
186 PRK07092 benzoylformate decarb 69.8 47 0.001 34.5 11.2 112 83-204 398-526 (530)
187 cd03035 ArsC_Yffb Arsenate Red 69.8 11 0.00025 30.2 5.2 43 248-291 7-49 (105)
188 PRK05899 transketolase; Review 69.7 28 0.0006 37.1 9.6 38 167-205 206-245 (624)
189 PRK09259 putative oxalyl-CoA d 69.6 51 0.0011 34.5 11.5 147 43-204 378-542 (569)
190 PRK06466 acetolactate synthase 69.4 66 0.0014 33.7 12.3 112 83-204 413-544 (574)
191 PRK08273 thiamine pyrophosphat 68.9 57 0.0012 34.5 11.7 36 168-204 507-542 (597)
192 PRK10026 arsenate reductase; P 68.5 15 0.00033 31.4 5.9 43 248-291 10-52 (141)
193 cd00858 GlyRS_anticodon GlyRS 68.5 24 0.00053 28.8 7.1 59 238-300 26-88 (121)
194 cd03029 GRX_hybridPRX5 Glutare 68.1 27 0.00058 25.4 6.6 69 240-313 2-71 (72)
195 KOG1184 Thiamine pyrophosphate 67.9 21 0.00045 36.8 7.6 148 43-208 6-170 (561)
196 PRK06154 hypothetical protein; 67.7 77 0.0017 33.3 12.3 112 83-204 421-551 (565)
197 PRK12315 1-deoxy-D-xylulose-5- 67.3 46 0.00099 35.2 10.5 109 86-205 109-240 (581)
198 PRK06546 pyruvate dehydrogenas 67.2 45 0.00098 35.1 10.5 109 83-204 398-526 (578)
199 PLN02470 acetolactate synthase 67.0 68 0.0015 33.8 11.8 112 83-204 416-553 (585)
200 PRK06456 acetolactate synthase 66.7 63 0.0014 33.9 11.4 111 83-204 411-541 (572)
201 PRK08322 acetolactate synthase 66.4 60 0.0013 33.7 11.2 111 83-204 396-524 (547)
202 PRK09124 pyruvate dehydrogenas 66.1 64 0.0014 33.8 11.4 112 83-204 398-526 (574)
203 PRK06112 acetolactate synthase 66.0 54 0.0012 34.4 10.8 109 85-204 429-556 (578)
204 PF03358 FMN_red: NADPH-depend 65.8 14 0.00031 31.0 5.4 66 247-313 14-93 (152)
205 PRK07710 acetolactate synthase 65.7 61 0.0013 34.0 11.1 111 83-204 414-544 (571)
206 smart00226 LMWPc Low molecular 65.4 15 0.00032 30.7 5.3 39 254-300 44-82 (140)
207 cd00859 HisRS_anticodon HisRS 65.0 27 0.00058 25.9 6.3 55 240-298 3-60 (91)
208 PRK08266 hypothetical protein; 64.7 42 0.00092 34.8 9.6 111 83-204 392-521 (542)
209 cd03034 ArsC_ArsC Arsenate Red 64.7 13 0.00029 30.1 4.7 43 248-291 7-49 (112)
210 COG0426 FpaA Uncharacterized f 64.4 15 0.00032 36.7 5.7 62 240-305 248-312 (388)
211 cd02005 TPP_PDC_IPDC Thiamine 64.4 84 0.0018 27.6 10.2 112 83-204 40-170 (183)
212 TIGR02189 GlrX-like_plant Glut 64.2 44 0.00096 26.4 7.6 66 238-307 7-77 (99)
213 TIGR00014 arsC arsenate reduct 63.9 14 0.0003 30.1 4.7 43 248-291 7-49 (114)
214 cd03418 GRX_GRXb_1_3_like Glut 63.4 17 0.00038 26.4 4.8 64 241-307 2-67 (75)
215 PRK07418 acetolactate synthase 62.9 39 0.00085 35.8 9.1 111 83-204 424-555 (616)
216 cd05564 PTS_IIB_chitobiose_lic 62.8 66 0.0014 25.2 8.3 79 254-358 17-95 (96)
217 TIGR01504 glyox_carbo_lig glyo 62.7 45 0.00097 35.2 9.4 112 83-204 408-551 (588)
218 PLN02790 transketolase 61.9 44 0.00096 35.9 9.3 73 122-205 153-235 (654)
219 PRK08199 thiamine pyrophosphat 61.5 60 0.0013 33.9 10.1 111 83-204 406-534 (557)
220 PRK12474 hypothetical protein; 61.4 62 0.0013 33.5 10.1 111 83-203 380-514 (518)
221 COG2089 SpsE Sialic acid synth 61.3 34 0.00073 33.4 7.3 65 236-301 145-216 (347)
222 PRK07449 2-succinyl-5-enolpyru 60.7 30 0.00066 36.2 7.7 98 96-204 430-545 (568)
223 TIGR03457 sulphoacet_xsc sulfo 60.4 59 0.0013 34.2 9.8 109 83-204 420-553 (579)
224 PRK07064 hypothetical protein; 59.9 46 0.001 34.6 8.9 112 83-204 396-524 (544)
225 PRK07586 hypothetical protein; 59.8 1.1E+02 0.0024 31.5 11.6 111 83-203 376-510 (514)
226 cd00861 ProRS_anticodon_short 59.7 46 0.001 25.3 6.9 58 240-300 3-65 (94)
227 KOG0225 Pyruvate dehydrogenase 59.5 52 0.0011 32.3 8.2 108 93-211 169-290 (394)
228 COG0655 WrbA Multimeric flavod 58.4 53 0.0011 29.5 8.0 69 246-315 13-100 (207)
229 PF03129 HGTP_anticodon: Antic 58.3 25 0.00055 26.9 5.2 57 240-299 1-62 (94)
230 COG0680 HyaD Ni,Fe-hydrogenase 57.9 30 0.00066 30.1 6.0 56 239-298 2-64 (160)
231 PF01565 FAD_binding_4: FAD bi 57.8 1E+02 0.0022 25.3 9.2 75 177-256 3-80 (139)
232 PRK07979 acetolactate synthase 57.6 1E+02 0.0023 32.3 11.1 111 83-204 411-544 (574)
233 PRK08611 pyruvate oxidase; Pro 57.2 93 0.002 32.7 10.7 112 83-204 398-526 (576)
234 cd00738 HGTP_anticodon HGTP an 57.0 47 0.001 25.0 6.4 57 240-299 3-64 (94)
235 TIGR02194 GlrX_NrdH Glutaredox 56.7 20 0.00043 26.2 4.1 57 248-306 7-64 (72)
236 PF07931 CPT: Chloramphenicol 56.4 80 0.0017 27.9 8.5 21 93-113 69-89 (174)
237 PRK03767 NAD(P)H:quinone oxido 56.4 85 0.0019 28.0 8.9 68 246-315 12-94 (200)
238 PRK08979 acetolactate synthase 56.0 1.2E+02 0.0027 31.7 11.4 111 83-204 411-542 (572)
239 cd03036 ArsC_like Arsenate Red 55.4 21 0.00045 28.9 4.3 43 248-291 7-49 (111)
240 cd06062 H2MP_MemB-H2up Endopep 55.2 47 0.001 28.1 6.7 54 241-298 1-61 (146)
241 KOG2862 Alanine-glyoxylate ami 55.0 67 0.0015 31.3 8.1 78 234-315 88-167 (385)
242 PRK13344 spxA transcriptional 54.8 34 0.00074 28.7 5.6 43 248-291 8-50 (132)
243 PRK11269 glyoxylate carboligas 54.4 1.3E+02 0.0028 31.7 11.2 111 83-204 409-552 (591)
244 PRK09107 acetolactate synthase 54.3 69 0.0015 33.8 9.2 112 83-204 420-550 (595)
245 cd02977 ArsC_family Arsenate R 54.0 35 0.00077 27.0 5.4 43 248-291 7-49 (105)
246 PRK10126 tyrosine phosphatase; 53.8 20 0.00043 30.5 4.1 39 255-300 48-86 (147)
247 cd00115 LMWPc Substituted upda 53.7 24 0.00053 29.5 4.7 40 254-300 48-87 (141)
248 TIGR02720 pyruv_oxi_spxB pyruv 53.5 2.1E+02 0.0046 30.0 12.6 111 83-204 398-528 (575)
249 cd06063 H2MP_Cyano-H2up This g 52.6 47 0.001 28.2 6.3 54 241-298 1-60 (146)
250 PRK06725 acetolactate synthase 52.5 69 0.0015 33.7 8.8 111 83-204 412-541 (570)
251 PRK07789 acetolactate synthase 52.3 1.2E+02 0.0027 32.0 10.7 112 83-204 437-572 (612)
252 PRK12559 transcriptional regul 52.1 46 0.001 27.8 6.0 42 248-290 8-49 (131)
253 cd03032 ArsC_Spx Arsenate Redu 52.0 37 0.00081 27.5 5.4 42 248-290 8-49 (115)
254 CHL00099 ilvB acetohydroxyacid 51.7 1.2E+02 0.0026 32.0 10.4 111 83-204 420-551 (585)
255 PTZ00089 transketolase; Provis 51.4 1.2E+02 0.0026 32.7 10.4 73 122-205 164-246 (661)
256 PF10740 DUF2529: Protein of u 51.4 52 0.0011 29.1 6.3 84 184-271 24-115 (172)
257 COG0695 GrxC Glutaredoxin and 51.2 44 0.00095 25.3 5.3 60 241-301 3-64 (80)
258 TIGR03569 NeuB_NnaB N-acetylne 51.0 75 0.0016 31.1 8.1 73 237-312 132-213 (329)
259 PRK07525 sulfoacetaldehyde ace 50.7 1.7E+02 0.0036 30.9 11.3 111 83-204 425-558 (588)
260 PRK10264 hydrogenase 1 maturat 50.6 51 0.0011 29.7 6.4 56 239-298 4-66 (195)
261 PF00676 E1_dh: Dehydrogenase 50.5 34 0.00074 32.9 5.6 99 97-205 107-222 (300)
262 KOG1185 Thiamine pyrophosphate 48.8 3.3E+02 0.0072 28.3 12.7 153 34-208 11-173 (571)
263 PF14097 SpoVAE: Stage V sporu 48.8 1.9E+02 0.0042 25.5 9.5 74 240-316 1-80 (180)
264 TIGR01617 arsC_related transcr 48.7 34 0.00073 27.8 4.6 44 247-291 6-49 (117)
265 PRK10638 glutaredoxin 3; Provi 48.6 55 0.0012 24.5 5.5 65 240-307 3-68 (83)
266 COG4231 Indolepyruvate ferredo 48.4 43 0.00094 35.5 6.2 103 94-205 431-551 (640)
267 PF04430 DUF498: Protein of un 47.8 12 0.00026 30.3 1.8 38 237-274 52-90 (110)
268 TIGR02690 resist_ArsH arsenica 47.3 1.1E+02 0.0023 28.2 8.1 62 251-313 44-113 (219)
269 PRK10466 hybD hydrogenase 2 ma 47.2 89 0.0019 27.1 7.3 56 240-299 2-64 (164)
270 PF03102 NeuB: NeuB family; I 47.1 90 0.002 29.1 7.7 71 241-313 115-192 (241)
271 cd06070 H2MP_like-2 Putative [ 46.6 61 0.0013 27.2 6.0 51 243-299 2-56 (140)
272 TIGR03181 PDH_E1_alph_x pyruva 46.3 71 0.0015 31.3 7.2 62 142-205 171-243 (341)
273 cd00518 H2MP Hydrogenase speci 46.2 67 0.0015 26.8 6.2 53 243-299 2-60 (139)
274 TIGR03393 indolpyr_decarb indo 45.5 1.9E+02 0.0042 30.0 10.7 149 37-204 356-523 (539)
275 PF00258 Flavodoxin_1: Flavodo 45.2 39 0.00084 28.0 4.6 48 246-298 7-54 (143)
276 PRK07524 hypothetical protein; 44.5 1.4E+02 0.003 31.0 9.5 111 83-204 396-525 (535)
277 cd00248 Mth938-like Mth938-lik 44.5 15 0.00033 29.7 1.9 35 239-273 53-88 (109)
278 PF07905 PucR: Purine cataboli 44.4 1E+02 0.0022 25.2 6.9 60 242-302 45-111 (123)
279 PRK10499 PTS system N,N'-diace 43.9 1.7E+02 0.0036 23.5 9.6 20 344-364 84-103 (106)
280 PRK08762 molybdopterin biosynt 42.9 1.5E+02 0.0033 29.2 9.1 73 238-317 57-158 (376)
281 PRK10824 glutaredoxin-4; Provi 42.8 36 0.00077 28.0 3.8 37 238-274 14-54 (115)
282 PRK11200 grxA glutaredoxin 1; 42.5 1.1E+02 0.0024 22.9 6.4 71 241-315 3-81 (85)
283 PRK10329 glutaredoxin-like pro 42.5 1.5E+02 0.0032 22.4 8.1 61 240-306 2-65 (81)
284 cd05569 PTS_IIB_fructose PTS_I 42.3 1.3E+02 0.0028 23.5 6.9 56 241-300 2-64 (96)
285 TIGR02181 GRX_bact Glutaredoxi 42.1 51 0.0011 24.2 4.4 60 247-308 6-66 (79)
286 COG2241 CobL Precorrin-6B meth 42.1 1.9E+02 0.004 26.5 8.7 84 239-333 95-181 (210)
287 PLN02409 serine--glyoxylate am 42.0 81 0.0018 31.3 7.1 50 236-288 82-131 (401)
288 cd05125 Mth938_2P1-like Mth938 42.0 19 0.00042 29.5 2.1 38 236-273 52-90 (114)
289 TIGR00072 hydrog_prot hydrogen 41.9 95 0.0021 26.2 6.5 52 243-298 2-60 (145)
290 cd01474 vWA_ATR ATR (Anthrax T 41.0 35 0.00076 29.8 3.8 43 253-298 123-165 (185)
291 cd03412 CbiK_N Anaerobic cobal 41.0 1.7E+02 0.0037 24.1 7.8 75 240-315 2-95 (127)
292 PRK06372 translation initiatio 40.8 2.7E+02 0.0058 26.2 9.8 83 241-335 111-198 (253)
293 cd05560 Xcc1710_like Xcc1710_l 40.2 22 0.00049 28.8 2.2 37 237-273 51-88 (109)
294 cd06068 H2MP_like-1 Putative [ 40.0 90 0.0019 26.3 6.1 53 243-298 2-60 (144)
295 cd01482 vWA_collagen_alphaI-XI 39.7 84 0.0018 26.7 6.0 55 241-298 107-163 (164)
296 cd05565 PTS_IIB_lactose PTS_II 39.0 2E+02 0.0043 22.9 8.7 94 240-359 2-99 (99)
297 PRK11544 hycI hydrogenase 3 ma 38.6 82 0.0018 27.1 5.7 57 240-298 2-63 (156)
298 cd05212 NAD_bind_m-THF_DH_Cycl 38.2 71 0.0015 27.1 5.1 54 237-298 27-80 (140)
299 PF03853 YjeF_N: YjeF-related 37.9 1.2E+02 0.0026 26.3 6.7 51 241-291 29-81 (169)
300 PLN02269 Pyruvate dehydrogenas 37.7 1.6E+02 0.0035 29.2 8.2 61 142-205 187-256 (362)
301 PRK11391 etp phosphotyrosine-p 37.6 62 0.0013 27.4 4.7 90 255-363 48-141 (144)
302 PF00289 CPSase_L_chain: Carba 37.4 1.2E+02 0.0026 24.5 6.1 32 239-273 3-34 (110)
303 PRK06756 flavodoxin; Provision 37.4 2.4E+02 0.0053 23.4 9.9 81 246-332 12-93 (148)
304 PRK10569 NAD(P)H-dependent FMN 37.1 1.4E+02 0.003 26.6 7.1 62 251-313 18-89 (191)
305 PRK01655 spxA transcriptional 36.9 76 0.0017 26.4 5.1 43 247-290 7-49 (131)
306 TIGR00142 hycI hydrogenase mat 36.8 82 0.0018 26.7 5.3 55 242-298 2-62 (146)
307 KOG4166 Thiamine pyrophosphate 36.3 54 0.0012 33.3 4.5 108 89-207 134-250 (675)
308 TIGR02853 spore_dpaA dipicolin 36.3 95 0.0021 29.6 6.2 56 237-295 150-215 (287)
309 TIGR00130 frhD coenzyme F420-r 36.1 81 0.0018 27.0 5.2 59 239-298 3-69 (153)
310 PRK06703 flavodoxin; Provision 35.6 1.1E+02 0.0025 25.6 6.1 64 243-313 5-72 (151)
311 PF00462 Glutaredoxin: Glutare 35.6 62 0.0013 22.5 3.7 28 248-275 7-34 (60)
312 CHL00149 odpA pyruvate dehydro 34.7 1.9E+02 0.0042 28.3 8.2 62 142-205 184-256 (341)
313 PRK12753 transketolase; Review 34.6 2.7E+02 0.006 30.0 10.0 62 142-205 173-243 (663)
314 PRK08327 acetolactate synthase 34.6 1.3E+02 0.0029 31.5 7.5 113 83-204 420-563 (569)
315 PRK08306 dipicolinate synthase 34.5 1.1E+02 0.0023 29.4 6.3 56 237-295 151-216 (296)
316 PRK07308 flavodoxin; Validated 34.5 1.9E+02 0.0042 24.0 7.3 81 246-333 12-93 (146)
317 PRK14175 bifunctional 5,10-met 34.3 1E+02 0.0022 29.5 6.0 51 237-295 157-207 (286)
318 cd02000 TPP_E1_PDC_ADC_BCADC T 33.8 1.8E+02 0.0039 27.6 7.8 62 142-205 153-225 (293)
319 cd01472 vWA_collagen von Wille 33.6 1.1E+02 0.0023 25.9 5.7 55 241-298 107-163 (164)
320 PTZ00062 glutaredoxin; Provisi 33.5 1.3E+02 0.0029 27.2 6.4 65 237-307 111-184 (204)
321 PRK09739 hypothetical protein; 33.4 1.5E+02 0.0033 26.2 6.8 63 250-313 20-102 (199)
322 PRK08535 translation initiatio 33.2 3.1E+02 0.0067 26.5 9.3 76 247-334 154-234 (310)
323 cd01452 VWA_26S_proteasome_sub 32.7 1.9E+02 0.0041 25.8 7.1 59 241-300 111-176 (187)
324 TIGR03586 PseI pseudaminic aci 32.4 2.7E+02 0.0057 27.3 8.7 70 241-312 136-212 (327)
325 PRK08105 flavodoxin; Provision 32.3 51 0.0011 28.1 3.3 59 243-308 5-67 (149)
326 TIGR03394 indol_phenyl_DC indo 32.2 3.2E+02 0.0069 28.4 9.9 142 43-203 361-516 (535)
327 COG0543 UbiB 2-polyprenylpheno 32.2 2.3E+02 0.005 26.3 8.0 71 229-300 97-172 (252)
328 COG2805 PilT Tfp pilus assembl 32.1 47 0.001 32.3 3.3 23 40-62 184-206 (353)
329 CHL00201 syh histidine-tRNA sy 31.7 1.4E+02 0.0031 30.2 6.9 57 239-299 326-385 (430)
330 cd01453 vWA_transcription_fact 31.7 1.3E+02 0.0027 26.5 5.9 42 253-298 125-167 (183)
331 PRK07282 acetolactate synthase 31.6 3.9E+02 0.0084 28.0 10.4 110 83-204 408-537 (566)
332 cd01475 vWA_Matrilin VWA_Matri 31.5 1.2E+02 0.0025 27.5 5.8 56 241-299 112-169 (224)
333 PRK09004 FMN-binding protein M 31.0 2E+02 0.0042 24.4 6.7 82 243-333 5-93 (146)
334 cd03799 GT1_amsK_like This is 30.8 4.4E+02 0.0095 24.5 11.5 80 273-363 239-327 (355)
335 PLN02573 pyruvate decarboxylas 30.8 4.4E+02 0.0096 27.7 10.7 113 83-204 418-548 (578)
336 cd03801 GT1_YqgM_like This fam 30.3 2.1E+02 0.0046 26.1 7.5 37 275-314 261-297 (374)
337 cd01079 NAD_bind_m-THF_DH NAD 30.3 1E+02 0.0022 28.0 4.9 57 237-295 61-132 (197)
338 TIGR03567 FMN_reduc_SsuE FMN r 30.2 2.3E+02 0.0049 24.5 7.2 63 250-313 16-88 (171)
339 PLN02980 2-oxoglutarate decarb 30.2 2.5E+02 0.0053 33.9 9.4 35 169-204 851-885 (1655)
340 cd00006 PTS_IIA_man PTS_IIA, P 29.8 3E+02 0.0065 22.2 9.4 113 240-360 2-119 (122)
341 COG1707 ACT domain-containing 29.6 4E+02 0.0087 23.6 8.5 89 238-332 83-178 (218)
342 COG0541 Ffh Signal recognition 29.4 3.7E+02 0.008 27.5 9.1 58 118-178 73-131 (451)
343 PRK10537 voltage-gated potassi 29.4 1.8E+02 0.0038 29.2 7.1 56 238-296 240-309 (393)
344 TIGR00232 tktlase_bact transke 29.3 3.1E+02 0.0068 29.4 9.4 62 142-205 169-239 (653)
345 PRK05568 flavodoxin; Provision 29.3 1.3E+02 0.0028 24.8 5.3 45 247-298 13-57 (142)
346 PRK11761 cysM cysteine synthas 29.2 3.9E+02 0.0085 25.4 9.2 73 173-263 61-134 (296)
347 PF02882 THF_DHG_CYH_C: Tetrah 29.1 74 0.0016 27.7 3.8 55 237-300 35-89 (160)
348 PF12500 TRSP: TRSP domain C t 29.1 94 0.002 27.0 4.4 33 237-269 56-88 (155)
349 PRK05569 flavodoxin; Provision 29.0 1.3E+02 0.0029 24.7 5.3 46 246-298 12-57 (141)
350 TIGR03249 KdgD 5-dehydro-4-deo 28.6 1.2E+02 0.0026 28.9 5.5 43 242-284 77-119 (296)
351 PRK13403 ketol-acid reductoiso 28.6 1.8E+02 0.004 28.5 6.7 55 237-295 15-77 (335)
352 PHA03050 glutaredoxin; Provisi 28.4 2.7E+02 0.0059 22.3 6.8 69 238-309 12-87 (108)
353 TIGR00442 hisS histidyl-tRNA s 28.3 1.6E+02 0.0035 29.2 6.6 57 239-298 323-381 (397)
354 COG3962 Acetolactate synthase 28.0 5E+02 0.011 27.0 9.7 101 89-207 61-188 (617)
355 cd03794 GT1_wbuB_like This fam 27.8 4.3E+02 0.0094 24.3 9.3 43 272-314 277-321 (394)
356 PF14258 DUF4350: Domain of un 27.5 1.7E+02 0.0037 21.0 5.1 37 255-300 9-45 (70)
357 PRK09590 celB cellobiose phosp 27.3 1.4E+02 0.0031 23.9 4.9 47 243-289 53-102 (104)
358 PF02441 Flavoprotein: Flavopr 27.1 72 0.0016 26.3 3.3 35 240-274 2-37 (129)
359 cd01521 RHOD_PspE2 Member of t 27.0 78 0.0017 25.0 3.4 35 236-270 62-96 (110)
360 TIGR00204 dxs 1-deoxy-D-xylulo 26.8 3.5E+02 0.0076 28.9 9.1 35 170-205 234-271 (617)
361 COG1504 Uncharacterized conser 26.6 81 0.0018 25.8 3.3 38 235-274 58-97 (121)
362 cd03416 CbiX_SirB_N Sirohydroc 26.4 3E+02 0.0066 21.2 7.2 74 241-314 2-83 (101)
363 PRK00037 hisS histidyl-tRNA sy 26.3 1.9E+02 0.0041 28.7 6.8 57 239-298 319-377 (412)
364 PF00456 Transketolase_N: Tran 26.2 1.8E+02 0.004 28.4 6.4 39 167-206 199-241 (332)
365 PRK08114 cystathionine beta-ly 26.1 1.6E+02 0.0035 29.5 6.2 35 259-298 121-155 (395)
366 TIGR02326 transamin_PhnW 2-ami 25.7 2.6E+02 0.0056 27.0 7.5 27 278-304 146-172 (363)
367 cd05126 Mth938 Mth938 domain. 25.6 34 0.00073 28.2 1.0 37 235-271 55-93 (117)
368 cd01465 vWA_subgroup VWA subgr 25.5 3.1E+02 0.0067 22.9 7.2 46 251-298 116-162 (170)
369 TIGR01755 flav_wrbA NAD(P)H:qu 25.4 3.6E+02 0.0079 23.9 7.8 67 246-315 11-93 (197)
370 PRK03092 ribose-phosphate pyro 25.4 5.8E+02 0.013 24.5 9.6 64 237-300 35-117 (304)
371 PRK04930 glutathione-regulated 25.4 2.8E+02 0.0061 24.6 6.9 57 253-310 22-81 (184)
372 PF11823 DUF3343: Protein of u 25.2 84 0.0018 23.2 3.0 53 249-316 10-62 (73)
373 PRK14194 bifunctional 5,10-met 25.2 1.3E+02 0.0029 29.0 5.1 53 237-297 158-210 (301)
374 TIGR01753 flav_short flavodoxi 25.2 3.1E+02 0.0067 22.1 6.9 48 244-298 3-54 (140)
375 PRK10310 PTS system galactitol 25.0 2.7E+02 0.0058 21.7 6.0 48 242-295 5-56 (94)
376 cd03798 GT1_wlbH_like This fam 25.0 5.3E+02 0.011 23.5 12.2 76 274-363 263-344 (377)
377 KOG1395 Tryptophan synthase be 24.7 3.6E+02 0.0079 26.9 7.9 88 43-131 127-219 (477)
378 PRK00170 azoreductase; Reviewe 24.5 3.3E+02 0.0072 23.8 7.4 62 251-313 20-109 (201)
379 PRK14012 cysteine desulfurase; 24.4 3.8E+02 0.0082 26.4 8.5 26 276-301 159-184 (404)
380 PRK00676 hemA glutamyl-tRNA re 24.4 1.7E+02 0.0037 28.8 5.7 56 237-295 173-232 (338)
381 TIGR03566 FMN_reduc_MsuE FMN r 24.3 3E+02 0.0064 23.7 6.8 62 251-313 17-91 (174)
382 PF01451 LMWPc: Low molecular 24.2 49 0.0011 27.4 1.7 55 239-300 29-87 (138)
383 COG1104 NifS Cysteine sulfinat 24.1 2E+02 0.0043 28.9 6.2 74 243-316 94-170 (386)
384 COG1908 FrhD Coenzyme F420-red 24.1 4.3E+02 0.0093 22.1 8.7 42 264-305 27-74 (132)
385 TIGR00511 ribulose_e2b2 ribose 24.0 4.9E+02 0.011 25.0 8.8 66 254-331 156-226 (301)
386 PRK03359 putative electron tra 24.0 4.5E+02 0.0098 24.7 8.4 10 239-248 55-64 (256)
387 COG0059 IlvC Ketol-acid reduct 24.0 1.5E+02 0.0032 28.9 5.1 55 237-296 17-81 (338)
388 COG0299 PurN Folate-dependent 23.9 1.4E+02 0.003 27.1 4.6 45 38-89 62-107 (200)
389 KOG0572 Glutamine phosphoribos 23.8 2.7E+02 0.006 27.9 6.9 62 290-355 356-425 (474)
390 COG1184 GCD2 Translation initi 23.8 4.4E+02 0.0094 25.5 8.2 82 242-335 148-234 (301)
391 PRK11183 D-lactate dehydrogena 23.8 3.2E+02 0.007 28.8 7.8 90 171-265 36-129 (564)
392 PRK14192 bifunctional 5,10-met 23.6 2.1E+02 0.0046 27.3 6.1 53 237-297 158-210 (283)
393 PF11821 DUF3341: Protein of u 23.5 95 0.0021 27.5 3.5 37 249-289 11-47 (173)
394 PRK09754 phenylpropionate diox 23.4 1.4E+02 0.0031 29.4 5.2 34 237-273 143-176 (396)
395 PRK11104 hemG protoporphyrinog 23.4 3.2E+02 0.007 23.8 6.9 60 247-315 12-71 (177)
396 PLN02463 lycopene beta cyclase 23.3 90 0.002 31.8 3.8 38 239-279 29-66 (447)
397 PLN02374 pyruvate dehydrogenas 23.3 2.2E+02 0.0048 29.0 6.5 60 142-204 250-321 (433)
398 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.3 1.6E+02 0.0034 23.6 4.6 81 240-331 1-82 (126)
399 PF00070 Pyr_redox: Pyridine n 23.1 1.3E+02 0.0027 22.2 3.7 47 241-290 2-53 (80)
400 COG1152 CdhA CO dehydrogenase/ 23.0 2.3E+02 0.005 30.1 6.5 69 43-113 518-596 (772)
401 PF07991 IlvN: Acetohydroxy ac 23.0 1E+02 0.0022 27.1 3.5 57 237-296 3-67 (165)
402 COG0034 PurF Glutamine phospho 22.9 2.6E+02 0.0056 28.7 6.8 91 238-332 283-387 (470)
403 TIGR00106 uncharacterized prot 22.8 2E+02 0.0043 22.8 4.9 49 240-288 4-56 (97)
404 COG0062 Uncharacterized conser 22.8 2.1E+02 0.0046 25.9 5.7 46 241-286 53-98 (203)
405 PRK08639 threonine dehydratase 22.7 5.9E+02 0.013 25.6 9.5 113 176-315 74-202 (420)
406 PF03033 Glyco_transf_28: Glyc 22.7 1.6E+02 0.0035 23.8 4.6 34 241-274 1-36 (139)
407 cd01473 vWA_CTRP CTRP for CS 22.6 2.9E+02 0.0063 24.4 6.6 45 241-288 112-160 (192)
408 PRK14191 bifunctional 5,10-met 22.6 2.4E+02 0.0051 27.1 6.2 53 237-297 156-208 (285)
409 PF01488 Shikimate_DH: Shikima 22.4 1.3E+02 0.0027 25.0 3.9 32 237-271 11-43 (135)
410 TIGR02006 IscS cysteine desulf 22.2 3.3E+02 0.0072 26.8 7.6 28 278-305 159-186 (402)
411 PRK12483 threonine dehydratase 22.2 5.2E+02 0.011 27.0 9.1 120 178-332 88-221 (521)
412 PLN02530 histidine-tRNA ligase 22.1 2.2E+02 0.0047 29.4 6.3 56 239-298 402-460 (487)
413 PRK13018 cell division protein 22.1 3.5E+02 0.0075 27.1 7.5 61 237-300 111-185 (378)
414 PRK15427 colanic acid biosynth 21.9 3.3E+02 0.0071 27.1 7.5 68 240-314 255-326 (406)
415 COG1171 IlvA Threonine dehydra 21.9 4.2E+02 0.0091 26.2 7.9 76 243-332 123-210 (347)
416 COG1040 ComFC Predicted amidop 21.7 78 0.0017 29.1 2.7 20 243-265 193-212 (225)
417 PF02662 FlpD: Methyl-viologen 21.6 4.6E+02 0.01 21.6 7.1 60 240-299 1-62 (124)
418 PRK07199 phosphoribosylpyropho 21.6 6.5E+02 0.014 24.1 9.2 64 237-300 48-128 (301)
419 COG4635 HemG Flavodoxin [Energ 21.6 1E+02 0.0022 27.1 3.2 61 247-315 12-72 (175)
420 cd05009 SIS_GlmS_GlmD_2 SIS (S 21.4 3.5E+02 0.0075 22.2 6.5 57 237-297 12-69 (153)
421 cd01480 vWA_collagen_alpha_1-V 21.4 2.1E+02 0.0046 24.9 5.4 54 241-297 113-170 (186)
422 PF00975 Thioesterase: Thioest 21.4 2.2E+02 0.0048 25.1 5.6 38 240-277 67-105 (229)
423 cd00862 ProRS_anticodon_zinc P 21.3 4E+02 0.0087 23.8 7.2 59 240-299 12-77 (202)
424 TIGR01316 gltA glutamate synth 21.3 1.3E+02 0.0027 30.6 4.4 34 237-273 132-165 (449)
425 PRK09722 allulose-6-phosphate 21.1 4.2E+02 0.0091 24.5 7.4 43 253-299 97-142 (229)
426 COG0026 PurK Phosphoribosylami 21.0 2.9E+02 0.0063 27.6 6.6 59 239-301 2-73 (375)
427 COG1165 MenD 2-succinyl-6-hydr 20.8 6.2E+02 0.013 26.7 9.1 128 49-193 17-151 (566)
428 PRK12770 putative glutamate sy 20.8 1.4E+02 0.0029 29.1 4.4 34 237-273 17-50 (352)
429 cd03415 CbiX_CbiC Archaeal sir 20.7 4.7E+02 0.01 21.6 6.9 76 240-315 2-84 (125)
430 cd06067 H2MP_MemB-H2evol Endop 20.6 3.5E+02 0.0076 22.4 6.3 52 243-298 2-60 (136)
431 PLN02275 transferase, transfer 20.6 7.1E+02 0.015 24.1 9.5 106 238-361 261-371 (371)
432 TIGR00596 rad1 DNA repair prot 20.6 4E+02 0.0087 29.6 8.2 68 121-196 644-725 (814)
433 PF02254 TrkA_N: TrkA-N domain 20.5 1.6E+02 0.0035 23.1 4.1 30 241-273 1-30 (116)
434 PRK04148 hypothetical protein; 20.4 1.7E+02 0.0036 24.8 4.2 32 238-273 17-48 (134)
435 PRK07200 aspartate/ornithine c 20.4 2.8E+02 0.0062 27.9 6.5 44 237-280 186-234 (395)
436 COG4274 Uncharacterized conser 20.2 3.7E+02 0.0081 21.6 5.8 47 239-289 56-102 (104)
437 PRK12444 threonyl-tRNA synthet 20.2 2.7E+02 0.0058 29.8 6.7 15 347-362 622-636 (639)
438 PRK02948 cysteine desulfurase; 20.1 3.9E+02 0.0085 25.9 7.5 26 278-303 155-180 (381)
No 1
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=8e-76 Score=572.95 Aligned_cols=346 Identities=86% Similarity=1.297 Sum_probs=316.6
Q ss_pred cccccc-ccccccccccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHH
Q 017714 19 RIRPVV-SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFT 97 (367)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~v 97 (367)
|.||.. +--+.|.+...++++|++|+++|.+++++||+++++++|++.++|+++.+++|.++|+|+||||+||+||||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~v 87 (356)
T PLN02683 8 RTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFT 87 (356)
T ss_pred CccccccccCcccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHH
Confidence 445544 4478888888889999999999999999999999999999988888887889999998999999999999999
Q ss_pred HHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcE
Q 017714 98 GIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLK 177 (367)
Q Consensus 98 g~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~ 177 (367)
|+|+|||++|+|||+++++++|++||||||+|++|+++||+||+.++||++++++|...|.|+||++.++++||++|||+
T Consensus 88 g~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl~ 167 (356)
T PLN02683 88 GIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLK 167 (356)
T ss_pred HHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCCCCE
Confidence 99999999999999999889999999999999999999999999999999999888777889999888889999999999
Q ss_pred EEeeCCHHHHHHHHHHhHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHH
Q 017714 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257 (367)
Q Consensus 178 V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa 257 (367)
|++|+|+.|++.+++++++.++|+|||+++.+++...|......++++.+++|+++++++|+|++||++|+|++.|++|+
T Consensus 168 V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa 247 (356)
T PLN02683 168 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAA 247 (356)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHH
Confidence 99999999999999999999999999988776665444322222335677899999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCC
Q 017714 258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 337 (367)
Q Consensus 258 ~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~ 337 (367)
++|+++||+++|||++||||||++.|.++++++++|||+|||+..||||++|++.+.+++|..++.|+.|+|++|.++|+
T Consensus 248 ~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~ 327 (356)
T PLN02683 248 EILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPY 327 (356)
T ss_pred HHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998765457799999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhcc
Q 017714 338 AANLERMAVPQVLCFLYDSSIDGCYKFL 365 (367)
Q Consensus 338 ~~~l~~~~~l~~~~I~~~~i~~~l~~~~ 365 (367)
+..|++++.+++++|+++ +++++.++.
T Consensus 328 ~~~le~~~~p~~~~i~~a-~~~~~~~~~ 354 (356)
T PLN02683 328 AANLERLALPQVEDIVRA-AKRACYRSV 354 (356)
T ss_pred cHHHHHhhCCCHHHHHHH-HHHHHHhhc
Confidence 999999998999999999 999998763
No 2
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.4e-75 Score=566.02 Aligned_cols=324 Identities=43% Similarity=0.735 Sum_probs=300.6
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeeEEe
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~-R~i~~GIaE~~~vg~AaGlA~~G~~p~~~ 113 (367)
+++++|++|+++|.+++++||+++++++|++..+|+++.+++|+++| |+ ||||+||+||+|+|+|+|||++|++||++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~ 80 (327)
T CHL00144 2 SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVE 80 (327)
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEE
Confidence 35789999999999999999999999999987778777789999999 88 99999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
++++||++||||||+|++|+++||+||+.++|++++.+++...++|+||||.++++|+++|||+|++|+|+.|++.++++
T Consensus 81 ~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 81 GMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred eehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655456899999988999999999999999999999999999
Q ss_pred hHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 194 a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
+++.++|+|||+++.+|+.+ +.++++++.+++||+.++++|+|++||++|.|+++|++|++.|+++||+++|||++
T Consensus 161 a~~~~~Pv~ire~~~l~~~~----~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 236 (327)
T CHL00144 161 AIRSNNPVIFFEHVLLYNLK----EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLI 236 (327)
T ss_pred HHhCCCcEEEEEcHHhcCCC----CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999999887643 23455667789999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017714 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFL 353 (367)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~ 353 (367)
||||||+++|.++++++++|||+|||+..||||++|++.+.+++|..++.|+.++|++|.|+|+...+++.++||+++|+
T Consensus 237 ~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~~gl~~~~I~ 316 (327)
T CHL00144 237 SLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEATVIQPAQII 316 (327)
T ss_pred cCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999987655678999999999999976667777899999999
Q ss_pred HHHHHHHhhhc
Q 017714 354 YDSSIDGCYKF 364 (367)
Q Consensus 354 ~~~i~~~l~~~ 364 (367)
++ +++++.++
T Consensus 317 ~~-i~~~l~~~ 326 (327)
T CHL00144 317 EA-VEQIITNK 326 (327)
T ss_pred HH-HHHHHhcc
Confidence 99 99999764
No 3
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.9e-75 Score=537.54 Aligned_cols=323 Identities=53% Similarity=0.834 Sum_probs=311.0
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 115 (367)
++++++|++++|.+.|++|++|+++++|++..+|+|++|++|.++||++|++|++|+|.+.+|+|.|+|+.|+||+++++
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH
Q 017714 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI 195 (367)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~ 195 (367)
+.+|+..|+|||.|++++.+|||||+.++|+|++++.|...+.|.+|||+.+++|.++||++|++|++|.|++.+|+.|+
T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI 160 (324)
T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI 160 (324)
T ss_pred ecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987766778999999999999999999999999999999999999
Q ss_pred cCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeec
Q 017714 196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275 (367)
Q Consensus 196 ~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i 275 (367)
++++||++++++.+|+.. ..++|+++|.+|+||+.+.|+|+|+|||+||.|++.+++|+++|+++||+++|||+|||
T Consensus 161 rd~dPViflE~k~lY~~~---~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl 237 (324)
T COG0022 161 RDPDPVIFLEHKRLYRSF---KGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL 237 (324)
T ss_pred cCCCCEEEEecHHHhccc---ccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 999999999999999831 24667889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHHHH
Q 017714 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYD 355 (367)
Q Consensus 276 ~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~~~ 355 (367)
+|+|.++|.++++||+++++|||....+|+|++|+..+.+++|..|++|+.|++.+|.+.|+...||+.+.++++.|.++
T Consensus 238 ~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~a 317 (324)
T COG0022 238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAA 317 (324)
T ss_pred CccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 017714 356 SSIDGCY 362 (367)
Q Consensus 356 ~i~~~l~ 362 (367)
+++++.
T Consensus 318 -v~~v~~ 323 (324)
T COG0022 318 -VKKVLE 323 (324)
T ss_pred -HHHHhh
Confidence 999875
No 4
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-74 Score=528.11 Aligned_cols=302 Identities=26% Similarity=0.375 Sum_probs=274.8
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 114 (367)
...++|++|+++|.++.++|+++|++++|++.|+.+ ..|.++| |+||+|+||+||+|+|+|+|||++|++||+++
T Consensus 5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~----~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~t 79 (312)
T COG3958 5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT----GYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVST 79 (312)
T ss_pred cchHHHHHHHHHHHHHHhcCCCEEEEecccccccch----hHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceeec
Confidence 456899999999999999999999999999877655 6799999 99999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCC-CCCCchhHH--HHHHhcCCCcEEEeeCCHHHHHHH
Q 017714 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAG-VGAQHSHCY--AAWYASVPGLKVLSPYSSEDARGL 190 (367)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g-~G~tH~~~~--~a~~~~iP~~~V~~P~d~~e~~~~ 190 (367)
|++|.+.|+||||||++|| .++||.+++.+ |.+.| +|+|| |++ .++||.+||++|++|+|+.+++.+
T Consensus 80 fa~F~s~Ra~EQir~~iay--------~~lnVKiv~t~~G~t~g~dG~sH-q~~EDiaimR~lpn~~V~~P~D~v~~~~i 150 (312)
T COG3958 80 FAAFLSRRAWEQIRNSIAY--------NNLNVKIVATHAGVTYGEDGSSH-QALEDIAIMRGLPNMTVIAPADAVETRAI 150 (312)
T ss_pred hHHHHHHHHHHHHHHHhhh--------ccCCeEEEEecCCcccCCCCccc-hhHHHHHHHhcCCCceEEccCcHHHHHHH
Confidence 9776666999999999998 58888888764 88888 99999 544 499999999999999999999999
Q ss_pred HHHhHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEE
Q 017714 191 LKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (367)
Q Consensus 191 ~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi 270 (367)
+.++.++++|+|+|..|. ++| ..++..+|.|++||++++|+|+|++||++|.|+++|++||+.|+++||++.||
T Consensus 151 ~~~~~~~~GP~Y~Rl~R~----~~p--~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi 224 (312)
T COG3958 151 LDQIADYKGPVYMRLGRG----KVP--VVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVI 224 (312)
T ss_pred HHHHHhcCCCEEEEecCC----CCC--ceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999997764 333 23334468999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCC
Q 017714 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQ 348 (367)
Q Consensus 271 ~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~ 348 (367)
|++||||+|++.+.+.++++++|||+|||+..||||+.|++.+++++ +.|++|+|++|.|...+ ..|.+++++|
T Consensus 225 ~m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~ 300 (312)
T COG3958 225 NMFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLD 300 (312)
T ss_pred ecCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999985 68999999999998765 4677788999
Q ss_pred HHHHHHHHHHHHh
Q 017714 349 VLCFLYDSSIDGC 361 (367)
Q Consensus 349 ~~~I~~~~i~~~l 361 (367)
+++|+++ +++++
T Consensus 301 ~~~I~~~-v~~~~ 312 (312)
T COG3958 301 PESIAAR-VLELL 312 (312)
T ss_pred HHHHHHH-HHhhC
Confidence 9999999 98764
No 5
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=1.4e-73 Score=552.58 Aligned_cols=325 Identities=66% Similarity=1.086 Sum_probs=301.2
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 114 (367)
.++++|++|+++|.+++++||+++++++|++.++|+|+++++|+++|||+||||+||+||||+|+|+|||++|+|||+++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~ 81 (327)
T PRK09212 2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF 81 (327)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe
Confidence 45789999999999999999999999999998889889889999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 017714 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (367)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a 194 (367)
++++|++||||||+|++|+++||++|+.++|+++++++|...++|+||||+++++||++|||+|++|+|+.|++.+++++
T Consensus 82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a 161 (327)
T PRK09212 82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTA 161 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 87799999999999999999999999999999999988777779999999889999999999999999999999999999
Q ss_pred HcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeee
Q 017714 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (367)
Q Consensus 195 ~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~ 274 (367)
++.++|+||++++.+|... +.++++++.+++||++++++|+|++||+||++++.|++|++.|+++|++++|||+++
T Consensus 162 ~~~~~Pv~i~~~~~~~~~~----~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~ 237 (327)
T PRK09212 162 IRDPNPVIFLENEILYGHS----HEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237 (327)
T ss_pred HhCCCcEEEEEchhhcCCC----CCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 9999999999987766521 234455677899999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHHH
Q 017714 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLY 354 (367)
Q Consensus 275 i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~~ 354 (367)
|||||++.|.++++++++|||+|||+..||||+++++.+.++++..++.++.+++.+|.|++++..++++..+++++|++
T Consensus 238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~~~le~~~l~~~~~I~~ 317 (327)
T PRK09212 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAANLEKLALPSEEDIIE 317 (327)
T ss_pred CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCchHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999999999999999999998765445679999999999999887777776569999999
Q ss_pred HHHHHHhhhc
Q 017714 355 DSSIDGCYKF 364 (367)
Q Consensus 355 ~~i~~~l~~~ 364 (367)
+ +++++.++
T Consensus 318 ~-i~~~~~~~ 326 (327)
T PRK09212 318 A-VKKVCYRS 326 (327)
T ss_pred H-HHHHHhhc
Confidence 9 99999775
No 6
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=7.3e-73 Score=566.94 Aligned_cols=325 Identities=68% Similarity=1.082 Sum_probs=302.6
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 114 (367)
.++++|++|+++|.+++++||+++++++|++.++|.++++.+|.++|+|+||||+||+||+|+|+|+|||++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 45689999999999999999999999999998899888889999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 017714 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (367)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a 194 (367)
++++|++||||||+|++|+++||+||++++||++++++|...+.|+||+++++++|+++|||+|++|+|+.|++.+++++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~a 299 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAA 299 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999998766668899999999999999999999999999999999999
Q ss_pred HcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeee
Q 017714 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (367)
Q Consensus 195 ~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~ 274 (367)
++.++|+||++++.+|++..++ +.. +++.+++||++++|+|+|++||++|.+++.|++|+++|+++||+++|||++|
T Consensus 300 i~~~~Pv~ile~~~ry~~~~~v-p~~--~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~t 376 (464)
T PRK11892 300 IRDPNPVIFLENEILYGQSFDV-PKL--DDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRT 376 (464)
T ss_pred hhCCCcEEEEechhhcCCCCCC-CCc--CCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9999999999988877754221 111 3577889999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHHH
Q 017714 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLY 354 (367)
Q Consensus 275 i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~~ 354 (367)
|||||+++|.++++++++|||+|||+..||||++|++.+.+++|..++.|+.|+|++|.|.|+...|+++..+|+++|++
T Consensus 377 lkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l~~~~~Iv~ 456 (464)
T PRK11892 377 IRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEVVE 456 (464)
T ss_pred CCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999887767889999999999999888888887679999999
Q ss_pred HHHHHHhhh
Q 017714 355 DSSIDGCYK 363 (367)
Q Consensus 355 ~~i~~~l~~ 363 (367)
+ +++++.+
T Consensus 457 a-v~~~~~~ 464 (464)
T PRK11892 457 A-VKAVCYR 464 (464)
T ss_pred H-HHHHhhC
Confidence 9 9988754
No 7
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-71 Score=543.18 Aligned_cols=329 Identities=56% Similarity=0.899 Sum_probs=301.6
Q ss_pred ccccccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCC
Q 017714 29 NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGL 108 (367)
Q Consensus 29 ~~~~~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~ 108 (367)
+-+....++++|++|+++|.+++++||+++++++|++.++++++.+++|+++|||+||||+||+||+|+|+|+|||++|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~ 106 (355)
T PTZ00182 27 ESKGATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGL 106 (355)
T ss_pred cccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCC
Confidence 33344467899999999999999999999999999987777777778999999999999999999999999999999999
Q ss_pred eeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHH
Q 017714 109 KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDAR 188 (367)
Q Consensus 109 ~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~ 188 (367)
+||+++++++|++||+|||+|++|+++||+||++++|+++++++|...++|+||+|.++++|+++|||+|++|+|+.|++
T Consensus 107 ~Pvv~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~ 186 (355)
T PTZ00182 107 RPIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAK 186 (355)
T ss_pred EEEEEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHH
Confidence 99999877899999999999999999999999999999999876655569999999999999999999999999999999
Q ss_pred HHHHHhHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceE
Q 017714 189 GLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAE 268 (367)
Q Consensus 189 ~~~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~ 268 (367)
.+++++++.++|+||++++.+++...+ .++++++.+++||++++++|+|++||+||++++.|++|++.|+++|++++
T Consensus 187 ~~l~~a~~~~~P~~i~~p~~l~r~~~~---~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~ 263 (355)
T PTZ00182 187 GLLKAAIRDPNPVVFFEPKLLYRESVE---VVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCE 263 (355)
T ss_pred HHHHHHHhCCCcEEEEeehHHhCCCCC---CCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEE
Confidence 999999999999999999877764332 22334577889999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCC
Q 017714 269 VINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQ 348 (367)
Q Consensus 269 vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~ 348 (367)
|||++++||||++.|.++++++++|||+|||+..||||++|++.+.++++..++.|+.++|++|.|+|++..+++.+.++
T Consensus 264 vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~le~~~~~~ 343 (355)
T PTZ00182 264 VIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKNLEPAYLPD 343 (355)
T ss_pred EEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999876556789999999999999998899999999
Q ss_pred HHHHHHHHHHHHh
Q 017714 349 VLCFLYDSSIDGC 361 (367)
Q Consensus 349 ~~~I~~~~i~~~l 361 (367)
+++|+++ +++++
T Consensus 344 ~~~i~~~-~~~~~ 355 (355)
T PTZ00182 344 KEKVVEA-AKRVL 355 (355)
T ss_pred HHHHHHH-HHHhC
Confidence 9999999 98864
No 8
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-67 Score=476.75 Aligned_cols=327 Identities=69% Similarity=1.099 Sum_probs=315.7
Q ss_pred cccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 017714 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (367)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~ 113 (367)
..+++.|+|++++|.+.+++||+|+++++|++-++|+|+++++|.++||+.|++|++|+|....|+|.|+|++|+||+++
T Consensus 32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e 111 (359)
T KOG0524|consen 32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE 111 (359)
T ss_pred ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
.+...|++.++|||.|++++.+|||||++++|+||++|+|...|.|.+|||++.+|+.++||++|++|.+++|++.+++.
T Consensus 112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKa 191 (359)
T KOG0524|consen 112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKA 191 (359)
T ss_pred hhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHHHH
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 194 a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
|+++++||+++++..+|+..++.+++...++|..++||+++.|+|+|+||+++..++..+++|++.|.++|++++|||++
T Consensus 192 AIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlr 271 (359)
T KOG0524|consen 192 AIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVINLR 271 (359)
T ss_pred hccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEeee
Confidence 99999999999999999988877666556789999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017714 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFL 353 (367)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~ 353 (367)
+|+|||.++|.++++||.++++||+....+|+|++|+..+.|+.|+.|++|+.|+...|.+.||+..||+...+++++|+
T Consensus 272 SirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~~lE~~a~p~~~~iV 351 (359)
T KOG0524|consen 272 SIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAKTLEDWAVPQPADIV 351 (359)
T ss_pred ccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccchhhHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 017714 354 YDSSIDGC 361 (367)
Q Consensus 354 ~~~i~~~l 361 (367)
.+ +++++
T Consensus 352 ~A-vk~~~ 358 (359)
T KOG0524|consen 352 TA-VKKLC 358 (359)
T ss_pred HH-HHHhh
Confidence 99 99876
No 9
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.8e-64 Score=519.66 Aligned_cols=309 Identities=18% Similarity=0.244 Sum_probs=269.6
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 114 (367)
..++|+++|+++|.+++++||+|+++++|+.. |+ + +.+|+++| |+||||+||||||||++|+|||++|++||+++
T Consensus 379 ~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~--gt-g-l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~i 453 (701)
T PLN02225 379 DRRTYSDCFVEALVMEAEKDRDIVVVHAGMEM--DA-S-LITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCII 453 (701)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCccC--cc-c-HHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999999999999999998854 33 2 37899999 99999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCCchh-HHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 017714 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK 192 (367)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH~~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~ 192 (367)
| ++|++||||||+||+|+ +++||+++..+ |..+.+|+||++ .|.++||++|||+|++|+|++|++.+++
T Consensus 454 y-stFlqRAyDQI~~Dval--------~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~ 524 (701)
T PLN02225 454 P-SAFLQRAYDQVVHDVDR--------QRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVA 524 (701)
T ss_pred e-hhHHHHHHHHHHHHHHh--------hcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 7 78999999999999997 67888888764 555459999976 4559999999999999999999999999
Q ss_pred HhHc-CCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEE
Q 017714 193 AAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (367)
Q Consensus 193 ~a~~-~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~ 271 (367)
+|+. .++|+|||++|..+.. . +...++++.+++||++++++|.|++||++|+|++.|++|+++|+++||+++|||
T Consensus 525 ~A~~~~~gPv~IR~pRg~~~~---~-~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVId 600 (701)
T PLN02225 525 TAAYVTDRPVCFRFPRGSIVN---M-NYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVAD 600 (701)
T ss_pred HHHhcCCCCEEEEecccccCC---C-CcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9885 5799999998863211 0 100122466889999999999999999999999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCCH
Q 017714 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQV 349 (367)
Q Consensus 272 ~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~~ 349 (367)
++|+||+|++.|.++++++++|||+|||+. ||||++|++++.+++......+++++|++|.|++++ +.+.+.++||+
T Consensus 601 lr~ikPLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLda 679 (701)
T PLN02225 601 ARFCKPLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTG 679 (701)
T ss_pred cCCCCCCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCH
Confidence 999999999999999999999999999997 999999999998874210135799999999999875 56777889999
Q ss_pred HHHHHHHHHHHhhh
Q 017714 350 LCFLYDSSIDGCYK 363 (367)
Q Consensus 350 ~~I~~~~i~~~l~~ 363 (367)
++|+++ |++++++
T Consensus 680 e~I~~~-i~~~l~~ 692 (701)
T PLN02225 680 HHIAAT-ALSLLGR 692 (701)
T ss_pred HHHHHH-HHHHHhh
Confidence 999999 9999853
No 10
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=2.3e-63 Score=494.94 Aligned_cols=307 Identities=22% Similarity=0.299 Sum_probs=276.7
Q ss_pred cccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 017714 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (367)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~ 113 (367)
....+|.++|+++|.+++++|+++|.+|+ +|..|+ ++ ..|.++| |+||||+||||||+|++|+|||.+|+|||++
T Consensus 313 ~~~~sys~vf~~~L~~~a~~d~~ivaITa--AM~~gt-GL-~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvva 387 (627)
T COG1154 313 PSAPSYTKVFGDTLCELAAKDEKIVAITA--AMPEGT-GL-VKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVA 387 (627)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEec--CCCCCC-Ch-HHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEE
Confidence 35678999999999999999999999998 888887 66 6899999 9999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCCchhH-HHHHHhcCCCcEEEeeCCHHHHHHHH
Q 017714 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHC-YAAWYASVPGLKVLSPYSSEDARGLL 191 (367)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH~~~-~~a~~~~iP~~~V~~P~d~~e~~~~~ 191 (367)
+| |+|+||||||+.||+|. +|+||+|+... |..+.+|+||+.. |.+++|+||||+|++|+|.+|++.++
T Consensus 388 IY-STFLQRAYDQliHDvai--------qnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml 458 (627)
T COG1154 388 IY-STFLQRAYDQLIHDVAI--------QNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML 458 (627)
T ss_pred Ee-cHHHHHHHHHHHHHHHh--------ccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHH
Confidence 96 99999999999999997 89999999864 7766799999764 55999999999999999999999999
Q ss_pred HHhHcCC-CcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEE
Q 017714 192 KAAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (367)
Q Consensus 192 ~~a~~~~-~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi 270 (367)
++++.++ +|+.||+||+.-.. .....+...+++||++++++|.|++|+++|.++..|++|+++|.++||+++||
T Consensus 459 ~ta~~~~~gP~AiRyPrg~~~~-----~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVv 533 (627)
T COG1154 459 YTALAQDDGPVAIRYPRGNGVG-----VILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVV 533 (627)
T ss_pred HHHHhcCCCCeEEEecCCCCCC-----CCcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEE
Confidence 9999986 79999988762110 01111134578999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCC
Q 017714 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQ 348 (367)
Q Consensus 271 ~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~ 348 (367)
|++++||+|++.|++++++++.+||+||+.+.||+|+.|++++.+.+ ...|++++|++|.|++++ +++.+..+||
T Consensus 534 d~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~---~~~~v~~lglpd~fi~hg~~~el~~~~gLd 610 (627)
T COG1154 534 DPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHG---ILVPVLNLGLPDEFIDHGSPEELLAELGLD 610 (627)
T ss_pred cCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcC---CCCceEEecCChHhhccCCHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999998875 357899999999999986 5677778999
Q ss_pred HHHHHHHHHHHHhhh
Q 017714 349 VLCFLYDSSIDGCYK 363 (367)
Q Consensus 349 ~~~I~~~~i~~~l~~ 363 (367)
++.|+++ |.+.++.
T Consensus 611 ~~~i~~~-i~~~l~~ 624 (627)
T COG1154 611 AEGIARR-ILEWLKA 624 (627)
T ss_pred HHHHHHH-HHHHHhh
Confidence 9999999 9998875
No 11
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=1.2e-61 Score=504.07 Aligned_cols=303 Identities=23% Similarity=0.340 Sum_probs=271.4
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 115 (367)
..+++++|+++|.+++++||+|+++++|+...++ +++|+++| |+||||+||+||+|+++|+|||++|++||+++|
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~ 383 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG----LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIY 383 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC----hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEec
Confidence 4689999999999999999999999998854433 37899999 999999999999999999999999999999995
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCCCCCCchhHHH-HHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G~tH~~~~~-a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
+.|++||||||++++|+ +++||+++++ +|...++|+||++..+ ++|+++|||+|++|+|+.|++.++++
T Consensus 384 -a~Fl~ra~dQi~~~~a~--------~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~ 454 (617)
T TIGR00204 384 -STFLQRAYDQVVHDVCI--------QKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT 454 (617)
T ss_pred -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence 78899999999999997 6899999987 4665458999977554 99999999999999999999999999
Q ss_pred hHcCC-CcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEe
Q 017714 194 AIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (367)
Q Consensus 194 a~~~~-~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~ 272 (367)
|++.+ +|+|||++|..+.. . ...++++.+++|+++++++|+|++||++|.|++.|++|+++|+++||+++|||+
T Consensus 455 a~~~~~~Pv~ir~~r~~~~~---~--~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~ 529 (617)
T TIGR00204 455 GYHYDDGPIAVRYPRGNAVG---V--ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDA 529 (617)
T ss_pred HHhCCCCCEEEEEccCCcCC---c--ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 99965 99999998764311 0 111234678899999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCCHH
Q 017714 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQVL 350 (367)
Q Consensus 273 ~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~~~ 350 (367)
+||||||++.|.++++++++|||+|||+..||||++|++.+.+++ ++.++.++|++|.|++++ +.|.++++||++
T Consensus 530 ~~lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~---~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~ 606 (617)
T TIGR00204 530 RFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN---KLVPVKRLGIPDFFIPHGTQEEVLAELGLDTA 606 (617)
T ss_pred CcCCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC---CCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHH
Confidence 999999999999999999999999999999999999999998874 467899999999999875 477888899999
Q ss_pred HHHHHHHHHHh
Q 017714 351 CFLYDSSIDGC 361 (367)
Q Consensus 351 ~I~~~~i~~~l 361 (367)
+|+++ |++++
T Consensus 607 ~I~~~-i~~~~ 616 (617)
T TIGR00204 607 GMEAK-ILAWL 616 (617)
T ss_pred HHHHH-HHHhh
Confidence 99999 98875
No 12
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.6e-60 Score=495.08 Aligned_cols=306 Identities=21% Similarity=0.279 Sum_probs=266.4
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 115 (367)
..++.++|+++|.+++++||+|+++++|.. +.+++ .+|+++| |+||||+||+||||+++|+|||+.|++||+++|
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~---g~~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~f 429 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY 429 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCC---Cccch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEec
Confidence 357999999999999999999999999764 33455 5899999 999999999999999999999999999999995
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
+.|++||||||++++|+ +++||++++++ |..+++|+||++.+ .+++|++|||+|++|+|++|++.++++
T Consensus 430 -s~Fl~RA~DQI~~dval--------~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 500 (677)
T PLN02582 430 -SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVAT 500 (677)
T ss_pred -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 78999999999999997 69999999874 66556999997644 589999999999999999999999999
Q ss_pred hHcC-CCcEEEeccccccCCCCCccccccC--CCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEE
Q 017714 194 AIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (367)
Q Consensus 194 a~~~-~~Pv~ir~~~~~~~~~~~~~~~~~~--~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi 270 (367)
|++. ++|+|||++|.... . ...++ .++.+++||++++++|.|++||++|+|++.|++|++.|+++||+++||
T Consensus 501 al~~~~gPv~IR~pr~~~~-~----~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VI 575 (677)
T PLN02582 501 AAAIDDRPSCFRYPRGNGI-G----VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVA 575 (677)
T ss_pred HHhCCCCCEEEEEecCCCC-C----cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEE
Confidence 9975 59999999876210 0 01111 134578999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCC
Q 017714 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQ 348 (367)
Q Consensus 271 ~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~ 348 (367)
|++|+||||++.|.+.+++++.+||+|||+. ||||++|++.+.+++......++.++|++|.|++++ +.|.+.++||
T Consensus 576 d~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~ 654 (677)
T PLN02582 576 DARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLT 654 (677)
T ss_pred EcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcC
Confidence 9999999999999888888888999999998 999999999998864211125799999999999875 5677788999
Q ss_pred HHHHHHHHHHHHhh
Q 017714 349 VLCFLYDSSIDGCY 362 (367)
Q Consensus 349 ~~~I~~~~i~~~l~ 362 (367)
++.|+++ |+++++
T Consensus 655 ~e~I~~~-i~~~l~ 667 (677)
T PLN02582 655 PSHIAAT-VLNVLG 667 (677)
T ss_pred HHHHHHH-HHHHHh
Confidence 9999999 999985
No 13
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.3e-59 Score=486.14 Aligned_cols=299 Identities=20% Similarity=0.217 Sum_probs=263.0
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 115 (367)
..+++++|+++|.+++++||+++++++|+... +++ ++|.++| |+||||+||+||+|+++|+|||+.|++||+.+|
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~---~~~-~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGV---FGL-KEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIFVN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccccc---cCc-HHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEEee
Confidence 46899999999999999999999999987533 344 7899999 999999999999999999999999999999775
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCCchhH-HHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHC-YAAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH~~~-~~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
++|++||||||++++|+ +++||++++++ |.. ++|+||++. |+++||++|||+|++|+|+.|++.++++
T Consensus 352 -s~Fl~ra~dQi~~d~a~--------~~lpv~~~~~~~g~~-~dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~ 421 (581)
T PRK12315 352 -STFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSIS-GNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEW 421 (581)
T ss_pred -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCccc-CCCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 78899999999999997 68999999875 444 499999754 4599999999999999999999999999
Q ss_pred hHcC-CCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCceEEEE
Q 017714 194 AIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVIN 271 (367)
Q Consensus 194 a~~~-~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~-Gi~v~vi~ 271 (367)
|++. ++|+|||++|..+... +.....+..+++.++++|+|++||++|++++.|++|+++|+++ ||+++|||
T Consensus 422 a~~~~~gP~~ir~~r~~~~~~-------~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid 494 (581)
T PRK12315 422 ALTQHEHPVAIRVPEHGVESG-------PTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLIN 494 (581)
T ss_pred HHhCCCCcEEEEEcCCccCCC-------CCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEe
Confidence 9986 7999999988744211 1111234456899999999999999999999999999999999 99999999
Q ss_pred eeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCCH
Q 017714 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQV 349 (367)
Q Consensus 272 ~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~~ 349 (367)
++|+||||++.+.+++++++.+||+|||+..||||++|++.+.++ ..++.++|++|.|++++ +.+.++++||+
T Consensus 495 ~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~-----~~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~ 569 (581)
T PRK12315 495 PKFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNS-----DMKVLNYGAKKEFNDRVPVEELYKRNHLTP 569 (581)
T ss_pred cCcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcC-----CCeEEEecCCCCCCCCCCHHHHHHHHCcCH
Confidence 999999999999888888889999999999999999999999765 24799999999998764 57788889999
Q ss_pred HHHHHHHHHHHhh
Q 017714 350 LCFLYDSSIDGCY 362 (367)
Q Consensus 350 ~~I~~~~i~~~l~ 362 (367)
++|+++ |+++++
T Consensus 570 ~~I~~~-i~~~l~ 581 (581)
T PRK12315 570 EQIVED-ILSVLK 581 (581)
T ss_pred HHHHHH-HHHHhC
Confidence 999999 998764
No 14
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.4e-59 Score=488.32 Aligned_cols=307 Identities=22% Similarity=0.299 Sum_probs=268.9
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 115 (367)
..+|+++|+++|.+++++||+|+++++|+..++ ++ .+|+++| |+||||+||+||+|+++|+|||+.|++||+++|
T Consensus 318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~~-~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f 392 (641)
T PRK12571 318 APSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---GL-DKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVY 392 (641)
T ss_pred chhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---Ch-HHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEeh
Confidence 358999999999999999999999999986433 33 7899999 999999999999999999999999999999995
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCCCCCCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
+.|++||+|||++++|+ +++||++++. .|...++|+||++.. +++||++||++|++|+|+.|++.++++
T Consensus 393 -~~Fl~ra~dQI~~~~a~--------~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~ 463 (641)
T PRK12571 393 -STFLQRGYDQLLHDVAL--------QNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRT 463 (641)
T ss_pred -HHHHHHHHHHHHHHHhh--------cCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 78899999999999996 6999999974 466555999997644 599999999999999999999999999
Q ss_pred hHcC-CCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEe
Q 017714 194 AIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (367)
Q Consensus 194 a~~~-~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~ 272 (367)
|++. ++|+|||++|..+.. ..++++++.+++||+.++++|+|++||++|+|++.|++|++.|+++||+++|||+
T Consensus 464 a~~~~~~P~~ir~~r~~~~~-----~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~ 538 (641)
T PRK12571 464 AAAHDDGPIAVRFPRGEGVG-----VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADP 538 (641)
T ss_pred HHhCCCCcEEEEEecCcCCc-----cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 9994 899999998763311 1122334567899999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCCHH
Q 017714 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQVL 350 (367)
Q Consensus 273 ~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~~~ 350 (367)
+||+|||++.+.+.+ ++.+++|+|||+..||||++|++.+.++++..++.|+.++|++|.|++++ +.+.+++++|++
T Consensus 539 ~~lkPlD~~~i~sv~-k~~~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~ 617 (641)
T PRK12571 539 RFVKPLDEALTDLLV-RHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAP 617 (641)
T ss_pred CcCCCcCHHHHHHHh-hhCCEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHH
Confidence 999999999986544 55589999999999999999999999876543467999999999998875 466777899999
Q ss_pred HHHHHHHHHHhhh
Q 017714 351 CFLYDSSIDGCYK 363 (367)
Q Consensus 351 ~I~~~~i~~~l~~ 363 (367)
+|+++ |++++++
T Consensus 618 ~I~~~-i~~~l~~ 629 (641)
T PRK12571 618 DIAAA-VTGALAR 629 (641)
T ss_pred HHHHH-HHHHHHh
Confidence 99999 9999865
No 15
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=6.1e-58 Score=475.06 Aligned_cols=297 Identities=27% Similarity=0.367 Sum_probs=264.0
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~ 116 (367)
.++|++|+++|.+++++||+++++++|+..++ ++ ..|.++| |+||||+||+||+|+++|+|||++|++||+++|
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~~-~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f- 352 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---GL-VKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIY- 352 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---CH-HHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEee-
Confidence 68999999999999999999999999985433 33 5699999 999999999999999999999999999999995
Q ss_pred ccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCCCCCCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 017714 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAA 194 (367)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a 194 (367)
+.|++||+|||++++|+ +++||+++++ +|..+++|+||++.. +++||++||++|++|+|++|++.+++++
T Consensus 353 ~~F~~ra~dQi~~~~a~--------~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a 424 (580)
T PRK05444 353 STFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA 424 (580)
T ss_pred HHHHHHHHHHHHHHhhh--------cCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 67889999999999997 6899999986 466555899997644 5999999999999999999999999999
Q ss_pred HcC-CCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 195 ~~~-~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
++. ++|+|||++|..+.. . . .++.+.+++|+++++++|+|++||++|++++.|++|+++|+ +++|||++
T Consensus 425 ~~~~~~P~~ir~~r~~~~~---~--~-~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~ 494 (580)
T PRK05444 425 LAYDDGPIAIRYPRGNGVG---V--E-LPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDAR 494 (580)
T ss_pred HhCCCCcEEEEecCCCCCC---C--C-CCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeC
Confidence 976 899999998864321 0 1 12246688999999999999999999999999999999996 89999999
Q ss_pred ecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCCHHH
Q 017714 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQVLC 351 (367)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~~~~ 351 (367)
|++|||++.|.+++++++++||+|||+..||||++|++.+.++++ +.|+.++|++|.|++++ +.+.+++++|+++
T Consensus 495 ~i~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~ 571 (580)
T PRK05444 495 FVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEG 571 (580)
T ss_pred cCCccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999988753 56899999999998875 5688889999999
Q ss_pred HHHHHHHHHh
Q 017714 352 FLYDSSIDGC 361 (367)
Q Consensus 352 I~~~~i~~~l 361 (367)
|+++ |++++
T Consensus 572 I~~~-i~~~~ 580 (580)
T PRK05444 572 IARR-ILELL 580 (580)
T ss_pred HHHH-HHhhC
Confidence 9999 88753
No 16
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.6e-56 Score=457.52 Aligned_cols=274 Identities=23% Similarity=0.343 Sum_probs=235.8
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 115 (367)
.++++++|+++|.+++++||+|+++++|+.. |+ + +..|.++| |+||||+|||||+|+++|+|||++|+|||+++|
T Consensus 356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt-~-~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~f 430 (641)
T PLN02234 356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GT-M-LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIY 430 (641)
T ss_pred CCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--Cc-c-hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEeh
Confidence 4689999999999999999999999999853 33 2 36789999 999999999999999999999999999999995
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCCCCCCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
+.|++||||||+|++|+ +++||++++. .|...++|+||++.. .+++|++|||+|++|+|+.|++.++++
T Consensus 431 -s~Fl~RA~DQI~~dva~--------~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 431 -SSFMQRAYDQVVHDVDL--------QKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred -HHHHHHHHHHHHHHHhh--------cCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 78899999999999996 6999999974 466545999998755 489999999999999999999999999
Q ss_pred hHcC-CCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEe
Q 017714 194 AIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (367)
Q Consensus 194 a~~~-~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~ 272 (367)
++.. ++|+|||++|..+... ...+. ...+.+++||++++++|.|++||++|+|++.|++|+++|+++||+++|||+
T Consensus 502 a~~~~~~Pv~ir~~R~~~~~~-~~~~~--~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~ 578 (641)
T PLN02234 502 AAAIDDRPSCFRYHRGNGIGV-SLPPG--NKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADA 578 (641)
T ss_pred HHhCCCCCEEEEeeccccccc-ccCCC--CccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 8865 5999999998744211 01000 113457899999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEE
Q 017714 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVER 327 (367)
Q Consensus 273 ~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ 327 (367)
+|+||||++.+.+++++++.|||+|||.. ||||++|++.+++++.-..+-|++|
T Consensus 579 rsikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~~~~~~~~~~ 632 (641)
T PLN02234 579 RFCKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGKLKVYR 632 (641)
T ss_pred CCcCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999999888888889999999987 9999999999998864222335555
No 17
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.5e-54 Score=385.73 Aligned_cols=320 Identities=35% Similarity=0.630 Sum_probs=296.4
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 114 (367)
++|..-++++++|...+++||+.+++++|++ .+|+|..+.+++++||.+|+||++++||.++|+.+|+|.+|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaei 117 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEI 117 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccc-cceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEE
Confidence 6788999999999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccc-cEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
+++++...|+|||.|.+++.+|++|.+.|+ .++++.+.|..+..+-.|||+.|++|.+.||++|+.|.+|.|++.++..
T Consensus 118 qfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakgllls 197 (362)
T KOG0525|consen 118 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLS 197 (362)
T ss_pred eeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceeee
Confidence 999999999999999999999999999999 6888888665433466799999999999999999999999999999999
Q ss_pred hHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHh-cCCceEEEEe
Q 017714 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAK-EGISAEVINL 272 (367)
Q Consensus 194 a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~-~Gi~v~vi~~ 272 (367)
++++++|++++++|.+|+... .++|..+|.++++.++++|+|+|+|+++||..+|.++|++..-++ .|++++|||+
T Consensus 198 cirdpnp~iffepk~lyr~a~---edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidl 274 (362)
T KOG0525|consen 198 CIRDPNPCIFFEPKILYRQAV---EDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDL 274 (362)
T ss_pred eccCCCceEEechHHHHHHhh---hhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEee
Confidence 999999999999999998642 467788999999999999999999999999999999998886554 4999999999
Q ss_pred eecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHH
Q 017714 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCF 352 (367)
Q Consensus 273 ~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I 352 (367)
.+|-|||++.+.++++|++++++-.|..+.||+|++|++.+.+++|..+.+|+-|++.-|.+.|+ ..+-++.+|...|
T Consensus 275 kti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~--vfepfy~ptk~ki 352 (362)
T KOG0525|consen 275 KTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH--VFEPFYMPTKNKI 352 (362)
T ss_pred ecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc--cccccccCcHhHH
Confidence 99999999999999999999999999999999999999999999998899999999999988776 3455778999999
Q ss_pred HHHHHHHHh
Q 017714 353 LYDSSIDGC 361 (367)
Q Consensus 353 ~~~~i~~~l 361 (367)
.++ |++..
T Consensus 353 ~da-ik~~v 360 (362)
T KOG0525|consen 353 LDA-IKKTV 360 (362)
T ss_pred HHH-HHHhc
Confidence 999 88754
No 18
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=2e-50 Score=422.39 Aligned_cols=299 Identities=18% Similarity=0.169 Sum_probs=244.1
Q ss_pred cccccccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCccccccc-chhHHHHhCCCceeechhhHHHHHHHHHHHhc-
Q 017714 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI-SKGLLEKYGPERVLDTPITEAGFTGIGVGAAY- 105 (367)
Q Consensus 28 ~~~~~~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~-~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~- 105 (367)
.+|...++++++|++++++|.++++++|+++++++|++.++.+... ...|.++| |+||||+||+||+|+++|+|||+
T Consensus 340 ~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~ 418 (653)
T TIGR00232 340 PEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALH 418 (653)
T ss_pred hhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHc
Confidence 3454345678999999999999999999999999999766544110 01278889 99999999999999999999999
Q ss_pred cCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCC-CCCCchhHH--HHHHhcCCCcEEEee
Q 017714 106 YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQHSHCY--AAWYASVPGLKVLSP 181 (367)
Q Consensus 106 ~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g-~G~tH~~~~--~a~~~~iP~~~V~~P 181 (367)
.|++||++|| ..|++|+++|||+. |+ +++||+++++ +|.+.| +|+|| |.. .++||++||++|+.|
T Consensus 419 gG~~p~~~tf-~~F~~r~~~~ir~~-a~--------~~lpV~~v~th~g~~~G~dG~TH-q~iedia~lr~iPn~~v~~P 487 (653)
T TIGR00232 419 GGFKPYGGTF-LMFVDYARPAIRLA-AL--------MKLPVIYVYTHDSIGVGEDGPTH-QPIEQLASLRAIPNLSVWRP 487 (653)
T ss_pred CCCeEEEEEh-HHHHHHHHHHHHHH-Hh--------cCCCEEEEEeCCccCCCCCCccc-CCHHHHHHHhcCCCCEEEee
Confidence 6799999997 56788999999987 76 6899999986 577777 89999 544 489999999999999
Q ss_pred CCHHHHHHHHHHhH-cCCCcEEEeccccccCCCCCccccccCCC-ccccCCcEEEe--eeCCcEEEEEechhHHHHHHHH
Q 017714 182 YSSEDARGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIE--REGKDVTITAFSKIVGLSLKAA 257 (367)
Q Consensus 182 ~d~~e~~~~~~~a~-~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~-~~~~~Gk~~v~--~~g~di~Iia~G~~v~~al~Aa 257 (367)
+|+.|+..++++++ +.++|+|||++|... | .+++.+ ..+..|+ +++ ++|.|++||++|++++.|++|+
T Consensus 488 aD~~E~~~~~~~a~~~~~gP~~irl~r~~~----~---~~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa 559 (653)
T TIGR00232 488 CDGNETAAAWKYALESQDGPTALILSRQNL----P---QLEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAA 559 (653)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEEcCCcc----C---CCCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHH
Confidence 99999999999999 568999999887522 1 112222 3466776 556 6789999999999999999999
Q ss_pred HHHHhcCCceEEEEeeecCCCCHHH---HHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCC
Q 017714 258 EILAKEGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP 334 (367)
Q Consensus 258 ~~L~~~Gi~v~vi~~~~i~P~d~~~---l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~ 334 (367)
++|+++||+++|||++|++|||++. +.+.+++++.+||+|||+. +||. ..+ .....++|+ |.|
T Consensus 560 ~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~----~~~--------~~~~~~igv-d~f 625 (653)
T TIGR00232 560 KKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWY----KYA--------GLVGAILGM-DSF 625 (653)
T ss_pred HHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHHH----Hhc--------CCcceEEEe-cCC
Confidence 9999999999999999999997754 7777878888999999986 3442 111 111257898 788
Q ss_pred CCCH--HHHHHHhCCCHHHHHHHHHHHHh
Q 017714 335 MPYA--ANLERMAVPQVLCFLYDSSIDGC 361 (367)
Q Consensus 335 ~~~~--~~l~~~~~l~~~~I~~~~i~~~l 361 (367)
+.++ +.|.+++++|++.|+++ |++++
T Consensus 626 g~sg~~~~L~~~~Glt~e~I~~~-i~~~~ 653 (653)
T TIGR00232 626 GESAPGDKLFEEFGFTVENVVAK-AKKLL 653 (653)
T ss_pred cCCCCHHHHHHHhCCCHHHHHHH-HHHhC
Confidence 8764 56777889999999999 98764
No 19
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=1.1e-49 Score=416.69 Aligned_cols=294 Identities=19% Similarity=0.139 Sum_probs=238.1
Q ss_pred ccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCccccc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhc-cCCee
Q 017714 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKP 110 (367)
Q Consensus 33 ~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~-~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~-~G~~p 110 (367)
...++++|++++++|.++++++|+++++++|++.++.+. +-...|.++| |+||||+||+||+|+++|+|||+ .|++|
T Consensus 351 ~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P 429 (663)
T PRK12753 351 NPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVP 429 (663)
T ss_pred cccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeE
Confidence 345789999999999999999999999999998765441 1125688889 99999999999999999999999 78999
Q ss_pred EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCC-CCCCchh-HHHHHHhcCCCcEEEeeCCHHHH
Q 017714 111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQHSH-CYAAWYASVPGLKVLSPYSSEDA 187 (367)
Q Consensus 111 ~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g-~G~tH~~-~~~a~~~~iP~~~V~~P~d~~e~ 187 (367)
|++|| +.|++|++||||++ |+ +++||++++. +|.+.| +|+||+. .+.++||.+||++|+.|+|++|+
T Consensus 430 ~~~tf-~~F~~r~~~qir~~-a~--------~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~ 499 (663)
T PRK12753 430 YTATF-LMFVEYARNAARMA-AL--------MKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEA 499 (663)
T ss_pred EEEeh-HHHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHH
Confidence 99997 56788999999986 77 6899999965 577777 9999942 34599999999999999999999
Q ss_pred HHHHHHhHc-CCCcEEEeccccccCCCCCccccccCC---CccccCCcEEEeeeCC---cEEEEEechhHHHHHHHHHHH
Q 017714 188 RGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS---SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEIL 260 (367)
Q Consensus 188 ~~~~~~a~~-~~~Pv~ir~~~~~~~~~~~~~~~~~~~---~~~~~~Gk~~v~~~g~---di~Iia~G~~v~~al~Aa~~L 260 (367)
..+++++++ .++|+|||.+|. ..| .++.+ ...+..|+ ++++++. |++||++|+++++|++|+++|
T Consensus 500 ~~~~~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L 571 (663)
T PRK12753 500 AVAWKLAIERHNGPTALILSRQ----NLA---QQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKL 571 (663)
T ss_pred HHHHHHHHhcCCCCEEEEecCC----CCC---CCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 999999998 589999998775 221 11221 12355665 7778754 999999999999999999999
Q ss_pred HhcCCceEEEEeeecCCCCHHHH--HHH-Hh--cCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCC
Q 017714 261 AKEGISAEVINLRSIRPLDRSTI--NAS-VR--KTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335 (367)
Q Consensus 261 ~~~Gi~v~vi~~~~i~P~d~~~l--~~~-~~--~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~ 335 (367)
+++||+++|||++|+||||++.+ ++. +. .++ .|++|+|. ++.+.+. ...+..++|+ |.|+
T Consensus 572 ~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~-~vtvE~~~---------~~~~~~~----~~~~~~~iGv-d~Fg 636 (663)
T PRK12753 572 TAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTA-RVAVEAGI---------ADYWYKY----VGLKGAIIGM-TGFG 636 (663)
T ss_pred HhcCCCcEEEECCcCCccchhHHHHHHhhcccccce-EEEEccCh---------HHHHHHH----cCCCCeEEEe-CCCc
Confidence 99999999999999999999986 221 11 233 49999982 2333332 1346778999 6787
Q ss_pred CCH--HHHHHHhCCCHHHHHHHHHHHHh
Q 017714 336 PYA--ANLERMAVPQVLCFLYDSSIDGC 361 (367)
Q Consensus 336 ~~~--~~l~~~~~l~~~~I~~~~i~~~l 361 (367)
.++ +.|.+++++|++.|+++ +++++
T Consensus 637 ~sg~~~~l~~~~Glt~~~Iv~~-i~~~~ 663 (663)
T PRK12753 637 ESAPADKLFPFFGFTVENIVAK-AKKLL 663 (663)
T ss_pred CcCCHHHHHHHhCCCHHHHHHH-HHHhC
Confidence 664 56778889999999999 88764
No 20
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=4.2e-50 Score=420.48 Aligned_cols=299 Identities=17% Similarity=0.169 Sum_probs=242.5
Q ss_pred ccccccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCccccc-ccchhHHHHhCC-CceeechhhHHHHHHHHHHHhc-
Q 017714 29 NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAY- 105 (367)
Q Consensus 29 ~~~~~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~-~~~~~~~~~~~p-~R~i~~GIaE~~~vg~AaGlA~- 105 (367)
+|....+++++|++++++|.++++.+|+++.+++|++.++.+. +-...|+++| | +||||+||+||||+++|+|||+
T Consensus 347 ~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~ 425 (661)
T PTZ00089 347 KYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAH 425 (661)
T ss_pred hhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHHc
Confidence 3344446689999999999999999999999999997655321 0013688889 8 8999999999999999999999
Q ss_pred cCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCC-CCCCchh-HHHHHHhcCCCcEEEeeC
Q 017714 106 YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQHSH-CYAAWYASVPGLKVLSPY 182 (367)
Q Consensus 106 ~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g-~G~tH~~-~~~a~~~~iP~~~V~~P~ 182 (367)
.|++||++|| +.|++||+||||+. |+ +++||++++. +|.+.| +|+||+. .|.++||+|||++|+.|+
T Consensus 426 ~G~~P~~~tf-~~Fl~Ra~dqir~~-al--------~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~Pa 495 (661)
T PTZ00089 426 GGFIPFGATF-LNFYGYALGAVRLA-AL--------SHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPA 495 (661)
T ss_pred CCCeEEEEeh-HHHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecC
Confidence 7899999997 67889999999876 77 6999999974 566666 9999942 445999999999999999
Q ss_pred CHHHHHHHHHHhH-cCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeC---CcEEEEEechhHHHHHHHHH
Q 017714 183 SSEDARGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG---KDVTITAFSKIVGLSLKAAE 258 (367)
Q Consensus 183 d~~e~~~~~~~a~-~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g---~di~Iia~G~~v~~al~Aa~ 258 (367)
|++|+..++++++ +.++|+|||++|. ..| .++..+..+..+++++++++ .|++||++|+++.+|++|++
T Consensus 496 D~~E~~~~l~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~ 568 (661)
T PTZ00089 496 DGTETSGAYALALANAKTPTILCLSRQ----NTP---PLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAK 568 (661)
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEecCC----CCC---CcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHH
Confidence 9999999999999 4579999998875 221 12222334445667788874 79999999999999999999
Q ss_pred HHHhcCCceEEEEeeecCCCCHHHHHHH---Hh-cCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCC
Q 017714 259 ILAKEGISAEVINLRSIRPLDRSTINAS---VR-KTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP 334 (367)
Q Consensus 259 ~L~~~Gi~v~vi~~~~i~P~d~~~l~~~---~~-~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~ 334 (367)
.|++ |++++|||++|+||||.+.+... +. +...++++|+|+..| |. .. ...++|++| |
T Consensus 569 ~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g-~~---------~~------~~~~igv~~-F 630 (661)
T PTZ00089 569 ALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFG-WE---------KY------SHVHVGISG-F 630 (661)
T ss_pred HHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHH-HH---------hc------CCeEEECCC-c
Confidence 9999 99999999999999999986532 33 345689999997643 21 10 125899998 8
Q ss_pred CCCH--HHHHHHhCCCHHHHHHHHHHHHhhhc
Q 017714 335 MPYA--ANLERMAVPQVLCFLYDSSIDGCYKF 364 (367)
Q Consensus 335 ~~~~--~~l~~~~~l~~~~I~~~~i~~~l~~~ 364 (367)
+.++ +.|.+++++|++.|+++ |++++.+|
T Consensus 631 g~sg~~~~l~~~~Gl~~e~I~~~-i~~~l~~~ 661 (661)
T PTZ00089 631 GASAPANALYKHFGFTVENVVEK-ARALAARF 661 (661)
T ss_pred cccCCHHHHHHHhCCCHHHHHHH-HHHHhhhC
Confidence 8764 56778889999999999 99998775
No 21
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=3.7e-50 Score=420.34 Aligned_cols=292 Identities=21% Similarity=0.231 Sum_probs=237.3
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCccccccc-chhHH-HHhCCCceeechhhHHHHHHHHHHHhccC-CeeE
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI-SKGLL-EKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPV 111 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~-~~~~~-~~~~p~R~i~~GIaE~~~vg~AaGlA~~G-~~p~ 111 (367)
.++++|++|+++|.+++++||+++++++|++.+++...+ .+.|. ++| |+||||+||+||+|+++|+|||+.| ++||
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv 395 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGGFIPF 395 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCCCeEE
Confidence 456789999999999999999999999999754332111 01122 577 8999999999999999999999999 9999
Q ss_pred EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCC-CCCCchhHHH--HHHhcCCCcEEEeeCCHHHH
Q 017714 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQHSHCYA--AWYASVPGLKVLSPYSSEDA 187 (367)
Q Consensus 112 ~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g-~G~tH~~~~~--a~~~~iP~~~V~~P~d~~e~ 187 (367)
++|| ..|++|++|||++. |+ +++||++++. .|.+.| +|+|| |+.+ ++||++||++|++|+|++|+
T Consensus 396 ~~t~-~~F~~r~~~qir~~-~~--------~~~pv~~v~~~~G~~~g~~G~tH-q~~edia~~r~iP~~~V~~P~d~~e~ 464 (624)
T PRK05899 396 GGTF-LVFSDYARNAIRLA-AL--------MKLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLTVIRPADANET 464 (624)
T ss_pred EEEc-HHHHHHHHHHHHHH-Hh--------cCCCEEEEEECCCcCcCCCCCCc-ccHHHHHHHHhCCCcEEEeCCCHHHH
Confidence 9997 55679999999985 65 5899999975 477665 99999 6554 89999999999999999999
Q ss_pred HHHHHHhHcC-CCcEEEeccccccCCCCCccccccC--CCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcC
Q 017714 188 RGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG 264 (367)
Q Consensus 188 ~~~~~~a~~~-~~Pv~ir~~~~~~~~~~~~~~~~~~--~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~G 264 (367)
+.+++++++. ++|+|||++|.. .| ..++ ..+.++.|+ .++++|.|++||++|+++++|++|++.|+++|
T Consensus 465 ~~~l~~a~~~~~~P~~ir~~r~~----~~---~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~g 536 (624)
T PRK05899 465 AAAWKYALERKDGPSALVLTRQN----LP---VLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEG 536 (624)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCC----CC---CcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 9999999998 899999987642 21 1122 225577886 77899999999999999999999999999999
Q ss_pred CceEEEEeeecCCCCHHH---HHHHH-hcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--
Q 017714 265 ISAEVINLRSIRPLDRST---INASV-RKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA-- 338 (367)
Q Consensus 265 i~v~vi~~~~i~P~d~~~---l~~~~-~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~-- 338 (367)
|+++|||++||+|||++. +...+ .....+|++|++.. +|| ..+ +..+++++|++| |+.++
T Consensus 537 i~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~----~~~--------~~~~~~~iGv~~-f~~~g~~ 602 (624)
T PRK05899 537 IKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGW----YKY--------VGLDGKVLGIDT-FGASAPA 602 (624)
T ss_pred CcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCc-cch----hhh--------cCCCceEEECCC-CCCCCCH
Confidence 999999999999999993 44444 33456788887665 565 111 134678999999 88764
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Q 017714 339 ANLERMAVPQVLCFLYDSSIDGC 361 (367)
Q Consensus 339 ~~l~~~~~l~~~~I~~~~i~~~l 361 (367)
+.|.+++++|++.|+++ |++++
T Consensus 603 ~~l~~~~gl~~~~I~~~-i~~~~ 624 (624)
T PRK05899 603 DELFKEFGFTVENIVAA-AKELL 624 (624)
T ss_pred HHHHHHhCCCHHHHHHH-HHHhC
Confidence 56777889999999999 88764
No 22
>PLN02790 transketolase
Probab=100.00 E-value=6.2e-49 Score=411.23 Aligned_cols=301 Identities=17% Similarity=0.145 Sum_probs=244.5
Q ss_pred cccccccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCccccc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc
Q 017714 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY 106 (367)
Q Consensus 28 ~~~~~~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~-~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~ 106 (367)
..|.....+.++|++++++|..+++.+|+++++++|++.++.++ .-+..|+++|+|+||||+||+||||+++|+|||++
T Consensus 335 ~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~ 414 (654)
T PLN02790 335 PTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 414 (654)
T ss_pred hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhc
Confidence 34433334578999999999999999999999999998765532 11257888833999999999999999999999996
Q ss_pred --CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCC-CCCCchh-HHHHHHhcCCCcEEEee
Q 017714 107 --GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQHSH-CYAAWYASVPGLKVLSP 181 (367)
Q Consensus 107 --G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g-~G~tH~~-~~~a~~~~iP~~~V~~P 181 (367)
|++||++||. .|+.|+++|||+. |+ +++||++++. +|.+.| +|+||+. .+.++||+|||++|+.|
T Consensus 415 G~G~~P~~~tf~-~F~~~~~~~ir~~-al--------~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~P 484 (654)
T PLN02790 415 SSGLIPYCATFF-VFTDYMRAAMRLS-AL--------SEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRP 484 (654)
T ss_pred CCCcEEEEEecH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeC
Confidence 5999999985 5667999999876 76 6999999985 466666 9999942 44599999999999999
Q ss_pred CCHHHHHHHHHHhHc-CCCcEEEeccccccCCCCCccccccCC-CccccCCcEEEeeeC-----CcEEEEEechhHHHHH
Q 017714 182 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIEREG-----KDVTITAFSKIVGLSL 254 (367)
Q Consensus 182 ~d~~e~~~~~~~a~~-~~~Pv~ir~~~~~~~~~~~~~~~~~~~-~~~~~~Gk~~v~~~g-----~di~Iia~G~~v~~al 254 (367)
+|++|+..+++++++ .++|+|||.+|.. .| .++.+ ...+..|+ ++++++ .|++||++|+++++|+
T Consensus 485 aD~~E~~~~l~~al~~~~gP~~irl~R~~----~~---~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al 556 (654)
T PLN02790 485 ADGNETAGAYKVAVTNRKRPTVLALSRQK----VP---NLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAA 556 (654)
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEecCCC----CC---CCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHH
Confidence 999999999999997 5799999988752 21 11221 24467887 555663 7999999999999999
Q ss_pred HHHHHHHhcCCceEEEEeeecCCCCHHHHH---HHH-hcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEec
Q 017714 255 KAAEILAKEGISAEVINLRSIRPLDRSTIN---ASV-RKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAG 330 (367)
Q Consensus 255 ~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~---~~~-~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~ 330 (367)
+|++.|+++||+++|||++|++|||++.+. +.+ ++++.+|++|+|+. +||++ .+ ..+..++|+
T Consensus 557 ~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~----~~--------~~~~~~igv 623 (654)
T PLN02790 557 KAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEK----YV--------GSKGKVIGV 623 (654)
T ss_pred HHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHH----hc--------CCCceEEEe
Confidence 999999999999999999999999999754 556 66778999999986 77654 11 224568999
Q ss_pred CCCCCCCH--HHHHHHhCCCHHHHHHHHHHHHh
Q 017714 331 ADVPMPYA--ANLERMAVPQVLCFLYDSSIDGC 361 (367)
Q Consensus 331 ~d~~~~~~--~~l~~~~~l~~~~I~~~~i~~~l 361 (367)
|.|+.++ +.+.++++||++.|+++ |++++
T Consensus 624 -d~Fg~sg~~~~l~~~~Glt~e~I~~~-i~~~~ 654 (654)
T PLN02790 624 -DRFGASAPAGILYKEFGFTVENVVAA-AKSLL 654 (654)
T ss_pred -CCCcCcCCHHHHHHHhCCCHHHHHHH-HHHhC
Confidence 8888764 56777889999999999 88764
No 23
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-49 Score=393.34 Aligned_cols=312 Identities=21% Similarity=0.278 Sum_probs=255.8
Q ss_pred ccccccccccccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHH
Q 017714 23 VVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVG 102 (367)
Q Consensus 23 ~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaG 102 (367)
|...+++|+...+..++|++|+++|.++++.+|+++.+++|+.+++.+ +-|.++| |+|||++||+||||+++|+|
T Consensus 306 ~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t----d~~~~~~-p~R~i~~giaEq~mv~ia~G 380 (632)
T KOG0523|consen 306 WEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT----DFFPKRF-PERFIECGIAEQNMVGIANG 380 (632)
T ss_pred ccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh----hhccccC-ccceEEEeeehhhhHHhhhc
Confidence 556688999976659999999999999999999999999999876543 4566788 99999999999999999999
Q ss_pred HhccCC-eeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEe-CCCCCCC-CCCCchh-HHHHHHhcCCCcEE
Q 017714 103 AAYYGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG-VGAQHSH-CYAAWYASVPGLKV 178 (367)
Q Consensus 103 lA~~G~-~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~G~~~g-~G~tH~~-~~~a~~~~iP~~~V 178 (367)
+|..|. +||+.|| +.|++||+||+|+++- .+.+++.++ +++.+.| |||||+. .+.++||++||++|
T Consensus 381 ~a~~g~~~Pf~~tf-~~F~trA~dqvr~~a~---------s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v 450 (632)
T KOG0523|consen 381 IACRGRTIPFCGTF-AAFFTRAFDQVRMGAL---------SQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIV 450 (632)
T ss_pred hhcCCCccchhHHH-HHHHHHhhhheeehhh---------ccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceE
Confidence 999998 9999997 6788999999999873 244555544 5677777 9999942 44599999999999
Q ss_pred EeeCCHHHHHHHHHHhHcCCC-cEEEeccccccCCCCCccccccCCCccccCCcEE-EeeeCC-cEEEEEechhHHHHHH
Q 017714 179 LSPYSSEDARGLLKAAIRDPD-PVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IEREGK-DVTITAFSKIVGLSLK 255 (367)
Q Consensus 179 ~~P~d~~e~~~~~~~a~~~~~-Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~-v~~~g~-di~Iia~G~~v~~al~ 255 (367)
+.|+|..|+..++..|++.++ |.+++.+|. +.| .++....+..||+. +++++. |+++|++|+++++|++
T Consensus 451 ~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~----~~~----~~~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~ 522 (632)
T KOG0523|consen 451 FRPADGNETENAVATAANTKGTPSIRTLSRQ----NLP----IYNNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLE 522 (632)
T ss_pred EecCchHHHHHHHHHHHhcCCCeeEEEecCc----ccc----ccCCCchhhhccccEEEecCCCCEEEEeccHHHHHHHH
Confidence 999999999999999999765 888886654 211 12334447788887 667776 9999999999999999
Q ss_pred HHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC-eEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCC
Q 017714 256 AAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP 334 (367)
Q Consensus 256 Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~-~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~ 334 (367)
|++.|+++||+++|+|++|+||||...|+++.+.++ ++.|+|+|+..||++..+....... -...+..+++. .|
T Consensus 523 AA~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~----~~~~~~~~~~~-~~ 597 (632)
T KOG0523|consen 523 AAELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKY----PGILVPSLGVD-TF 597 (632)
T ss_pred HHHHHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhccc----CCccceeeccc-cC
Confidence 999999999999999999999999999998888775 7888888888888887766655432 12234566664 56
Q ss_pred CCCH--HHHHHHhCCCHHHHHHHHHHHHhhh
Q 017714 335 MPYA--ANLERMAVPQVLCFLYDSSIDGCYK 363 (367)
Q Consensus 335 ~~~~--~~l~~~~~l~~~~I~~~~i~~~l~~ 363 (367)
+.++ .++.+.+++|+++|+++ ++.++.+
T Consensus 598 ~~sG~p~ell~~fGit~~~Ia~~-a~~~~~~ 627 (632)
T KOG0523|consen 598 GRSGPPPELLKMFGITARHIAAA-ALSLIGK 627 (632)
T ss_pred CcCCCCHHHHHHhCCCHHHHHHH-HHHHHhh
Confidence 5443 46667789999999999 9999875
No 24
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=1.1e-46 Score=396.53 Aligned_cols=308 Identities=17% Similarity=0.163 Sum_probs=254.8
Q ss_pred ccccccHHHHHHHHHHHHHhh---CCcEEEEecCCCCccccccc---------------------chhHHHHhCCCceee
Q 017714 33 AVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLD 88 (367)
Q Consensus 33 ~~~~~~~r~a~~~~L~~l~~~---d~~vv~l~aDl~~~~g~~~~---------------------~~~~~~~~~p~R~i~ 88 (367)
.+++++++.||+++|.+|++. .++||.+.+|++.++|.-++ ...+.+.+ |+||||
T Consensus 486 ~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie 564 (889)
T TIGR03186 486 EGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILE 564 (889)
T ss_pred CCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEE
Confidence 347899999999997777654 78899999999887633221 12345678 999999
Q ss_pred chhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCC-CCC-CC
Q 017714 89 TPITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAG-VG 159 (367)
Q Consensus 89 ~GIaE~~~vg--~AaGlA~~----G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~-~~g-~G 159 (367)
+||+||+|++ +|+|+|++ |++||+.+|++|.++|++|||+++ |+ ++.++++++. .|. +.+ +|
T Consensus 565 ~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~--------~~a~v~lvG~~aG~tTlg~eG 635 (889)
T TIGR03186 565 EGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-AD--------QRARGFLIGATSGKTTLGGEG 635 (889)
T ss_pred echhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hh--------cCCCcEEEEECCCccCCCCCc
Confidence 9999999999 99999999 889999998665579999999998 66 5778777765 466 455 89
Q ss_pred CCch-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc------CCCcEEEeccccccCCCCCccccccCCC-ccccCCc
Q 017714 160 AQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR------DPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGK 231 (367)
Q Consensus 160 ~tH~-~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~------~~~Pv~ir~~~~~~~~~~~~~~~~~~~~-~~~~~Gk 231 (367)
.||+ ..+.+++|.+||++|+.|+|+.|+..+++++++ .++|+|||..+..+. . +.+++++ ..++.|+
T Consensus 636 ~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~----~-p~~~~~~~~~~~~gi 710 (889)
T TIGR03186 636 LQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYA----Q-PSLPEDRLDAVRRGI 710 (889)
T ss_pred ccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCC----C-CCcCCCcccchhcch
Confidence 9994 355699999999999999999999999999877 678999997665321 1 2223332 2244454
Q ss_pred --E-EEee----eCCcEEEEEechhHHHHHHHHHHHHhc-CCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCC---C
Q 017714 232 --A-KIER----EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG---F 300 (367)
Q Consensus 232 --~-~v~~----~g~di~Iia~G~~v~~al~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~---~ 300 (367)
+ ++++ +|.|++|+++|.++++|++|+++|+++ ||+++|+|++|+||||++.+. ++++++++++||| +
T Consensus 711 ~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~ 788 (889)
T TIGR03186 711 LKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPH 788 (889)
T ss_pred hheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCccccccccccc
Confidence 5 6777 578999999999999999999999998 999999999999999999986 7889999999998 9
Q ss_pred CCCchHH-------------HHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCCHHHHHHHHHHHHhhh
Q 017714 301 PQHGVGA-------------EICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQVLCFLYDSSIDGCYK 363 (367)
Q Consensus 301 ~~GGlg~-------------~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~~~~I~~~~i~~~l~~ 363 (367)
+.|||++ .|++.+.+. .+.++.++|. |.|+.++ +.|.+++++|++.|+.+ ++++|.+
T Consensus 789 v~ggLg~~~~p~va~~D~~~avae~i~~~----~p~~~~~LG~-D~FG~Sgtr~~Lr~~fglda~~Iv~a-al~~L~~ 860 (889)
T TIGR03186 789 VAQALGATQGPVIAATDYVRAVPELIRAY----VPRRYVTLGT-DGFGRSDTRAALRAFFEVDRASIVIA-ALQALAD 860 (889)
T ss_pred HhhhhCCCCCCeeeecchHHHHHHHHHhh----CCCCEEEecc-CCCCCcCCHHHHHHHhCCCHHHHHHH-HHHHHHh
Confidence 9999999 999999875 4679999999 8888764 67888999999999999 9998865
No 25
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=3.1e-46 Score=393.30 Aligned_cols=307 Identities=14% Similarity=0.118 Sum_probs=257.0
Q ss_pred cccccHHHHHHHHHHHHHhh---CCcEEEEecCCCCccccccc---------------------chhHHHHhCCCceeec
Q 017714 34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLDT 89 (367)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~---d~~vv~l~aDl~~~~g~~~~---------------------~~~~~~~~~p~R~i~~ 89 (367)
++++++|.||+++|.+|++. +++||.+++|++.++|.-++ ...|.++| |+||||+
T Consensus 492 ~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~ 570 (891)
T PRK09405 492 EREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQE 570 (891)
T ss_pred CCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEe
Confidence 47799999999999999996 99999999999987665111 13567889 9999999
Q ss_pred hhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCC-CCCC
Q 017714 90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAG-VGAQ 161 (367)
Q Consensus 90 GIaE~~~vg--~AaGlA~~----G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g-~G~t 161 (367)
||+||+|++ +|+|+|++ |++||+.+|++|.++|++|||++++|+ ++.+++++++. |.+.+ .|.|
T Consensus 571 GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~--------~~~~v~iggt~gg~tl~~eG~q 642 (891)
T PRK09405 571 GINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQ--------RARGFLLGGTAGRTTLNGEGLQ 642 (891)
T ss_pred chhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHh--------cCCCeEEEEECccccCCCCccc
Confidence 999999999 99999999 889999998666589999999999997 68898888764 56654 8999
Q ss_pred ch-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCC--cEEEeccccccCCCCCccccccCCCccccCCcE-E
Q 017714 162 HS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPD--PVVFLENELLYGESFPVSAEVLDSSFCLPIGKA-K 233 (367)
Q Consensus 162 H~-~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~--Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~-~ 233 (367)
|+ ..+.+++|.+||++|+.|+|+.|+..+++++++ ..+ |+|+|.... +.+. +.. .+++.+.+||. +
T Consensus 643 Hqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne----~~~~-~~~-pe~~~~~igKg~y 716 (891)
T PRK09405 643 HEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNE----NYHQ-PAM-PEGAEEGILKGMY 716 (891)
T ss_pred CCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCC----CCCC-CCC-CcccccccceEEE
Confidence 94 355689999999999999999999999999876 445 777875311 1111 111 13566788996 8
Q ss_pred EeeeCC------cEEEEEechhHHHHHHHHHHHHh-cCCceEEEEeeecCCCCHHHHHHHH---------hcCCeEEEEe
Q 017714 234 IEREGK------DVTITAFSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRSTINASV---------RKTNRLVTVE 297 (367)
Q Consensus 234 v~~~g~------di~Iia~G~~v~~al~Aa~~L~~-~Gi~v~vi~~~~i~P~d~~~l~~~~---------~~~~~ivvvE 297 (367)
++++|. |++|+++|.++++|++|+++|++ +||+++|+|++|+||||++.+.... ++++.|+++|
T Consensus 717 ~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~e 796 (891)
T PRK09405 717 KLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVL 796 (891)
T ss_pred EeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhh
Confidence 899876 89999999999999999999998 7999999999999999999987765 5677888888
Q ss_pred CCCCCCchH-------HHHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCCHHHHHHHHHHHHhhh
Q 017714 298 EGFPQHGVG-------AEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQVLCFLYDSSIDGCYK 363 (367)
Q Consensus 298 e~~~~GGlg-------~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~~~~I~~~~i~~~l~~ 363 (367)
+| .||++ +.|++.+.+. .+.++.++|+ |.|+.++ +.|.+++++|++.|+.+ ++++|.+
T Consensus 797 e~--~gG~~Vtv~D~~~aVae~la~~----~p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~a-al~~La~ 863 (891)
T PRK09405 797 KG--AEGPVVAATDYMKLFAEQIRAF----VPGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVA-ALKALAD 863 (891)
T ss_pred cc--cCCcEEEecchHHHHHHHHHHh----CCCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHH-HHHHHHh
Confidence 88 57888 8999999765 3679999999 7887654 57888899999999999 9999865
No 26
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=9.5e-47 Score=392.74 Aligned_cols=292 Identities=17% Similarity=0.131 Sum_probs=232.1
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCccccc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhc-cCCeeEE
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPVV 112 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~-~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~-~G~~p~~ 112 (367)
+++++|++++++|.++++++|+++++++|++.++.+. .-...|.++| |+||||+||+||+|+++|+|||+ .|++||+
T Consensus 353 ~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~ 431 (663)
T PRK12754 353 AKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYT 431 (663)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEE
Confidence 4678999999999999999999999999998766431 1125688889 99999999999999999999999 6889999
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCC-CCCCchhHH--HHHHhcCCCcEEEeeCCHHHHH
Q 017714 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQHSHCY--AAWYASVPGLKVLSPYSSEDAR 188 (367)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g-~G~tH~~~~--~a~~~~iP~~~V~~P~d~~e~~ 188 (367)
+|| ..|+.|++||||++ |+ +++||++++. +|.+.| +|+|| |+. .++||+|||++|+.|+|+.|+.
T Consensus 432 ~tf-~~F~~r~~~qir~~-a~--------~~l~V~~v~th~gi~~G~DG~TH-q~iEdla~lR~iPn~~V~~PaD~~E~~ 500 (663)
T PRK12754 432 STF-LMFVEYARNAVRMA-AL--------MKQRQVMVYTHDSIGLGEDGPTH-QPVEQVASLRVTPNMSTWRPCDQVESA 500 (663)
T ss_pred Eee-HHHHHHHHHHHHHH-HH--------cCCCeEEEEECCccccCCCCCCc-ccHHHHHHHhcCCCcEEecCCCHHHHH
Confidence 998 56778999999986 77 6899999876 577777 99999 544 4999999999999999999999
Q ss_pred HHHHHhHcC-CCcEEEeccccccCCCCCccccccC--C-CccccCCcEEEeeeCC---cEEEEEechhHHHHHHHHHHHH
Q 017714 189 GLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--S-SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEILA 261 (367)
Q Consensus 189 ~~~~~a~~~-~~Pv~ir~~~~~~~~~~~~~~~~~~--~-~~~~~~Gk~~v~~~g~---di~Iia~G~~v~~al~Aa~~L~ 261 (367)
.+++++++. ++|+|||.+|. +.| .++. + ...+..|+ ++++++. |++||++|+++++|++|++.|+
T Consensus 501 ~~~~~a~~~~~gP~yirl~R~----~~p---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~ 572 (663)
T PRK12754 501 VAWKYGVERQDGPTALILSRQ----NLA---QQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLT 572 (663)
T ss_pred HHHHHHHhCCCCCEEEEeCCC----CCC---CCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence 999999987 79999998765 222 1111 1 13455665 6778764 9999999999999999999999
Q ss_pred hcCCceEEEEeeecCCCCHHH--HHHHHhcC--CeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCC
Q 017714 262 KEGISAEVINLRSIRPLDRST--INASVRKT--NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 337 (367)
Q Consensus 262 ~~Gi~v~vi~~~~i~P~d~~~--l~~~~~~~--~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~ 337 (367)
++||+++|||++|++|||++. .++.+-.. ...|++|... ..||.. ++.. ..+ .||+ |.|+.+
T Consensus 573 ~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~-~~~w~~----~~~~------~~~--~igi-~~FG~S 638 (663)
T PRK12754 573 AEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI-ADYWYK----YVGL------NGA--IVGM-TTFGES 638 (663)
T ss_pred hhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc-ccchhh----hccC------CCC--EEEe-CCCCCC
Confidence 999999999999999999982 22222221 1348889864 334443 2221 122 3788 557654
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHh
Q 017714 338 --AANLERMAVPQVLCFLYDSSIDGC 361 (367)
Q Consensus 338 --~~~l~~~~~l~~~~I~~~~i~~~l 361 (367)
++.+.+++++|++.|+++ +++++
T Consensus 639 g~~~~l~~~~G~t~e~I~~~-~~~~~ 663 (663)
T PRK12754 639 APAELLFEEFGFTVDNVVAK-AKALL 663 (663)
T ss_pred CCHHHHHHHhCCCHHHHHHH-HHHhC
Confidence 356777889999999999 98764
No 27
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=6.2e-43 Score=369.76 Aligned_cols=300 Identities=16% Similarity=0.164 Sum_probs=238.6
Q ss_pred ccccccHHHHHHHHHHHHHhh---CCcEEEEecCCCCccccccc---------------------chhHHHHhCCCceee
Q 017714 33 AVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLD 88 (367)
Q Consensus 33 ~~~~~~~r~a~~~~L~~l~~~---d~~vv~l~aDl~~~~g~~~~---------------------~~~~~~~~~p~R~i~ 88 (367)
.+.++++|.||+++|.++++. +++||.+++|++.++|.-++ ...|.++| |+|||+
T Consensus 499 ~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie 577 (896)
T PRK13012 499 GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILE 577 (896)
T ss_pred CCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEe
Confidence 346799999999999999987 99999999999966543111 12456788 999999
Q ss_pred chhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCC-CCC
Q 017714 89 TPITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAG-VGA 160 (367)
Q Consensus 89 ~GIaE~~~vg--~AaGlA~~----G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g-~G~ 160 (367)
+||+||+|++ +|+|+|++ |++||+.+|+.|..+|++||+++++++ +..++++++++ |.+.| +|+
T Consensus 578 ~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~--------~~~~vlig~T~gg~tlg~dG~ 649 (896)
T PRK13012 578 EGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQ--------RARGFLLGATAGRTTLGGEGL 649 (896)
T ss_pred cchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhc--------ccCCeEEEEeCcccccCCCCC
Confidence 9999999999 99999887 779999998666589999999999885 46678888764 55555 999
Q ss_pred Cchh-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C--CCcEEEeccccccCCCCCccccccCC-CccccCCcE
Q 017714 161 QHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D--PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA 232 (367)
Q Consensus 161 tH~~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~--~~Pv~ir~~~~~~~~~~~~~~~~~~~-~~~~~~Gk~ 232 (367)
||+. .+.+++|.+||++|+.|+|+.|+..+++.+++ . +.|+|||..|..+.+ +.++++ +..+..|++
T Consensus 650 THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~-----p~~~~~~~~~i~kG~y 724 (896)
T PRK13012 650 QHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQ-----PALPEGAEEGILKGMY 724 (896)
T ss_pred CCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCC-----CCCCccchhccccCcE
Confidence 9942 34489999999999999999999999999873 2 679999977653321 122222 345667774
Q ss_pred EEe--eeCCcEEEEEechhHHHHHHHHHHHHhc-CCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchH---
Q 017714 233 KIE--REGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG--- 306 (367)
Q Consensus 233 ~v~--~~g~di~Iia~G~~v~~al~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg--- 306 (367)
.+. +++.|++|+++|+++++|++|+++|+++ ||+++|+|++|++|||++.+.. |+|+..||++
T Consensus 725 ~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~~ 793 (896)
T PRK13012 725 RLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEAR 793 (896)
T ss_pred EEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCcccc
Confidence 443 3466999999999999999999999999 9999999999999999997732 5555555555
Q ss_pred -H---------------------HHHHHHHHhccCCCCCCeEEEecCCCCCCCH--HHHHHHhCCCHHHHHHHHHHHHhh
Q 017714 307 -A---------------------EICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQVLCFLYDSSIDGCY 362 (367)
Q Consensus 307 -~---------------------~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~~l~~~~I~~~~i~~~l~ 362 (367)
+ .|++.+.+. .+.++.++|+ |.|+.++ +.|.+++++|++.|+.+ ++++|.
T Consensus 794 ~sy~~~~l~~~~~p~Va~~D~~~aVae~l~~~----~~~~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~a-al~~La 867 (896)
T PRK13012 794 VPYVTQCLAGTRGPVVAATDYVRAVPEQIRAF----VPARYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLA-ALKALA 867 (896)
T ss_pred ccHHHHhhcccCCCeEEecchHHHHHHHHHHh----CCCCeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHH-HHHHHH
Confidence 3 566666553 3568899999 6787653 67888999999999999 999886
Q ss_pred h
Q 017714 363 K 363 (367)
Q Consensus 363 ~ 363 (367)
+
T Consensus 868 ~ 868 (896)
T PRK13012 868 D 868 (896)
T ss_pred h
Confidence 5
No 28
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=5.6e-42 Score=301.30 Aligned_cols=166 Identities=58% Similarity=1.028 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeeEEecccccH
Q 017714 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119 (367)
Q Consensus 41 ~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~-R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f 119 (367)
++++++|.+++++||+++++++|++..+|++..+++|+++| |+ ||||+||+||+|+|+|+|||++|++||+++.++.|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 37899999999999999999999987677777778999999 88 99999999999999999999999999999545788
Q ss_pred HHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCC
Q 017714 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD 199 (367)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~ 199 (367)
++|++|||++++|+++|++||+.++||++++++|...++|+||+++++++||++|||+|++|+|+.|++.+++++++.++
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~ 159 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDD 159 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999998655556899999999999999999999999999999999999999999
Q ss_pred cEEEeccc
Q 017714 200 PVVFLENE 207 (367)
Q Consensus 200 Pv~ir~~~ 207 (367)
|+++++||
T Consensus 160 P~~~~e~k 167 (167)
T cd07036 160 PVIFLEHK 167 (167)
T ss_pred cEEEEecC
Confidence 99999874
No 29
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=1e-36 Score=265.75 Aligned_cols=153 Identities=29% Similarity=0.481 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHH
Q 017714 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120 (367)
Q Consensus 41 ~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~ 120 (367)
++++++|.+++++||+++++++|++.+++ +++|.++| |+||+|+||+|++|+++|+|+|+.|++||++++ ++|+
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~~----~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~f~ 74 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTF-SFFL 74 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEEC-HHHH
Confidence 37899999999999999999999986543 37899999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCC-CCCCch-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC
Q 017714 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAG-VGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD 197 (367)
Q Consensus 121 ~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g-~G~tH~-~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~ 197 (367)
+|++|||++++|+ +++||++++++ |...| +|+||+ ++++++++++||++|++|+|++|++.+++++++.
T Consensus 75 ~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~ 146 (156)
T cd07033 75 QRAYDQIRHDVAL--------QNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY 146 (156)
T ss_pred HHHHHHHHHHHhc--------cCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence 9999999999997 58999999875 56554 899994 4677999999999999999999999999999999
Q ss_pred CCcEEEeccc
Q 017714 198 PDPVVFLENE 207 (367)
Q Consensus 198 ~~Pv~ir~~~ 207 (367)
++|+|+|++|
T Consensus 147 ~~P~~irl~~ 156 (156)
T cd07033 147 DGPVYIRLPR 156 (156)
T ss_pred CCCEEEEeeC
Confidence 9999999753
No 30
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.2e-35 Score=311.72 Aligned_cols=293 Identities=19% Similarity=0.198 Sum_probs=237.5
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCC--------------cccccccchhHHHHhCCCceeechhhHHHHHHHH
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~--------------~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~A 100 (367)
+.++|.+|...++.+++++|++|+++++|++. .+|+|+.+++|.++|++.|++|++|+|.+++|++
T Consensus 584 ~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~ 663 (929)
T TIGR00239 584 KLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFE 663 (929)
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHH
Confidence 34899999999999999999999999999987 5666789999999999999999999999999999
Q ss_pred HHHhccCCee--EEecccccHHH---HHHHHHHHH-HhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHH--hc
Q 017714 101 VGAAYYGLKP--VVEFMTFNFSM---QAIDHIINS-AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWY--AS 172 (367)
Q Consensus 101 aGlA~~G~~p--~~~~~~~~f~~---ra~dqi~~~-~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~--~~ 172 (367)
.|+|+.|.+| +++.++.+|+. .++|||.+. .+++++|+ ++|++.++|...+.+.+||+..|++| .+
T Consensus 664 ~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~lql~~ 737 (929)
T TIGR00239 664 YGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMS------GLVMLLPHGYEGQGPEHSSGRLERFLQLAA 737 (929)
T ss_pred HhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCCchhhccCHHHHHHHhC
Confidence 9999999877 59999999987 779999888 57776654 49999998855445566778999999 88
Q ss_pred CCCcEEEeeCCHHHHHHHHH-HhHcC-CCcEEEeccccccCCCCCc--cccccCCCccccCCcEE-----EeeeCCcEEE
Q 017714 173 VPGLKVLSPYSSEDARGLLK-AAIRD-PDPVVFLENELLYGESFPV--SAEVLDSSFCLPIGKAK-----IEREGKDVTI 243 (367)
Q Consensus 173 iP~~~V~~P~d~~e~~~~~~-~a~~~-~~Pv~ir~~~~~~~~~~~~--~~~~~~~~~~~~~Gk~~-----v~~~g~di~I 243 (367)
.|||+|+.|++|.|++.+|+ ++++. ++|++++++|.+|+.+..+ ..+++++.|..+++... +.+++.+.+|
T Consensus 738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv 817 (929)
T TIGR00239 738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLV 817 (929)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccccccccccCccCCcEEE
Confidence 99999999999999999999 79996 9999999999998753211 12445555665564321 2233445555
Q ss_pred EEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC---eEEEEeCCCCCCchHHHHHHHHHHhccCC
Q 017714 244 TAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEESFGY 320 (367)
Q Consensus 244 ia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~---~ivvvEe~~~~GGlg~~v~~~l~~~~~~~ 320 (367)
+++| ++..++++ +.++++|+++.|||+++|+|||.++|.++++|+. ++|+++|...+.|-...|...+.+...
T Consensus 818 ~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~-- 893 (929)
T TIGR00239 818 LCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIP-- 893 (929)
T ss_pred EECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhc--
Confidence 5555 77778877 6677789999999999999999999999999996 788888888788877888877764311
Q ss_pred CCCCeEEEecCCCCCCC
Q 017714 321 LDAPVERIAGADVPMPY 337 (367)
Q Consensus 321 ~~~~v~~ig~~d~~~~~ 337 (367)
...++..+|.+....|.
T Consensus 894 ~~~~l~y~gR~~~aspA 910 (929)
T TIGR00239 894 EGVSVRYAGRPASASPA 910 (929)
T ss_pred cCCceEEeCCCCCCCCC
Confidence 12368888888766654
No 31
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=3.9e-35 Score=312.35 Aligned_cols=292 Identities=19% Similarity=0.181 Sum_probs=241.7
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCC--------------cccccccchhHHHHhCCCceeechhhHHHHHHHH
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~--------------~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~A 100 (367)
+.++|..|...++..++++|++|++.++|++. .+|+|+.++++.++||++|++|++|+|.+++|++
T Consensus 582 ~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~ 661 (924)
T PRK09404 582 KPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFE 661 (924)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHH
Confidence 45789999999999999999999999999985 6789999999999999999999999999999999
Q ss_pred HHHhccCCee--EEecccccHHH---HHHHHHHHHH-hhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcC-
Q 017714 101 VGAAYYGLKP--VVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV- 173 (367)
Q Consensus 101 aGlA~~G~~p--~~~~~~~~f~~---ra~dqi~~~~-a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~i- 173 (367)
.|+|+.|.+| +++.++.+|+. .++||+.+.. +++++| .++|++.++|...+.+.+||+..|++|.+.
T Consensus 662 ~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~------sglv~~~p~G~~g~g~~hsS~~~E~~l~~~~ 735 (924)
T PRK09404 662 YGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRL------SGLVMLLPHGYEGQGPEHSSARLERFLQLCA 735 (924)
T ss_pred HHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCc------cCeEEEecCcCCCCChhhhccCHHHHHHhCC
Confidence 9999999975 99999999987 6799999886 776654 459999998854334455667999999665
Q ss_pred -CCcEEEeeCCHHHHHHHHHHhH-cC-CCcEEEeccccccCCCCCc--cccccCCCccccCCcEEEeeeCCcE--EEEEe
Q 017714 174 -PGLKVLSPYSSEDARGLLKAAI-RD-PDPVVFLENELLYGESFPV--SAEVLDSSFCLPIGKAKIEREGKDV--TITAF 246 (367)
Q Consensus 174 -P~~~V~~P~d~~e~~~~~~~a~-~~-~~Pv~ir~~~~~~~~~~~~--~~~~~~~~~~~~~Gk~~v~~~g~di--~Iia~ 246 (367)
|||+|+.|++|.|++.+|+.++ +. ++|++++++|.+|+.+..+ ..++++..|..++++.. .++++|+ +||||
T Consensus 736 ~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~ 814 (924)
T PRK09404 736 EDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCS 814 (924)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEEEc
Confidence 6999999999999999999864 66 5999999999998753211 12333334554556554 5678889 79999
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC---eEEEEeCCCCCCchHHHHHHHHHHhccCCCCC
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEESFGYLDA 323 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~---~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~ 323 (367)
|.+++.+++|++++.. .++.|||+++|+|||.++|.++++|++ ++|+++|...+.|.+..|...+.+... ...
T Consensus 815 Gk~~~~~~~a~~~~~~--~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~~--~~~ 890 (924)
T PRK09404 815 GKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVLP--EGQ 890 (924)
T ss_pred CHHHHHHHHHHHhCCC--CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHhc--cCC
Confidence 9999999999886543 499999999999999999999999974 899999999999999999888864311 124
Q ss_pred CeEEEecCCCCCCC
Q 017714 324 PVERIAGADVPMPY 337 (367)
Q Consensus 324 ~v~~ig~~d~~~~~ 337 (367)
++..+|.+....|.
T Consensus 891 ~~~y~gR~~~aspA 904 (924)
T PRK09404 891 KLRYAGRPASASPA 904 (924)
T ss_pred eeEEECCCCcCCCC
Confidence 68888988766664
No 32
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=290.27 Aligned_cols=299 Identities=19% Similarity=0.195 Sum_probs=235.5
Q ss_pred cccccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCccccc-ccchhHH-HHhCCCceeechhhHHHHHHHHHHHhccC
Q 017714 30 YSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLL-EKYGPERVLDTPITEAGFTGIGVGAAYYG 107 (367)
Q Consensus 30 ~~~~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~-~~~~~~~-~~~~p~R~i~~GIaE~~~vg~AaGlA~~G 107 (367)
+...++.+.+|++.+++|..+....|+++..+|||+.|+.+. +-...|. +.| ++|+|.+||+|++|.+++.|||++|
T Consensus 347 ~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhG 425 (663)
T COG0021 347 FEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHG 425 (663)
T ss_pred hcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHhc
Confidence 333334489999999999999999999999999999887663 2122343 567 8999999999999999999999996
Q ss_pred -CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCC-CCCCchhHHH--HHHhcCCCcEEEeeC
Q 017714 108 -LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQHSHCYA--AWYASVPGLKVLSPY 182 (367)
Q Consensus 108 -~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g-~G~tH~~~~~--a~~~~iP~~~V~~P~ 182 (367)
++||..|| ..|+.++..++|+.+ + +++|++++.+ |++..| ||||| |+.| +.+|.|||+.|+.|+
T Consensus 426 g~~pyggTF-lvFsdY~r~AiRlaA-L--------m~l~~~~V~THDSIgvGEDGPTH-qPiEqLa~LRaiPN~~V~RPa 494 (663)
T COG0021 426 GFIPYGGTF-LVFSDYARPAVRLAA-L--------MGLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLSVIRPA 494 (663)
T ss_pred Cceeeccee-hhhHhhhhHHHHHHH-h--------cCCCeEEEEecCceecCCCCCCC-CcHHHHHHhhccCCceeEecC
Confidence 59999998 567999999999865 4 6999999976 677777 99999 7776 999999999999999
Q ss_pred CHHHHHHHHHHhHcC-CCcEEEeccccccCCCCCccccccCCCccccCCcEEEeee----CCcEEEEEechhHHHHHHHH
Q 017714 183 SSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIERE----GKDVTITAFSKIVGLSLKAA 257 (367)
Q Consensus 183 d~~e~~~~~~~a~~~-~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~----g~di~Iia~G~~v~~al~Aa 257 (367)
|+.|+..+++.|++. ++|+++..+|. +.|. ++..+.......++++++ +.|++||++|+.|+.|++|+
T Consensus 495 D~~Et~~aw~~Al~~~~gPt~LiltRQ----nlp~---l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa 567 (663)
T COG0021 495 DANETAAAWKYALERKDGPTALILTRQ----NLPV---LERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAA 567 (663)
T ss_pred ChHHHHHHHHHHHhcCCCCeEEEEecC----CCCc---cCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHH
Confidence 999999999999995 89999987765 4333 222222222334666665 57999999999999999999
Q ss_pred HHHHhcCCceEEEEeeecCCCCHHHH--HHHHhcC--CeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCC
Q 017714 258 EILAKEGISAEVINLRSIRPLDRSTI--NASVRKT--NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV 333 (367)
Q Consensus 258 ~~L~~~Gi~v~vi~~~~i~P~d~~~l--~~~~~~~--~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~ 333 (367)
++|+++|++++||+++|...|+.+.- ++++-.. ...|.+|-... .||...+ ...-..||+. .
T Consensus 568 ~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~-~~W~ky~------------g~~g~~ig~~-~ 633 (663)
T COG0021 568 KELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSA-LGWYKYV------------GLDGAVIGMD-S 633 (663)
T ss_pred HHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccc-cchhhhc------------CCCCcEEeec-c
Confidence 99998999999999999999988642 2333332 23577888764 4565432 1123467885 4
Q ss_pred CCCC--HHHHHHHhCCCHHHHHHHHHHHHhh
Q 017714 334 PMPY--AANLERMAVPQVLCFLYDSSIDGCY 362 (367)
Q Consensus 334 ~~~~--~~~l~~~~~l~~~~I~~~~i~~~l~ 362 (367)
|+.+ ++.+.+.+++|+|.|+++ ++++|.
T Consensus 634 FG~Sap~~~l~~~fGft~e~vv~~-~~~~l~ 663 (663)
T COG0021 634 FGASAPGDELFKEFGFTVENVVAK-AKSLLN 663 (663)
T ss_pred CcCCCCHHHHHHHhCCCHHHHHHH-HHHhhC
Confidence 5544 467777889999999999 998763
No 33
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=2.4e-34 Score=256.22 Aligned_cols=166 Identities=35% Similarity=0.574 Sum_probs=132.0
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC--CeeEE
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG--LKPVV 112 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G--~~p~~ 112 (367)
+|+++|++++++|.+++++||+|+++++|++ +|++..+.+....++|+||+|+||+|++|+++|+|||++| ++||+
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~--~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~ 78 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLG--GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVE 78 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH--HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcC--cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeE
Confidence 4689999999999999999999999999998 3444444455556667899999999999999999999999 56666
Q ss_pred ecccccHHH----HHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC-CCCCCc-hhHHHHHHhcCCCcEEEeeCCHHH
Q 017714 113 EFMTFNFSM----QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA-GVGAQH-SHCYAAWYASVPGLKVLSPYSSED 186 (367)
Q Consensus 113 ~~~~~~f~~----ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~-g~G~tH-~~~~~a~~~~iP~~~V~~P~d~~e 186 (367)
.+| +.|+. |+++|++++.++. +.|+.+....|... ++|+|| +++++++|+++|||+|++|+|+.|
T Consensus 79 ~~f-~~F~~~~q~r~~~~~~~~~~~~--------~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e 149 (178)
T PF02779_consen 79 STF-ADFLTPAQIRAFDQIRNDMAYG--------QLPVPVGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAE 149 (178)
T ss_dssp EEE-GGGGGGGHHHHHHHHHHHHHHH--------TS-EEEEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHH
T ss_pred eec-cccccccchhhhhhhhhhhhcc--------cceecceeecCcccccccccccccccccccccccccccccCCCHHH
Confidence 665 66666 9999999999874 45554332334433 477777 478889999999999999999999
Q ss_pred HHHHHHHhHc--CCCcEEEeccccccC
Q 017714 187 ARGLLKAAIR--DPDPVVFLENELLYG 211 (367)
Q Consensus 187 ~~~~~~~a~~--~~~Pv~ir~~~~~~~ 211 (367)
++.+++++++ .++|+|||++|.+|+
T Consensus 150 ~~~~l~~a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 150 AKGLLRAAIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHHHHHHHHSSSSSEEEEEEESSEES
T ss_pred HHHHHHHHHHhCCCCeEEEEeeHHhCC
Confidence 9999999999 789999999988664
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=3.7e-30 Score=226.98 Aligned_cols=155 Identities=37% Similarity=0.564 Sum_probs=130.0
Q ss_pred cHHHHHHHHHHHHHhhCC-cEEEEecCCCCcccccccchhHHHHhCCC-------ceeechhhHHHHHHHHHHHhccCCe
Q 017714 38 MVREALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK 109 (367)
Q Consensus 38 ~~r~a~~~~L~~l~~~d~-~vv~l~aDl~~~~g~~~~~~~~~~~~~p~-------R~i~~GIaE~~~vg~AaGlA~~G~~ 109 (367)
+++++++++|.+++++|+ +++++++|++.++++. ..+.| |+ ||+|+||+|++|+++|+|+|++|++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~ 74 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLD-----RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLR 74 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCC-----cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCC
Confidence 478999999999999955 9999999997654331 13445 44 5999999999999999999999999
Q ss_pred eEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCC-CCCCc-hhHHHHHHhcCCCcEEEeeCCHHHH
Q 017714 110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VGAQH-SHCYAAWYASVPGLKVLSPYSSEDA 187 (367)
Q Consensus 110 p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~G~tH-~~~~~a~~~~iP~~~V~~P~d~~e~ 187 (367)
||++++++ |+.|++||+++++++ .++|+++..+.|...| +|+|| +++++++++++||++|++|+|++|+
T Consensus 75 pi~~~~~~-f~~~a~~~~~~~~~~--------~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 75 PVVAIFFT-FFDRAKDQIRSDGAM--------GRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred cEEEeeHH-HHHHHHHHHHHhCcc--------cCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 99999855 556999999999874 3688888876555555 79876 4677899999999999999999999
Q ss_pred HHHHHHhHcC-CCcEEEeccc
Q 017714 188 RGLLKAAIRD-PDPVVFLENE 207 (367)
Q Consensus 188 ~~~~~~a~~~-~~Pv~ir~~~ 207 (367)
+.+++++++. ++|+|||.++
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~~ 166 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLER 166 (168)
T ss_pred HHHHHHHHhCCCCCEEEEecC
Confidence 9999999976 6899998653
No 35
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.92 E-value=1.3e-22 Score=198.59 Aligned_cols=288 Identities=17% Similarity=0.122 Sum_probs=194.6
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~ 116 (367)
++-.+|++..... .+.+++..-+ ...++...-....+.+++ ...|++ ..+|.+++++|.|+|.+|.|.++.|+
T Consensus 7 ~~GNeAiA~ga~~---ag~~~~a~YP-iTPsTeI~e~la~~~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTS- 79 (352)
T PRK07119 7 MKGNEAIAEAAIR---AGCRCYFGYP-ITPQSEIPEYMSRRLPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTSSS- 79 (352)
T ss_pred ehHHHHHHHHHHH---hCCCEEEEeC-CCCchHHHHHHHHHHHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecC-
Confidence 4566777766543 4677777655 223333321112233345 467888 69999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCCCCCCCc-hhHHHHHHhc-----CCCcEEEeeCCHHHHH
Q 017714 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGVGAQH-SHCYAAWYAS-----VPGLKVLSPYSSEDAR 188 (367)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~g~G~tH-~~~~~a~~~~-----iP~~~V~~P~d~~e~~ 188 (367)
+..+..++++|-.... ..+|++++.. +|++.| .++ .|.|.-+... .-++.+++|+|+||++
T Consensus 80 g~Gl~lm~E~l~~a~~---------~e~P~v~v~v~R~~p~~g--~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~ 148 (352)
T PRK07119 80 SPGISLKQEGISYLAG---------AELPCVIVNIMRGGPGLG--NIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMV 148 (352)
T ss_pred cchHHHHHHHHHHHHH---------ccCCEEEEEeccCCCCCC--CCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHH
Confidence 4556678888754332 6899888764 345444 344 2444422221 4469999999999999
Q ss_pred HHHHHhHc----CCCcEEEeccccccCCCCCc--cc--c--ccCCCcccc------------------------------
Q 017714 189 GLLKAAIR----DPDPVVFLENELLYGESFPV--SA--E--VLDSSFCLP------------------------------ 228 (367)
Q Consensus 189 ~~~~~a~~----~~~Pv~ir~~~~~~~~~~~~--~~--~--~~~~~~~~~------------------------------ 228 (367)
++..+|++ +.-||+++.+..+-+...++ .+ . .+.+++.++
T Consensus 149 d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 228 (352)
T PRK07119 149 DLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEK 228 (352)
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHH
Confidence 99999987 46899999764321111000 00 0 000000000
Q ss_pred C-------CcEEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 229 I-------GKAKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 229 ~-------Gk~~v~-~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
. ...+.. .+++|++||++|+++..+++|++.|+++|+++++++++++||||.+.|.++++++++|+|+|++
T Consensus 229 ~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n- 307 (352)
T PRK07119 229 YAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS- 307 (352)
T ss_pred HHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC-
Confidence 0 001111 1468999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhh
Q 017714 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCY 362 (367)
Q Consensus 301 ~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~~~~i~~~l~ 362 (367)
.|-|..+|...+.. ..++..++.-+ ...+++++|.+. ++++++
T Consensus 308 -~g~l~~ei~~~~~~------~~~~~~i~k~~-----------G~~~~~~~i~~~-~~~~~~ 350 (352)
T PRK07119 308 -MGQMVEDVRLAVNG------KKPVEFYGRMG-----------GMVPTPEEILEK-IKEILG 350 (352)
T ss_pred -ccHHHHHHHHHhCC------CCceeEEeccC-----------CEeCCHHHHHHH-HHHHhc
Confidence 36677777755421 12344444432 124689999999 988874
No 36
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.92 E-value=4.7e-23 Score=214.98 Aligned_cols=288 Identities=15% Similarity=0.138 Sum_probs=198.8
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCC--CceeechhhHHHHHHHHHHHhccCCeeEEec
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP--ERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p--~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 114 (367)
++-.+|++.+... .+.+++..-+ ...++.. .+.+.+.. + +-++....+|.+++.+|+|+|.+|.|.+++|
T Consensus 5 ~~GneA~A~g~~~---ag~~~~~~YP-iTP~t~i---~e~l~~~~-~~~~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~t 76 (595)
T TIGR03336 5 LLGNEAIARGALE---AGVGVAAAYP-GTPSSEI---TDTLAKVA-KRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFCTM 76 (595)
T ss_pred ecHHHHHHHHHHH---cCCEEEEecC-CCCHHHH---HHHHHHhh-hhccEEEEECcCHHHHHHHHHHHHhcCcceEEEc
Confidence 5667788877764 4556665443 1122222 23333332 3 3456677899999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCch-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~-~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
. +..+..+.|++-. ++++ ..++|+|++..++++ .++++. |.|. ++....++.|+.|+|+||++++..+
T Consensus 77 s-~~Gl~~~~e~l~~-~~~~------g~~~~iV~~~~~~~g--p~~~~~~q~d~-~~~~~~~~~vl~p~~~qE~~d~~~~ 145 (595)
T TIGR03336 77 K-HVGLNVAADPLMT-LAYT------GVKGGLVVVVADDPS--MHSSQNEQDTR-HYAKFAKIPCLEPSTPQEAKDMVKY 145 (595)
T ss_pred c-CCchhhhHHHhhh-hhhh------cCcCceEEEEccCCC--CccchhhHhHH-HHHHhcCCeEECCCCHHHHHHHHHH
Confidence 7 5566788899855 4432 258899998766532 235543 3433 3333457889999999999999999
Q ss_pred hHc----CCCcEEEeccccccCCCCCc-------cccc--cC---CCccc-c--------------------CCc--EE-
Q 017714 194 AIR----DPDPVVFLENELLYGESFPV-------SAEV--LD---SSFCL-P--------------------IGK--AK- 233 (367)
Q Consensus 194 a~~----~~~Pv~ir~~~~~~~~~~~~-------~~~~--~~---~~~~~-~--------------------~Gk--~~- 233 (367)
|++ +..||+++.+..+-+..-++ .+.. +. +.+.. + ... +.
T Consensus 146 Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (595)
T TIGR03336 146 AFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNR 225 (595)
T ss_pred HHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 987 57899999764322111000 0000 00 00000 0 000 11
Q ss_pred EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHH
Q 017714 234 IEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 234 v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
+..+++|++||++|++++.+++|+++| |++++|++++++||||++.|.++++++++|+|+|||. +++++.+...+
T Consensus 226 ~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvEe~~--~~~~~~~~~~~ 300 (595)
T TIGR03336 226 LEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVEELE--PVVEEQVKALA 300 (595)
T ss_pred eccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEeCCc--cHHHHHHHHHH
Confidence 223468999999999999999987765 9999999999999999999999999999999999997 55555555444
Q ss_pred HHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 017714 314 IEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDG 360 (367)
Q Consensus 314 ~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~~~~i~~~ 360 (367)
.+. ..++.++|++|.|++. ..+||++.|.++ ++++
T Consensus 301 ~~~-----~~~v~~~G~~d~fi~~------~~~Ld~~~i~~~-i~~~ 335 (595)
T TIGR03336 301 GTA-----GLNIKVHGKEDGFLPR------EGELNPDIVVNA-LAKF 335 (595)
T ss_pred Hhc-----CCCeEEecccCCccCc------ccCcCHHHHHHH-HHHh
Confidence 332 2378999999999883 467999999999 8775
No 37
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.91 E-value=7.6e-26 Score=189.75 Aligned_cols=123 Identities=41% Similarity=0.599 Sum_probs=112.3
Q ss_pred CcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHH
Q 017714 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309 (367)
Q Consensus 230 Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v 309 (367)
||+.++++|+|++|||||++++.|++|++.|+++|++++|+|++|++|||++.|.++++++++++|+|||+..||+|+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCCCCH-HHHHHHhCCCHHHH
Q 017714 310 CASVIEESFGYLDAPVERIAGADVPMPYA-ANLERMAVPQVLCF 352 (367)
Q Consensus 310 ~~~l~~~~~~~~~~~v~~ig~~d~~~~~~-~~l~~~~~l~~~~I 352 (367)
++.+.++++..+..++.++|.+|.|+|++ ..+.+++++|+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHGRAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSSHHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCcHHHHHHHCcCCCCcC
Confidence 99999876533347899999999999875 56777889999987
No 38
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.90 E-value=1.2e-21 Score=193.11 Aligned_cols=285 Identities=19% Similarity=0.175 Sum_probs=190.7
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE---KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~---~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~ 113 (367)
++-.+|++..... ...+++..-+ ...++... +.+.+ ++ ...|+++- +|.+++++|.|+|.+|.|.++.
T Consensus 7 ~~GNeAiA~ga~~---ag~~~~a~YP-ITPsTei~---e~la~~~~~~-~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~Ta 77 (376)
T PRK08659 7 LQGNEACAEGAIA---AGCRFFAGYP-ITPSTEIA---EVMARELPKV-GGVFIQME-DEIASMAAVIGASWAGAKAMTA 77 (376)
T ss_pred eehHHHHHHHHHH---hCCCEEEEcC-CCChHHHH---HHHHHhhhhh-CCEEEEeC-chHHHHHHHHhHHhhCCCeEee
Confidence 5667777776543 4566666554 22233221 22332 33 25688875 9999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCCCCCCCchhHHH--HHHhc--CCCcEEEeeCCHHHH
Q 017714 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGVGAQHSHCYA--AWYAS--VPGLKVLSPYSSEDA 187 (367)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~g~G~tH~~~~~--a~~~~--iP~~~V~~P~d~~e~ 187 (367)
|+.+.| ....+++-...+ .++|+|++.. .|+++|....++|.|. ..+.. .-++.|++|+|+||+
T Consensus 78 TSg~Gl-~lm~E~~~~a~~---------~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa 147 (376)
T PRK08659 78 TSGPGF-SLMQENIGYAAM---------TETPCVIVNVQRGGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQEC 147 (376)
T ss_pred cCCCcH-HHHHHHHHHHHH---------cCCCEEEEEeecCCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHH
Confidence 986554 567788865554 5899999864 3666665445556665 33221 235789999999999
Q ss_pred HHHHHHhHc----CCCcEEEeccccccCCCCCc----cccc-------cC------CCcc-----cc----CC-------
Q 017714 188 RGLLKAAIR----DPDPVVFLENELLYGESFPV----SAEV-------LD------SSFC-----LP----IG------- 230 (367)
Q Consensus 188 ~~~~~~a~~----~~~Pv~ir~~~~~~~~~~~~----~~~~-------~~------~~~~-----~~----~G------- 230 (367)
+++...|++ ++.||+++.+..+-+...++ ...+ +. .+|. ++ .|
T Consensus 148 ~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (376)
T PRK08659 148 FDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHV 227 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCccccCCCCCCCCCCCCCccCCCCCeEEe
Confidence 999999986 47899999653221110000 0000 00 0000 00 01
Q ss_pred -------------------------------------cEEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEe
Q 017714 231 -------------------------------------KAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (367)
Q Consensus 231 -------------------------------------k~~v~~-~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~ 272 (367)
..+... +++|++||++|+++..+++|++.|+++|++++++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~ 307 (376)
T PRK08659 228 TGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRL 307 (376)
T ss_pred CCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceEEEEe
Confidence 011112 478999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHH
Q 017714 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCF 352 (367)
Q Consensus 273 ~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I 352 (367)
++++|||.+.|.+.+++.++|+|||+| .|.+..++...+.. ..++..++.-+ ...+++++|
T Consensus 308 ~~l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~------~~~~~~i~~~~-----------G~~~~~~ei 368 (376)
T PRK08659 308 ITVWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNG------RAKVEGINKIG-----------GELITPEEI 368 (376)
T ss_pred CeecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCC------CCCeeEEeccC-----------CCcCCHHHH
Confidence 999999999999999999999999998 36666666555421 11233333322 113688888
Q ss_pred HHHHHHHH
Q 017714 353 LYDSSIDG 360 (367)
Q Consensus 353 ~~~~i~~~ 360 (367)
.+. ++++
T Consensus 369 ~~~-~~~~ 375 (376)
T PRK08659 369 LEK-IKEV 375 (376)
T ss_pred HHH-HHhh
Confidence 888 7764
No 39
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.90 E-value=2.3e-21 Score=190.74 Aligned_cols=283 Identities=16% Similarity=0.110 Sum_probs=192.1
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE---KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~---~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~ 113 (367)
++-.+|++..... .+.+++..-+ ...++.. .+.+.+ ++ ...|+++ .+|.+++++|+|+|.+|.|.+++
T Consensus 6 ~~GNeAiA~ga~~---ag~~~~a~YP-ITPsTeI---~e~la~~~~~~-g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~ta 76 (375)
T PRK09627 6 STGNELVAKAAIE---CGCRFFGGYP-ITPSSEI---AHEMSVLLPKC-GGTFIQM-EDEISGISVALGASMSGVKSMTA 76 (375)
T ss_pred echHHHHHHHHHH---hCCCEEEEeC-CCChhHH---HHHHHHHHHHc-CCEEEEc-CCHHHHHHHHHHHHhhCCCEEee
Confidence 4566777776543 5677777654 2233332 122333 33 3456777 79999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCCCCCCCchhHHHHHHh-----cCCCcEEEeeCCHHH
Q 017714 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGVGAQHSHCYAAWYA-----SVPGLKVLSPYSSED 186 (367)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~g~G~tH~~~~~a~~~-----~iP~~~V~~P~d~~e 186 (367)
|+.+.|+ ...|++-...+ .++|+|++.. .|+++|......|.|....+ -.| +.|++|+|+||
T Consensus 77 TSg~G~~-lm~E~~~~a~~---------~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~hgd~~-~ivl~p~~~qE 145 (375)
T PRK09627 77 SSGPGIS-LKAEQIGLGFI---------AEIPLVIVNVMRGGPSTGLPTRVAQGDVNQAKNPTHGDFK-SIALAPGSLEE 145 (375)
T ss_pred cCCchHH-HHhhHHHHHHh---------ccCCEEEEEeccCCCcCCCCCccchHHHHHHhcCCCCCcC-cEEEeCCCHHH
Confidence 9866554 56688765443 6899999865 37877754444456642222 244 55999999999
Q ss_pred HHHHHHHhHc----CCCcEEEeccccccCCCCCc--c--ccc---------cC---C---Cccc----c-----------
Q 017714 187 ARGLLKAAIR----DPDPVVFLENELLYGESFPV--S--AEV---------LD---S---SFCL----P----------- 228 (367)
Q Consensus 187 ~~~~~~~a~~----~~~Pv~ir~~~~~~~~~~~~--~--~~~---------~~---~---~~~~----~----------- 228 (367)
++++..+|++ +..||+++.+..+-+...++ . ..+ +. + .+.+ |
T Consensus 146 a~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 225 (375)
T PRK09627 146 AYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYR 225 (375)
T ss_pred HHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccCCCCCcccCCCCCCce
Confidence 9999999987 57899999764221110000 0 000 00 0 0000 0
Q ss_pred --------------------------------------CCcEEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCceEE
Q 017714 229 --------------------------------------IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (367)
Q Consensus 229 --------------------------------------~Gk~~v~~-~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~v 269 (367)
...++... +++|++||+||++...+++|++.|+++|+++++
T Consensus 226 ~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~ 305 (375)
T PRK09627 226 YHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGL 305 (375)
T ss_pred EEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEE
Confidence 00011111 357899999999999999999999999999999
Q ss_pred EEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCH
Q 017714 270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV 349 (367)
Q Consensus 270 i~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~ 349 (367)
+.+++++|||.+.|++.+++.++|+|+|++. |.|..+|...+.. .++..++.-+ ...+++
T Consensus 306 l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~-------~~~~~i~~~~-----------G~~~~~ 365 (375)
T PRK09627 306 FRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQR-------DDFHFLGKAN-----------GRPISP 365 (375)
T ss_pred EEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCC-------CCceEEeeeC-----------CCcCCH
Confidence 9999999999999999999999999999986 7888887766621 1222332211 013688
Q ss_pred HHHHHHHHHHH
Q 017714 350 LCFLYDSSIDG 360 (367)
Q Consensus 350 ~~I~~~~i~~~ 360 (367)
++|.++ ++++
T Consensus 366 ~~i~~~-i~~~ 375 (375)
T PRK09627 366 SEIIAK-VKEL 375 (375)
T ss_pred HHHHHH-HHhC
Confidence 888888 7764
No 40
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.88 E-value=8.3e-20 Score=182.04 Aligned_cols=292 Identities=16% Similarity=0.126 Sum_probs=196.2
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCC-----ceeechhhHHHHHHHHHHHhccCCeeE
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-----RVLDTPITEAGFTGIGVGAAYYGLKPV 111 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~-----R~i~~GIaE~~~vg~AaGlA~~G~~p~ 111 (367)
++..+|++.+... .+.+++..-+ ...++.. .+.+.+.. |+ .|+++ .+|.+++++|.|+|.+|.|.+
T Consensus 13 ~~GNeAiA~ga~~---Ag~~~~a~YP-ITPsTeI---~e~la~~~-~~g~~~~~~vq~-E~E~~A~~~~~GAs~aGaRa~ 83 (407)
T PRK09622 13 WDGNTAASNALRQ---AQIDVVAAYP-ITPSTPI---VQNYGSFK-ANGYVDGEFVMV-ESEHAAMSACVGAAAAGGRVA 83 (407)
T ss_pred cchHHHHHHHHHH---hCCCEEEEEC-CCCccHH---HHHHHHHh-hCCCcCcEEEee-ccHHHHHHHHHHHHhhCcCEE
Confidence 5667777776653 5677777665 2233322 23444443 43 47776 699999999999999999999
Q ss_pred EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCCch-hHHHHHHhcCCCcEEEeeCCHHHHHH
Q 017714 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARG 189 (367)
Q Consensus 112 ~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH~-~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (367)
++|.. ..+..+.|.|-.... ..+|+|++... |...+ -+++. |.|. +.....++.+++|+|+||+++
T Consensus 84 TaTS~-~Gl~lm~E~l~~aa~---------~~~P~V~~~~~R~~~~~-~~i~~d~~D~-~~~r~~g~ivl~p~s~QEa~d 151 (407)
T PRK09622 84 TATSS-QGLALMVEVLYQASG---------MRLPIVLNLVNRALAAP-LNVNGDHSDM-YLSRDSGWISLCTCNPQEAYD 151 (407)
T ss_pred eecCc-chHHHHhhHHHHHHH---------hhCCEEEEEeccccCCC-cCCCchHHHH-HHHhcCCeEEEeCCCHHHHHH
Confidence 99974 455677798865443 68998888653 32223 33442 3443 333466899999999999999
Q ss_pred HHHHhHcC------CCcEEEeccccc-cCC--CC--C--------------cc-------c----cccCCCccc------
Q 017714 190 LLKAAIRD------PDPVVFLENELL-YGE--SF--P--------------VS-------A----EVLDSSFCL------ 227 (367)
Q Consensus 190 ~~~~a~~~------~~Pv~ir~~~~~-~~~--~~--~--------------~~-------~----~~~~~~~~~------ 227 (367)
+...|++. ..|++++.+..+ -+. .+ + .. + .....+..+
T Consensus 152 ~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 231 (407)
T PRK09622 152 FTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQL 231 (407)
T ss_pred HHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhc
Confidence 99999873 689999876432 110 00 0 00 0 000000000
Q ss_pred ----------------c----CCc----EEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHH
Q 017714 228 ----------------P----IGK----AKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST 282 (367)
Q Consensus 228 ----------------~----~Gk----~~v~-~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~ 282 (367)
. .|+ .+.. .+++|++||++|+++..+++|++.|+++|++++++++++++|||.+.
T Consensus 232 ~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~ 311 (407)
T PRK09622 232 HHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYER 311 (407)
T ss_pred chhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHH
Confidence 0 110 1111 14689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCC-CCCe---EEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 017714 283 INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYL-DAPV---ERIAGADVPMPYAANLERMAVPQVLCFLYDSSI 358 (367)
Q Consensus 283 l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~-~~~v---~~ig~~d~~~~~~~~l~~~~~l~~~~I~~~~i~ 358 (367)
|.+.++++++|+|+|++...||+|+.+.+.+..-..... ..++ ..+|.. + ..+++++|.+. ++
T Consensus 312 l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~v~~~~~g~g------G------~~~t~~~i~~~-~~ 378 (407)
T PRK09622 312 LGQALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPVVSNYIYGLG------G------RDMTIAHLCEI-FE 378 (407)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCceEeeeEECCC------C------CCCCHHHHHHH-HH
Confidence 999999999999999999999999877766643211100 1233 223331 1 13688888887 77
Q ss_pred HHhh
Q 017714 359 DGCY 362 (367)
Q Consensus 359 ~~l~ 362 (367)
++..
T Consensus 379 ~l~~ 382 (407)
T PRK09622 379 ELNE 382 (407)
T ss_pred HHHh
Confidence 7654
No 41
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.86 E-value=6.8e-19 Score=174.02 Aligned_cols=255 Identities=13% Similarity=0.125 Sum_probs=173.0
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCC-----CceeechhhHHHHHHHHHHHhccCCeeE
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP-----ERVLDTPITEAGFTGIGVGAAYYGLKPV 111 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p-----~R~i~~GIaE~~~vg~AaGlA~~G~~p~ 111 (367)
++..+|++.+.. ..+.+++..-+ ...++.. .+.+.+.. + -.|+++ .+|.+++++|.|+|++|.|.+
T Consensus 6 l~GNeAiA~ga~---~ag~~~~a~YP-ITPsTei---~e~la~~~-~~G~~~~~~~~~-E~E~aA~~~aiGAs~aGaRa~ 76 (390)
T PRK08366 6 VSGNYAAAYAAL---HARVQVVAAYP-ITPQTSI---IEKIAEFI-ANGEADIQYVPV-ESEHSAMAACIGASAAGARAF 76 (390)
T ss_pred eeHHHHHHHHHH---HhCCCEEEEEC-CCChhHH---HHHHHHHh-hCCCCCeEEEEe-CCHHHHHHHHHHHHhhCCCeE
Confidence 456667766554 35777777655 2233332 12333332 3 233333 799999999999999999999
Q ss_pred EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCCCCCCCc-hhHHHHHHhcCCCcEEEeeCCHHHHH
Q 017714 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDAR 188 (367)
Q Consensus 112 ~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~g~G~tH-~~~~~a~~~~iP~~~V~~P~d~~e~~ 188 (367)
++|.. ..+..+.|+|-. ++. ..+|+|+... . |+ ++ .++| .|.|. ++....++.+++|+|+||++
T Consensus 77 TaTSg-~Gl~lm~E~l~~-aa~--------~~lPiVi~~~~R~~p-~~-~~~~~~q~D~-~~~~d~g~i~~~~~~~QEa~ 143 (390)
T PRK08366 77 TATSA-QGLALMHEMLHW-AAG--------ARLPIVMVDVNRAMA-PP-WSVWDDQTDS-LAQRDTGWMQFYAENNQEVY 143 (390)
T ss_pred eeeCc-ccHHHHhhHHHH-HHh--------cCCCEEEEEeccCCC-CC-CCCcchhhHH-HHHhhcCEEEEeCCCHHHHH
Confidence 99974 455677899864 333 5899998864 2 33 23 4554 35553 34445589999999999999
Q ss_pred HHHHHhHc----CCCcEEEeccccccCC-----------------------------CCCccc---cccCC----Ccc--
Q 017714 189 GLLKAAIR----DPDPVVFLENELLYGE-----------------------------SFPVSA---EVLDS----SFC-- 226 (367)
Q Consensus 189 ~~~~~a~~----~~~Pv~ir~~~~~~~~-----------------------------~~~~~~---~~~~~----~~~-- 226 (367)
++...|++ +..|++++.+..+..+ ..|... ..++. ++.
T Consensus 144 d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~ 223 (390)
T PRK08366 144 DGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIA 223 (390)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhh
Confidence 99999986 4789999975321100 000000 00000 000
Q ss_pred ----------------c--cCCcE-----EEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHH
Q 017714 227 ----------------L--PIGKA-----KIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST 282 (367)
Q Consensus 227 ----------------~--~~Gk~-----~v~~-~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~ 282 (367)
+ .+|+. +... +++|++||++|++...+++|++.|+++|++++++.+++++|||.+.
T Consensus 224 ~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~ 303 (390)
T PRK08366 224 KAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEE 303 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHH
Confidence 0 01211 1111 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEeCCCCCCch---HHHHHHHH
Q 017714 283 INASVRKTNRLVTVEEGFPQHGV---GAEICASV 313 (367)
Q Consensus 283 l~~~~~~~~~ivvvEe~~~~GGl---g~~v~~~l 313 (367)
|.+.+++.++|+|+|++...|.+ ..++...+
T Consensus 304 i~~~l~~~k~ViVvE~n~~~Gq~g~l~~ev~~~l 337 (390)
T PRK08366 304 LYEIAESVKGIAVLDRNFSFGQEGILFTEAKGAL 337 (390)
T ss_pred HHHHHhcCCEEEEEeCCCCCCcccHHHHHHHHHH
Confidence 99999999999999999766764 44444444
No 42
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.84 E-value=2.9e-18 Score=169.85 Aligned_cols=259 Identities=17% Similarity=0.166 Sum_probs=178.3
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCC-----CceeechhhHHHHHHHHHHHhccCCeeE
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP-----ERVLDTPITEAGFTGIGVGAAYYGLKPV 111 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p-----~R~i~~GIaE~~~vg~AaGlA~~G~~p~ 111 (367)
++..+|++.+... .+.+++..-+ +..++.. .+.+.+.. + ..|+++ .+|.+++++|.|+|.+|.|.+
T Consensus 7 ~~GNeAvA~aa~~---Ag~~v~a~YP-ITPsTei---~e~la~~~-~~g~~~~~~v~~-EsE~aA~~~~~GAs~aGaRa~ 77 (394)
T PRK08367 7 MKANEAAAWAAKL---AKPKVIAAFP-ITPSTLV---PEKISEFV-ANGELDAEFIKV-ESEHSAISACVGASAAGVRTF 77 (394)
T ss_pred ccHHHHHHHHHHH---hCCCEEEEEC-CCCccHH---HHHHHHHh-hcCCcCeEEEEe-CCHHHHHHHHHHHHhhCCCeE
Confidence 5667777776653 5777777655 2233322 13333322 3 345555 799999999999999999999
Q ss_pred EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 017714 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL 190 (367)
Q Consensus 112 ~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~ 190 (367)
++|. +..+..+.|++-. ++. ..+|+|++... +.+.+.+.+..|.| .+....-+|.++.|+|.||++++
T Consensus 78 TaTS-~~Gl~lm~E~l~~-aag--------~~lP~V~vv~~R~~~~p~~i~~d~~D-~~~~rd~g~~~~~a~~~QEa~D~ 146 (394)
T PRK08367 78 TATA-SQGLALMHEVLFI-AAG--------MRLPIVMAIGNRALSAPINIWNDWQD-TISQRDTGWMQFYAENNQEALDL 146 (394)
T ss_pred eeec-cchHHHHhhHHHH-HHH--------ccCCEEEEECCCCCCCCCCcCcchHH-HHhccccCeEEEeCCCHHHHHHH
Confidence 9997 5566677898754 333 68999998743 22222233323454 33444567999999999999999
Q ss_pred HHHhHcC----C--CcEEEeccccccC-CC----C----------C-c----------ccc----c-cCCCc-----c--
Q 017714 191 LKAAIRD----P--DPVVFLENELLYG-ES----F----------P-V----------SAE----V-LDSSF-----C-- 226 (367)
Q Consensus 191 ~~~a~~~----~--~Pv~ir~~~~~~~-~~----~----------~-~----------~~~----~-~~~~~-----~-- 226 (367)
...|++. + .|++++.+..+.. .. . | . .+. . ..+.+ .
T Consensus 147 ~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~ 226 (394)
T PRK08367 147 ILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVW 226 (394)
T ss_pred HHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecH
Confidence 9999862 3 6999987642110 00 0 0 0 000 0 00000 0
Q ss_pred ----------------c--cCC-cEEEee----eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHH
Q 017714 227 ----------------L--PIG-KAKIER----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI 283 (367)
Q Consensus 227 ----------------~--~~G-k~~v~~----~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l 283 (367)
+ .+| ++..+. +++|++||++|+....+++|++.|+++|++|+++.+++++|||.+.|
T Consensus 227 ~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i 306 (394)
T PRK08367 227 EAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEI 306 (394)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHH
Confidence 0 023 122221 46899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEeCCCC---CCchHHHHHHHHHH
Q 017714 284 NASVRKTNRLVTVEEGFP---QHGVGAEICASVIE 315 (367)
Q Consensus 284 ~~~~~~~~~ivvvEe~~~---~GGlg~~v~~~l~~ 315 (367)
.+.+++.++|+|+|.+.. .|.|..+|...|..
T Consensus 307 ~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~ 341 (394)
T PRK08367 307 RALAKKAKVLAFLEKNISFGLGGAVFADASAALVN 341 (394)
T ss_pred HHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhc
Confidence 999999999999999864 35678888888753
No 43
>PRK05261 putative phosphoketolase; Provisional
Probab=99.83 E-value=2.3e-18 Score=180.80 Aligned_cols=326 Identities=13% Similarity=0.098 Sum_probs=214.0
Q ss_pred hhhhhhhhhccCCCCcccccccc--cccccccc---------ccccccHHHHHHHHHHHHHhhCCc-EEEEecCCCCccc
Q 017714 2 WGIIRQKVAAGGGSPVARIRPVV--SNLRNYSS---------AVKQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQG 69 (367)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~r~a~~~~L~~l~~~d~~-vv~l~aDl~~~~g 69 (367)
|.+++++-.|-|..|.+...... +.+.++.. .....++|. +++.|.++++.||+ +.+.++|...|+.
T Consensus 345 ~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNr 423 (785)
T PRK05261 345 AALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNR 423 (785)
T ss_pred HHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhc
Confidence 45667777788888866544111 22233321 223457888 99999999999999 8889999987665
Q ss_pred ccccchh-------------HHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHH---HHHHHHH----HH
Q 017714 70 AYKISKG-------------LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS---MQAIDHI----IN 129 (367)
Q Consensus 70 ~~~~~~~-------------~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~---~ra~dqi----~~ 129 (367)
...+.+. ..... ..|+++ |++|++|.|++.|+++.|.++++++|.+ |+ ..++.|+ |.
T Consensus 424 l~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~~sYea-F~~ivd~m~~q~~kw~r~ 500 (785)
T PRK05261 424 LQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEGWLEGYLLTGRHGFFSSYEA-FIHIVDSMFNQHAKWLKV 500 (785)
T ss_pred cHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHHHHHHHHhcCCCcceecHHH-HHHHHHHHHHHHHHHHHH
Confidence 4221100 01122 479999 9999999999999999999999999865 44 6667776 43
Q ss_pred HHhhccccCCCCccccEE-EE-eCCCCCCC-CCCCchhH---HH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-CCc
Q 017714 130 SAAKSNYMSSGQISVPIV-FR-GPNGAAAG-VGAQHSHC---YA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDP 200 (367)
Q Consensus 130 ~~a~~~~~~~~~~~~pvv-~~-~~~G~~~g-~G~tH~~~---~~--a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-~~P 200 (367)
.. ...|+ .+++-+ ++ .++....| +|.|| |. .+ +-++. |++.|+.|+|++|+..+++.|++. +.|
T Consensus 501 ~~-~~~wr----~~~~sLn~l~Ts~~~~qghNG~TH-Q~Pg~ie~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p 573 (785)
T PRK05261 501 AR-EIPWR----KPIPSLNYLLTSHVWRQDHNGFSH-QDPGFIDHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYI 573 (785)
T ss_pred Hh-hcccC----CCCcceeEEeecceeecCCCCCCC-CCchHHHHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCC
Confidence 31 22232 234322 22 34555566 99999 54 44 45566 999999999999999999999986 689
Q ss_pred EEEeccccccCCCCCccccccCCC---ccccCCcEEEee-e-----CCcEEEEEechhHHH-HHHHHHHHHhc--CCceE
Q 017714 201 VVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIER-E-----GKDVTITAFSKIVGL-SLKAAEILAKE--GISAE 268 (367)
Q Consensus 201 v~ir~~~~~~~~~~~~~~~~~~~~---~~~~~Gk~~v~~-~-----g~di~Iia~G~~v~~-al~Aa~~L~~~--Gi~v~ 268 (367)
.+|..+|. +.|. ....+ ..+..|.+.+.. + +.|++|+++|+.+.. |++|+++|+++ |++++
T Consensus 574 ~~IvlsRQ----~lp~---~~~~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvR 646 (785)
T PRK05261 574 NVIVAGKQ----PRPQ---WLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIR 646 (785)
T ss_pred EEEEEeCC----CCcc---cCChHHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEE
Confidence 99987765 2111 11111 224456444431 1 359999999999998 99999999999 99999
Q ss_pred EEEeeecCCC------------CHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCC
Q 017714 269 VINLRSIRPL------------DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMP 336 (367)
Q Consensus 269 vi~~~~i~P~------------d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~ 336 (367)
||++. .+| +.+.+.++.-..+.||+. = -|.-+.|...+..+. ...++...|-.+....
T Consensus 647 VVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~-~----hgyp~~i~~l~~~r~---~~~~~~v~gy~e~g~t 716 (785)
T PRK05261 647 VVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA-F----HGYPWLIHRLTYRRT---NHHNFHVRGYKEEGTT 716 (785)
T ss_pred EEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE-e----CCCHHHHHHHhccCC---CCCccEEEEEecCCCC
Confidence 99994 333 334555544444454442 2 244566666665542 1245666677664332
Q ss_pred -CHHHHHHHhCCCHHHHHHH
Q 017714 337 -YAANLERMAVPQVLCFLYD 355 (367)
Q Consensus 337 -~~~~l~~~~~l~~~~I~~~ 355 (367)
..-.+.-...+|--+++..
T Consensus 717 ttp~dm~~~N~~~r~~l~~~ 736 (785)
T PRK05261 717 TTPFDMVVLNELDRFHLAID 736 (785)
T ss_pred CCHHHHHHHhCCCHHHHHHH
Confidence 2234444556777777766
No 44
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.83 E-value=1.2e-18 Score=180.45 Aligned_cols=261 Identities=19% Similarity=0.250 Sum_probs=176.2
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 115 (367)
.++-.+|++.+... ...+++..-+ ...++...-....+..++ .-.|+++ .+|.+++++|.|+|++|.|.+++|.
T Consensus 195 ~l~GNeAvA~ga~~---ag~~~~~~YP-iTPsTei~e~la~~~~~~-~~~~~q~-E~E~aA~~~a~GAs~aG~Ra~taTS 268 (562)
T TIGR03710 195 LISGNEAIALGAIA---AGLRFYAAYP-ITPASDILEFLAKHLKKF-GVVVVQA-EDEIAAINMAIGASYAGARAMTATS 268 (562)
T ss_pred EeehHHHHHHHHHH---hCCceecccC-CCChhHHHHHHHHhhhhh-CcEEEee-ccHHHHHHHHHhHHhcCCceeecCC
Confidence 46777888776543 3555555443 222332211111222234 3445554 8999999999999999999999998
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC--CCCCCCCCCchhHHH--HHHhc--CCCcEEEeeCCHHHHHH
Q 017714 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQHSHCYA--AWYAS--VPGLKVLSPYSSEDARG 189 (367)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tH~~~~~--a~~~~--iP~~~V~~P~d~~e~~~ 189 (367)
.+.| ..+.|.+-. ++ ...+|+|++..+ |+++|....+.|.|. +.+.. .-++.|++|+|+||+++
T Consensus 269 g~Gl-~lm~E~l~~-a~--------~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d 338 (562)
T TIGR03710 269 GPGF-ALMTEALGL-AG--------MTETPLVIVDVQRGGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFY 338 (562)
T ss_pred CCCh-hHhHHHHhH-HH--------hccCCEEEEEcccCCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHH
Confidence 5554 567788732 22 168999998753 676665555556654 33322 34589999999999999
Q ss_pred HHHHhHc----CCCcEEEeccccccCCCCCc----cccc--------------c-----CC----Ccccc----------
Q 017714 190 LLKAAIR----DPDPVVFLENELLYGESFPV----SAEV--------------L-----DS----SFCLP---------- 228 (367)
Q Consensus 190 ~~~~a~~----~~~Pv~ir~~~~~~~~~~~~----~~~~--------------~-----~~----~~~~~---------- 228 (367)
+..+|++ +..||+++.+..+-+...++ .+.+ + ++ ....+
T Consensus 339 ~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~ 418 (562)
T TIGR03710 339 LAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRYELTEDGISPRAIPGTPGGIHRAT 418 (562)
T ss_pred HHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCCCcCCCCCCCCCcCCCCCceEEec
Confidence 9999886 57899998653221100000 0000 0 00 00000
Q ss_pred ----------------------------------CCcEEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 229 ----------------------------------IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 229 ----------------------------------~Gk~~v~~-~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
.+..+... +++|++||+||++...+++|++.|+++|++++++.++
T Consensus 419 ~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~ 498 (562)
T TIGR03710 419 GDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLR 498 (562)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 00011111 3578999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHH
Q 017714 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
+++|||.+.|.+.+++.++|+|+|++.. |.|..+|...+
T Consensus 499 ~~~PfP~~~i~~~l~~~k~v~VvE~n~~-Gql~~~v~~~~ 537 (562)
T TIGR03710 499 LLYPFPKDELAELLEGAKKVIVVEQNAT-GQLAKLLRAET 537 (562)
T ss_pred eecCCCHHHHHHHHhcCCEEEEEccChh-hhHHHHHHHHh
Confidence 9999999999999999999999999853 77887777665
No 45
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.77 E-value=1.6e-16 Score=167.23 Aligned_cols=298 Identities=15% Similarity=0.200 Sum_probs=207.4
Q ss_pred ccccHHHHHHHHHHHHHhh---CCcEEEEecCCCCcccccccchhHHHHh------------------------CCCcee
Q 017714 35 KQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKISKGLLEKY------------------------GPERVL 87 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~---d~~vv~l~aDl~~~~g~~~~~~~~~~~~------------------------~p~R~i 87 (367)
+.+++..||.+.|.+|++. .++||-+.+|.+.+.|. .+++.+. ...|.+
T Consensus 487 ~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm----~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~l 562 (885)
T TIGR00759 487 REVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGM----EGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQIL 562 (885)
T ss_pred CCccHHHHHHHHHHHHhcCcccccceeecCCCccccCCh----HHhhcccCccCCCCccCCccchhhhhhcccCCCCcch
Confidence 6799999999999999875 46799999999876543 3333321 147899
Q ss_pred echhhHHHHHH--HHHHHhcc--C--CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCcccc-EEEEeCCCCC--CC
Q 017714 88 DTPITEAGFTG--IGVGAAYY--G--LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAA--AG 157 (367)
Q Consensus 88 ~~GIaE~~~vg--~AaGlA~~--G--~~p~~~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~G~~--~g 157 (367)
+.||+|.++++ +|+|.|.+ | +.||.-. |+.| .||..|.+ ..+|. +... .++-++.|.+ .|
T Consensus 563 e~GI~E~g~~~~~~aagtsys~~g~~miP~yi~-YsmFgfqR~gD~~-waa~d--------~~argfl~g~taGrtTL~g 632 (885)
T TIGR00759 563 QEGINEAGAMASWIAAATSYATHGEPMIPFYIY-YSMFGFQRIGDLC-WAAAD--------QRARGFLLGATAGRTTLNG 632 (885)
T ss_pred hhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEe-eccccccchHHHH-HHHhh--------hcCCceEeccCCCcccCCC
Confidence 99999999988 67777765 5 5788855 5666 99999986 45565 3443 4444455543 36
Q ss_pred CCCCchhHHH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHcC----CCcEEEeccccccCCCCCccccccCC-CccccCC
Q 017714 158 VGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIG 230 (367)
Q Consensus 158 ~G~tH~~~~~--a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~----~~Pv~ir~~~~~~~~~~~~~~~~~~~-~~~~~~G 230 (367)
.|-+| |.-. .+...+||+.-|.|+...|+..++++.++. ...+|.+.+. +.++++. +..++. ...+..|
T Consensus 633 EGlqH-qdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~--~ne~~~q-p~~p~~~~egIlkG 708 (885)
T TIGR00759 633 EGLQH-EDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTV--MNENYVQ-PPMPEGAEEGILKG 708 (885)
T ss_pred ccccC-ccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEe--cCCCCCC-CCCCcchHHhHHhC
Confidence 78888 4333 466779999999999999999999988863 5677776543 1111111 111211 1123334
Q ss_pred cEEEeee------CCcEEEEEechhHHHHHHHHHHHHhc-CCceEEEEeeecCCCCHHHH-------------------H
Q 017714 231 KAKIERE------GKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTI-------------------N 284 (367)
Q Consensus 231 k~~v~~~------g~di~Iia~G~~v~~al~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l-------------------~ 284 (367)
-+. +++ +.++.|+++|+.+.++++|+++|+++ |+.++|++++|..-|..+.. .
T Consensus 709 ~Y~-l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~ 787 (885)
T TIGR00759 709 LYR-FETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVA 787 (885)
T ss_pred cee-cccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHH
Confidence 333 332 24799999999999999999999987 99999999999887777643 1
Q ss_pred HHHhc-CCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHh
Q 017714 285 ASVRK-TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVLCFLYDSSIDGC 361 (367)
Q Consensus 285 ~~~~~-~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~--~~~l~~~~~l~~~~I~~~~i~~~l 361 (367)
+.+.. ...+|++-|... .+.+.+.. ..+.+...+|.. .|+.+ -+.|.+++++|++.|+.+ +.+.|
T Consensus 788 ~~L~~~~gP~va~tDy~~------~~~~qir~----~vp~~~~~LGtD-gFGrSdtr~~lr~~fevDa~~IV~A-AL~aL 855 (885)
T TIGR00759 788 QVLNEADAPVIASTDYVR------AFAEQIRP----YVPRKYVTLGTD-GFGRSDTRENLRHFFEVDAKSVVLA-ALYAL 855 (885)
T ss_pred HHhccCCCCEEEEccchh------hhHHHHhh----hcCCCceEecCC-CCCCCCCHHHHHHHcCCCHHHHHHH-HHHHH
Confidence 22222 336777777532 23333421 246678888885 56654 367899999999999999 88887
Q ss_pred hh
Q 017714 362 YK 363 (367)
Q Consensus 362 ~~ 363 (367)
.+
T Consensus 856 ~~ 857 (885)
T TIGR00759 856 AD 857 (885)
T ss_pred hh
Confidence 54
No 46
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.63 E-value=7.4e-14 Score=141.47 Aligned_cols=253 Identities=18% Similarity=0.182 Sum_probs=177.9
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCch
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS 163 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~ 163 (367)
+-+++.+..|.-+..+|+|++..|.|.++..- ...++++.|.+.+ +++.. .+--++++..|-+ |...++.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK-hVGlNvAsDpl~s-~ay~G------v~GGlviv~aDDp--g~~SSqn 127 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMK-HVGLNVASDPLMS-LAYAG------VTGGLVIVVADDP--GMHSSQN 127 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEec-ccccccchhhhhh-hhhcC------ccccEEEEEccCC--Ccccccc
Confidence 78999999999999999999999999999875 7789999999875 44531 4455666654322 1122222
Q ss_pred hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEeccccccCCC--C-----CccccccCC-CccccCCc
Q 017714 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGES--F-----PVSAEVLDS-SFCLPIGK 231 (367)
Q Consensus 164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~~~~~~~--~-----~~~~~~~~~-~~~~~~Gk 231 (367)
+.+..++.....+.|+.|+|+||++++++.+++ +..||++|.....-+.. + +..+..+.. .+.-..++
T Consensus 128 eqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r 207 (640)
T COG4231 128 EQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGR 207 (640)
T ss_pred hhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccc
Confidence 233456666677789999999999999999997 47899998643221110 0 000000000 11001111
Q ss_pred E-------------------------------EEee--eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCC
Q 017714 232 A-------------------------------KIER--EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL 278 (367)
Q Consensus 232 ~-------------------------------~v~~--~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~ 278 (367)
+ ..+. +..++-||+.|.....+++|.+.| |++..++.+-+.+||
T Consensus 208 ~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Pl 284 (640)
T COG4231 208 YVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPL 284 (640)
T ss_pred eeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCC
Confidence 1 1111 237899999999999999986655 899999999999999
Q ss_pred CHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 017714 279 DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSI 358 (367)
Q Consensus 279 d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~~~~i~ 358 (367)
|.+.+++.++.-++|+||||.... +-.++.+.+.+.+ .++.-.|..+.+.|- .+.+|++.|..+ |.
T Consensus 285 p~~~i~~F~~g~~~vlVVEE~~P~--iE~qv~~~l~~~g-----~~v~v~GKd~gllP~------~GElt~~~i~~a-i~ 350 (640)
T COG4231 285 PEQLIENFLKGLERVLVVEEGEPF--IEEQVKALLYDAG-----LPVEVHGKDEGLLPM------EGELTPEKIANA-IA 350 (640)
T ss_pred CHHHHHHHHhcCcEEEEEecCCch--HHHHHHHHHHhcC-----CceEeecccccccCc------ccccCHHHHHHH-HH
Confidence 999999999999999999999864 6777777776642 345445554444443 335799999999 98
Q ss_pred HHhhh
Q 017714 359 DGCYK 363 (367)
Q Consensus 359 ~~l~~ 363 (367)
+++.+
T Consensus 351 ~~l~~ 355 (640)
T COG4231 351 KFLGK 355 (640)
T ss_pred HHhCc
Confidence 88875
No 47
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.60 E-value=1.2e-12 Score=128.83 Aligned_cols=253 Identities=18% Similarity=0.176 Sum_probs=161.2
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~ 116 (367)
++-.+|++.+... ..++++..-+ +..++...-....+..+. .-.|+++ .+|.++++++.|++.+|.|.+++|+.
T Consensus 6 ~~Gn~AvA~~a~~---a~~~~~a~YP-ITPss~i~e~l~~~~~~~-~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg 79 (365)
T COG0674 6 MDGNEAVAYAAIA---AGCRVIAAYP-ITPSSEIAEYLASWKAKV-GGVFVQM-ESEIGAISAVIGASYAGARAFTATSG 79 (365)
T ss_pred ccHHHHHHHHHHh---cCCcEEEEeC-CCCchHHHHHHHHHHhhc-CcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCC
Confidence 4556677666543 3567777665 222322211112233334 4678888 89999999999999999999999986
Q ss_pred ccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 017714 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (367)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a 194 (367)
+.|+ .+.+.+-. ++ ...+|+|+... .|++.|+.....|.|.-..+.- ++.+++-+|.||+++....|
T Consensus 80 ~Gl~-Lm~E~l~~-a~--------~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~A 148 (365)
T COG0674 80 QGLL-LMAEALGL-AA--------GTETPLVIVVAQRPLPSTGLPIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLLA 148 (365)
T ss_pred ccHH-HHHHHHHH-HH--------hccCCeEEEEeccCcCCCcccccccHHHHHHHHcc-CceEEeeccHHHHHHHHHHH
Confidence 6655 45566543 32 26899999865 3455554333345555333333 88888888999999988887
Q ss_pred Hc----CCCcEEEecccccc----------------------CCC--C-CccccccC----CC----------ccc----
Q 017714 195 IR----DPDPVVFLENELLY----------------------GES--F-PVSAEVLD----SS----------FCL---- 227 (367)
Q Consensus 195 ~~----~~~Pv~ir~~~~~~----------------------~~~--~-~~~~~~~~----~~----------~~~---- 227 (367)
++ ...|+++..+..+- .+. . |..+..+. .+ ...
T Consensus 149 f~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 228 (365)
T COG0674 149 FNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAED 228 (365)
T ss_pred HHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccch
Confidence 76 46799988542111 000 0 00000000 00 000
Q ss_pred ------------cCCc----EEEee-eCCcEEEEEechhHHHHHHHHHHH-HhcCCceEEEEeeecCCCCHHHHHHHHhc
Q 017714 228 ------------PIGK----AKIER-EGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEVINLRSIRPLDRSTINASVRK 289 (367)
Q Consensus 228 ------------~~Gk----~~v~~-~g~di~Iia~G~~v~~al~Aa~~L-~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~ 289 (367)
..|+ +.+.. ++++++||+||+....+++|+..+ +++|++|+++.+++++|||.+.|.+.+++
T Consensus 229 ~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~ 308 (365)
T COG0674 229 DVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPK 308 (365)
T ss_pred HHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcc
Confidence 0111 11211 578899999998888888887765 58899999999999999999999999998
Q ss_pred CCeEEEEeCCCCCCchH
Q 017714 290 TNRLVTVEEGFPQHGVG 306 (367)
Q Consensus 290 ~~~ivvvEe~~~~GGlg 306 (367)
++.+.|++-....|+++
T Consensus 309 ~~~~~Vl~~e~~~g~~~ 325 (365)
T COG0674 309 TNAVVVLDVEISLGGLA 325 (365)
T ss_pred cceeEEEEEccCCccch
Confidence 87555555554456633
No 48
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.59 E-value=9.5e-13 Score=145.91 Aligned_cols=261 Identities=15% Similarity=0.143 Sum_probs=168.8
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCC-------ceeechhhHHHHHHHHHHHhccCCe
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK 109 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~-------R~i~~GIaE~~~vg~AaGlA~~G~~ 109 (367)
++..+|++.+... ..+++..-+ +..++...-....+.++- +. .|+++ -+|.++++++.|.+.+|.|
T Consensus 4 ~~GNeAvA~~A~~----~~~~~~~YP-ITPss~i~e~l~~~~~~g-~~n~~G~~~~~vq~-EsE~~A~~av~GA~~aGar 76 (1165)
T TIGR02176 4 MDGNTAAAHVAYA----FSEVAAIYP-ITPSSTMGEYVDDWAAQG-RKNIFGQTVKVVEM-QSEAGAAGAVHGALQTGAL 76 (1165)
T ss_pred eeHHHHHHHHHHH----hCCEEEEEC-CCCCcHHHHHHHHHHHhC-CcccCCCCceEEEc-cchHHHHHHHHhHhhcCCC
Confidence 4566777765532 447766554 333332211111223322 22 57777 7999999999999999999
Q ss_pred eEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC--CCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHH
Q 017714 110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDA 187 (367)
Q Consensus 110 p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~ 187 (367)
.++.|.++.| ....+.+-. ++- ..+|+|+.... +.+.+....-.|.|. +...--|+.+++|+|.||+
T Consensus 77 a~T~TSs~GL-~LM~e~l~~-~ag--------~~~P~Vi~va~R~~~~~~~~i~~dh~Dv-~~~R~~G~ivl~s~svQEa 145 (1165)
T TIGR02176 77 TTTFTASQGL-LLMIPNMYK-IAG--------ELLPCVFHVSARAIAAHALSIFGDHQDV-MAARQTGFAMLASSSVQEV 145 (1165)
T ss_pred EEEecChhHH-HHHHHHHHH-HHh--------ccCCEEEEEecCCCCCCCCccCCCchHH-HHhhcCCeEEEeCCCHHHH
Confidence 9999975554 455676632 221 47899998652 343332111123333 2224448999999999999
Q ss_pred HHHHHHhHc----CCCcEEEeccccccCCCC-Cc-------------------------cccc-------cCCCcc----
Q 017714 188 RGLLKAAIR----DPDPVVFLENELLYGESF-PV-------------------------SAEV-------LDSSFC---- 226 (367)
Q Consensus 188 ~~~~~~a~~----~~~Pv~ir~~~~~~~~~~-~~-------------------------~~~~-------~~~~~~---- 226 (367)
.++...|++ ...|++++.+-....+.. ++ .+.- .+.+..
T Consensus 146 ~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G~~~~~~~~~~~~ 225 (1165)
T TIGR02176 146 MDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHPHVRGTAQNPDIYFQGR 225 (1165)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCCceeCCCCCcchhhhhH
Confidence 998888765 678999886532111100 00 0000 000000
Q ss_pred -------------c---------cCCc----EEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCC
Q 017714 227 -------------L---------PIGK----AKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD 279 (367)
Q Consensus 227 -------------~---------~~Gk----~~v~-~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d 279 (367)
+ ..|+ .+.. .++++.+||++|+....+++|++.|+++|++|++|.+++++|||
T Consensus 226 e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kVGli~vr~~rPFp 305 (1165)
T TIGR02176 226 EAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKVGLLKVRLYRPFS 305 (1165)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCceeEEEEeEeCCCC
Confidence 0 0121 1111 24689999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hcCCeEEEEeCCCCCC----chHHHHHHHHHH
Q 017714 280 RSTINASV-RKTNRLVTVEEGFPQH----GVGAEICASVIE 315 (367)
Q Consensus 280 ~~~l~~~~-~~~~~ivvvEe~~~~G----Glg~~v~~~l~~ 315 (367)
.+.|.+.+ +..++|+|+|.....| -|..+|...+..
T Consensus 306 ~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~ 346 (1165)
T TIGR02176 306 AETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE 346 (1165)
T ss_pred HHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence 99999888 5789999999985433 477888877754
No 49
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.58 E-value=2.9e-13 Score=137.50 Aligned_cols=302 Identities=17% Similarity=0.195 Sum_probs=202.2
Q ss_pred ccccccccHHHHHHHHHHHHHhh---CCcEEEEecCCCCcccccccchhHHHHhC------------------------C
Q 017714 31 SSAVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKISKGLLEKYG------------------------P 83 (367)
Q Consensus 31 ~~~~~~~~~r~a~~~~L~~l~~~---d~~vv~l~aDl~~~~g~~~~~~~~~~~~~------------------------p 83 (367)
..+++++++..||...|.++++. .++||-+.+|.+.+.|. +++..+.| .
T Consensus 486 ~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgm----eg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~ 561 (887)
T COG2609 486 KGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGM----EGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAES 561 (887)
T ss_pred hccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccc----hhhhhhcccccCCCccCCccchhhhhhhhhCCC
Confidence 34445699999999999999984 35799999999875443 33332211 4
Q ss_pred CceeechhhHHHHHH--HHHHHhcc--C--CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccccEEEEe-CCCCC
Q 017714 84 ERVLDTPITEAGFTG--IGVGAAYY--G--LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA 155 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg--~AaGlA~~--G--~~p~~~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~G~~ 155 (367)
.+.++.||+|.++++ +|+|.|.+ | +.||.- +|+.| .||..|-+ +.+|.. +--.-++.+ +++.+
T Consensus 562 GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi-~YsmFgfqRigD~~-waA~dq-------~ARgFLlgaTagrtT 632 (887)
T COG2609 562 GQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYI-YYSMFGFQRIGDLL-WAAGDQ-------DARGFLLGATAGRTT 632 (887)
T ss_pred cchHHhhhccccHHHHHHHHhcccccCCccceeeee-eechhhhhhHHHHH-HHHHhh-------hhcceeEeecCCCce
Confidence 688999999999988 67888775 4 578875 45666 89999875 556652 222244443 34443
Q ss_pred -CCCCCCchhHHHH--HHhcCCCcEEEeeCCHHHHHHHHHHhHcC-------CCcEEEeccccccCCCCCccccccCC-C
Q 017714 156 -AGVGAQHSHCYAA--WYASVPGLKVLSPYSSEDARGLLKAAIRD-------PDPVVFLENELLYGESFPVSAEVLDS-S 224 (367)
Q Consensus 156 -~g~G~tH~~~~~a--~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-------~~Pv~ir~~~~~~~~~~~~~~~~~~~-~ 224 (367)
.|.|-+| +.-.+ +-..+||+.-|.|+-+.|+.-++++.++. +.-+||+.....|.. |..|.. +
T Consensus 633 LngEGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~q-----Pamp~gae 706 (887)
T COG2609 633 LNGEGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQ-----PAMPEGAE 706 (887)
T ss_pred eCcccccc-ccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCC-----CCCCCcch
Confidence 3678888 33333 34569999999999999999999988862 234666643322221 122211 2
Q ss_pred ccccCCcEEEeee----CCcEEEEEechhHHHHHHHHHHHHh-cCCceEEEEeeecCCCCHH------------------
Q 017714 225 FCLPIGKAKIERE----GKDVTITAFSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRS------------------ 281 (367)
Q Consensus 225 ~~~~~Gk~~v~~~----g~di~Iia~G~~v~~al~Aa~~L~~-~Gi~v~vi~~~~i~P~d~~------------------ 281 (367)
..+..|-+...+. +.++.|+++|....+|++|++.|++ .|+.+.|..++|..-+-.+
T Consensus 707 ~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v 786 (887)
T COG2609 707 EGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRV 786 (887)
T ss_pred hhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCc
Confidence 2333443332221 4789999999999999999999998 5999999999987666544
Q ss_pred -HHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHH
Q 017714 282 -TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVLCFLYDSSI 358 (367)
Q Consensus 282 -~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~--~~~l~~~~~l~~~~I~~~~i~ 358 (367)
.+.+.+.....+|.+-|... ..++.+- . ..+...+.+|.+ .|+-+ -+.|++++.+|++.|+-+ +.
T Consensus 787 ~yv~~~L~~~~p~Va~tDy~~------~~a~qir--~--~vp~~y~vLGtd-gFGrSdsr~~Lr~~fevDa~~vv~A-al 854 (887)
T COG2609 787 PYVAQVLNADGPVVAVTDYMK------LFAEQIR--A--VVPQRYRVLGTD-GFGRSDSRENLRRFFEVDAYYVVVA-AL 854 (887)
T ss_pred hHHHHHhccCCCeEEechhhH------hHHHHHh--c--ccCCeeEEeccC-CCCccCcHHHHHHHhccchHHHHHH-HH
Confidence 23444443456676666543 2223331 1 235556667764 56644 367899999999999999 88
Q ss_pred HHhhh
Q 017714 359 DGCYK 363 (367)
Q Consensus 359 ~~l~~ 363 (367)
..|.+
T Consensus 855 ~~La~ 859 (887)
T COG2609 855 SALAK 859 (887)
T ss_pred HHHhc
Confidence 77754
No 50
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.34 E-value=1.2e-10 Score=127.78 Aligned_cols=302 Identities=13% Similarity=0.011 Sum_probs=187.4
Q ss_pred cccHHHHHHHHHHHHHhhCCc--E---EEEecCCCCccccc--ccchhHHHHhCC------CceeechhhHHHHHHHHHH
Q 017714 36 QMMVREALNSALDEEMSADPK--V---FLMGEEVGEYQGAY--KISKGLLEKYGP------ERVLDTPITEAGFTGIGVG 102 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~--v---v~l~aDl~~~~g~~--~~~~~~~~~~~p------~R~i~~GIaE~~~vg~AaG 102 (367)
-++-.+|+...+.+-.+.|.. + -++++ +.|+- .+...|. ++ . +-+|+.|+.|.-+..++.|
T Consensus 19 ~l~GneAivr~~l~q~~~d~~aG~~ta~~vsg----YpGsP~~~i~~~l~-~~-~~~l~~~~i~~e~~~NEkvA~e~a~G 92 (1159)
T PRK13030 19 FLTGTQALVRLLLMQRRRDRARGLNTAGFVSG----YRGSPLGGVDQALW-KA-KKLLDASDIRFLPGINEELAATAVLG 92 (1159)
T ss_pred eeeHHHHHHHHHHHhhhHHHhcCCCccceEEE----eCCCCHHHHHHHHH-Hh-hhhhcccceEEeecCCHHHHHHHHHH
Confidence 478899999988775554432 2 22221 33331 1122233 33 2 3789999999999999999
Q ss_pred Hh---------ccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhH--HHHHHh
Q 017714 103 AA---------YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC--YAAWYA 171 (367)
Q Consensus 103 lA---------~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~--~~a~~~ 171 (367)
.+ ..|.+.+++.- ...+.|+-|-+++.. + +|...+--++++..|-+ |.+-||. +.-++.
T Consensus 93 aq~~~~~~~~~~~Gv~~l~~~K-~~GvnvaaD~l~~~n-~----~G~~~~GG~v~v~gDDp----g~~SSq~eqdSr~~~ 162 (1159)
T PRK13030 93 TQQVEADPERTVDGVFAMWYGK-GPGVDRAGDALKHGN-A----YGSSPHGGVLVVAGDDH----GCVSSSMPHQSDFAL 162 (1159)
T ss_pred hccccccCCccccceEEEEecC-cCCcccchhHHHHHH-h----hcCCCCCcEEEEEecCC----CCccCcCHHHHHHHH
Confidence 99 66777788775 668899999998643 3 23223455666543322 1111121 112333
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEeccccccCC---------CC-Ccccc-c--cC----CCcc----
Q 017714 172 SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE---------SF-PVSAE-V--LD----SSFC---- 226 (367)
Q Consensus 172 ~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~~~~~~---------~~-~~~~~-~--~~----~~~~---- 226 (367)
..-+|.|+.|+|++|++++.+++++ +..||.+|.....-+. +. +..+. . +. ..+.
T Consensus 163 ~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~ 242 (1159)
T PRK13030 163 IAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPS 242 (1159)
T ss_pred HHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcH
Confidence 3334459999999999999999986 4789999853211100 00 00000 0 00 0000
Q ss_pred --------------------ccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcC-----CceEEEEeeecCCCCHH
Q 017714 227 --------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG-----ISAEVINLRSIRPLDRS 281 (367)
Q Consensus 227 --------------------~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~G-----i~v~vi~~~~i~P~d~~ 281 (367)
.++.+..+-.++.++.||++|.....++||.+.|...+ +.++|+.+-..+|||.+
T Consensus 243 ~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~ 322 (1159)
T PRK13030 243 LAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPT 322 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHH
Confidence 01121111123477999999999999999999885543 24788888899999999
Q ss_pred HHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHH
Q 017714 282 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM-PYAANLERMAVPQVLCFLYDSSIDG 360 (367)
Q Consensus 282 ~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~-~~~~~l~~~~~l~~~~I~~~~i~~~ 360 (367)
.|.+.++..+.|+||||.... +-.++.+.+.+.. ...+...+|..|.-+ | .+-....||++.|.++ +.+.
T Consensus 323 ~i~~F~~g~d~VlVVEE~~p~--iE~Qlk~~l~~~~---~~~~~~v~GK~~~~G~p---llp~~gEl~~~~v~~~-l~~~ 393 (1159)
T PRK13030 323 RLREFADGLEEILVIEEKRPV--IEQQIKDYLYNRP---GGARPRVVGKHDEDGAP---LLSELGELRPSLIAPV-LAAR 393 (1159)
T ss_pred HHHHHHhcCCEEEEEeCCchH--HHHHHHHHHHhcc---ccCCceeEEEECCCCCc---CCCCcCCcCHHHHHHH-HHHH
Confidence 999999999999999998753 5677777776542 112344567655211 1 1112345799999988 7666
Q ss_pred hh
Q 017714 361 CY 362 (367)
Q Consensus 361 l~ 362 (367)
|.
T Consensus 394 l~ 395 (1159)
T PRK13030 394 LA 395 (1159)
T ss_pred Hh
Confidence 54
No 51
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.32 E-value=4.6e-10 Score=123.00 Aligned_cols=295 Identities=14% Similarity=0.046 Sum_probs=187.7
Q ss_pred cccHHHHHHHHHHHHHhhC--CcE---EEEecCCCCccccc--ccchhHHHHhCC------CceeechhhHHHHHHHH--
Q 017714 36 QMMVREALNSALDEEMSAD--PKV---FLMGEEVGEYQGAY--KISKGLLEKYGP------ERVLDTPITEAGFTGIG-- 100 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d--~~v---v~l~aDl~~~~g~~--~~~~~~~~~~~p------~R~i~~GIaE~~~vg~A-- 100 (367)
-++-.+|+...+.+-.+.| -.+ -++++ +-|+- .+...|. ++ . +-+|+.|+.|.-+++++
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsG----YpGsP~~~id~~l~-~~-~~~l~~~~i~fe~~~NEkvAae~~~G 100 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVSG----YRGSPLGGLDQELW-RA-KKHLAAHDIVFQPGLNEDLAATAVWG 100 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEEe----eCCCCHHHHHHHHH-Hh-hhhhcccceEEeeccCHHHHHHHHhh
Confidence 4788999999887755555 333 33332 33331 1222333 22 2 37899999999999999
Q ss_pred -------HHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCC-CCCCchhHHH-HHHh
Q 017714 101 -------VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VGAQHSHCYA-AWYA 171 (367)
Q Consensus 101 -------aGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~G~tH~~~~~-a~~~ 171 (367)
.|.+..|.+.+++.- ...+.|+-|-+++.. + +|...+--++++..|-++.. .-..| |+.. ..+.
T Consensus 101 sQ~~~~~~~a~~~Gv~~l~y~K-~pGvn~aaD~l~~~n-~----~G~~~~GGvv~v~gDDpg~~SSq~eq-dSr~~~~~a 173 (1165)
T PRK09193 101 SQQVNLFPGAKYDGVFGMWYGK-GPGVDRSGDVFRHAN-A----AGTSPHGGVLALAGDDHAAKSSTLPH-QSEHAFKAA 173 (1165)
T ss_pred hcccccccceeeccceEEEecC-cCCccccHhHHHHHH-h----hcCCCCCcEEEEEecCCCCccccchh-hhHHHHHHc
Confidence 777999999999875 678999999998643 3 22223455666543322100 00112 2222 3444
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEeccccccCC-------CCCccccccCCCcccc------------
Q 017714 172 SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE-------SFPVSAEVLDSSFCLP------------ 228 (367)
Q Consensus 172 ~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~~~~~~-------~~~~~~~~~~~~~~~~------------ 228 (367)
.|| |+.|+|++|++++.++++. +..||.++.....-+. ..+.....+ .++..+
T Consensus 174 ~iP---vl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~-~~f~~~~~g~~~r~~~~p 249 (1165)
T PRK09193 174 GMP---VLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLP-EDFEMPPGGLNIRWPDPP 249 (1165)
T ss_pred CCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCc-ccccCCcccccccCCCCc
Confidence 455 9999999999999999986 4779999853211100 000000000 011111
Q ss_pred -----------------------CCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCc--------eEEEEeeecCC
Q 017714 229 -----------------------IGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS--------AEVINLRSIRP 277 (367)
Q Consensus 229 -----------------------~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~--------v~vi~~~~i~P 277 (367)
+.+..+-.++.++.||++|.....+++|.+.| |++ +.|+.+-..+|
T Consensus 250 ~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~~P 326 (1165)
T PRK09193 250 LEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMVWP 326 (1165)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCCCC
Confidence 11111111246899999999999999987776 554 89999999999
Q ss_pred CCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCC----CCCCHHHHHHHhCCCHHHHH
Q 017714 278 LDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV----PMPYAANLERMAVPQVLCFL 353 (367)
Q Consensus 278 ~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~----~~~~~~~l~~~~~l~~~~I~ 353 (367)
||.+.|.+.+++.+.|+||||-... +-.+|.+.+.+.. ...+...+|..|. ..|. ...|+++.|.
T Consensus 327 L~~~~i~~Fa~g~~~vlVVEE~~p~--iE~qlk~~l~~~~---~~~rp~v~GK~~~~g~~llp~------~gEl~~~~va 395 (1165)
T PRK09193 327 LEPQGVRAFAEGLDEILVVEEKRQI--IEYQLKEELYNWP---DDVRPRVIGKFDPQGNWLLPA------HGELSPAIIA 395 (1165)
T ss_pred CCHHHHHHHHhcCCEEEEEecCchH--HHHHHHHHHhhcc---CCcCceeEeeeCCCCCccCCC------cCCcCHHHHH
Confidence 9999999999999999999998653 6677777776542 2332345777652 2232 3457899988
Q ss_pred HHHHHHHhh
Q 017714 354 YDSSIDGCY 362 (367)
Q Consensus 354 ~~~i~~~l~ 362 (367)
+. +.+.+.
T Consensus 396 ~~-l~~~l~ 403 (1165)
T PRK09193 396 KA-IARRLL 403 (1165)
T ss_pred HH-HHHHhh
Confidence 88 766654
No 52
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.27 E-value=5.5e-10 Score=122.23 Aligned_cols=303 Identities=14% Similarity=0.052 Sum_probs=184.1
Q ss_pred cccHHHHHHHHHHHHHhhCCc--EE---EEecCCCCccccc--ccchhHHHH---h-CCCceeechhhHHHH--------
Q 017714 36 QMMVREALNSALDEEMSADPK--VF---LMGEEVGEYQGAY--KISKGLLEK---Y-GPERVLDTPITEAGF-------- 96 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~--vv---~l~aDl~~~~g~~--~~~~~~~~~---~-~p~R~i~~GIaE~~~-------- 96 (367)
-++-.+|+...+..-.+.|-. +- +++ .+-|+- .+...|.+. . ..+-+|+.|+.|.-+
T Consensus 30 ~l~G~qAlvR~~l~q~~~D~~aGl~tag~vs----gYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq 105 (1186)
T PRK13029 30 YISGTQALVRLPLLQRARDRRAGLNTAGFIS----GYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQ 105 (1186)
T ss_pred eecHHHHHHHHHHHHhHHHHHcCCCccceEE----ecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhh
Confidence 478889998887443333321 11 222 122331 112233321 1 023788999999999
Q ss_pred -HHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCC-CCCCchhHHH-HHHhcC
Q 017714 97 -TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VGAQHSHCYA-AWYASV 173 (367)
Q Consensus 97 -vg~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~G~tH~~~~~-a~~~~i 173 (367)
+.++.|.+..|.+.+++.- ...+.|+-|-+++... ++...+--++++..|-+... .-..| |+.. .....|
T Consensus 106 ~~e~~~~a~~dGv~~lwygK-~pGvn~aaD~l~h~n~-----~gt~~~GGvv~v~gDDpg~~SSq~eq-dSr~~~~~a~i 178 (1186)
T PRK13029 106 QLELDPGAKRDGVFGMWYGK-GPGVDRSGDALRHANL-----AGTSPLGGVLVLAGDDHGAKSSSVAH-QSDHTFIAWGI 178 (1186)
T ss_pred hcccccceeeccceEEEecC-cCCcccchhHHHHhhc-----cccCCCCcEEEEEecCCCCccccCHH-HHHHHHHHcCC
Confidence 6677777788999999875 6789999999986442 12234555666543322100 00112 3322 344445
Q ss_pred CCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEeccccccCCC--C-----CccccccCCCccc---------------
Q 017714 174 PGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGES--F-----PVSAEVLDSSFCL--------------- 227 (367)
Q Consensus 174 P~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~~~~~~~--~-----~~~~~~~~~~~~~--------------- 227 (367)
| |+.|+|++|++++.++++. +..||.++.....-+.. + +.....+ .++..
T Consensus 179 P---vl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p-~~f~~~~~g~~~r~~~~p~~ 254 (1186)
T PRK13029 179 P---VLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLP-DDFVLPPGGLHIRWPDDPLA 254 (1186)
T ss_pred c---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCc-ccccCCccccccccCCCcHH
Confidence 5 9999999999999999986 47799998532111100 0 0000000 00100
Q ss_pred --------------------cCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCc--------eEEEEeeecCCCC
Q 017714 228 --------------------PIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS--------AEVINLRSIRPLD 279 (367)
Q Consensus 228 --------------------~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~--------v~vi~~~~i~P~d 279 (367)
++.+..+-.++.++.|||+|.....+++|.+.| |++ +.|+.+-+.+|||
T Consensus 255 ~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~~~~~~gi~ilKvgm~~PL~ 331 (1186)
T PRK13029 255 QEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDATCAALGIRLLKVGCVWPLD 331 (1186)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChhhccccCCCEEEeCCCCCCC
Confidence 111111112247899999999999999987766 554 8999999999999
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCC----C----CCCH-HHHHHHhCCCHH
Q 017714 280 RSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV----P----MPYA-ANLERMAVPQVL 350 (367)
Q Consensus 280 ~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~----~----~~~~-~~l~~~~~l~~~ 350 (367)
.+.+.+.++..+.|+||||-... +-.+|.+.+.+.. ...+...+|..|. . .+.+ ..+-....||++
T Consensus 332 ~~~i~~Fa~g~d~vlVVEE~~p~--iE~qlk~~l~~~~---~~~rp~v~GK~~~~~~~~~~~~~~~g~~llp~~gEL~p~ 406 (1186)
T PRK13029 332 PQSVREFAQGLEEVLVVEEKRAV--IEYQLKEELYNWR---EDVRPAIFGKFDHRDGAGGEWSVPAGRWLLPAHAELSPA 406 (1186)
T ss_pred HHHHHHHHhcCCEEEEEecCchH--HHHHHHHHHhhcc---CCcCCeeEecccccccccccccccccCCCCCcccCcCHH
Confidence 99999999999999999998653 6677777776542 2232345677650 0 0000 112223468999
Q ss_pred HHHHHHHHHHhh
Q 017714 351 CFLYDSSIDGCY 362 (367)
Q Consensus 351 ~I~~~~i~~~l~ 362 (367)
.|.+. +.+.|.
T Consensus 407 ~va~~-l~~~l~ 417 (1186)
T PRK13029 407 LIAKA-IARRLA 417 (1186)
T ss_pred HHHHH-HHHHHH
Confidence 99988 766664
No 53
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.25 E-value=1.2e-10 Score=100.47 Aligned_cols=118 Identities=29% Similarity=0.328 Sum_probs=87.5
Q ss_pred HHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCC
Q 017714 79 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAG 157 (367)
Q Consensus 79 ~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g 157 (367)
++. +++.+..++.|++++++|.|+|+.|.+|++.+.+..++..+++++. +++. .++||+++..+ +....
T Consensus 31 ~~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~--------~~~Pvl~i~~~~~~~~~ 100 (154)
T cd06586 31 REG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAA--------EHLPVVFLIGARGISAQ 100 (154)
T ss_pred hcc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHh--------cCCCEEEEeCCCChhhh
Confidence 345 7999999999999999999999998888888775667789999998 4543 58999999754 33222
Q ss_pred CCCCc-hhHHHHHHhcCCCcEEEeeCCHHHHHHHH---HHhHcCCCcEEEecc
Q 017714 158 VGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLL---KAAIRDPDPVVFLEN 206 (367)
Q Consensus 158 ~G~tH-~~~~~a~~~~iP~~~V~~P~d~~e~~~~~---~~a~~~~~Pv~ir~~ 206 (367)
.+.+| .+.+.++++.+|++.+..|++.++...+. +.+...++|++|+.+
T Consensus 101 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 101 AKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred ccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 34444 33445899999999998887765554433 333345789999754
No 54
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.17 E-value=4.7e-09 Score=111.19 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=197.6
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCccccccc----------------chhHHHHhCCCceeechhhHHHHHH
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI----------------SKGLLEKYGPERVLDTPITEAGFTG 98 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~----------------~~~~~~~~~p~R~i~~GIaE~~~vg 98 (367)
..+.|.-+=--++-.|+.+...|-+.+.|..+ |+|.= ...|.+..++--++|..++|-+++|
T Consensus 885 g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrR--GTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~G 962 (1228)
T PRK12270 885 GGIDWAFGELLAFGSLLLEGTPVRLSGQDSRR--GTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMG 962 (1228)
T ss_pred CCccHHHHHHHHHHHHHhcCceeeeeccccCC--cceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhc
Confidence 45666554445666788888889999998864 45431 0112222222346789999999999
Q ss_pred HHHHHhccC--CeeEEecccccHH---HHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchh-HHHHHH--
Q 017714 99 IGVGAAYYG--LKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWY-- 170 (367)
Q Consensus 99 ~AaGlA~~G--~~p~~~~~~~~f~---~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~-~~~a~~-- 170 (367)
+-+|.|.+. ..++++-+|.+|. |-..|++..+ +..+| .|.-.||+..|+|+ .|.||-||. -+|.++
T Consensus 963 FEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss-~e~KW----gQ~S~vvlLLPHGy-EGQGPdHSSaRiERfLql 1036 (1228)
T PRK12270 963 FEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISS-GEAKW----GQRSGVVLLLPHGY-EGQGPDHSSARIERFLQL 1036 (1228)
T ss_pred cceeeecCCCcceeeehhhhcccccchHHHHHHHHhh-hHhhh----ccccceEEEccCCc-CCCCCCcchHHHHHHHHh
Confidence 999999985 6788888888886 6778987644 45555 37888999999875 478999975 567665
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHhHc--CCCcEEEeccccccCCCCCccccccCCCccccCCcEE-Eee------e-CCc
Q 017714 171 ASVPGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IER------E-GKD 240 (367)
Q Consensus 171 ~~iP~~~V~~P~d~~e~~~~~~~a~~--~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~-v~~------~-g~d 240 (367)
+.-.||+|..|++|...+.++++-.. ...|.+++.||.+.+.+-..+. -++ |.-|+.+ |+. . .-+
T Consensus 1037 cAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~---ved--FT~g~F~pVi~D~~~~~~~~V~ 1111 (1228)
T PRK12270 1037 CAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSD---VED--FTEGKFRPVIDDPTVDDGAKVR 1111 (1228)
T ss_pred hccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCC---HHH--hccCCceecCCCCCCCCcccee
Confidence 55679999999999999999987554 3689999999987765422211 012 1233333 221 1 135
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC---eEEEEeCCCCCCchHHHHHHHHHHhc
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEES 317 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~---~ivvvEe~~~~GGlg~~v~~~l~~~~ 317 (367)
-+|+|+|-.....+++.++ ...-++.+|.+..|+|||.+.|.+.+.++. .++.|.|...+=|-...++-.|.+..
T Consensus 1112 RVlLcSGKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~~~l 1189 (1228)
T PRK12270 1112 RVLLCSGKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLPELL 1189 (1228)
T ss_pred EEEEEcchhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCchhhhhhhHhhc
Confidence 6789999999887765433 224579999999999999999999988764 35666555444444455665555431
Q ss_pred cCCCCCCeEEEecCCCCCCC
Q 017714 318 FGYLDAPVERIAGADVPMPY 337 (367)
Q Consensus 318 ~~~~~~~v~~ig~~d~~~~~ 337 (367)
- ...++++++.+..-.|.
T Consensus 1190 ~--~~~~lr~VsRpasasPA 1207 (1228)
T PRK12270 1190 P--DGRRLRRVSRPASASPA 1207 (1228)
T ss_pred c--CCCCceEecCCcccCCC
Confidence 0 14678999998866654
No 55
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.7e-09 Score=110.78 Aligned_cols=264 Identities=16% Similarity=0.180 Sum_probs=163.0
Q ss_pred ChhhhhhhhhccCCCCccccc--c---ccccccccccccc-----cccHHHHHHHHHHHHHhhCCc-EEEEecCCCCccc
Q 017714 1 MWGIIRQKVAAGGGSPVARIR--P---VVSNLRNYSSAVK-----QMMVREALNSALDEEMSADPK-VFLMGEEVGEYQG 69 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~-----~~~~r~a~~~~L~~l~~~d~~-vv~l~aDl~~~~g 69 (367)
.|++.+|+.+|.|+.|.+-.. | .....+.|..+-. +..-..+.++-+.++++.|++ ..+.++|-.+|++
T Consensus 355 ~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNr 434 (793)
T COG3957 355 LRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTAESTTALGRFLRDVMKLNPDNFRVFGPDETASNR 434 (793)
T ss_pred HHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccchhhHHHHHHHHHHHHhcCccceEeeCCCcchhhh
Confidence 389999999999999999766 2 2222444444322 233477899999999999988 9999999876655
Q ss_pred ccccchhHHHH------------hCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhc---
Q 017714 70 AYKISKGLLEK------------YGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS--- 134 (367)
Q Consensus 70 ~~~~~~~~~~~------------~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~--- 134 (367)
..++.+..... -+..|+++ .++|+.+.|.+.|+++.|-+-++++|-+| + +..|.+.|+.+++
T Consensus 435 l~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtGr~glf~sYEaF-~-~iv~sm~nQh~kwl~v 511 (793)
T COG3957 435 LGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTGRHGLFASYEAF-A-HIVDSMFNQHAKWLKV 511 (793)
T ss_pred hHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcCCccceeeHHHH-H-HHHHHHHhhhHHHHHH
Confidence 43332222111 11468888 59999999999999999999999987554 3 2233333333332
Q ss_pred ----cccCCCCccccEEEEeCCCCCCC-CCCCchh-HHH-HHHhcCC-CcEEEeeCCHHHHHHHHHHhHcCCCcEEE-ec
Q 017714 135 ----NYMSSGQISVPIVFRGPNGAAAG-VGAQHSH-CYA-AWYASVP-GLKVLSPYSSEDARGLLKAAIRDPDPVVF-LE 205 (367)
Q Consensus 135 ----~~~~~~~~~~pvv~~~~~G~~~g-~G~tH~~-~~~-a~~~~iP-~~~V~~P~d~~e~~~~~~~a~~~~~Pv~i-r~ 205 (367)
.|+.. -..++.++. ++---.+ +|-||+. .++ .+....+ .+.|+.|.|++-+..++.++++..+-+.+ ..
T Consensus 512 ~~e~~wr~~-~~Sln~l~T-S~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa 589 (793)
T COG3957 512 TREVEWRRP-IPSLNYLLT-SHVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVA 589 (793)
T ss_pred HHhcccCCC-CCcccceee-hhhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchhhhhhHHhhccCceEEEEe
Confidence 12110 011222222 1112234 7889954 344 3444444 57899999999999999999997554333 23
Q ss_pred cccccCCCCCccccccCCCccccCCc--EEEee-e--CCcEEEEEechh-HHHHHHHHHHHHhcC--CceEEEEee
Q 017714 206 NELLYGESFPVSAEVLDSSFCLPIGK--AKIER-E--GKDVTITAFSKI-VGLSLKAAEILAKEG--ISAEVINLR 273 (367)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Gk--~~v~~-~--g~di~Iia~G~~-v~~al~Aa~~L~~~G--i~v~vi~~~ 273 (367)
+|......+.+. .......-|- +++.. + ..|+++.+.|.+ +.++++|+..|++++ ++++||++.
T Consensus 590 ~K~p~pq~~t~~----qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVv 661 (793)
T COG3957 590 SKQPRPQWLTME----QAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPELRVRVVNVV 661 (793)
T ss_pred cCCCcceeecHH----HHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhCccceEEEEEEe
Confidence 332100000000 0001111221 22222 1 247999999975 489999999999998 777666543
No 56
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.91 E-value=1.3e-08 Score=101.48 Aligned_cols=290 Identities=18% Similarity=0.221 Sum_probs=194.0
Q ss_pred cccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhH-HHH-------------hCCCc---eeechhhHHHH
Q 017714 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGL-LEK-------------YGPER---VLDTPITEAGF 96 (367)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~-~~~-------------~~p~R---~i~~GIaE~~~ 96 (367)
|.++.|..|-+-++-.++.+..+|-+-+.|+++ |+|+-.... -++ -+.+. +-|..++|.+.
T Consensus 561 G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR--GTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAv 638 (913)
T KOG0451|consen 561 GVKIDWATAEALAIGSLLYQGHNVRISGQDVGR--GTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAV 638 (913)
T ss_pred CCccchHHHHHHHHHHHHhccCceeeeccccCc--ccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhh
Confidence 457889999999999999999999999999986 555310000 000 00122 33567899999
Q ss_pred HHHHHHHhccC--CeeEEecccccHHHHH---HHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHH-HHHH
Q 017714 97 TGIGVGAAYYG--LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAWY 170 (367)
Q Consensus 97 vg~AaGlA~~G--~~p~~~~~~~~f~~ra---~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~-~a~~ 170 (367)
+|+-.|||... ..++++.++.+|.+-| +|-+.. -+..+|| ..-.+|+..++|+. |-|+.||.|- |.++
T Consensus 639 LGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~-sgE~KWl----~ssglvmLLPHGyD-GAgpeHSSCRiERFL 712 (913)
T KOG0451|consen 639 LGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIV-SGETKWL----ESSGLVMLLPHGYD-GAGPEHSSCRIERFL 712 (913)
T ss_pred hhhhcccccCCcccceeehhhhcccccCceEEEeeeec-ccchhhh----hhCCeEEEccCCcC-CCCCccchhhHHHHH
Confidence 99999999995 5689998888876533 233222 2344565 34567788787764 4588897654 4555
Q ss_pred hc-----------CCCcEEEeeCCHHHHHHHHHHhH--cCCCcEEEeccccccCCCCCcc---ccccCCCccccCCcEEE
Q 017714 171 AS-----------VPGLKVLSPYSSEDARGLLKAAI--RDPDPVVFLENELLYGESFPVS---AEVLDSSFCLPIGKAKI 234 (367)
Q Consensus 171 ~~-----------iP~~~V~~P~d~~e~~~~~~~a~--~~~~Pv~ir~~~~~~~~~~~~~---~~~~~~~~~~~~Gk~~v 234 (367)
.. --||.|.-|.+|.+.+.+++.-+ +++.|.++..+|.+.+..-..+ .-.|...|.-.+|....
T Consensus 713 QlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~~ 792 (913)
T KOG0451|consen 713 QLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTIA 792 (913)
T ss_pred HHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCcccccccccccc
Confidence 32 23899999999999999998655 4689999998887664321000 00122233323443311
Q ss_pred eeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC----eEEEEeCCCCCCchHHHHH
Q 017714 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN----RLVTVEEGFPQHGVGAEIC 310 (367)
Q Consensus 235 ~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~----~ivvvEe~~~~GGlg~~v~ 310 (367)
--+.-+-+|+++|--.....++.+++..+. .+.++.+.+|-|||.+.|...+++++ .|..=||+...|-| +.|.
T Consensus 793 ~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaW-sFVr 870 (913)
T KOG0451|consen 793 KPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAW-SFVR 870 (913)
T ss_pred ChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcc-eeec
Confidence 112346789999998888777777665443 48999999999999999988888875 46777887766654 4444
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCCCC
Q 017714 311 ASVIEESFGYLDAPVERIAGADVPMPY 337 (367)
Q Consensus 311 ~~l~~~~~~~~~~~v~~ig~~d~~~~~ 337 (367)
-.. ++. +..+++..|.+.-+.|.
T Consensus 871 PRF-En~---lg~~L~~~GRpelp~pA 893 (913)
T KOG0451|consen 871 PRF-ENL---LGQQLHYCGRPELPTPA 893 (913)
T ss_pred hHH-HHH---hhhhheecCCCCCCCcc
Confidence 333 222 34567777777766664
No 57
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.77 E-value=2.2e-07 Score=94.98 Aligned_cols=286 Identities=17% Similarity=0.166 Sum_probs=189.2
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccch-----------------hHHHHhCCCceeechhhHHHHHHH
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISK-----------------GLLEKYGPERVLDTPITEAGFTGI 99 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~-----------------~~~~~~~p~R~i~~GIaE~~~vg~ 99 (367)
+.|.-+-+-+.-.|+++.-.|-+-+.|+.+ |+|+--. .+.....|--+-|..++|-+.+|+
T Consensus 649 iDwal~EalAFgsLl~EG~hVRlSGQDVER--GTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGF 726 (1017)
T KOG0450|consen 649 VDWALAEALAFGSLLKEGIHVRLSGQDVER--GTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGF 726 (1017)
T ss_pred cchHHHHHHHHHHHHhcCceEEeecccccc--cccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecc
Confidence 445444455566788889999999999975 5654111 111111133456788999999999
Q ss_pred HHHHhcc--CCeeEEecccccHH---HHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchh-HHHHHHhc-
Q 017714 100 GVGAAYY--GLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYAS- 172 (367)
Q Consensus 100 AaGlA~~--G~~p~~~~~~~~f~---~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~-~~~a~~~~- 172 (367)
-.|.|++ ...++++.++.+|. |..+||++- .+..+|. ....+|+..|+|. .|.||.||. -.|.++..
T Consensus 727 ElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFIs-sGqaKW~----rqsGlVllLPHGy-eG~GPEHSSaR~ERfLQm~ 800 (1017)
T KOG0450|consen 727 ELGYSMASPNALVLWEAQFGDFANTAQCIIDQFIS-SGQAKWV----RQSGLVLLLPHGY-EGMGPEHSSARPERFLQMS 800 (1017)
T ss_pred eecccccCCCceEEeehhhccccccchhhHHhHhc-cchhhhh----hhcCeEEEccCCc-CCCCcccccccHHHHHHhc
Confidence 9999998 57889999888885 688999763 4455564 5678888888875 478999964 33433311
Q ss_pred -------------------CCCcEEEeeCCHHHHHHHHHHhHc--CCCcEEEeccccccCCCCCccc-cccCCCccc---
Q 017714 173 -------------------VPGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVSA-EVLDSSFCL--- 227 (367)
Q Consensus 173 -------------------iP~~~V~~P~d~~e~~~~~~~a~~--~~~Pv~ir~~~~~~~~~~~~~~-~~~~~~~~~--- 227 (367)
.=||+|+.+++|...+.+++.-+- .+.|.+|+.+|.+.+++...+. ...++...|
T Consensus 801 nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~v 880 (1017)
T KOG0450|consen 801 NDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRV 880 (1017)
T ss_pred cCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCcee
Confidence 238999999999999999987664 5899999999988765321110 000111111
Q ss_pred --cCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC--eEEEE-eCCCCC
Q 017714 228 --PIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTV-EEGFPQ 302 (367)
Q Consensus 228 --~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~--~ivvv-Ee~~~~ 302 (367)
+-|+...-.++-+-+|+++|.......++.+.... --++.+..+..|.|||.+.+.+.++++. .|+.. |||-..
T Consensus 881 i~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~Nm 959 (1017)
T KOG0450|consen 881 IPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNM 959 (1017)
T ss_pred ccccccccCChhhceEEEEecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhccc
Confidence 12333322356677899999888776666555432 2379999999999999999999999886 45555 666555
Q ss_pred CchHHHHHHHHHHhccCCCCCCeEEEecCCC
Q 017714 303 HGVGAEICASVIEESFGYLDAPVERIAGADV 333 (367)
Q Consensus 303 GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~ 333 (367)
|+| +.+.-.+.... ..+..++...|....
T Consensus 960 G~w-~Yv~PRl~T~l-~~~~r~v~Y~GR~Ps 988 (1017)
T KOG0450|consen 960 GAW-DYVEPRLRTAL-KRLARPVKYAGRLPS 988 (1017)
T ss_pred Cch-hhcchHHHHHH-HhhCCcceecccCCc
Confidence 554 44443332210 112346666666543
No 58
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.69 E-value=7.5e-08 Score=89.10 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=73.8
Q ss_pred eeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCCCCCCCc-
Q 017714 86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGVGAQH- 162 (367)
Q Consensus 86 ~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~g~G~tH- 162 (367)
.+-...+|.++++++.|+|++|.|.++.|. +..+..+.|.|-. ++. .++|+|++.. .|++.| +++|
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts-~~Gl~lm~e~l~~-a~~--------~~~P~V~~~~~R~g~~~g-~~~~~ 106 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATS-GPGLNLMAEPLYW-AAG--------TELPIVIVVVQRAGPSPG-LSTQP 106 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEE-CCHHHHHCCCHHH-HHH--------TT--EEEEEEEB---SSS-B--SB
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeec-CCcccccHhHHHH-HHH--------cCCCEEEEEEECCCCCCC-CcCcC
Confidence 344458999999999999999999999997 5566677888754 333 5899988864 344443 2333
Q ss_pred hhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEecccc
Q 017714 163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL 208 (367)
Q Consensus 163 ~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~~ 208 (367)
.|.|. ++...-++.++.|+|+||++++...|++ +..||+++.+..
T Consensus 107 ~q~D~-~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 107 EQDDL-MAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp -SHHH-HHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred ChhHH-HHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 34444 4444668999999999999999999886 488999986543
No 59
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.47 E-value=1.4e-06 Score=92.58 Aligned_cols=287 Identities=17% Similarity=0.204 Sum_probs=178.7
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccc----------------hhHHHHhCCCceeechhhHHHHHHH
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS----------------KGLLEKYGPERVLDTPITEAGFTGI 99 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~----------------~~~~~~~~p~R~i~~GIaE~~~vg~ 99 (367)
.+.|..|-.-+...++.....+.+-+.|..+ |+|.-. ..+....+.=..+|.+.+|.+++++
T Consensus 565 ~iDW~~aE~LAfatll~eG~~iRlsGqDs~R--GTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgF 642 (906)
T COG0567 565 GIDWGMAETLAFATLLDEGHPIRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGF 642 (906)
T ss_pred ccchhHHHHhcccceeccCCccccccccCCC--cCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhh
Confidence 3455555555555666677788888888864 444310 1112121223567899999999999
Q ss_pred HHHHhccCC--eeEEecccccHH---HHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchh-HHHHHHhc-
Q 017714 100 GVGAAYYGL--KPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYAS- 172 (367)
Q Consensus 100 AaGlA~~G~--~p~~~~~~~~f~---~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~-~~~a~~~~- 172 (367)
=.|.|..-. ..+++-++.+|. |..+||... .+..+| .....+|+..++|+ -|.|+.||. .++.++..
T Consensus 643 EYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfis-Sge~KW----~r~sgLv~lLPHgy-EGQGPEHSSaRlER~LQLc 716 (906)
T COG0567 643 EYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFIS-SGEQKW----GRMSGLVMLLPHGY-EGQGPEHSSARLERFLQLC 716 (906)
T ss_pred hhhhhhcCCchhhhhhhhhcccccCCeeeeccccc-cHHHHH----HHhcCceEEccCCC-CCCCCcCccchhHHHHHhh
Confidence 999999854 466777777776 577888764 334445 25667888888764 467999975 56776654
Q ss_pred -CCCcEEEeeCCHHHHHHHHHHhHc--CCCcEEEeccccccCCCCCccc--cccCCCccccCCcEEEeeeCCcEEEEEec
Q 017714 173 -VPGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKIEREGKDVTITAFS 247 (367)
Q Consensus 173 -iP~~~V~~P~d~~e~~~~~~~a~~--~~~Pv~ir~~~~~~~~~~~~~~--~~~~~~~~~~~Gk~~v~~~g~di~Iia~G 247 (367)
--||+|+.|+++.+.+.+++.-+. ...|.+++.+|.+.+++.-++. +..+..+...++......+.-+-+++++|
T Consensus 717 aE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSG 796 (906)
T COG0567 717 AENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSG 796 (906)
T ss_pred HHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEeecc
Confidence 459999999999999999986554 3689999999887664321111 11011111011111011112356778888
Q ss_pred hhHHHHHHHHHHHHhcC-CceEEEEeeecCCCCHHHHHHHHhcC---CeEEEEe-CCCCCCchHHHHHHHHHHhccCCCC
Q 017714 248 KIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKT---NRLVTVE-EGFPQHGVGAEICASVIEESFGYLD 322 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~G-i~v~vi~~~~i~P~d~~~l~~~~~~~---~~ivvvE-e~~~~GGlg~~v~~~l~~~~~~~~~ 322 (367)
-+.....+.. ++.| .++-++.+..|.||+.+.+.+.++++ +.++.+- |-...|.|. .+...+.+- +. ..
T Consensus 797 Kvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~-~~~~~l~~~-l~-~~ 870 (906)
T COG0567 797 KVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY-YIQPHLEEV-LP-EG 870 (906)
T ss_pred chHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH-HHHHHHHHh-hc-cc
Confidence 8777665544 4444 48999999999999999999888876 2345544 444445553 344344321 10 01
Q ss_pred CCeEEEecCCCCCC
Q 017714 323 APVERIAGADVPMP 336 (367)
Q Consensus 323 ~~v~~ig~~d~~~~ 336 (367)
..+...|.+....|
T Consensus 871 ~~l~yagRp~saSp 884 (906)
T COG0567 871 DKLRYAGRPASASP 884 (906)
T ss_pred chhcccCCCcccCc
Confidence 23666666654444
No 60
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.62 E-value=0.0044 Score=53.69 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=75.8
Q ss_pred CCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCC---
Q 017714 83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG--- 159 (367)
Q Consensus 83 p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G--- 159 (367)
.=|++.+- .|++++.+|.|.++.|.+..+.+..+ .+..+.+.+.+... ...|++++.......+.+
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gp-G~~n~~~~l~~a~~---------~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGP-GLNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcc-hHHHHHHHHHHHHh---------CCCCEEEEEeeCCCCCCCCCC
Confidence 46788885 99999999999999998866666655 44557788765332 468999986532222222
Q ss_pred CCchhHHH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEec
Q 017714 160 AQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (367)
Q Consensus 160 ~tH~~~~~--a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~ 205 (367)
..| +... .+++. -..++.+.+++|+.++++.|++ .++|++++.
T Consensus 110 ~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PDQ-SDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cCc-HHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 123 3332 34433 5678889999999999888876 258999974
No 61
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.49 E-value=0.011 Score=51.90 Aligned_cols=151 Identities=11% Similarity=0.152 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhCC-cEEEEecCCCCccccccc---chh-HHHH-h--------CCCceeechhhHHHHHHHHHHHhcc
Q 017714 41 EALNSALDEEMSADP-KVFLMGEEVGEYQGAYKI---SKG-LLEK-Y--------GPERVLDTPITEAGFTGIGVGAAYY 106 (367)
Q Consensus 41 ~a~~~~L~~l~~~d~-~vv~l~aDl~~~~g~~~~---~~~-~~~~-~--------~p~R~i~~GIaE~~~vg~AaGlA~~ 106 (367)
.++++-|.++++.|| +.-++++|--.|.....+ ++. +..+ . .+++-+..-++|+.+.|...|..+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467888888888776 688999997666544322 111 1111 1 1223334449999999999999999
Q ss_pred CCeeEEecccccH--HHHHHHH----HHHHHhhccccCCCCccccE-EEE-eCCCCCCC-CCCCchhH-HH-HHHhcCC-
Q 017714 107 GLKPVVEFMTFNF--SMQAIDH----IINSAAKSNYMSSGQISVPI-VFR-GPNGAAAG-VGAQHSHC-YA-AWYASVP- 174 (367)
Q Consensus 107 G~~p~~~~~~~~f--~~ra~dq----i~~~~a~~~~~~~~~~~~pv-v~~-~~~G~~~g-~G~tH~~~-~~-a~~~~iP- 174 (367)
|-.-++.+|-+|. ..-++.| +++. ....|+ .+.|- -++ .+..-..+ .|-||+.+ ++ .++...|
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~-~~~~wR----~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~ 156 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHA-RELPWR----APIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPD 156 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHH-HH-TTS-------B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHH-HhCcCC----CCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcc
Confidence 9999998876654 1222222 2221 122333 34442 222 22333334 78899542 33 5665555
Q ss_pred CcEEEeeCCHHHHHHHHHHhHc
Q 017714 175 GLKVLSPYSSEDARGLLKAAIR 196 (367)
Q Consensus 175 ~~~V~~P~d~~e~~~~~~~a~~ 196 (367)
-+.||.|.|++-+..+++.+++
T Consensus 157 ~~RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 157 VVRVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp -EEEEE-SSHHHHHHHHHHHHH
T ss_pred cceeecCCcHhHHHHHHHHHhc
Confidence 5789999999999999998875
No 62
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.42 E-value=0.0017 Score=55.92 Aligned_cols=111 Identities=23% Similarity=0.200 Sum_probs=73.8
Q ss_pred CceeechhhHHHHHHHHHHHhccCCe-eEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCC-C
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q 161 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~-p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t 161 (367)
=|++.+ ..|++++.+|.|.++.+.| +++.+.....+..++..|.+... .++|++++.........+. +
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~---------~~~Pll~i~~~~~~~~~~~~~ 104 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYL---------DSIPLLVITGQRPTAGEGRGA 104 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHh---------hCCCEEEEeCCCccccccCCc
Confidence 567777 6999999999999999654 44443324445566677765332 5899999865422222222 2
Q ss_pred chhHHH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C-CCcEEEec
Q 017714 162 HSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLE 205 (367)
Q Consensus 162 H~~~~~-a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~-~~Pv~ir~ 205 (367)
|+..+. .+++.+-.+ .+...+++++...+..|++ . ++|++|..
T Consensus 105 ~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 105 FQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 322333 677777655 6677888999888888876 2 57999964
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.82 E-value=0.02 Score=50.37 Aligned_cols=155 Identities=23% Similarity=0.193 Sum_probs=87.2
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~ 116 (367)
|+..+++.+.|.+.. -..++.+-. .. ...+.+.+.+.- -=|++.+ -.|++++.+|.|.++.+.+|-+++..
T Consensus 1 mt~~~~l~~~L~~~G--v~~vfgvpG-~~----~~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~ 71 (172)
T PF02776_consen 1 MTGAEALAEALKANG--VTHVFGVPG-SG----NLPLLDALEKSP-GIRFIPV-RHEQGAAFMADGYARATGRPGVVIVT 71 (172)
T ss_dssp EEHHHHHHHHHHHTT---SEEEEE---GG----GHHHHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEE
T ss_pred CcHHHHHHHHHHHCC--CeEEEEEeC-hh----HhHHHHHhhhhc-ceeeecc-cCcchhHHHHHHHHHhhccceEEEee
Confidence 356667777776532 122333322 11 112333444332 2478887 79999999999999986666444332
Q ss_pred c-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCC--CCCCCCCCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHH
Q 017714 117 F-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG--AAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLK 192 (367)
Q Consensus 117 ~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G--~~~g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~ 192 (367)
+ ..+.-+..-+.+ ++. .+.|++++...- ...+.+..|...+ ..+++.+-.+ .+.+.++.++...++
T Consensus 72 ~GpG~~n~~~~l~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~ 141 (172)
T PF02776_consen 72 SGPGATNALTGLAN--AYA-------DRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALD 141 (172)
T ss_dssp TTHHHHTTHHHHHH--HHH-------TT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHH
T ss_pred cccchHHHHHHHhh--ccc-------ceeeEEEEecccchhhhcccccccchhhcchhccccch-hcccCCHHHHHHHHH
Confidence 2 233333444433 222 588999986432 2223455552233 3788887644 666677777666666
Q ss_pred HhHc-----CCCcEEEecccccc
Q 017714 193 AAIR-----DPDPVVFLENELLY 210 (367)
Q Consensus 193 ~a~~-----~~~Pv~ir~~~~~~ 210 (367)
.|++ .++|++|..+..+.
T Consensus 142 ~A~~~a~~~~~gPv~l~ip~dv~ 164 (172)
T PF02776_consen 142 RAFRAATSGRPGPVYLEIPQDVQ 164 (172)
T ss_dssp HHHHHHHHCSTSEEEEEEEHHHH
T ss_pred HHHHHhccCCCccEEEEcChhHh
Confidence 6654 58999998765543
No 64
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.48 E-value=0.022 Score=56.34 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=76.9
Q ss_pred HhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCC-
Q 017714 80 KYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (367)
Q Consensus 80 ~~~p~R~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~- 156 (367)
+.++.|++-+ -.|..++++|+|+.++ |.+|++.++.|.+- -+...+. ++.-. . -.++|++++.. .|...
T Consensus 23 ~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlG-n~vN~l~-SL~~~-~----~y~iP~l~~i~~RG~~g~ 94 (361)
T TIGR03297 23 NNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLG-NAVNPLT-SLADT-E----VYDIPLLLIVGWRGEPGV 94 (361)
T ss_pred cCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchh-hhhhHHH-hhccc-c----ccCcCeeEEEecCCCCCC
Confidence 4423467766 5899999999999999 99999999866544 3445442 22100 0 14789888765 45332
Q ss_pred CCCCCch-h--HHHHHHhcCCCcEEEee-CCHHHHHHHHH----HhHcCCCcEEEecccccc
Q 017714 157 GVGAQHS-H--CYAAWYASVPGLKVLSP-YSSEDARGLLK----AAIRDPDPVVFLENELLY 210 (367)
Q Consensus 157 g~G~tH~-~--~~~a~~~~iP~~~V~~P-~d~~e~~~~~~----~a~~~~~Pv~ir~~~~~~ 210 (367)
.+-++|. | ....++..+ ++..... .+..|....+. .+++.+.|+.+...+..+
T Consensus 95 ~depqh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 95 HDEPQHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CCCchhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 3567773 2 224777764 3333333 55656555444 455568999998776544
No 65
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=96.29 E-value=0.21 Score=51.95 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCC--ceeechhhHHHHHHHHHHHhccCCeeEEe-
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE--RVLDTPITEAGFTGIGVGAAYYGLKPVVE- 113 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~--R~i~~GIaE~~~vg~AaGlA~~G~~p~~~- 113 (367)
++..+++.+.|.+. +=+.++.-+ + +.. ..|.+.+ ++ ||+.+ -.|++++.+|.|.|+..-+|-++
T Consensus 12 ~~~a~~l~~~L~~~---GV~~vFgiP--G---~~~---~~l~dal-~~~i~~i~~-~hE~~A~~~Adgyar~tg~~~v~~ 78 (530)
T PRK07092 12 TTVRDATIDLLRRF---GITTVFGNP--G---STE---LPFLRDF-PDDFRYVLG-LQEAVVVGMADGYAQATGNAAFVN 78 (530)
T ss_pred CcHHHHHHHHHHHc---CCCEEEeCC--C---Ccc---hHHHHHH-hhcCCEEEE-ccHHHHHHHHHHHHHHhCCceEEE
Confidence 45666666666542 334343322 2 111 2455554 33 78876 79999999999999975555443
Q ss_pred -cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCCCchhHH-HHHHhcCCCcEEEeeCCHHHHHH
Q 017714 114 -FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARG 189 (367)
Q Consensus 114 -~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~ 189 (367)
+..+..+ -++.-|.+.. ..+.||+++....... +.+..++..+ ..+++.+-.+.... .+++++..
T Consensus 79 vt~gpG~~-N~~~gia~A~---------~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v-~~~~~~~~ 147 (530)
T PRK07092 79 LHSAAGVG-NAMGNLFTAF---------KNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEP-ARAEDVPA 147 (530)
T ss_pred eccCchHH-HHHHHHHHHh---------hcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeec-CCHHHHHH
Confidence 3334333 4445544322 2689999886432222 2333321223 37888887665443 77888777
Q ss_pred HHHHhHc----C-CCcEEEeccccc
Q 017714 190 LLKAAIR----D-PDPVVFLENELL 209 (367)
Q Consensus 190 ~~~~a~~----~-~~Pv~ir~~~~~ 209 (367)
.++.|++ . ++||||-.+...
T Consensus 148 ~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 148 AIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred HHHHHHHHHhcCCCCcEEEEccHHH
Confidence 7777765 2 589999877543
No 66
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.16 E-value=0.044 Score=47.75 Aligned_cols=120 Identities=21% Similarity=0.246 Sum_probs=69.7
Q ss_pred hHHHHh-CCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCC-C
Q 017714 76 GLLEKY-GPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-G 153 (367)
Q Consensus 76 ~~~~~~-~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G 153 (367)
.|.+.+ ..=||+- .-.|..++++|+|..+.|.+|.+++..+... -++.-+.... . ..++||+++... |
T Consensus 26 ~l~dal~~~i~~i~-~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~g-n~~~~l~~a~-~-------~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 26 NLLPLIEKDFRHIP-LTREEEGVGICAGAYLAGKKPAILMQSSGLG-NSINALASLN-K-------TYGIPLPILASWRG 95 (157)
T ss_pred HHHHHHHhCCcEEe-cCChHHHHHHHHHHHHhcCCcEEEEeCCcHH-HHHHHHHHHH-H-------cCCCCEEEEEeccC
Confidence 444444 1235552 3589999999999999999999888766644 4555543221 0 158999998642 3
Q ss_pred CCCCCCCCch-h-H-HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEeccc
Q 017714 154 AAAGVGAQHS-H-C-YAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENE 207 (367)
Q Consensus 154 ~~~g~G~tH~-~-~-~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~ 207 (367)
...-.-+.|. + . -+..+..+ ++......+++|+ ..++.|++ .++|++|...+
T Consensus 96 ~~~~~~~~q~~~g~~~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~ 154 (157)
T TIGR03845 96 VYKEKIPAQIPMGRATPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDP 154 (157)
T ss_pred CCCCCCccccchhhhhHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeC
Confidence 2110111110 1 1 12333332 3345666667777 77776664 57999997654
No 67
>PRK07586 hypothetical protein; Validated
Probab=96.09 E-value=0.28 Score=50.72 Aligned_cols=201 Identities=17% Similarity=0.054 Sum_probs=105.9
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeE-E-ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKPV-V-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p~-~-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
|++.+ -.|++++.+|.|.|+.-.+|- + .++.+..+ -++--+.+. + ..++||+++....... +.+.
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~-N~~~gl~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLA-NGLANLHNA--R-------RARTPIVNIVGDHATYHRKYDA 109 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHH-HHHHHHHHH--H-------hcCCCEEEEecCCchhccCCCc
Confidence 77777 799999999999999844443 3 35445443 344444432 2 2689999986432222 2222
Q ss_pred CchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C-CCcEEEeccccccCCCCCccccccCCCccccCCc---
Q 017714 161 QHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK--- 231 (367)
Q Consensus 161 tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~-~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk--- 231 (367)
.+ ..| ..+++.+--+ .....+++++...++.|++ . ++||||-.|........+................
T Consensus 110 ~q-~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v 187 (514)
T PRK07586 110 PL-TSDIEALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAV 187 (514)
T ss_pred cc-ccchhhhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHH
Confidence 22 223 3678777433 4556677777776666664 3 6899998776543221110000000000000000
Q ss_pred ---EEEeee-CCcEEEEEechhHHHHHHHHHHHHhc-CCceEEEE-------eeecCC-----CCHHHHHHHHhcCCeEE
Q 017714 232 ---AKIERE-GKDVTITAFSKIVGLSLKAAEILAKE-GISAEVIN-------LRSIRP-----LDRSTINASVRKTNRLV 294 (367)
Q Consensus 232 ---~~v~~~-g~di~Iia~G~~v~~al~Aa~~L~~~-Gi~v~vi~-------~~~i~P-----~d~~~l~~~~~~~~~iv 294 (367)
.+.+++ .+-++|+..|.....+.++..+|.++ |+-|-.-. -..+-| .-.+...+.+++.+.||
T Consensus 188 ~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl 267 (514)
T PRK07586 188 EAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLV 267 (514)
T ss_pred HHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEE
Confidence 112222 34566666666555666666666554 77653211 111112 11233445677788888
Q ss_pred EEeC
Q 017714 295 TVEE 298 (367)
Q Consensus 295 vvEe 298 (367)
.+--
T Consensus 268 ~vG~ 271 (514)
T PRK07586 268 LVGA 271 (514)
T ss_pred EECC
Confidence 7764
No 68
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=96.02 E-value=0.76 Score=48.05 Aligned_cols=114 Identities=18% Similarity=0.086 Sum_probs=72.3
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (367)
|++.+ -.|++++.+|.|.|+...+| ++.+..+..++ ++--|.+ |+ ..++||+++...... .+.+.
T Consensus 48 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N-~~~gi~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~ 116 (557)
T PRK08199 48 RVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATN-ASIGVHT--AF-------QDSTPMILFVGQVARDFREREA 116 (557)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHH-HHHHHHH--Hh-------hcCCCEEEEecCCccccCCCCc
Confidence 67777 79999999999999985554 33354454443 4444433 22 268999998643222 23333
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C-CCcEEEecccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY 210 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~-~~Pv~ir~~~~~~ 210 (367)
.|.....++++.+--+.. ...+++++...++.|++ . ++||+|..|..+.
T Consensus 117 ~q~~d~~~l~~~~tk~~~-~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~ 170 (557)
T PRK08199 117 FQEIDYRRMFGPMAKWVA-EIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVL 170 (557)
T ss_pred ccccCHHHhhhhhhceee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 332122378888765533 33678887777777765 2 5899998876544
No 69
>PRK12474 hypothetical protein; Provisional
Probab=95.93 E-value=1.2 Score=46.12 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=88.5
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhC--C-CceeechhhHHHHHHHHHHHhcc-CCee
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYG--P-ERVLDTPITEAGFTGIGVGAAYY-GLKP 110 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~--p-~R~i~~GIaE~~~vg~AaGlA~~-G~~p 110 (367)
.+++..+++.+.|.++. -+.|+.+-. +.. ..|.+... + =||+.+ -.|++++.+|-|.|+. |..-
T Consensus 3 ~~~~~~~~l~~~L~~~G--V~~vFGvpG------~~~---~~l~dal~~~~~i~~i~~-rhE~~A~~mAdgYaR~tg~~g 70 (518)
T PRK12474 3 QTMNGADSVVDTLLNCG--VEVCFANPG------TSE---MHFVAALDRVPRMRPVLC-LFEGVVTGAADGYGRIAGKPA 70 (518)
T ss_pred cCccHHHHHHHHHHHCC--CCEEEECCC------cch---HHHHHHhhccCCceEEEe-cchHHHHHHHHHHHHHhCCCE
Confidence 44566677777776532 233444322 111 23333331 1 278887 6999999999999987 5333
Q ss_pred E-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCCCchhHH-HHHHhcCCCcEEEeeCCHHH
Q 017714 111 V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCY-AAWYASVPGLKVLSPYSSED 186 (367)
Q Consensus 111 ~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e 186 (367)
+ +.|..+.++ -++--+.+. + .-.+||+++....... +.+. |++.+ .++++.+--+ .....++.+
T Consensus 71 v~~~t~GpG~~-N~~~gl~~A--~-------~d~~Pvl~i~G~~~~~~~~~~~-~q~~d~~~~~~~vtk~-~~~v~~~~~ 138 (518)
T PRK12474 71 VTLLHLGPGLA-NGLANLHNA--R-------RAASPIVNIVGDHAVEHLQYDA-PLTSDIDGFARPVSRW-VHRSASAGA 138 (518)
T ss_pred EEEEccchhHh-HhHHHHHHH--h-------hcCCCEEEEeccCchhhcCCCC-ccccCHHHhhhcccce-eeecCCHHH
Confidence 3 335445544 344444332 2 1689999886322211 2222 22333 3788877544 445688888
Q ss_pred HHHHHHHhHc-----CCCcEEEeccccc
Q 017714 187 ARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 187 ~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
+..+++.|++ .++||+|..|+.+
T Consensus 139 ~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 139 VDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 8888888875 2589999887654
No 70
>PRK08611 pyruvate oxidase; Provisional
Probab=95.88 E-value=0.41 Score=50.37 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=87.2
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCee--EEe
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP--VVE 113 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~ 113 (367)
+++..+++.+.|.+.. =+.++.+-.+- ...+.+.+.+.-..=||+.+ -.|++++.+|.|.|+.--+| ++.
T Consensus 3 ~~~~~~~l~~~L~~~G--V~~vFgipG~~-----~~~l~dal~~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~ 74 (576)
T PRK08611 3 KIKAGEALVKLLQDWG--IDHVYGIPGDS-----IDAVVDALRKEQDKIKFIQV-RHEEVAALAAAAYAKLTGKIGVCLS 74 (576)
T ss_pred CCcHHHHHHHHHHHcC--CCEEEecCCcc-----hHHHHHHHHhcCCCCeEEEe-CcHHHHHHHHHHHHHHhCCceEEEE
Confidence 3456666666665432 23344443211 11222334321111377776 79999999999999874444 334
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHH
Q 017714 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191 (367)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~ 191 (367)
|..+..++ ++.-+.+. + ..++||+++...-.. .+.+..|......+++.+--+ .....+++++...+
T Consensus 75 t~GPG~~N-~l~gla~A--~-------~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l 143 (576)
T PRK08611 75 IGGPGAIH-LLNGLYDA--K-------MDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVY-NHQIMSAENLPEIV 143 (576)
T ss_pred CCCCcHHH-HHHHHHHH--h-------hcCCCEEEEecCCcccccCCCCccccCHHHHhhcccce-eEEeCCHHHHHHHH
Confidence 45554443 44554332 2 268999998643222 233333322224788887544 34556777777766
Q ss_pred HHhHc----CCCcEEEeccccc
Q 017714 192 KAAIR----DPDPVVFLENELL 209 (367)
Q Consensus 192 ~~a~~----~~~Pv~ir~~~~~ 209 (367)
..|++ .++||+|-.|..+
T Consensus 144 ~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 144 NQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred HHHHHHHhhCCCCEEEEeChhh
Confidence 66554 5799999877654
No 71
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=95.80 E-value=0.33 Score=51.00 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=70.7
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~~-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
|++.+ -.|++++.+|.|.|+. |.-.++ .+..+.+++ ++--|.+. + ..++||+++...-... +.|.
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N-~~~gla~A--~-------~~~~Pvl~I~g~~~~~~~~~~~ 109 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTN-CVTAIAAA--Y-------WAHTPVVIVTPEAGTKTIGLGG 109 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHH-HHHHHHHH--h-------hcCCCEEEEeCCCccccCCCCC
Confidence 67777 6999999999999987 544443 455555544 44444332 2 1689999986432222 2232
Q ss_pred CchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEecccccc
Q 017714 161 QHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (367)
Q Consensus 161 tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~~~~ 210 (367)
|+..+ ..+++.+--+ .....++.++...++.|++ .++||||-.|+.+.
T Consensus 110 -~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 162 (579)
T TIGR03457 110 -FQEADQLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF 162 (579)
T ss_pred -CcccchhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence 42223 3788887543 4445677777776666654 46899998776543
No 72
>PRK08322 acetolactate synthase; Reviewed
Probab=95.73 E-value=0.16 Score=52.86 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=73.1
Q ss_pred CceeechhhHHHHHHHHHHHhccCCee-E-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ 161 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p-~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~t 161 (367)
=|++.+ ..|++++.+|.|.|+.-.+| + +.+..+.+++ ++.-|.+. + ..++||+++...-.....+..
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N-~~~~i~~A--~-------~~~~Pll~i~g~~~~~~~~~~ 107 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATN-LVTGVAYA--Q-------LGGMPMVAITGQKPIKRSKQG 107 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhH-HHHHHHHH--h-------hcCCCEEEEeccccccccCCC
Confidence 377777 79999999999999984444 3 3344454443 44554432 2 268999998643222211222
Q ss_pred chhH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEecccccc
Q 017714 162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (367)
Q Consensus 162 H~~~-~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~~ 210 (367)
+.|. | .++++.+--+ .+...+++++..+++.|++ .++||+|-.+..+.
T Consensus 108 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (547)
T PRK08322 108 SFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIA 162 (547)
T ss_pred ccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 2232 3 3788887643 5666788888888877775 25899998776543
No 73
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.69 E-value=0.17 Score=44.23 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=70.4
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
|++.+ -.|+++..+|-|.|+.--+| ++.+..+.++ -++--+.+... .++||+++..+.... +.+.
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~-n~~~~l~~A~~---------~~~Pvl~I~g~~~~~~~~~~~ 108 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAI-HLLNGLYDAKR---------DRAPVLAIAGQVPTDELGTDY 108 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHH-HHHHHHHHHHh---------cCCCEEEEecCCcccccCCCC
Confidence 66666 69999999999999984444 3334444443 34555544332 589999986543322 2233
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEeccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENE 207 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~ 207 (367)
.|......+++.+-.+ ...+.++.++...++.|++ .++||+|-.+.
T Consensus 109 ~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 109 FQEVDLLALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred CcccCHHHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 2211223788888765 5566688887777777664 46899996554
No 74
>PRK07524 hypothetical protein; Provisional
Probab=95.32 E-value=0.32 Score=50.60 Aligned_cols=113 Identities=21% Similarity=0.131 Sum_probs=73.0
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee-E-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCC--
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGV-- 158 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p-~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~-- 158 (367)
|++.+ -.|++++.+|-|.|+.-.+| + +.+..+..++ ++--|.+. + ..++||+++...-.. .+.
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n-~~~gi~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~ 109 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTN-IATAMGQA--Y-------ADSIPMLVISSVNRRASLGKGR 109 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHH-HHHHHHHH--H-------hcCCCEEEEeCCCChhhcCCCC
Confidence 77777 69999999999999885444 3 3455555544 44554432 2 268999998642221 122
Q ss_pred CCCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 159 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 159 G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
+..|+..| .++++.+-- ......+++++...++.|++ .++||+|-.|+.+
T Consensus 110 ~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 110 GKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred ccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 23342123 378888754 35667778888888777775 2689999877654
No 75
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.22 E-value=0.43 Score=41.39 Aligned_cols=143 Identities=15% Similarity=0.055 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHH
Q 017714 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120 (367)
Q Consensus 41 ~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~ 120 (367)
+.+-+.|.+.+ . +.+++. |.+.+ .. .-+.....|.+|+..| +=-..++.|.|++++-.+|++++. .+..
T Consensus 2 ~~~~~~l~~~l-~-d~~vv~--d~G~~----~~-~~~~~~~~~~~~~~~g-smG~~lp~AiGa~~a~~~~Vv~i~-GDG~ 70 (157)
T cd02001 2 IAAIAEIIEAS-G-DTPIVS--TTGYA----SR-ELYDVQDRDGHFYMLG-SMGLAGSIGLGLALGLSRKVIVVD-GDGS 70 (157)
T ss_pred HHHHHHHHHhC-C-CCEEEe--CCCHh----HH-HHHHhhcCCCCEEeec-chhhHHHHHHHHHhcCCCcEEEEE-CchH
Confidence 45556666665 2 344443 34421 11 1122323388998744 222334477888776557888775 4322
Q ss_pred -HHHHHHHHHHHhhccccCCCCc-cccEEEEeC-C-CCC-CCCCCCch-h-HHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 017714 121 -MQAIDHIINSAAKSNYMSSGQI-SVPIVFRGP-N-GAA-AGVGAQHS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (367)
Q Consensus 121 -~ra~dqi~~~~a~~~~~~~~~~-~~pvv~~~~-~-G~~-~g~G~tH~-~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~~ 193 (367)
+.....+ ..+.. . ++|++++.- + +.. .+...++. . .+..+..++ |+.-+...+++|+..++++
T Consensus 71 f~m~~~el-~t~~~--------~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~ 140 (157)
T cd02001 71 LLMNPGVL-LTAGE--------FTPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAG 140 (157)
T ss_pred HHhcccHH-HHHHH--------hcCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHH
Confidence 2222222 22222 3 478877653 3 221 11111221 2 223455554 5556677899999999999
Q ss_pred hHcCCCcEEEe
Q 017714 194 AIRDPDPVVFL 204 (367)
Q Consensus 194 a~~~~~Pv~ir 204 (367)
+++.++|.+|-
T Consensus 141 a~~~~gp~vi~ 151 (157)
T cd02001 141 LLATTGPTLLH 151 (157)
T ss_pred HHhCCCCEEEE
Confidence 99989999884
No 76
>PRK07064 hypothetical protein; Provisional
Probab=95.15 E-value=1.9 Score=44.90 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=71.2
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCC-
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG- 159 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G- 159 (367)
|++.+ ..|+++..+|.|.|+. |...+ +.+..+..++ ++.-|.+..+ .++||+++...-.. .+.+
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N-~~~~i~~A~~---------~~~Pvl~i~g~~~~~~~~~~~ 111 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGN-AAGALVEALT---------AGTPLLHITGQIETPYLDQDL 111 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHH-HHHHHHHHHh---------cCCCEEEEeCCCCcccccCCC
Confidence 77777 7999999999999987 53333 3455555544 4455543222 68999998642111 1222
Q ss_pred -CCchhH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C-CCcEEEeccccc
Q 017714 160 -AQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (367)
Q Consensus 160 -~tH~~~-~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~-~~Pv~ir~~~~~ 209 (367)
..| +. + ..+++.+--+ .+...+++++..+++.|++ . ++||||-.+...
T Consensus 112 ~~~~-~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 112 GYIH-EAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred cccc-cccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 234 42 3 4788887654 4445677777777766664 3 699999877543
No 77
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=95.11 E-value=0.66 Score=48.38 Aligned_cols=111 Identities=19% Similarity=0.102 Sum_probs=71.0
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee-E-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p-~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
|++.+ -.|++++.+|.|.|+.-.+| + +.|..+..++ ++--+.+. + ..++||+++....... +.+.
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n-~~~~l~~A--~-------~~~~Pvl~i~g~~~~~~~~~~~ 108 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATN-LITGLADA--L-------LDSVPVVAITGQVSSPLIGTDA 108 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHH-HHHHHHHH--h-------hcCCCEEEEecCCCccccCCCC
Confidence 67777 79999999999999984344 3 3355454443 44554432 2 2689999986432222 3233
Q ss_pred CchhH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 161 QHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~-~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
+ |. | .++++.+--+.... .+++++..+++.|++ .++||+|-.|...
T Consensus 109 -~-q~~d~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 109 -F-QEIDVLGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred -C-cccchhccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 3 32 3 36888876554444 478888888877775 2589999877543
No 78
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.05 E-value=0.42 Score=49.77 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=71.3
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (367)
||+.+ -.|++++.+|-|.|+.-.+| ++.++.+..++ ++.-+.+ |+ ..+.||+++...... .+.+.
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n-~l~gl~~--A~-------~~~~Pvl~I~G~~~~~~~~~~~ 106 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSN-LVTGLAT--AN-------SEGDPVVAIGGQVKRADLLKLT 106 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhH-HHHHHHH--Hh-------hcCCCEEEEeCCCcccccccCc
Confidence 67777 69999999999999874333 34455555544 4455443 22 268999998642222 23333
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C-CCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~-~~Pv~ir~~~~~ 209 (367)
+|.....++++.+--+ .....++.++...++.|++ . ++||+|..+...
T Consensus 107 ~q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 107 HQSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred ccccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 3322234788887654 3444677787777776664 2 589999877653
No 79
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=94.98 E-value=0.92 Score=47.65 Aligned_cols=113 Identities=12% Similarity=0.003 Sum_probs=68.4
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p~~~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
|++.+ -.|++++.+|-|.|+...+|-++ +..+..+ -++.-|.+. + ...+||+++..+.... +.|.
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-n~~~gi~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~ 111 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNL-HLINGLFDC--H-------RNHVPVLAIAAHIPSSEIGSGY 111 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHH-HHHHHHHHH--h-------hcCCCEEEEecCCccccCCCCC
Confidence 57766 59999999999999985555444 3334433 344444332 2 2689999986433322 3333
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH----cCCCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~----~~~~Pv~ir~~~~~ 209 (367)
.+......+++.+--+ .....+++++...++.|+ ..++||+|-.+...
T Consensus 112 ~Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 112 FQETHPQELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred ccccChhhhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 2212224788876543 333566777655555544 45789999877554
No 80
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.97 E-value=0.22 Score=43.57 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=62.9
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeeE--EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKPV--VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p~--~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=||+.+ -.|++++.+|-|.|+.-.+|- +.+..+.. .-++--+.+... .+.||+++....... +.+
T Consensus 36 i~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~-~n~~~gl~~A~~---------~~~Pvl~i~g~~~~~~~~~~ 104 (162)
T cd07037 36 FRLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAV-ANLLPAVVEAYY---------SGVPLLVLTADRPPELRGTG 104 (162)
T ss_pred ceEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHH-HHHhHHHHHHHh---------cCCCEEEEECCCCHHhcCCC
Confidence 367776 699999999999999854553 33444443 335555544322 589999986543322 223
Q ss_pred CCchhHH-HHHHhcCCCcE--EEeeCC-------HHHHHHHHHHhHcC-CCcEEEec
Q 017714 160 AQHSHCY-AAWYASVPGLK--VLSPYS-------SEDARGLLKAAIRD-PDPVVFLE 205 (367)
Q Consensus 160 ~tH~~~~-~a~~~~iP~~~--V~~P~d-------~~e~~~~~~~a~~~-~~Pv~ir~ 205 (367)
. ++..+ .++++.+--+. |-.|.+ +..+.++++.|... ++|+++-.
T Consensus 105 ~-~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 105 A-NQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred C-CcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 3 31223 36777765432 223333 33344444444443 58999853
No 81
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.93 E-value=0.3 Score=51.50 Aligned_cols=114 Identities=11% Similarity=0.147 Sum_probs=70.8
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~-G~~p~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G 159 (367)
=|++.+ -.|++++.+|.|.|+. |...+ +.+..+.+++ ++.-|.+. + ..++||+++...... .+.+
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n-~~~gi~~A--~-------~~~~Pvl~I~g~~~~~~~~~~ 112 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITN-FVTAVATA--Y-------WAHTPVVLVTPQAGTKTIGQG 112 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH-HHHHHHHH--h-------hcCCCEEEEeCCCCcccCCCC
Confidence 467777 6999999999999987 54433 3344455443 44444332 2 268999999643221 1223
Q ss_pred CCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhH----cCCCcEEEecccccc
Q 017714 160 AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELLY 210 (367)
Q Consensus 160 ~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~----~~~~Pv~ir~~~~~~ 210 (367)
. ++..+ ..+++.+-.+ .....+++++...++.|+ ..++||||-.+..+.
T Consensus 113 ~-~q~~d~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~ 166 (588)
T PRK07525 113 G-FQEAEQMPMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF 166 (588)
T ss_pred C-CcccchhhhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 2 32223 3788887544 445567777776666665 457899998876543
No 82
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=94.86 E-value=0.56 Score=49.33 Aligned_cols=114 Identities=12% Similarity=0.028 Sum_probs=68.0
Q ss_pred CceeechhhHHHHHHHHHHHhccCCee-E-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCC-C
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-A 160 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p-~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~ 160 (367)
=||+.+ -.|++++.+|-|.|+...+| + +.+..+..+ -++--+.+. + ..++||+++.........+ .
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~-n~~~~i~~A--~-------~~~~Pvl~I~G~~~~~~~~~~ 107 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGAT-HLLNGLYDA--K-------EDHVPVLALVGQVPTTGMNMD 107 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHH-HHHHHHHHH--h-------hcCCCEEEEecCCccccCCCC
Confidence 367777 69999999999999875444 3 334444443 344554432 2 2689999986533222222 2
Q ss_pred CchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH----hHcCCCcEEEeccccc
Q 017714 161 QHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA----AIRDPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~----a~~~~~Pv~ir~~~~~ 209 (367)
.++..+ .++++.+--+ .....+++++...++. |...++||||-.|..+
T Consensus 108 ~~q~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 108 TFQEMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred CcceechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 231223 3788876433 2344555555555544 4456799999877654
No 83
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.84 E-value=0.41 Score=50.56 Aligned_cols=113 Identities=19% Similarity=0.096 Sum_probs=71.5
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~-G~~p~~-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=||+.+ -.|++++.+|-|.|+. |...++ .+..+.+++ ++--|.+ |+ ..+.||+++....... +.+
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N-~l~gia~--A~-------~~~~Pvl~i~G~~~~~~~~~~ 118 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN-AVTPLQD--AL-------MDSIPLVCITGQVPTHLIGSD 118 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhH-HHHHHHH--Hh-------hcCCCEEEEEcCCChhhcCCC
Confidence 478888 7999999999999976 543333 344555443 4444432 22 2689999986432222 223
Q ss_pred CCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-----CCcEEEeccccc
Q 017714 160 AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (367)
Q Consensus 160 ~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~~~~ 209 (367)
..| ..| .++++.+--+ .+...++.++..+++.|++. ++||||..+...
T Consensus 119 ~~q-~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 119 AFQ-ECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred CCc-ccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 222 223 3677776443 33457788888888877763 689999877654
No 84
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.66 E-value=0.52 Score=49.54 Aligned_cols=114 Identities=18% Similarity=0.064 Sum_probs=71.5
Q ss_pred CceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=||+.+ -.|++++.+|-|.|+...+| ++.+..+.+++ ++.-|.+. + ..++||+++....... +.+
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N-~l~gl~~A--~-------~~~~Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATN-AITGIATA--Y-------MDSIPMVVLSGQVPSTLIGED 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHH-HHHHHHHH--H-------hcCCCEEEEecCCCccccCCC
Confidence 467776 79999999999999874443 33455455443 44544432 2 2689999986432222 223
Q ss_pred CCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-----CCcEEEeccccc
Q 017714 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (367)
Q Consensus 160 ~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~~~~ 209 (367)
..+......+++.+--+ .....++.++..+++.|++. ++|||+..|...
T Consensus 112 ~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 112 AFQETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred cccccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 32211223788887654 45556777777777776652 689999877653
No 85
>PRK08617 acetolactate synthase; Reviewed
Probab=94.59 E-value=2.3 Score=44.43 Aligned_cols=152 Identities=12% Similarity=0.060 Sum_probs=88.3
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCee--EEe
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP--VVE 113 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~ 113 (367)
+++..+++.+.|.+. +-+-++.-+ +.. ...+.+.+.+. .=|++.+ ..|++++.+|.|.|+...+| ++.
T Consensus 4 ~~~~~~~l~~~L~~~---GV~~vFg~p--G~~--~~~l~~al~~~--~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~v 73 (552)
T PRK08617 4 KKYGADLVVDSLINQ---GVKYVFGIP--GAK--IDRVFDALEDS--GPELIVT-RHEQNAAFMAAAIGRLTGKPGVVLV 73 (552)
T ss_pred cccHHHHHHHHHHHc---CCCEEEeCC--Ccc--HHHHHHHHhhC--CCCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEE
Confidence 355667777766543 334344322 110 11222344322 2467777 69999999999999985443 344
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCC--CCCCCCCchhHH-HHHHhcCCCcEEEeeCCHHHHHHH
Q 017714 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGL 190 (367)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~--~~g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~ 190 (367)
|..+.+++ ++.-+.+. + ..+.||+++...-. ..+.+..| ..+ ..+++.+--+ .+...++.++...
T Consensus 74 t~GpG~~N-~l~gl~~A--~-------~~~~PvlvisG~~~~~~~~~~~~q-~~d~~~l~~~~tk~-~~~v~~~~~~~~~ 141 (552)
T PRK08617 74 TSGPGVSN-LATGLVTA--T-------AEGDPVVAIGGQVKRADRLKRTHQ-SMDNVALFRPITKY-SAEVQDPDNLSEV 141 (552)
T ss_pred CCCCcHhH-hHHHHHHH--h-------hcCCCEEEEecCCcccccCCCCcc-ccchhhhhhhhcce-EEEeCCHHHHHHH
Confidence 55555554 44444332 2 26899999853211 12333333 223 3788887654 5555778887777
Q ss_pred HHHhHc-----CCCcEEEeccccc
Q 017714 191 LKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 191 ~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
++.|++ .++||+|-.+...
T Consensus 142 i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 142 LANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred HHHHHHHHccCCCCcEEEeChhhh
Confidence 777775 2589999877543
No 86
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=94.58 E-value=1 Score=47.20 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=87.3
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCee--EE
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP--VV 112 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p--~~ 112 (367)
++++..+.+.+.|.+.. -..|+.+-.+- ...+.+.+. +. +=+++.+ ..|++++.+|.|.|+...+| ++
T Consensus 14 ~~~~~~~~i~~~L~~~G--v~~vFg~pG~~-----~~~l~~al~-~~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~ 83 (571)
T PRK07710 14 KLMTGAQMLIEALEKEG--VEVIFGYPGGA-----VLPLYDALY-DC-GIPHILT-RHEQGAIHAAEGYARISGKPGVVI 83 (571)
T ss_pred ccchHHHHHHHHHHHcC--CCEEEeCCCcc-----hHHHHHHHH-hc-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEE
Confidence 34455666666665421 13344443211 112223333 23 4688877 89999999999999984443 33
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 017714 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL 190 (367)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~ 190 (367)
.+..+..++ ++--|.+. + ..+.||+++....... +.+..+.....++++.+.-+ .+...+++++..+
T Consensus 84 ~t~GPG~~N-~~~gl~~A--~-------~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~ 152 (571)
T PRK07710 84 ATSGPGATN-VVTGLADA--M-------IDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKH-NYQVRKASDLPRI 152 (571)
T ss_pred ECCCccHHH-HHHHHHHH--h-------hcCCCEEEEeccCCccccCCCCccccchhhhhhcccce-EEecCCHHHHHHH
Confidence 455555443 44544432 2 2689999986432222 32332212223788887655 3345667777777
Q ss_pred HHHhHc----C-CCcEEEecccc
Q 017714 191 LKAAIR----D-PDPVVFLENEL 208 (367)
Q Consensus 191 ~~~a~~----~-~~Pv~ir~~~~ 208 (367)
++.|++ . ++||+|-.+..
T Consensus 153 i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 153 IKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred HHHHHHHHhcCCCCcEEEEcChh
Confidence 777665 2 59999987754
No 87
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.58 E-value=0.81 Score=48.06 Aligned_cols=113 Identities=22% Similarity=0.108 Sum_probs=73.3
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~~-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
||+.+ -.|++++.+|.|.|+. |...++ .+..+..++ ++--|.+. + ..++||+++....... +.+.
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n-~l~gi~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~ 112 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATN-AITGIATA--Y-------MDSIPLVVLSGQVATSLIGYDA 112 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhh-hHHHHHHH--h-------hcCCCEEEEECCCChhccCCCC
Confidence 67776 6999999999999987 654443 344454443 44444332 2 2689999986432222 3333
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
.|.....++++.+--+ .....+++++...++.|++ .++||||..+...
T Consensus 113 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 113 FQECDMVGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred CceecHHHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 3322234788887654 4445688888888888876 3689999877654
No 88
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.38 E-value=0.82 Score=47.77 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=70.3
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeeEE--ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p~~--~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=|++.+ -.|+++..+|.|.|+.-.+|-+ .+..+..++ ++.-+.+ + + ..+.||+++...-... +.+
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N-~l~~l~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~ 108 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIH-LLNGLYD-A-K-------MDHAPVIALTGQVESDMIGHD 108 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhh-hHHHHHH-H-H-------hcCCCEEEEecCCCccccCCC
Confidence 456666 6999999999999998555533 344454443 4444433 2 2 2689999986432221 223
Q ss_pred CCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEecccccc
Q 017714 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (367)
Q Consensus 160 ~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~~~~ 210 (367)
..+......+++.+--+ .....+++++...++.|++ .++||+|..|..+.
T Consensus 109 ~~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~ 162 (549)
T PRK06457 109 YFQEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDIL 162 (549)
T ss_pred cccccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHh
Confidence 32211224788887544 4556666776666666654 47999998776543
No 89
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=94.16 E-value=0.41 Score=50.09 Aligned_cols=112 Identities=18% Similarity=0.100 Sum_probs=71.7
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
|++.+ -.|++++.+|.|.|+.-.+| ++.|+.+..+ -++.-|.+.. ..++||+++..+.... +.+.
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-n~l~~i~~A~---------~~~~Pvl~i~g~~~~~~~~~~~ 109 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGAT-NLVTGIATAY---------MDSIPMVVFTGQVPTSLIGSDA 109 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHH-HHHHHHHHHH---------hcCCCEEEEecCCCccccCCCC
Confidence 78887 69999999999999874343 3445445444 3455554322 2689999986532222 2232
Q ss_pred CchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-----CCcEEEeccccc
Q 017714 161 QHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~~~~ 209 (367)
.+ ..| .++++.+--+. ....+++++..+++.|++. ++||||..+..+
T Consensus 110 ~q-~~d~~~~~~~~tk~~-~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 110 FQ-EADILGITMPITKHS-FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred Cc-ccChhhhhcCcccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 22 223 37888776553 3346788888888877752 589999877553
No 90
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=94.13 E-value=0.73 Score=44.18 Aligned_cols=142 Identities=16% Similarity=0.079 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhH---HHHHHHHHHHhccC-CeeEEec
Q 017714 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE---AGFTGIGVGAAYYG-LKPVVEF 114 (367)
Q Consensus 39 ~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE---~~~vg~AaGlA~~G-~~p~~~~ 114 (367)
.-.++.++|.++....++.++++ |++.+. +. | +|++..--- -.++.+|.|++++. -++++++
T Consensus 12 i~~~~~~a~~~l~~~p~d~iivs-diGc~~-----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVVS-GIGCSA-----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE-CCCccc-----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence 45677777877654445655554 666432 12 4 555543211 23566888888774 4677776
Q ss_pred ccccHH--HHHHHHHHHHHhhccccCCCCccccEEEEeC-C---CCCCC-------CCC---------Cch--hH-HHHH
Q 017714 115 MTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-------VGA---------QHS--HC-YAAW 169 (367)
Q Consensus 115 ~~~~f~--~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-------~G~---------tH~--~~-~~a~ 169 (367)
. .+.. .-....+.+ +++ .++|++++.. + |...+ .|. ... .. ..++
T Consensus 78 ~-GDG~f~~mg~~eL~t-A~r--------~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~ 147 (287)
T TIGR02177 78 G-GDGDLYGIGGNHFVA-AGR--------RNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAI 147 (287)
T ss_pred e-CchHHHhccHHHHHH-HHH--------hCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHH
Confidence 5 4432 233344443 333 5788777643 1 21111 110 000 01 1134
Q ss_pred HhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 170 YASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 170 ~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.....-.-.....+++|+..++++|++.++|++|-
T Consensus 148 A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIe 182 (287)
T TIGR02177 148 ALGYTFVARGFSGDVAHLKEIIKEAINHKGYALVD 182 (287)
T ss_pred hCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 44443222333699999999999999999999884
No 91
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.12 E-value=0.99 Score=39.31 Aligned_cols=110 Identities=16% Similarity=0.097 Sum_probs=67.4
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeeE--EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKPV--VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p~--~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=||+.+ -.|++++.+|.|.++.- +|- +.+..+.+ .-+..-+.+... .+.||+++....... +.+
T Consensus 36 i~~i~~-rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~-~n~~~gl~~A~~---------~~~Pvl~i~g~~~~~~~~~~ 103 (162)
T cd07038 36 LRWVGN-CNELNAGYAADGYARVK-GLGALVTTYGVGE-LSALNGIAGAYA---------EHVPVVHIVGAPSTKAQASG 103 (162)
T ss_pred ceEEee-CCHHHHHHHHHHHHHhh-CCEEEEEcCCccH-HHHHHHHHHHHH---------cCCCEEEEecCCCccccccc
Confidence 466666 69999999999999986 443 33344444 445566654322 589999986432221 222
Q ss_pred C-Cc-----h-hHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEecc
Q 017714 160 A-QH-----S-HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (367)
Q Consensus 160 ~-tH-----~-~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~ 206 (367)
. .| + +.+ .++++.+-.+ .....++.++..+++.|++ .++||+|-.|
T Consensus 104 ~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 104 LLLHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred cceeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 2 12 1 123 3788877554 3344677777777776665 4689999544
No 92
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=94.12 E-value=0.12 Score=43.75 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=68.5
Q ss_pred eeechh-hHHHHHHHHHHHhccCCeeEEecccccHHH--HHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCC
Q 017714 86 VLDTPI-TEAGFTGIGVGAAYYGLKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQ 161 (367)
Q Consensus 86 ~i~~GI-aE~~~vg~AaGlA~~G~~p~~~~~~~~f~~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~t 161 (367)
+.+++. .|...+|+++|+.++|.+|..-++.+..-+ -++..+. .. .++|+.++.++ |.. +.+..
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~----~t-------y~iPl~ml~ShRG~~-~E~i~ 110 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLY----VT-------YKIPLLMLASHRGVL-KEGIE 110 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHH----HH-------hccchhhhhhccchh-hcCCc
Confidence 555554 799999999999999999999888654432 2222221 11 46777776553 432 21211
Q ss_pred ch---h-HHHHHHhcCCCcEEEeeCCHHHHHHHHHH----hHcCCCcEEEecc
Q 017714 162 HS---H-CYAAWYASVPGLKVLSPYSSEDARGLLKA----AIRDPDPVVFLEN 206 (367)
Q Consensus 162 H~---~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~~----a~~~~~Pv~ir~~ 206 (367)
-+ . ....++..+ ++.-+.|..|+|...++.. +++...|+.++.+
T Consensus 111 AQVpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 111 AQVPMGRALPKILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred cccccchhhHHHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 10 1 123566655 6668889999997776654 5567889998754
No 93
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.04 E-value=0.43 Score=50.16 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=72.4
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~-G~~p~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=||+.+ -.|++++.+|-|.|+. |...+ +.+..+..+ -++.-|.+. + ..+.||+++....... +.+
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~-N~~~gla~A--~-------~~~~Pvl~I~G~~~~~~~~~~ 121 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGAT-NLVTGLADA--Y-------MDSIPLVVITGQVATPLIGKD 121 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHH-HHHHHHHHH--h-------hcCcCEEEEecCCCcccccCC
Confidence 477777 6999999999999987 53333 345555444 344444332 2 2689999986432222 222
Q ss_pred CCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-----CCcEEEeccccc
Q 017714 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (367)
Q Consensus 160 ~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~~~~ 209 (367)
..|......+++.+--+ .....+++++..+++.|++. ++||||..+..+
T Consensus 122 ~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 122 GFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred CCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 22211123788887654 34457888888888888763 699999877654
No 94
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.02 E-value=1.3 Score=46.59 Aligned_cols=154 Identities=18% Similarity=0.068 Sum_probs=86.2
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCee-E-E
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-V-V 112 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p-~-~ 112 (367)
.+++..+++.+.|.++. -+.|+.+-.|- ...+.+.+.+.- .=|++.+ -.|++++.+|-|.|+...+| + +
T Consensus 19 ~~~~~a~~l~~~L~~~G--V~~vFgvpG~~-----~~~l~dal~~~~-~i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~ 89 (587)
T PRK06965 19 ADSIGAEILMKALAAEG--VEFIWGYPGGA-----VLYIYDELYKQD-KIQHVLV-RHEQAAVHAADGYARATGKVGVAL 89 (587)
T ss_pred hhccHHHHHHHHHHHcC--CCEEEecCCcc-----hHHHHHHHhhcC-CCeEEEe-CCHHHHHHHHHHHHHHhCCCeEEE
Confidence 34556666666665421 23344443211 112223332211 2378877 79999999999999984443 3 3
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCCCchhHH-HHHHhcCCCcEEEeeCCHHHHHH
Q 017714 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARG 189 (367)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~ 189 (367)
.+..+.+++ ++.-|.+. + ..++||+++....... +.+. ++..| .++++.+--+ .....+++++..
T Consensus 90 ~t~GpG~~N-~l~gl~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~-~q~~d~~~l~~~itk~-~~~v~~~~~~~~ 157 (587)
T PRK06965 90 VTSGPGVTN-AVTGIATA--Y-------MDSIPMVVISGQVPTAAIGQDA-FQECDTVGITRPIVKH-NFLVKDVRDLAE 157 (587)
T ss_pred ECCCccHHH-HHHHHHHH--h-------hcCCCEEEEecCCCccccCCCC-cccccHHHHhcCCcce-eEEeCCHHHHHH
Confidence 444454443 44554432 2 2689999986432222 2222 31223 3788887654 444556777666
Q ss_pred HHHHhHc----C-CCcEEEeccccc
Q 017714 190 LLKAAIR----D-PDPVVFLENELL 209 (367)
Q Consensus 190 ~~~~a~~----~-~~Pv~ir~~~~~ 209 (367)
+++.|++ . ++||||-.+...
T Consensus 158 ~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 158 TVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred HHHHHHHHHhcCCCCeEEEEeChhh
Confidence 6666654 3 589999877653
No 95
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.92 E-value=0.89 Score=47.72 Aligned_cols=113 Identities=20% Similarity=0.122 Sum_probs=71.3
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCee-EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p-~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
||+.+ -.|++++.+|.|.|+. |... ++.++.+..+ -++.-|.+..+ .++||+++....... +.+.
T Consensus 50 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-n~~~gla~A~~---------~~~Pvl~i~G~~~~~~~~~~~ 118 (566)
T PRK07282 50 RHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGAT-NAITGIADAMS---------DSVPLLVFTGQVARAGIGKDA 118 (566)
T ss_pred eEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHH-HHHHHHHHHhh---------cCCCEEEEecccccccCCCCC
Confidence 88888 7999999999999987 5433 3445555444 34455443222 689999986432222 2233
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-----CCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~~~~ 209 (367)
.|.....++++.+-.+.. ...++.++..+++.|++. ++||||..+...
T Consensus 119 ~q~~d~~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 119 FQEADIVGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred ccccChhchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 221222378887765544 445777777777777653 589999877653
No 96
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.88 E-value=0.76 Score=40.19 Aligned_cols=111 Identities=23% Similarity=0.103 Sum_probs=66.2
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..|. +=-..+++|.|++++. -++++++. .+. .+.....+. .++. .++|++++.- + +...
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~-GDG~f~~~~~el~-ta~~--------~~lpv~ivv~NN~~~~~ 107 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVE-GDGAFGFSGMELE-TAVR--------YNLPIVVVVGNNGGWYQ 107 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEE-cchhhcCCHHHHH-HHHH--------cCCCEEEEEEECccccc
Confidence 889988643 2334566788888875 36777765 332 222333332 3332 5888777642 2 2211
Q ss_pred C----C----CC-----CchhH-HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 G----V----GA-----QHSHC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 g----~----G~-----tH~~~-~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
- . +. .+... +..+.++. |+....-.+.+|+..+++++.+.++|++|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 168 (172)
T cd02004 108 GLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALIN 168 (172)
T ss_pred chhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 0 00 01111 22455555 677777889999999999999889999883
No 97
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.72 E-value=1.4 Score=46.27 Aligned_cols=111 Identities=19% Similarity=0.078 Sum_probs=72.9
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
|++.+ -.|++++.+|.|.|+...+| ++.|+.+.+++ ++.-+.+. + ..++||+++....... +.+.
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n-~~~gla~A--~-------~~~~Pvl~i~G~~~~~~~~~~~ 111 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTN-AVTGLATA--Y-------MDSIPLVLISGQVPNSLIGTDA 111 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHH-HHHHHHHH--h-------hcCCCEEEEecCCCccccCCCC
Confidence 77777 79999999999999874433 34455565554 55555432 2 2689999986432222 2222
Q ss_pred CchhHHH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEecccc
Q 017714 161 QHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (367)
Q Consensus 161 tH~~~~~-a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~ 208 (367)
.| .-|. ++++.+--+ .....+++++..+++.|++ .++||||-.|..
T Consensus 112 ~q-~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 112 FQ-EIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred Cc-ccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 22 2233 788877544 4456889999998888876 258999987754
No 98
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.59 E-value=1.9 Score=45.75 Aligned_cols=112 Identities=17% Similarity=0.070 Sum_probs=70.6
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee-EEe-cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p-~~~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
||+.+ -.|++++.+|.|.|+...+| ++. +..+..+ -++.-+.+ + + ..++||+++....... +.+.
T Consensus 62 ~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~-n~l~gl~~-A-~-------~d~~Pvl~i~G~~~~~~~~~~~ 130 (616)
T PRK07418 62 KHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGAT-NLVTGIAT-A-Q-------MDSVPMVVITGQVPRPAIGTDA 130 (616)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHH-HHHHHHHH-H-H-------hcCCCEEEEecCCCccccCCCC
Confidence 78888 79999999999999874444 333 4444443 34444432 2 2 2689999986432222 2223
Q ss_pred CchhHHH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C-CCcEEEeccccc
Q 017714 161 QHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~-a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~-~~Pv~ir~~~~~ 209 (367)
.| ..+. .+++.+--+ .....+++++..+++.|++ . ++|++|..|..+
T Consensus 131 ~Q-e~d~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 131 FQ-ETDIFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred cc-cccHHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 22 2233 677766433 3346788888887777776 3 499999877654
No 99
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.59 E-value=2 Score=45.04 Aligned_cols=113 Identities=20% Similarity=0.120 Sum_probs=71.4
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeeE--EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKPV--VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p~--~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=||+.+ ..|++++.+|.|.|+.-.+|- +.+..+..++ ++.-|.+ |+ ..+.||+++....... +.+
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N-~l~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~ 120 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTGKPAVCMACSGPGATN-LVTAIAD--AR-------LDSIPLVCITGQVPASMIGTD 120 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHH-HHHHHHH--HH-------hcCCCEEEEeccCCcccccCC
Confidence 377886 799999999999999855553 3355554443 4555543 22 2689999986432221 223
Q ss_pred CCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C-CCcEEEecccc
Q 017714 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENEL 208 (367)
Q Consensus 160 ~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~-~~Pv~ir~~~~ 208 (367)
..+.....++++.+--+..- ..+++++...++.|++ . ++||+|-.+..
T Consensus 121 ~~q~~d~~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 121 AFQEVDTYGISIPITKHNYL-VRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred CccccchhhhhhccceEEEE-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 32211223788887655333 3578888877777765 2 58999987654
No 100
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.43 E-value=0.77 Score=48.16 Aligned_cols=113 Identities=16% Similarity=0.031 Sum_probs=72.0
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p~~~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (367)
|++.+ ..|++++.+|.|.|+.-.+|-++ +..+..++ ++.-|.+... .++||+++...... .+.+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N-~l~gi~~A~~---------~~~Pvl~i~G~~~~~~~~~~~ 113 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTN-LVTGLITAYW---------DSSPVIAITGQVPRSVMGKMA 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHH-HHHHHHHHHh---------hCCCEEEEecCCCccccCCCC
Confidence 67777 79999999999999984444333 55555544 5555543222 68999998643222 13333
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
.|.....++++.+--+.. ...+++++...++.|++ .++||+|-.+..+
T Consensus 114 ~q~~d~~~i~~~~tk~~~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 114 FQEADAMGVFENVTKYVI-GIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred ccccchhhhhhccceeEE-EeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 221222378888765543 34677888777777765 3699999877554
No 101
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.35 E-value=2.7 Score=44.15 Aligned_cols=112 Identities=21% Similarity=0.083 Sum_probs=70.4
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
|++.+ -.|++++.+|.|.|+...+| ++.|..+..+ -++--|.+.. ..++||+++....... +.+.
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~-N~l~~i~~A~---------~~~~Pvlvi~G~~~~~~~~~~~ 112 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGAT-NAITGIATAY---------TDSVPLVILSGQVPSNLIGTDA 112 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHH-HHHHHHHHHh---------hcCCCEEEEecCCCccccCCCc
Confidence 67777 79999999999999984343 3335555444 3445544322 2689999986432222 2233
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEecccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~ 208 (367)
.+......+++.+--+ .....+++++...++.|++ .++||+|-.+..
T Consensus 113 ~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 113 FQECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred ccccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 2211223788877543 4555677877777777665 358999987754
No 102
>PLN02470 acetolactate synthase
Probab=93.28 E-value=0.58 Score=49.30 Aligned_cols=113 Identities=18% Similarity=0.043 Sum_probs=71.5
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~-G~~p~~-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=||+.+ -.|++++.+|.|.|+. |...++ .+..+..+ -++.-|.+..+ .++||+++....... +.+
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-N~l~gia~A~~---------~~~Pvl~I~G~~~~~~~~~~ 120 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGAT-NLVTGLADALL---------DSVPLVAITGQVPRRMIGTD 120 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH-HHHHHHHHHHh---------cCCcEEEEecCCChhhcCCC
Confidence 367777 7999999999999987 533333 45545444 45555543222 689999986432222 222
Q ss_pred CCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-----CCcEEEecccc
Q 017714 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENEL 208 (367)
Q Consensus 160 ~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~~~ 208 (367)
..|.....++++.+--+ -+...+++++..+++.|++. ++||+|-.|..
T Consensus 121 ~~q~~d~~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 121 AFQETPIVEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred cCcccchhhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 32211223677776544 33356888888888888763 69999987754
No 103
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.26 E-value=4.3 Score=42.55 Aligned_cols=114 Identities=18% Similarity=0.108 Sum_probs=73.7
Q ss_pred CceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ 161 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~t 161 (367)
=||+.+ --||.++.+|.|.|+.-.|| ...|..|.+++ ++.-|.+ |++ ...|++++...-.+...|.-
T Consensus 40 i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN-~~tgla~--A~~-------d~~Pll~itGqv~~~~~g~~ 108 (550)
T COG0028 40 IRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATN-LLTGLAD--AYM-------DSVPLLAITGQVPTSLIGTD 108 (550)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHH-HHHHHHH--HHh-------cCCCEEEEeCCccccccCcc
Confidence 477877 69999999999999984443 33344455443 3344432 232 68899998542222222322
Q ss_pred chhH-HH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 162 HSHC-YA-AWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 162 H~~~-~~-a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
..|+ |. ++++.+--+ .+...+++|+-.+++.|++ .++|++|-.|+..
T Consensus 109 afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 109 AFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred hhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 2233 33 788887544 5677888999988888886 3589999877654
No 104
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=93.15 E-value=0.96 Score=39.83 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=63.4
Q ss_pred hCCCceee-chhhH-HHHHHHHHHHhccCCeeEEecccccHH-HHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCC
Q 017714 81 YGPERVLD-TPITE-AGFTGIGVGAAYYGLKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAA 155 (367)
Q Consensus 81 ~~p~R~i~-~GIaE-~~~vg~AaGlA~~G~~p~~~~~~~~f~-~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~ 155 (367)
..|.||+. .|..- -..++.|.|++++--+|++++. .+.. +.....+- .+. +.++|++++.- + +..
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~-GDGsf~m~~~eL~-ta~--------~~~l~v~ivVlNN~~~g 108 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLT-GDLSFLHDLNGLL-LGK--------QEPLNLTIVVINNNGGG 108 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEE-ehHHHHHhHHHHH-hcc--------ccCCCeEEEEEECCCCc
Confidence 33788884 34321 2355677777766467777765 3322 22222221 122 35788777643 2 221
Q ss_pred C-CCCCC--------------chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEE
Q 017714 156 A-GVGAQ--------------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 203 (367)
Q Consensus 156 ~-g~G~t--------------H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~i 203 (367)
. ....+ +.-.+.++.+++ |+.-+...+++|+..+++++++.++|.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 170 (175)
T cd02009 109 IFSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVI 170 (175)
T ss_pred hheeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 00000 111223455555 56677788999999999999999999988
No 105
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.01 E-value=2.7 Score=44.16 Aligned_cols=113 Identities=19% Similarity=0.074 Sum_probs=71.6
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (367)
|++.+ -.|++++.+|.|.|+. |...+ +.+..+.+++ ++--+.+. + ..++||+++...... .+.+.
T Consensus 44 ~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n-~l~gia~A--~-------~~~~Pvl~i~G~~~~~~~~~~~ 112 (572)
T PRK08979 44 EHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATN-TITGIATA--Y-------MDSIPMVVLSGQVPSNLIGNDA 112 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhH-HHHHHHHH--h-------hcCCCEEEEecCCCccccCCCC
Confidence 68877 7999999999999987 54433 3355555443 44444332 2 268999998643222 13333
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
.|.....++++.+--+ .....+++++...++.|++ .++||||..+...
T Consensus 113 ~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 113 FQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 3322223788887554 3445578888887777775 3589999877543
No 106
>PRK08266 hypothetical protein; Provisional
Probab=92.91 E-value=3.6 Score=42.82 Aligned_cols=154 Identities=19% Similarity=0.095 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCee--EEec
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP--VVEF 114 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~ 114 (367)
++..+++.+.|.++ .=+.++.-+ +. ....+.+.+.+.-+.=|++.+ ..|++++.+|-|.|+.--+| ++.|
T Consensus 4 ~~~~~~l~~~L~~~---Gv~~vFg~p--G~--~~~~l~~al~~~~~~i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t 75 (542)
T PRK08266 4 MTGGEAIVAGLVAH---GVDTVFGLP--GA--QLYWLFDALYKAGDRIRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVV 75 (542)
T ss_pred CcHHHHHHHHHHHc---CCCEEEECC--Cc--chHHHHHHHHhcCCCCeEEee-ccHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 45666666666553 333333322 11 011223344332112467777 79999999999999884444 3345
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC--CCchhHHH-HHHhcCCCcEEEeeCCHHHHHH
Q 017714 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG--AQHSHCYA-AWYASVPGLKVLSPYSSEDARG 189 (367)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G--~tH~~~~~-a~~~~iP~~~V~~P~d~~e~~~ 189 (367)
..+.+++ ++.-+.+ + + ..++||+++....... +.| ..|...+. .+++.+--+ .....+++++..
T Consensus 76 ~GpG~~N-~~~gi~~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~ 144 (542)
T PRK08266 76 PGPGVLN-AGAALLT-A-Y-------GCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKW-AERIEHPSEAPA 144 (542)
T ss_pred CCCcHHH-HHHHHHH-H-H-------hhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcce-EEEeCCHHHHHH
Confidence 5555543 4455443 2 2 2689999986432221 222 23422243 788887654 455566777777
Q ss_pred HHHHhHc-----CCCcEEEeccccc
Q 017714 190 LLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 190 ~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
.++.|++ .++||++-.|...
T Consensus 145 ~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 145 LVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred HHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 7776665 3689999877543
No 107
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.91 E-value=1.8 Score=38.21 Aligned_cols=112 Identities=20% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCC-
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA- 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~-G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~- 156 (367)
|.||+..+- +=-..+..|.|++++ .-++++++..-.-.+.....+.. +.+ .++|++++.- ++...
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~~eL~t-a~~--------~~l~vi~vV~NN~~~g~~ 108 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQELET-AVR--------LKIPLVVLIWNDNGYGLI 108 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHHHHHHH-HHH--------HCCCeEEEEEECCcchHH
Confidence 788987532 223345577777765 45677776532212222222322 332 4788777742 23221
Q ss_pred C------CCC-Cc---hh-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 G------VGA-QH---SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 g------~G~-tH---~~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
. .+. .+ .. .+.++-+++ |..-+...+++|+..+++++++.++|.+|-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 166 (177)
T cd02010 109 KWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVID 166 (177)
T ss_pred HHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 000 00 01 122444555 677788899999999999999999999984
No 108
>PRK05858 hypothetical protein; Provisional
Probab=92.85 E-value=1.1 Score=46.69 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=87.5
Q ss_pred cccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEE--e
Q 017714 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV--E 113 (367)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~--~ 113 (367)
.++..+++.+.|.++ +-+.++.-+ +. ....+.+.+. +. .=||+.+ -.|++++.+|.|.|+...+|-+ .
T Consensus 4 ~~~~~~~l~~~L~~~---GV~~vFg~p--G~--~~~~l~dal~-~~-~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~ 73 (542)
T PRK05858 4 TGHAGRLAARRLKAH---GVDTMFTLS--GG--HLFPLYDGAR-EE-GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVL 73 (542)
T ss_pred cCcHHHHHHHHHHHc---CCCEEEeCC--Cc--chHHHHHHHH-hc-CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEE
Confidence 345556666666542 334444322 11 0112223332 23 3578888 6999999999999999545433 2
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCCCchhHHH-HHHhcCCCcEEEeeCCHHHHHHH
Q 017714 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGL 190 (367)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tH~~~~~-a~~~~iP~~~V~~P~d~~e~~~~ 190 (367)
+..+.+++ ++--|.+. + ..++||+++....... +.|..| ..+. ++++.+--+ .....++.++...
T Consensus 74 t~GpG~~n-~~~~i~~A--~-------~~~~Pvl~i~g~~~~~~~~~~~~q-~~d~~~l~~~~tk~-~~~v~~~~~~~~~ 141 (542)
T PRK05858 74 TAGPGVTN-GMSAMAAA--Q-------FNQSPLVVLGGRAPALRWGMGSLQ-EIDHVPFVAPVTKF-AATAQSAENAGRL 141 (542)
T ss_pred cCCchHHH-HHHHHHHH--H-------hcCCCEEEEeCCCCcccCCCCCCc-ccchhhhhhhhhce-EEEeCCHHHHHHH
Confidence 44454443 44444332 2 1689999886432222 333333 2233 688887654 4555678888777
Q ss_pred HHHhHc----C-CCcEEEeccccc
Q 017714 191 LKAAIR----D-PDPVVFLENELL 209 (367)
Q Consensus 191 ~~~a~~----~-~~Pv~ir~~~~~ 209 (367)
++.|++ . ++||+|-.+...
T Consensus 142 i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 142 VDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred HHHHHHHHcCCCCCeEEEEcChhh
Confidence 777764 2 589999877543
No 109
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.84 E-value=1 Score=47.11 Aligned_cols=113 Identities=19% Similarity=0.051 Sum_probs=70.8
Q ss_pred CceeechhhHHHHHHHHHHHhccCCee-E-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p-~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=+|+.+ -.|++++.+|-|.|+.-.+| + +.+..+..++ ++.-|.+..+ .++||+++....... +.+
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n-~~~gl~~A~~---------~~~Pvl~i~G~~~~~~~~~~ 114 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATN-LVTGIATAYM---------DSVPIVALTGQVPRSMIGND 114 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH-HHHHHHHHhh---------cCCCEEEEeccCCccccCCC
Confidence 477887 79999999999999874344 3 3354454443 4555544322 689999986432222 223
Q ss_pred CCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEecccc
Q 017714 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (367)
Q Consensus 160 ~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~ 208 (367)
..|.....++++.+--+ .+.-.++.++..+++.|++ .++||||..+..
T Consensus 115 ~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 115 AFQEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred CccccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 33311122677776533 3335677888887777776 368999987754
No 110
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.42 E-value=1.5 Score=45.79 Aligned_cols=112 Identities=14% Similarity=0.083 Sum_probs=70.4
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC----CC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA----GV 158 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~----g~ 158 (367)
|++.+ -.|++++.+|-|.|+. |...+ +.+..+.+++ +.--|.+. + ..++||+++....... +.
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N-~~~gia~A--~-------~~~~Pvl~I~G~~~~~~~~~~~ 110 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLN-GLTALANA--T-------TNCFPMIMISGSSERHIVDLQQ 110 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHh-HHHHHHHH--H-------hcCCCEEEEEccCCccccccCC
Confidence 78877 7999999999999987 54333 3344555544 44444332 2 1689999885322111 22
Q ss_pred CCCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 159 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 159 G~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
+. ++..+ .++++.+-.+ .+...++.++...++.|++ .++||||-.+..+
T Consensus 111 ~~-~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 111 GD-YEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred CC-cchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 22 31223 3788887654 5556678887777766664 2689999877654
No 111
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.15 E-value=1.3 Score=46.95 Aligned_cols=113 Identities=18% Similarity=0.093 Sum_probs=72.1
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
+++.+ -.|++++.+|.|.|+. |...+ +.+..+.+++ ++--|.+ + + ..++||+++....... +.+.
T Consensus 71 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N-~l~gl~~-A-~-------~~~~PllvI~G~~~~~~~~~~~ 139 (612)
T PRK07789 71 RHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATN-LVTPIAD-A-N-------MDSVPVVAITGQVGRGLIGTDA 139 (612)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH-HHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCc
Confidence 66666 7999999999999987 54333 3455555544 4455443 2 2 2689999986432222 2233
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
.+.....++++.+--+ .....+++++..+++.|++ .++||+|-.+..+
T Consensus 140 ~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 140 FQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred CcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 2211223788887654 3445788888888888775 2589999877654
No 112
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.86 E-value=4 Score=42.83 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=70.6
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee-E-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC-
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG- 159 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p-~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G- 159 (367)
||+.+ -.|++++.+|-|.|+...+| + +.|..+.++ -++.-|.+ |+ ..++||+++..+-... +.+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~-N~~~gla~--A~-------~d~~Pvl~I~G~~~~~~~~~~~ 120 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTA-NALGGVHN--AA-------RSRIPVLVFAGRSPYTEEGELG 120 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHH-HHHHHHHH--Hh-------hcCCCEEEEeccCCcccccccc
Confidence 78888 68999999999999985443 3 334444443 34444432 22 2689999886431111 111
Q ss_pred ----CCc-hhH--HH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 160 ----AQH-SHC--YA-AWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 160 ----~tH-~~~--~~-a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
..| .|. |. .+++.+-.+ .+...+++++...++.|++ .++||+|..|..+
T Consensus 121 ~~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv 182 (569)
T PRK08327 121 SRNTRIHWTQEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV 182 (569)
T ss_pred ccccCcccchhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence 111 133 43 788876543 4566778888877777765 2689999877543
No 113
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.85 E-value=5.2 Score=42.21 Aligned_cols=111 Identities=13% Similarity=0.025 Sum_probs=71.8
Q ss_pred ceeechhhHHHHHHHHHHHhccC-Cee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYG-LKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G-~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
|++.+ -.|++++.+|-|.|+.. .+| .+.|+.+..++ ++--+.+ |+ ..++||+++....... +.+
T Consensus 44 ~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N-~l~gl~~--A~-------~~~~Pvl~I~G~~~~~~~~~~ 112 (591)
T PRK11269 44 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD-MITGLYS--AS-------ADSIPILCITGQAPRARLHKE 112 (591)
T ss_pred cEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH-HHHHHHH--Hh-------hcCCCEEEEecCCCccccCCC
Confidence 78888 79999999999999875 444 34466555554 3344432 22 2689999986432222 222
Q ss_pred CCchhH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 160 AQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 160 ~tH~~~-~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
. + |. | .++++.+--+ .....++.++..+++.|++ .++||+|-.|...
T Consensus 113 ~-~-q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 113 D-F-QAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred c-c-cccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 2 3 33 2 3788887544 3445778888888887775 2589999877543
No 114
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=91.82 E-value=6.2 Score=36.62 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=28.6
Q ss_pred HHHhcC--CCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 168 AWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 168 a~~~~i--P~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.+.+++ +.+..+...+++|+..+++.+++.++|++|-
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIe 196 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIH 196 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 444544 3343467899999999999999999999883
No 115
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.78 E-value=1.4 Score=46.45 Aligned_cols=112 Identities=17% Similarity=0.060 Sum_probs=70.8
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee-E-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p-~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
||+.+ -.|++++.+|-|.|+.-.+| + +.+..+.+++ ++--|.+... .++||+++...-... +.+.
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n-~l~~i~~A~~---------~~~Pvl~I~G~~~~~~~~~~~ 108 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATN-LVTGIATAYA---------DSSPVIALTGQVPTKLIGNDA 108 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH-HHHHHHHHHh---------cCCCEEEEeCCCCccccCCCC
Confidence 77777 69999999999999884343 3 3355555544 4455543222 689999986432221 2333
Q ss_pred CchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-----CCcEEEeccccc
Q 017714 161 QHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~~~~ 209 (367)
.+ ..| .++++.+--+.. .-.+++++...++.|++. ++||||..+..+
T Consensus 109 ~q-~~d~~~l~~~~tk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 109 FQ-EIDALGIFMPITKHNF-QIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred Cc-cccHhhHHhhhcceEE-ecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 22 223 378888765433 446677777777777653 589999877543
No 116
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.60 E-value=2.8 Score=40.01 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEecccc
Q 017714 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTF 117 (367)
Q Consensus 39 ~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~~~ 117 (367)
.-.++.++|.++....++.++++ |++-++ . + ..+. .-..+.... -.++.+|.|++++. -++++++..=
T Consensus 18 il~al~~al~~l~~~~~~~ivvs-diGc~~-~--~-~~~~----~~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GD 86 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVS-GIGCSS-N--L-PEFL----NTYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGD 86 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE-CCchhh-h--h-hhhc----cCCCccccc--ccHHHHHHHHHHHCCCCcEEEEECC
Confidence 45667777765544445655544 565332 1 1 1121 111222211 45677888888773 4667766532
Q ss_pred c-HHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C---CCCCCC-------CC----C-chh-----HHHHHHh--cC
Q 017714 118 N-FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAGV-------GA----Q-HSH-----CYAAWYA--SV 173 (367)
Q Consensus 118 ~-f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g~-------G~----t-H~~-----~~~a~~~--~i 173 (367)
. +.+-.+..+.+.+ + .++|++++.- + |...+. |. + ... .+..+.. ..
T Consensus 87 G~~f~ig~~eL~tA~-r--------rn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~ 157 (279)
T PRK11866 87 GDGYGIGLGHLPHAA-R--------RNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGA 157 (279)
T ss_pred hHHHHccHHHHHHHH-H--------HCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCC
Confidence 2 3455666665533 3 4777776642 1 211110 10 0 000 2223443 34
Q ss_pred CCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 174 PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 174 P~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+.+....+.++.|+..+++.|++.++|.+|-
T Consensus 158 ~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~ 188 (279)
T PRK11866 158 TFVARGFSGDVKHLKEIIKEAIKHKGFSFID 188 (279)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5555666799999999999999999999984
No 117
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.57 E-value=1.9 Score=45.52 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=69.7
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~-~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
||+.+ ..|++++.+|.|.|+. |...+ +.+..+..++ ++.-|.+ |+ ..+.||+++....... +.+.
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N-~l~gl~~--A~-------~~~~Pvl~I~G~~~~~~~~~~~ 121 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATN-LVTGIAT--AQ-------MDSVPLLVITGQVGRAFIGTDA 121 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHH-HHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCC
Confidence 57776 6999999999999987 53333 3454554443 4444432 22 2689999986432222 2233
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
.+.....++++.+--+ .....+++++..+++.|++ .++||||..+..+
T Consensus 122 ~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 122 FQEVDIFGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred ccccchhhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 2211223677766433 4455678888888887775 2589999877553
No 118
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=91.30 E-value=4.4 Score=35.99 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHH-HhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccccc
Q 017714 40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118 (367)
Q Consensus 40 r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~-~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~ 118 (367)
|+++-++|.+.+. +.+++. |.+.+. ..+.. ...|.+|+..|-- -..++.|.|++++--+|++++. .+
T Consensus 1 ~~~~~~~l~~~l~--d~iiv~--d~G~~~------~~~~~~~~~~~~~~~~gsm-G~~lpaAiGa~la~~~~Vv~i~-GD 68 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVVS--NIGVPS------KELYAIRDRPLNFYMLGSM-GLASSIGLGLALATDRTVIVID-GD 68 (181)
T ss_pred CHHHHHHHHHhCC--CCEEEe--cCCHhH------HHHHhhhcCCCCeeecccc-ccHHHHHHHHHHcCCCcEEEEE-cc
Confidence 4567777777663 344443 444321 12222 1237888874421 2234577787776567777765 33
Q ss_pred HH-HHHHHHHHHHHhhccccCCCCcc-ccEEEEeC-C-CCCC-C-C--CCCchhHHHHHHhcCCCcEEEe-eCCHHHHHH
Q 017714 119 FS-MQAIDHIINSAAKSNYMSSGQIS-VPIVFRGP-N-GAAA-G-V--GAQHSHCYAAWYASVPGLKVLS-PYSSEDARG 189 (367)
Q Consensus 119 f~-~ra~dqi~~~~a~~~~~~~~~~~-~pvv~~~~-~-G~~~-g-~--G~tH~~~~~a~~~~iP~~~V~~-P~d~~e~~~ 189 (367)
.. +.....+ ..++. .+ +|++++.- + +... + . ...+.-.+.++.+++ |+.-.. ..+++|+..
T Consensus 69 G~f~m~~~el-~ta~~--------~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~ 138 (181)
T TIGR03846 69 GSLLMNLGVL-PTIAA--------ESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRD 138 (181)
T ss_pred hHHHhhhhHH-HHHHH--------hCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHH
Confidence 32 2233222 22332 35 48776653 3 2221 1 0 011111233555555 555555 789999999
Q ss_pred HHHHhHcCCCcEEEe
Q 017714 190 LLKAAIRDPDPVVFL 204 (367)
Q Consensus 190 ~~~~a~~~~~Pv~ir 204 (367)
+++ +++.++|.+|-
T Consensus 139 al~-a~~~~~p~li~ 152 (181)
T TIGR03846 139 ALK-ALAMKGPTFIH 152 (181)
T ss_pred HHH-HHcCCCCEEEE
Confidence 997 88888999984
No 119
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=91.29 E-value=1.4 Score=37.93 Aligned_cols=112 Identities=20% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCCCCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGV 158 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~ 158 (367)
|.+++..+. +=-..++.|.|++++. .+++++...-.-++..++.+.. +.. .++|++++.. ++...-.
T Consensus 36 ~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~~~l~t-a~~--------~~~~~~~iv~nN~~~~~~ 106 (168)
T cd00568 36 GRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTGQELAT-AVR--------YGLPVIVVVFNNGGYGTI 106 (168)
T ss_pred CCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccHHHHHH-HHH--------cCCCcEEEEEECCccHHH
Confidence 455554322 2234456777777775 3555555432222224444433 322 4778777653 2211100
Q ss_pred C-------------CC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 159 G-------------AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 159 G-------------~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .. +...+.++.++. |+......++.|+..+++++.+.++|++|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~ 165 (168)
T cd00568 107 RMHQEAFYGGRVSGTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALIE 165 (168)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 111223566665 777888889999999999999889999884
No 120
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.26 E-value=2 Score=45.13 Aligned_cols=114 Identities=22% Similarity=0.113 Sum_probs=70.6
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeeEE--ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p~~--~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=|++.+ ..|++++.+|.|.|+.-.+|-+ .+..+..+ -++--|.+ |+ ..++||+++..+.... +.+
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-N~~~gl~~--A~-------~~~~Pvl~I~G~~~~~~~~~~ 118 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAAT-LLVAPLAE--AL-------KASVPIVALVQDVNRDQTDRN 118 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHH-HHHHHHHH--Hh-------hcCCCEEEEecCCccccCCCC
Confidence 477777 6999999999999998445433 34444443 34455443 22 2689999986432222 222
Q ss_pred CCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----C-CCcEEEecccccc
Q 017714 160 AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY 210 (367)
Q Consensus 160 ~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~-~~Pv~ir~~~~~~ 210 (367)
..| ..+ ..+++.+--+ .....+++++...++.|++ . ++||+|-.+....
T Consensus 119 ~~Q-~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~ 173 (578)
T PRK06112 119 AFQ-ELDHIALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLL 173 (578)
T ss_pred Ccc-ccChhhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHh
Confidence 222 222 3788887654 3455667777776666664 3 5899998776543
No 121
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.02 E-value=2.4 Score=44.54 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=71.3
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~-G~~p~~~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=|++.+ -.|++++.+|.|.|+. |...++. +..+.++ -++.-|.+..+ .++||+++....... +.+
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~-N~l~gl~~A~~---------~~~Pvl~I~G~~~~~~~~~~ 116 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFL-NGLTALANATT---------NCFPMIMISGSSEREIVDLQ 116 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHH-HHHHHHHHHHh---------cCCCEEEEEccCCccccccc
Confidence 467777 6999999999999998 4433333 4445444 34455543222 689999986432211 111
Q ss_pred -CCchhHHH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEecccccc
Q 017714 160 -AQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (367)
Q Consensus 160 -~tH~~~~~-a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~~ 210 (367)
..++..+. .+++.+-.+ .+...++.++...++.|++ .++||||-.+..+.
T Consensus 117 ~~~~q~~d~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 173 (569)
T PRK09259 117 QGDYEELDQLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVL 173 (569)
T ss_pred CCCccccchhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHh
Confidence 12312233 788887654 4445678888877777765 26899998776543
No 122
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.84 E-value=2.2 Score=44.98 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=70.3
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p~~~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
||+.+ -.|++++.+|-|.|+...+|-++ +..+..+ -++.-+.+. + ..+.||+++....... +.|.
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~-N~~~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~~~ 111 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNL-HLINGLYDA--H-------RSGAPVLAIASHIPSAQIGSGF 111 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHH-HHHHHHHHH--H-------hcCCCEEEEeCCCCccccCCCC
Confidence 57777 69999999999999995555443 3334444 344444432 2 2689999986432222 3333
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~~~~ 209 (367)
.|......+++.+--+ .+...+++++...++.|++ .++||+|-.+...
T Consensus 112 ~Qe~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv 163 (578)
T PRK06546 112 FQETHPDRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDI 163 (578)
T ss_pred ccccChhhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhh
Confidence 3321223678776443 4566677777776666654 5789999877653
No 123
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=90.75 E-value=3.1 Score=37.33 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCceeechh-hH-HHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI-aE-~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..+- .= -..+..|.|++++. -++++++..- .|.+ ....+-. +.. .++|++++.- + +...
T Consensus 43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m-~~~eL~T-a~~--------~~lpvi~vV~NN~~yg~ 112 (196)
T cd02013 43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGM-SMMEIMT-AVR--------HKLPVTAVVFRNRQWGA 112 (196)
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhc-cHHHHHH-HHH--------hCCCeEEEEEECchhHH
Confidence 788886421 11 33566788877763 4677766532 2333 3333333 332 5788877753 3 2211
Q ss_pred -C------CC-----CC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc---CCCcEEEe
Q 017714 157 -G------VG-----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (367)
Q Consensus 157 -g------~G-----~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~---~~~Pv~ir 204 (367)
. .+ .. +.-.+..+-+++ |+.-..-.++.|+..+++++++ .++|++|-
T Consensus 113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie 175 (196)
T cd02013 113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE 175 (196)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 01 01 111122455555 6777788999999999999998 78999984
No 124
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=90.71 E-value=4 Score=35.91 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=64.8
Q ss_pred CCceeechh-hH-HHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI-aE-~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..+. .= -.+++.|.|++++. .++++++..- .|.+-. ..+.+ +.. .++|++++.- ++ ...
T Consensus 41 ~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~-~el~t-~~~--------~~lp~~~iv~NN~~~~~ 110 (178)
T cd02014 41 KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLM-GDLIT-AVK--------YNLPVIVVVFNNSDLGF 110 (178)
T ss_pred CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhH-HHHHH-HHH--------hCCCcEEEEEECCchhH
Confidence 678887543 22 22556777777764 3566665421 233332 22322 333 5788777643 32 210
Q ss_pred --------C---CCCC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 --------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 --------g---~G~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+.. +...+..+..+. |+..+...++.|+...++++++.++|++|-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~lie 169 (178)
T cd02014 111 IKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVID 169 (178)
T ss_pred HHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 1111 111233566666 778888899999999999999999999884
No 125
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=90.38 E-value=4.4 Score=38.63 Aligned_cols=142 Identities=12% Similarity=-0.005 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCcee-echhhHHHHHHHHHHHhcc-CCeeEEeccccc
Q 017714 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL-DTPITEAGFTGIGVGAAYY-GLKPVVEFMTFN 118 (367)
Q Consensus 41 ~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i-~~GIaE~~~vg~AaGlA~~-G~~p~~~~~~~~ 118 (367)
..+.++|.++....+++++. .|++-+. .+..-+.++++. -.| .++.+|.|++++ --++++++. .+
T Consensus 29 ~~v~~al~e~~~~~~d~ivv-sdiGc~~-------~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~-GD 95 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCVV-SGIGCSG-------RFSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVS-GD 95 (277)
T ss_pred HHHHHHHHHhcCCCCCEEEE-eCcCHHH-------HhhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEE-Cc
Confidence 34557776664334566554 3666321 112223245555 344 677788888886 346677665 44
Q ss_pred HHHH-HHHHHHHHHhhccccCCCCccccEEEEeC-C---CCCCC-------CCC-C----ch---h--HHHHHHhcCCCc
Q 017714 119 FSMQ-AIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-------VGA-Q----HS---H--CYAAWYASVPGL 176 (367)
Q Consensus 119 f~~r-a~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-------~G~-t----H~---~--~~~a~~~~iP~~ 176 (367)
.... .-.|-...++. .++|++++.- + |...+ .|. + +. . .+..+..+. |+
T Consensus 96 G~f~~~g~~el~ta~r--------~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G~ 166 (277)
T PRK09628 96 GDGLAIGGNHTIHGCR--------RNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-GA 166 (277)
T ss_pred hHHHHhhHHHHHHHHH--------hCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-CC
Confidence 3221 11222222333 5788877753 2 22111 010 0 00 0 112333333 44
Q ss_pred EE---EeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 177 KV---LSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 177 ~V---~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.- ....+++|+..+++.|++.++|++|-
T Consensus 167 ~~va~~~v~~~~el~~al~~Al~~~Gp~lIe 197 (277)
T PRK09628 167 SFVARESVIDPQKLEKLLVKGFSHKGFSFFD 197 (277)
T ss_pred ceEEEEccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 43 57899999999999999999999984
No 126
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=90.22 E-value=9 Score=34.26 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=23.5
Q ss_pred EeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 179 LSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 179 ~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
....++.|+...++++++.++|++|-
T Consensus 155 ~~v~~~~el~~al~~al~~~gp~vIe 180 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQHKGFSFVE 180 (193)
T ss_pred EecCCHHHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999984
No 127
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=90.18 E-value=4 Score=36.87 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
++.+++ |+.-....+++|+..+++++++.++|++|-
T Consensus 145 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 180 (205)
T cd02003 145 ANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV 180 (205)
T ss_pred HHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 455555 677777899999999999999999999884
No 128
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.12 E-value=4.7 Score=42.64 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=67.9
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~-G~~p~~-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=||+.+ -.|++++.+|-|.|+. |...++ .++.+..+ -++.-|.+ |+. .++||+++...-... +.+
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-n~~~gi~~--A~~-------d~vPvl~I~G~~~~~~~~~~ 111 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI-HLLNGLYD--AKL-------DHVPVVAIVGQQARAALGGH 111 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH-HHHHHHHH--HHh-------cCCCEEEEecCCchhhcCCC
Confidence 467777 6999999999999987 543333 34444443 34454433 222 689999986422211 222
Q ss_pred CCchhHHHHHHhcCC-CcEEEeeCCHHHHHHHHHHhH----cCCCcEEEeccccc
Q 017714 160 AQHSHCYAAWYASVP-GLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELL 209 (367)
Q Consensus 160 ~tH~~~~~a~~~~iP-~~~V~~P~d~~e~~~~~~~a~----~~~~Pv~ir~~~~~ 209 (367)
..+.....++++.+- -+ .....+++++...++.|+ ..++||+|..|..+
T Consensus 112 ~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 112 YQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred CCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 222112236777764 22 345566666666665555 45689999887654
No 129
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=90.05 E-value=4.4 Score=35.88 Aligned_cols=111 Identities=23% Similarity=0.225 Sum_probs=64.7
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..+- +=-..++.|.|++++. -+++++...- .|.+ ....+-. ++. .++|++++.- ++ ...
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~-~~~eL~t-a~~--------~~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQM-NIQELAT-AAQ--------YNLPVKIVILNNGSLGM 109 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhc-cHHHHHH-HHH--------hCCCeEEEEEECCccHH
Confidence 788887532 1123566788888764 3566665432 2333 2333332 333 5788877653 32 210
Q ss_pred ----------C-C-CCCc-hh-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ----------G-V-GAQH-SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ----------g-~-G~tH-~~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ . +... .. .+..+.+++ |+.-....++.|+.++++++.+.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 170 (186)
T cd02015 110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD 170 (186)
T ss_pred HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 0111 11 223455555 666777788999999999999989999984
No 130
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=89.86 E-value=3.3 Score=43.66 Aligned_cols=111 Identities=15% Similarity=0.043 Sum_probs=71.0
Q ss_pred ceeechhhHHHHHHHHHHHhccC-CeeEE--ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYG-LKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G-~~p~~--~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
|++.+ -.|++++.+|-|.|+.. .+|-+ .|..+.+++ ++--+.+. + ..++||+++...-.+. +.+
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N-~~~gla~A--~-------~~~~Pvl~I~G~~~~~~~~~~ 111 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD-MITGLYSA--S-------ADSIPILCITGQAPRARLHKE 111 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH-HHHHHHHH--h-------hcCCCEEEEecCCCccccCCC
Confidence 67776 68999999999999974 55433 355555443 44444432 2 2689999986432221 222
Q ss_pred CCchhH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccccc
Q 017714 160 AQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 160 ~tH~~~-~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
. + |. | .++++.+--+ .....+++++..+++.|++ .++||+|-.++..
T Consensus 112 ~-~-q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 112 D-F-QAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred c-c-cccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 2 3 33 2 3788887644 3444678888888888876 2589999877654
No 131
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=89.56 E-value=10 Score=35.23 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHhcC--CCcEEEeeCCHHHHHHHHHHhHc-CCCcEEEe
Q 017714 168 AWYASV--PGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL 204 (367)
Q Consensus 168 a~~~~i--P~~~V~~P~d~~e~~~~~~~a~~-~~~Pv~ir 204 (367)
.+.+++ +......+.++.|+..+++++++ .++|.+|-
T Consensus 160 ~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~ 199 (237)
T cd02018 160 LIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIH 199 (237)
T ss_pred HHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 455554 44443459999999999999998 99999984
No 132
>PLN02573 pyruvate decarboxylase
Probab=89.32 E-value=9.9 Score=40.05 Aligned_cols=151 Identities=17% Similarity=0.103 Sum_probs=81.6
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhC---CCceeechhhHHHHHHHHHHHhcc-CCee
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYG---PERVLDTPITEAGFTGIGVGAAYY-GLKP 110 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~---p~R~i~~GIaE~~~vg~AaGlA~~-G~~p 110 (367)
..++..+++.+.|.+.. -+.|+.+-.+ .. ..|.+... .=||+.+ -.|++++.+|-|.|+. | ..
T Consensus 14 ~~~~~a~~l~~~L~~~G--v~~vFGvpG~------~~---~~l~dal~~~~~i~~i~~-rhE~~A~~mAdgyaR~tg-~g 80 (578)
T PLN02573 14 SDATLGRHLARRLVEIG--VTDVFSVPGD------FN---LTLLDHLIAEPGLNLIGC-CNELNAGYAADGYARARG-VG 80 (578)
T ss_pred ccccHHHHHHHHHHHcC--CCEEEECCCC------ch---HHHHHHHhhcCCceEEEe-CCHHHHHHHHHHHHHHhC-CC
Confidence 34556666666665421 2334444321 11 23443330 1256666 7999999999999987 7 55
Q ss_pred EE-ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCC-CCCchh-------HHHHHHhcCCCcEEE
Q 017714 111 VV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGV-GAQHSH-------CYAAWYASVPGLKVL 179 (367)
Q Consensus 111 ~~-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~-G~tH~~-------~~~a~~~~iP~~~V~ 179 (367)
++ .++.+..+. +.--+.+..+ .+.||+++...-.. .+. +..|+. ...++++.+--+ ..
T Consensus 81 v~~~t~GpG~~n-~~~gla~A~~---------d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~-s~ 149 (578)
T PLN02573 81 ACVVTFTVGGLS-VLNAIAGAYS---------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QA 149 (578)
T ss_pred eEEEecCccHHH-HHHHHHHHHH---------hCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEE-EE
Confidence 44 444454443 4455443222 68999998642111 122 222311 112677766433 33
Q ss_pred eeCCHHHHHHHHH----HhHcCCCcEEEeccccc
Q 017714 180 SPYSSEDARGLLK----AAIRDPDPVVFLENELL 209 (367)
Q Consensus 180 ~P~d~~e~~~~~~----~a~~~~~Pv~ir~~~~~ 209 (367)
...+++++...++ .|+..++||||-.+..+
T Consensus 150 ~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 150 VINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred EeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 3455655555554 44456789999877654
No 133
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=88.83 E-value=5.2 Score=34.91 Aligned_cols=111 Identities=21% Similarity=0.204 Sum_probs=61.8
Q ss_pred CCceeechhhH-HHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC-
Q 017714 83 PERVLDTPITE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA- 156 (367)
Q Consensus 83 p~R~i~~GIaE-~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~- 156 (367)
|.+|+..+-.= -..+..|.|++++- -+++++...- .|. .....+. .+.. .++|++++.- + +...
T Consensus 40 ~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~-~~~~el~-ta~~--------~~~p~~~iV~nN~~~~~~ 109 (178)
T cd02002 40 PGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFM-YTIQALW-TAAR--------YGLPVTVVILNNRGYGAL 109 (178)
T ss_pred CCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhh-ccHHHHH-HHHH--------hCCCeEEEEEcCccHHHH
Confidence 78888764311 12345777777663 4555555421 232 2223332 2332 4788877753 2 2110
Q ss_pred --------CC--------CC---CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 --------GV--------GA---QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 --------g~--------G~---tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+. +. .+.-.+..+...+ |+..+...+++|+.++++++.+.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi~ 175 (178)
T cd02002 110 RSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALAEGGPALIE 175 (178)
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 00 0111223455555 666777788999999999999988999883
No 134
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=88.34 E-value=2.5 Score=38.17 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=56.5
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhc--CCceEEEEeeec--------CC--CCHHHHHHHHhcCCeEEEEeCCCCCCch
Q 017714 239 KDVTITAFSK-IVGLSLKAAEILAKE--GISAEVINLRSI--------RP--LDRSTINASVRKTNRLVTVEEGFPQHGV 305 (367)
Q Consensus 239 ~di~Iia~G~-~v~~al~Aa~~L~~~--Gi~v~vi~~~~i--------~P--~d~~~l~~~~~~~~~ivvvEe~~~~GGl 305 (367)
.|+++.++|. .+.+++.|++.|++. ++++++||+--| .| ++.+.+.++.-+.+.||+. +-|.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa-----fHGY 109 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA-----FHGY 109 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE-----ESSE
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE-----cCCC
Confidence 5899999996 558999999999998 999998887655 22 6667787777667777762 3456
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEecCCCC
Q 017714 306 GAEICASVIEESFGYLDAPVERIAGADVP 334 (367)
Q Consensus 306 g~~v~~~l~~~~~~~~~~~v~~ig~~d~~ 334 (367)
-..|-..+..+. ...++..-|-.++.
T Consensus 110 p~~i~~L~~~R~---n~~~~hV~GY~EeG 135 (203)
T PF09363_consen 110 PWLIHRLLFGRP---NHDRFHVHGYREEG 135 (203)
T ss_dssp HHHHHHHTTTST---TGGGEEEEEE-S--
T ss_pred HHHHHHHhcCCC---CCCCeEEEeeccCC
Confidence 677777765542 12456666776643
No 135
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=88.16 E-value=9 Score=36.71 Aligned_cols=143 Identities=17% Similarity=0.078 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeech-h--hHHHHHHHHHHHhccC-CeeEEec
Q 017714 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP-I--TEAGFTGIGVGAAYYG-LKPVVEF 114 (367)
Q Consensus 39 ~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~G-I--aE~~~vg~AaGlA~~G-~~p~~~~ 114 (367)
.-.++.++|.++....++.++++ |++-++- + + +|++.+ . .=-.++.+|.|++++. -++++++
T Consensus 28 il~~l~~al~~l~~~p~d~vvvs-diGc~~~-----------~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i 93 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVVS-GIGCSGR-----------L-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV 93 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEe-CCccccc-----------c-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE
Confidence 55666777766654455655554 5653210 1 2 344432 1 1134556777877763 4666666
Q ss_pred cccc-HHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C---CCCCC-C------CC----C-ch-----hHHHHHHhc
Q 017714 115 MTFN-FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-V------GA----Q-HS-----HCYAAWYAS 172 (367)
Q Consensus 115 ~~~~-f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-~------G~----t-H~-----~~~~a~~~~ 172 (367)
..-. +++-....+.+ +++ .++|++++.- + |...+ . |. + +. ....++..+
T Consensus 94 ~GDG~~f~mg~~eL~t-A~r--------~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a 164 (286)
T PRK11867 94 TGDGDALAIGGNHFIH-ALR--------RNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALG 164 (286)
T ss_pred eCccHHHhCCHHHHHH-HHH--------hCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHH
Confidence 5322 23444445544 333 5777776642 1 21111 1 10 0 00 012244444
Q ss_pred CC--CcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 173 VP--GLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 173 iP--~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.. .+......+++|+..+++.|++.++|++|-
T Consensus 165 ~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIe 198 (286)
T PRK11867 165 AGATFVARGFDSDVKQLTELIKAAINHKGFSFVE 198 (286)
T ss_pred CCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 42 233335789999999999999999999983
No 136
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=87.94 E-value=2.7 Score=43.99 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=68.1
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (367)
||+.+ ..|++++.+|-|.|+...+| ++.|+.+..+ -++.-|.+ |+ ..++||+++..+.... +.|.
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~-N~l~~i~~--A~-------~~~~Pvl~IsG~~~~~~~~~~~ 117 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAVA-NLYPAVIE--AG-------LTGVPLIVLTADRPPELRDCGA 117 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHHH-hhhHHHHH--Hh-------hcCCcEEEEECCCCHHHhcCCC
Confidence 77777 79999999999999874443 4556555444 45555443 22 2689999986432222 3344
Q ss_pred CchhHHHHHHhcCCCcEEEeeCCHH-----HHHHHHHH---hHc-CCCcEEEecccc
Q 017714 161 QHSHCYAAWYASVPGLKVLSPYSSE-----DARGLLKA---AIR-DPDPVVFLENEL 208 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~~P~d~~-----e~~~~~~~---a~~-~~~Pv~ir~~~~ 208 (367)
.|.....++++.+-...+-.|.... .+..+++. +.. .++||+|-.+..
T Consensus 118 ~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 118 NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 3322224788877655565665521 12334555 333 478999987654
No 137
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=87.85 E-value=3.8 Score=39.52 Aligned_cols=34 Identities=24% Similarity=-0.002 Sum_probs=30.4
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 171 ~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
..+|-+....|.++.++...++.|++.++|.+|-
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~ 203 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIH 203 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3467788899999999999999999999999984
No 138
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=87.37 E-value=3.7 Score=41.53 Aligned_cols=114 Identities=19% Similarity=0.144 Sum_probs=65.2
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCe-eEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~-p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (367)
|++.+ ..|+++.-+|-|.|+. |.. .++.|+.+..++ ++--+.+ ++ ..++||+++...-.. .+.|.
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N-~l~gl~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~ 108 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVAN-LLPAVIE--AS-------YSGVPLIVLTADRPPELRGCGA 108 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhh-hhHHHHH--hc-------ccCCcEEEEeCCCCHHHhCCCC
Confidence 77777 7999999999999998 533 344455444433 3344332 22 268999998643221 12233
Q ss_pred CchhHHHHHHhcCCCcEEE--eeCC-------HHHHHHHHHHhHc-CCCcEEEeccccc
Q 017714 161 QHSHCYAAWYASVPGLKVL--SPYS-------SEDARGLLKAAIR-DPDPVVFLENELL 209 (367)
Q Consensus 161 tH~~~~~a~~~~iP~~~V~--~P~d-------~~e~~~~~~~a~~-~~~Pv~ir~~~~~ 209 (367)
.+......+++.+--+..- .|.+ ++.+.++++.|.. .++||+|-.+...
T Consensus 109 ~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 109 NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 2211223678776544333 3443 2334555555555 3689999877543
No 139
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=87.06 E-value=11 Score=39.42 Aligned_cols=114 Identities=15% Similarity=0.053 Sum_probs=66.4
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCCC
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~~-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (367)
|++.+ -.|+++.-+|-|.|+. |...++ .+..+..+ -++.-|.. |+ ..++||+++...-.. .+.+.
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-n~~~gia~--A~-------~~~~Pvl~i~g~~~~~~~~~~~ 108 (535)
T TIGR03394 40 PLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAF-NMVNAIAG--AY-------AEKSPVVVISGAPGTTEGNAGL 108 (535)
T ss_pred eEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHH-hhhhHHHH--Hh-------hcCCCEEEEECCCCcccccCCc
Confidence 78886 7999999999999998 544333 34444433 34444432 22 268999998643221 12232
Q ss_pred --Cchh--H-HH-HHHhcCCCcEEEeeCCHHH----HHHHHHHhHcCCCcEEEecccccc
Q 017714 161 --QHSH--C-YA-AWYASVPGLKVLSPYSSED----ARGLLKAAIRDPDPVVFLENELLY 210 (367)
Q Consensus 161 --tH~~--~-~~-a~~~~iP~~~V~~P~d~~e----~~~~~~~a~~~~~Pv~ir~~~~~~ 210 (367)
+|+. - +. .+++.+--+.. ...++.+ +..+++.|+..++||+|-.+..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~vtk~~~-~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv~ 167 (535)
T TIGR03394 109 LLHHQGRTLDSQFQVFKEVTCDQA-VLDDPATAPAEIARVLGSARELSRPVYLEIPRDMV 167 (535)
T ss_pred eeEeeccchHHHHHhhhhheEEEE-EeCChHHhHHHHHHHHHHHHHCCCCEEEEechhhc
Confidence 2422 1 22 67776643322 2344444 445555555668999998776543
No 140
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=86.72 E-value=5.8 Score=41.30 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=70.5
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCC-
Q 017714 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG- 159 (367)
Q Consensus 85 R~i~~GIaE~~~vg~AaGlA~~-G~~p~~~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G- 159 (367)
||+.+ -.|++++.+|-|.|+. | +.++. +..+.+++ ++--+.+ |+ ..++||+++...-.. .+.+
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n-~~~gla~--A~-------~d~~Pvl~I~G~~~~~~~~~~~ 108 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELS-AINGIAG--SY-------AEHLPVIHIVGAPGTAAQQRGE 108 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHH-HhhHHHH--Hh-------hccCCEEEEECCCCcchhhcCc
Confidence 67777 7999999999999998 6 55543 55555443 4444443 22 268999998642111 0111
Q ss_pred -------C-CchhHHHHHHhcCCCcE-EEeeCC-HHHHHHHHHHhHcCCCcEEEeccccccC
Q 017714 160 -------A-QHSHCYAAWYASVPGLK-VLSPYS-SEDARGLLKAAIRDPDPVVFLENELLYG 211 (367)
Q Consensus 160 -------~-tH~~~~~a~~~~iP~~~-V~~P~d-~~e~~~~~~~a~~~~~Pv~ir~~~~~~~ 211 (367)
. .+ |....+++.+--+. +..|.+ +.++.++++.|+..++||+|-.++.+..
T Consensus 109 ~~~~~~~~~~~-q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~ 169 (539)
T TIGR03393 109 LLHHTLGDGDF-RHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAA 169 (539)
T ss_pred eeeeecCCCch-HHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence 0 12 22235555543221 224556 7888889999988889999988766543
No 141
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=86.61 E-value=6.7 Score=41.07 Aligned_cols=111 Identities=21% Similarity=0.195 Sum_probs=66.8
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEeccc-ccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~-~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..+- +=-..+..|.|++++. -++++++.. ..|.+.+-| +-. +.. .++|++++.- ++ ...
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~e-L~t-a~~--------~~lpvi~vV~NN~~~g~ 478 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQE-MAT-AAE--------NQLDVKIILMNNEALGL 478 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHH-HHH-HHH--------hCCCeEEEEEeCCcccc
Confidence 788997642 3334667888888774 355555543 234443323 332 333 5788777643 32 211
Q ss_pred ---------C---CCCC--chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g---~G~t--H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+.. +...+.++.+++ |+.-+...+.+|+..+++.+++.++|++|-
T Consensus 479 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (564)
T PRK08155 479 VHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIH 539 (564)
T ss_pred cHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 111233566666 778888999999999999999989999984
No 142
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=86.13 E-value=4.9 Score=34.23 Aligned_cols=109 Identities=24% Similarity=0.315 Sum_probs=64.0
Q ss_pred CCceeech--hhHHHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCC
Q 017714 83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAA 155 (367)
Q Consensus 83 p~R~i~~G--IaE~~~vg~AaGlA~~G-~~p~~~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~ 155 (367)
|.||+..+ -+=-.+++.|.|++++. -++++++. .+ |..- ...+.. +.. .++|++++.- + +..
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~-GDG~f~~~-~~el~t-a~~--------~~~~v~~vv~nN~~~~ 86 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAIT-GDGSFLMS-LQELAT-AVR--------YGLPVVIVVLNNGGYG 86 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEE-EHHHHHHH-GGGHHH-HHH--------TTSSEEEEEEESSBSH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEec-CCcceeec-cchhHH-Hhh--------ccceEEEEEEeCCcce
Confidence 78888732 24445677788888773 46666654 33 3322 344433 332 4678777642 2 211
Q ss_pred C------CCCC----------CchhHHHHHHhcCCCcEEEeeCCH--HHHHHHHHHhHcCCCcEEE
Q 017714 156 A------GVGA----------QHSHCYAAWYASVPGLKVLSPYSS--EDARGLLKAAIRDPDPVVF 203 (367)
Q Consensus 156 ~------g~G~----------tH~~~~~a~~~~iP~~~V~~P~d~--~e~~~~~~~a~~~~~Pv~i 203 (367)
. ..+. .|...+..+.+++ |+..+.-.++ +|+..+++++++.++|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 87 MTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred EeccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 0 0011 1212334666666 6666665566 9999999999999999987
No 143
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=85.92 E-value=5.9 Score=34.83 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=24.5
Q ss_pred HHHhcC--CCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 168 AWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 168 a~~~~i--P~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.+.+++ +...|..|.+-+++...++.+++.++|.+|.
T Consensus 135 ~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~ 173 (178)
T cd02008 135 ALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVII 173 (178)
T ss_pred HHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEEE
Confidence 455554 3444444555555558889999889999884
No 144
>PRK06163 hypothetical protein; Provisional
Probab=85.91 E-value=11 Score=34.24 Aligned_cols=148 Identities=13% Similarity=0.081 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEecccc
Q 017714 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTF 117 (367)
Q Consensus 39 ~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~~~ 117 (367)
-|..+-+.|.+.+.. +++++. |.+... +. -+...+.|.+|+..| +=-..+..|.|++++. -++++++..-
T Consensus 14 ~~~~~i~~l~~~l~~-~~~iv~--D~G~~~--~~---~~~~~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GD 84 (202)
T PRK06163 14 NRFDLTCRLVAKLKD-EEAVIG--GIGNTN--FD---LWAAGQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGD 84 (202)
T ss_pred CHHHHHHHHHHhcCC-CCEEEE--CCCccH--HH---HHHhhcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcc
Confidence 344555556555543 345443 555311 11 111122377888544 2233445778887764 4677776532
Q ss_pred cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCC--CCCC--CCchhHHHHHHhcCCCcE-EEeeCCHHHHHHH
Q 017714 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAA--AGVG--AQHSHCYAAWYASVPGLK-VLSPYSSEDARGL 190 (367)
Q Consensus 118 ~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~--~g~G--~tH~~~~~a~~~~iP~~~-V~~P~d~~e~~~~ 190 (367)
.-.+.....+- .++.. .++|++++.- + +.. .+.. ..+.-.+.++.+++ |+. -+...+.+|+..+
T Consensus 85 G~f~m~~~eL~-Ta~~~-------~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~a 155 (202)
T PRK06163 85 GSLLMQLGALG-TIAAL-------APKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEAL 155 (202)
T ss_pred hHHHHHHHHHH-HHHHh-------cCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHH
Confidence 21222222222 22210 3567666642 2 222 1111 11211233555655 564 5677899999999
Q ss_pred HHHhHcCCCcEEEe
Q 017714 191 LKAAIRDPDPVVFL 204 (367)
Q Consensus 191 ~~~a~~~~~Pv~ir 204 (367)
++.+++.++|.+|-
T Consensus 156 l~~a~~~~~p~lIe 169 (202)
T PRK06163 156 VDQALSGPGPSFIA 169 (202)
T ss_pred HHHHHhCCCCEEEE
Confidence 99999999999874
No 145
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=85.69 E-value=20 Score=31.65 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=58.2
Q ss_pred CCceeechhhHHHHHHHHHHHhccCCeeEEecccccHH-HHHHHHHHHHHhhccccCCCCcc-ccEEEEe-CC-CCCC-C
Q 017714 83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQIS-VPIVFRG-PN-GAAA-G 157 (367)
Q Consensus 83 p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~~f~-~ra~dqi~~~~a~~~~~~~~~~~-~pvv~~~-~~-G~~~-g 157 (367)
|.+|+..|.- -..+..|.|++++..++++++. .+.. +.....+ ..++. .+ .|++++. .+ +... +
T Consensus 35 ~~~~~~~g~m-G~~lp~AiGaala~~~~vv~i~-GDG~f~m~~~el-~ta~~--------~~~~~l~vvV~NN~~~~~~~ 103 (179)
T cd03372 35 PLNFYMLGSM-GLASSIGLGLALAQPRKVIVID-GDGSLLMNLGAL-ATIAA--------EKPKNLIIVVLDNGAYGSTG 103 (179)
T ss_pred ccccccccch-hhHHHHHHHHHhcCCCcEEEEE-CCcHHHhCHHHH-HHHHH--------cCCCCEEEEEEcCccccccC
Confidence 6777754321 2344578888877547788775 3322 2222222 22332 33 3454443 33 3221 1
Q ss_pred -C--CCCchhHHHHHHhcCCCcEEEeeC-CHHHHHHHHHHhHcCCCcEEEe
Q 017714 158 -V--GAQHSHCYAAWYASVPGLKVLSPY-SSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 158 -~--G~tH~~~~~a~~~~iP~~~V~~P~-d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
. ...+...+..+.+++ |+...... +++|+..+++++. ++|.+|-
T Consensus 104 ~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~--~gp~lIe 151 (179)
T cd03372 104 NQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL--DGPSFIH 151 (179)
T ss_pred CCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc--CCCEEEE
Confidence 0 111112233555555 55556666 9999999999998 7899874
No 146
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=85.35 E-value=11 Score=36.48 Aligned_cols=34 Identities=21% Similarity=0.100 Sum_probs=30.4
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 171 ~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
...|-+....|.++.|+...++.|.+.++|.+|-
T Consensus 174 ~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~ 207 (299)
T PRK11865 174 HGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQ 207 (299)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4577788889999999999999999999999984
No 147
>PRK06154 hypothetical protein; Provisional
Probab=84.38 E-value=12 Score=39.31 Aligned_cols=149 Identities=19% Similarity=0.106 Sum_probs=87.1
Q ss_pred ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-C-CeeEE
Q 017714 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-G-LKPVV 112 (367)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~-G-~~p~~ 112 (367)
++++..+++.+.|.++ +-+.++.-+ . . .+.+.+.+ - .=|++.+ -.|++++.+|.|.|+. | .+|-+
T Consensus 18 ~~~~~a~~l~~~L~~~---GV~~vFGip--~----~-~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv 84 (565)
T PRK06154 18 KTMKVAEAVAEILKEE---GVELLFGFP--V----N-ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGV 84 (565)
T ss_pred CcccHHHHHHHHHHHc---CCCEEEeCc--C----H-HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEE
Confidence 4566677777777653 333333222 1 1 22244432 2 3477777 7999999999999996 3 35433
Q ss_pred --ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCC--CCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHH
Q 017714 113 --EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDAR 188 (367)
Q Consensus 113 --~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~ 188 (367)
.+..+.+++ ++--+.+ |+ ..+.||+++...... .+.+..+.+ ..+++.+--+ .....+++++.
T Consensus 85 ~~~t~GPG~~N-~~~gla~--A~-------~~~~Pvl~i~G~~~~~~~~~~~~~d~--~~~~~~vtk~-~~~v~~~~~~~ 151 (565)
T PRK06154 85 FAVQYGPGAEN-AFGGVAQ--AY-------GDSVPVLFLPTGYPRGSTDVAPNFES--LRNYRHITKW-CEQVTLPDEVP 151 (565)
T ss_pred EEECCCccHHH-HHHHHHH--Hh-------hcCCCEEEEeCCCCcccccCCCCcch--hhhHhhccee-EEECCCHHHHH
Confidence 455565544 4444433 22 268999998632111 122222312 3677776543 45667788877
Q ss_pred HHHHHhHc-----CCCcEEEeccccc
Q 017714 189 GLLKAAIR-----DPDPVVFLENELL 209 (367)
Q Consensus 189 ~~~~~a~~-----~~~Pv~ir~~~~~ 209 (367)
..++.|++ .++||||-.+...
T Consensus 152 ~~i~~A~~~A~s~~~GPV~l~iP~Dv 177 (565)
T PRK06154 152 ELMRRAFTRLRNGRPGPVVLELPVDV 177 (565)
T ss_pred HHHHHHHHHHhcCCCceEEEecchHH
Confidence 77777665 3689999877654
No 148
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=84.23 E-value=26 Score=31.18 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=59.9
Q ss_pred CCceeechhhHHHHHHHHHHHhccC-CeeEEecccccHH-HHHHHHHHHHHhhccccCCCCccc-cEEEEe-CC-CCCC-
Q 017714 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISV-PIVFRG-PN-GAAA- 156 (367)
Q Consensus 83 p~R~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~~~~f~-~ra~dqi~~~~a~~~~~~~~~~~~-pvv~~~-~~-G~~~- 156 (367)
|.+|+..|- =-..++.|.|++++. -++++++. .+.. +.....+ ..++. .++ |++++. .+ +...
T Consensus 41 ~~~~~~~g~-mG~~lpaAiGaala~p~~~Vv~i~-GDG~f~m~~~eL-~ta~~--------~~l~~i~ivV~NN~~yg~~ 109 (188)
T cd03371 41 AQDFLTVGS-MGHASQIALGIALARPDRKVVCID-GDGAALMHMGGL-ATIGG--------LAPANLIHIVLNNGAHDSV 109 (188)
T ss_pred cCceeecCc-cccHHHHHHHHHHhCCCCcEEEEe-CCcHHHhhccHH-HHHHH--------cCCCCcEEEEEeCchhhcc
Confidence 488987532 122456777877663 46666665 3322 2222222 22332 344 444443 33 3211
Q ss_pred CCCCC--chhHHHHHHhcCCCcEE-EeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 GVGAQ--HSHCYAAWYASVPGLKV-LSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 g~G~t--H~~~~~a~~~~iP~~~V-~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+...+ +...+..+..++ |+.- ....++.|+..+++++++.++|++|-
T Consensus 110 ~~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIe 159 (188)
T cd03371 110 GGQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIE 159 (188)
T ss_pred CCcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 10111 112233555555 5543 45679999999999999989999985
No 149
>PRK08617 acetolactate synthase; Reviewed
Probab=83.71 E-value=8.5 Score=40.18 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=64.7
Q ss_pred hCCCceeechhhHHHHHH----HHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC
Q 017714 81 YGPERVLDTPITEAGFTG----IGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG 153 (367)
Q Consensus 81 ~~p~R~i~~GIaE~~~vg----~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G 153 (367)
+.|.+|+..+ -...+| .|.|++++. -++++++..= .|++- ...+-. +.. .++|++++.- ++
T Consensus 402 ~~p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~-~~eL~T-a~~--------~~lpv~~vV~NN~ 469 (552)
T PRK08617 402 YEPRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFS-AMELET-AVR--------LKLNIVHIIWNDG 469 (552)
T ss_pred cCCCeEEecC--ccccccccccHHHhhHhhcCCCcEEEEEechHHhhh-HHHHHH-HHH--------hCCCeEEEEEECC
Confidence 3377877642 123555 888888763 3566666432 23333 333322 332 5888876542 33
Q ss_pred -CCC---------C--CCCC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 154 -AAA---------G--VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 154 -~~~---------g--~G~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
... + .|.. +.-.+.++.+++ |+.-+...+++|+..+++++++.++|.+|-
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lie 532 (552)
T PRK08617 470 HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTSPDELEPVLREALATDGPVVID 532 (552)
T ss_pred ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 211 0 0111 111123455555 677889999999999999999989999984
No 150
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=83.07 E-value=7.3 Score=37.24 Aligned_cols=146 Identities=17% Similarity=0.086 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEeccc
Q 017714 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMT 116 (367)
Q Consensus 38 ~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~~ 116 (367)
..-.++.++|.++.-..++.++.+ |.+.++ ....-+.+..+.-. =-.++.+|.|++++. -++++++.
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivvs-diG~~~-------~~~~~~~~~~~~~~---mG~alp~AiGaklA~pd~~VVai~- 85 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIVS-GIGQAA-------KMPHYINVNGFHTL---HGRAIPAATAVKATNPELTVIAEG- 85 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEe-CchHhh-------hHHHHccCCCCCcc---cccHHHHHHHHHHHCCCCcEEEEE-
Confidence 456778888876644445555544 554321 11111112222111 123566777777775 47788765
Q ss_pred ccHHHHH--HHHHHHHHhhccccCCCCccccEEEEeC-C---CCCCC-------CC---------CCchh-HHHHHHhc-
Q 017714 117 FNFSMQA--IDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-------VG---------AQHSH-CYAAWYAS- 172 (367)
Q Consensus 117 ~~f~~ra--~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-------~G---------~tH~~-~~~a~~~~- 172 (367)
.+..... +..+.+ +++ .++|++++.- + |...+ .| ..... .+..+..+
T Consensus 86 GDG~~~~iG~~eL~t-A~r--------~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~ 156 (280)
T PRK11869 86 GDGDMYAEGGNHLIH-AIR--------RNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIAL 156 (280)
T ss_pred CchHHhhCcHHHHHH-HHH--------hCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHC
Confidence 4443322 455544 333 4778777642 1 21111 00 00000 11233333
Q ss_pred -CCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 173 -VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 173 -iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.+.+....+.++.|+..+++.|++.++|.+|-
T Consensus 157 G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIe 189 (280)
T PRK11869 157 DASFVARTFSGDIEETKEILKEAIKHKGLAIVD 189 (280)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 33333334999999999999999999999984
No 151
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=81.80 E-value=13 Score=34.82 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcc------CCeeEEecccccH-HH--HHHHHHHHHHhhccccCCCCcccc-EEEEeCC-CCCCCCCCCch
Q 017714 95 GFTGIGVGAAYY------GLKPVVEFMTFNF-SM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPN-GAAAGVGAQHS 163 (367)
Q Consensus 95 ~~vg~AaGlA~~------G~~p~~~~~~~~f-~~--ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~-G~~~g~G~tH~ 163 (367)
..++.|.|+|++ ..++++ +. .+. ++ ..++-+.. ++. .++| ++++..+ +... .+.++.
T Consensus 109 ~gl~~avG~Ala~~~~~~~~~v~~-i~-GDG~~~~G~~~eal~~-a~~--------~~l~~li~vvdnN~~~~-~~~~~~ 176 (255)
T cd02012 109 QGLSVAVGMALAEKLLGFDYRVYV-LL-GDGELQEGSVWEAASF-AGH--------YKLDNLIAIVDSNRIQI-DGPTDD 176 (255)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEE-EE-CcccccccHHHHHHHH-HHH--------cCCCcEEEEEECCCccc-cCcHhh
Confidence 345567777765 334444 43 332 22 24566543 332 4776 5554443 3321 233321
Q ss_pred ---hH-HHHHHhcCCCcEEEeeC--CHHHHHHHHHHhHcC-CCcEEEec
Q 017714 164 ---HC-YAAWYASVPGLKVLSPY--SSEDARGLLKAAIRD-PDPVVFLE 205 (367)
Q Consensus 164 ---~~-~~a~~~~iP~~~V~~P~--d~~e~~~~~~~a~~~-~~Pv~ir~ 205 (367)
.. ...+++++ |+.++.-. |..++..+++.+.+. ++|++|..
T Consensus 177 ~~~~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 177 ILFTEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred ccCchhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 12 23677777 88888877 999999999999876 78998853
No 152
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=81.77 E-value=7.1 Score=35.08 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=63.2
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCCC
Q 017714 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAAG 157 (367)
Q Consensus 83 p~R~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~g 157 (367)
|.+|++.+- . =-..++.|.|++++. -+|++++..=.-.+.....+-. +.. .++|+++++- + +...-
T Consensus 47 ~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~T-a~~--------~~lpviivV~NN~~yg~~ 117 (202)
T cd02006 47 PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEELAV-GAQ--------HRIPYIHVLVNNAYLGLI 117 (202)
T ss_pred CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccHHHHHH-HHH--------hCCCeEEEEEeCchHHHH
Confidence 788987642 2 122555788887763 4777776532222222333322 332 5888877653 2 22110
Q ss_pred --------C----CCCch----------hHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEe
Q 017714 158 --------V----GAQHS----------HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (367)
Q Consensus 158 --------~----G~tH~----------~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 204 (367)
. +..+. ..+ ..+-+++ |+.-+...++.|+..+++++++ .++|++|-
T Consensus 118 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~lie 190 (202)
T cd02006 118 RQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVE 190 (202)
T ss_pred HHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 0 00000 011 2344444 6777888999999999999985 68899884
No 153
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=81.51 E-value=5.8 Score=39.17 Aligned_cols=104 Identities=20% Similarity=0.153 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhccCCee-EEecccccHH--H-HHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCC--chh
Q 017714 92 TEAGFTGIGVGAAYYGLKP-VVEFMTFNFS--M-QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQ--HSH 164 (367)
Q Consensus 92 aE~~~vg~AaGlA~~G~~p-~~~~~~~~f~--~-ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~t--H~~ 164 (367)
.=-+++|.|.++-+.|... ++.+++.+.. + --++-+ |-++. .++||||++-+ +..-+..-. ...
T Consensus 141 Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal-N~A~v--------~klPvvf~ieNN~yAiSvp~~~q~~~ 211 (358)
T COG1071 141 QIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL-NFAAV--------WKLPVVFVIENNQYAISVPRSRQTAA 211 (358)
T ss_pred cccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH-HHHHH--------hcCCEEEEEecCCceeecchhhcccc
Confidence 3345566666666667433 4444444322 1 224444 33443 59999999753 322111111 111
Q ss_pred HHH---HHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEec
Q 017714 165 CYA---AWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (367)
Q Consensus 165 ~~~---a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~ 205 (367)
... +.--.||++.| .=.|...++.++++|.+ ..+|++|-.
T Consensus 212 ~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 212 EIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred hhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 111 34457999988 89999999998888886 368999953
No 154
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=81.27 E-value=13 Score=33.26 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcc----C-CeeEEecccccHH-H--HHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCCchh
Q 017714 94 AGFTGIGVGAAYY----G-LKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH 164 (367)
Q Consensus 94 ~~~vg~AaGlA~~----G-~~p~~~~~~~~f~-~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH~~ 164 (367)
-..+++|+|+|++ | -++++++. .+.. + ..++-+. .++. .+.|++++..+ +.. -.+++.
T Consensus 78 G~gl~~A~G~Ala~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~-~A~~--------~~~~li~vvdnN~~~-~~~~~~-- 144 (195)
T cd02007 78 STSISAALGMAVARDLKGKKRKVIAVI-GDGALTGGMAFEALN-NAGY--------LKSNMIVILNDNEMS-ISPNVG-- 144 (195)
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEEE-cccccccChHHHHHH-HHHH--------hCCCEEEEEECCCcc-cCCCCC--
Confidence 3445667777765 2 24455544 3332 2 4455553 3443 46788887654 332 122222
Q ss_pred HHHHHHhcCCCcEE---EeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 165 CYAAWYASVPGLKV---LSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 165 ~~~a~~~~iP~~~V---~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.....++.. ++.+ +...|.+++.++++.+.+.++|++|.
T Consensus 145 ~~~~~~~a~-G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~ 186 (195)
T cd02007 145 TPGNLFEEL-GFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLH 186 (195)
T ss_pred CHHHHHHhc-CCCccceECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 123445443 4433 46678899999999888778899985
No 155
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=80.21 E-value=4.6 Score=31.33 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=45.1
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc----CCeEEEEeCCCCCCchHHH
Q 017714 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK----TNRLVTVEEGFPQHGVGAE 308 (367)
Q Consensus 238 g~di~Iia~G----~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~----~~~ivvvEe~~~~GGlg~~ 308 (367)
..+++|++.| +....+.+|.+.|++.|++.+.+|+.. |.+.-.++.+. +=..|++.. ...||+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g-~~iGG~~~l 80 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNG-ELVGGCDIV 80 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECC-EEEeCHHHH
Confidence 4679999998 478889999999999999999999753 33322222222 224566655 456887553
No 156
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=80.19 E-value=65 Score=31.93 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=63.0
Q ss_pred CCceeechhhHHHHHHHHHHHhccC-CeeEEecccccHH-HHHHHHHHHHHhhccccCCCCcc-ccEEEEe-CCCC-C-C
Q 017714 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQIS-VPIVFRG-PNGA-A-A 156 (367)
Q Consensus 83 p~R~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~~~~f~-~ra~dqi~~~~a~~~~~~~~~~~-~pvv~~~-~~G~-~-~ 156 (367)
|.+|+.+|- =-++.++|.|+|++- -++++++. .+.. +.....+ ..++. .+ .|++++. .++. . .
T Consensus 214 ~~~f~~~Gs-MG~a~p~AlG~ala~p~r~Vv~i~-GDGsflm~~~eL-~t~~~--------~~~~nli~VVlNNg~~~~~ 282 (361)
T TIGR03297 214 ARDFLTVGS-MGHASQIALGLALARPDQRVVCLD-GDGAALMHMGGL-ATIGT--------QGPANLIHVLFNNGAHDSV 282 (361)
T ss_pred CCceEeech-hhhHHHHHHHHHHHCCCCCEEEEE-ChHHHHHHHHHH-HHHHH--------hCCCCeEEEEEcCcccccc
Confidence 677887642 234557888888763 46677665 3322 1122222 22332 24 3555543 3332 1 1
Q ss_pred CCCCCch-h-HHHHHHhcCCCc-EEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 GVGAQHS-H-CYAAWYASVPGL-KVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 g~G~tH~-~-~~~a~~~~iP~~-~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+.-.+++ . .+..+.+++ |+ ..+...+++|+..+++++.+.++|.+|-
T Consensus 283 g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIe 332 (361)
T TIGR03297 283 GGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIE 332 (361)
T ss_pred CCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 2112222 2 233566666 54 5678899999999999999889999874
No 157
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=79.86 E-value=4.7 Score=29.68 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=42.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC-eEEEEeCCCCCCchHH
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGA 307 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~-~ivvvEe~~~~GGlg~ 307 (367)
+++|.+. +....|.+|.+.|++.|++.+.+|+..-.+ ..+.+.+...... ..|++.+ ...||+-+
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~-~~iGg~~~ 67 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNE-KLVGGLTD 67 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECC-EEEeCHHH
Confidence 4666665 445778899999999999999999875322 2334444444322 5566665 45688654
No 158
>PRK05858 hypothetical protein; Provisional
Probab=78.88 E-value=13 Score=38.72 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=63.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAAG 157 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~-G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~g 157 (367)
|.+|+..+. +=-..++.|.|++++ .-|+++++..-.-.+.....+-. +.. .++|++++.- ++ +..-
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~T-a~~--------~~lpi~ivV~NN~~y~~~ 467 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDT-LVR--------HNLPVVSVIGNNGIWGLE 467 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHH-HHH--------cCCCEEEEEEeCCchhhH
Confidence 788887753 222344566666655 34677766532222223333322 322 4788777653 32 2100
Q ss_pred -------CCC-----C-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 158 -------VGA-----Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 158 -------~G~-----t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.|. . +.-.+..+-+++ |..-....+++|+..+++.+++.++|++|-
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (542)
T PRK05858 468 KHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLVN 526 (542)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 010 0 001112344444 677889999999999999999999999995
No 159
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=78.45 E-value=6.6 Score=34.14 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=42.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
++||+-|..-....++++.|++.|+.+=.|-+ ...|.+.|...+.+-++++++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~---~~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGA---RNADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC---CcCCHHHHHHHhCCCccEEEecC
Confidence 45677776666778899999999876655544 46899999988888888998875
No 160
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=78.45 E-value=25 Score=36.71 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechh--hHHHHHHHHHHHhccCCeeEEecccccHH
Q 017714 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120 (367)
Q Consensus 43 ~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GI--aE~~~vg~AaGlA~~G~~p~~~~~~~~f~ 120 (367)
+-+.|.+.+.+++++++++ |.+... .....+..-..|.+|++.+. +=-..+..|.|++++--++++++..=.-.
T Consensus 371 ~~~~l~~~l~~~~~~ivv~-d~~~~~---~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i~GDGsf 446 (554)
T TIGR03254 371 ALEAIRDVLKDNPDIYLVN-EGANTL---DLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALEGDSAF 446 (554)
T ss_pred HHHHHHHhcCCCCCEEEEe-CCchHH---HHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEEEcCchh
Confidence 4455666665445666554 322111 01112222222778887642 12244566777777655777776532222
Q ss_pred HHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCCC-----CC-----CC--chhHHHHHHhcCCCcEEEeeCCHHH
Q 017714 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAAG-----VG-----AQ--HSHCYAAWYASVPGLKVLSPYSSED 186 (367)
Q Consensus 121 ~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~g-----~G-----~t--H~~~~~a~~~~iP~~~V~~P~d~~e 186 (367)
+.....+- .+++ .++|++++.- + |...+ .+ .. +.-.+.++-+++ |..-+.-.+++|
T Consensus 447 ~m~~~EL~-Ta~r--------~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~e 516 (554)
T TIGR03254 447 GFSGMEVE-TICR--------YNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPDE 516 (554)
T ss_pred cccHHHHH-HHHH--------cCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHHH
Confidence 22233332 3333 5788777643 3 32111 11 11 111223455555 666777799999
Q ss_pred HHHHHHHhHcCCCcEEEe
Q 017714 187 ARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 187 ~~~~~~~a~~~~~Pv~ir 204 (367)
+..+++++++.++|++|-
T Consensus 517 l~~al~~a~~~~~p~lIe 534 (554)
T TIGR03254 517 LKAALNEALASGKPTLIN 534 (554)
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 999999999989999983
No 161
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=77.22 E-value=34 Score=35.66 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=64.2
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC--CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G--~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~ 156 (367)
|.+|+..+- +=-..+..|.|++++. -+|++++..-.-.+.....+- .+.. .++|++++.- ++...
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~-Ta~~--------~~lpi~ivV~NN~~~g~ 456 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELI-TAKK--------YDLPVKIIIYNNSKLGM 456 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHH-HHHH--------HCCCeEEEEEECCccch
Confidence 677776421 1111455778877774 478887653222222333332 2332 4778777643 23220
Q ss_pred --------CC---CCC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 --------GV---GAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 --------g~---G~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+. +.. +.-.+.++-.++ |..-....+++|+...++++++.++|.+|-
T Consensus 457 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 515 (549)
T PRK06457 457 IKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVLD 515 (549)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 10 111 111223455555 777788899999999999999999999984
No 162
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=76.83 E-value=8.9 Score=31.63 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=38.7
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
++|..+- .+..+.+|.+.|+++||..+++|... .|++.+.|.+.++..+
T Consensus 3 itiy~~p-~C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNP-NCSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCC-CChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 4444433 34588999999999999999999875 7999999888877665
No 163
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=76.79 E-value=24 Score=37.40 Aligned_cols=113 Identities=20% Similarity=0.252 Sum_probs=63.8
Q ss_pred CCceeechhhHHHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCC-C
Q 017714 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAA-A 156 (367)
Q Consensus 83 p~R~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~-~ 156 (367)
|.++++...+=-..++.|.|++++. -++++++. .+ |..-.+..|.+.+ + .++|++++.- + +.. .
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i~-GDG~f~~~g~~eL~tav-~--------~~~~i~~vVlnN~~~g~~ 464 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAFI-GDSTFFHTGIPGLINAV-Y--------NKANITVVILDNRITAMT 464 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEEe-ccchhhhcCHHHHHHHH-H--------cCCCeEEEEEcCcceecc
Confidence 5566665322223344667777653 46777765 43 3322244554432 2 4778777642 2 211 1
Q ss_pred CCCCC------------chhHHHHHHhc--CCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEec
Q 017714 157 GVGAQ------------HSHCYAAWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (367)
Q Consensus 157 g~G~t------------H~~~~~a~~~~--iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~ 205 (367)
+...+ +...+..+.++ .+...|..|.+.+|+..+++++++.++|.+|..
T Consensus 465 ~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v 527 (595)
T TIGR03336 465 GHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA 527 (595)
T ss_pred CCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 10000 11123344444 566778888888999999999999999998853
No 164
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=76.54 E-value=28 Score=36.55 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCCceeechhhH--HHHHHHHHHHhccCC-eeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CC
Q 017714 82 GPERVLDTPITE--AGFTGIGVGAAYYGL-KPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AA 155 (367)
Q Consensus 82 ~p~R~i~~GIaE--~~~vg~AaGlA~~G~-~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~ 155 (367)
.|.+|+..|--= -..+..|.|++++-- |+++++..- .|++- ...+- .+.+ .++|++++.- ++ +.
T Consensus 397 ~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~-~qEL~-Ta~r--------~~lpv~ivv~nN~~~g 466 (550)
T COG0028 397 RPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMN-GQELE-TAVR--------YGLPVKIVVLNNGGYG 466 (550)
T ss_pred CCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhcc-HHHHH-HHHH--------hCCCEEEEEEECCccc
Confidence 377888863211 123345556666543 778877532 24333 23332 2332 4678777643 22 11
Q ss_pred --C------CCCC-Cc---hhH-HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 156 --A------GVGA-QH---SHC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 156 --~------g~G~-tH---~~~-~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
. +.+. ++ ... +..+-.++ |+.-+.-.+++|+...++.|+..++|++|-
T Consensus 467 ~v~~~q~~~~~~~~~~~~~~~~~f~klAea~-G~~g~~v~~~~el~~al~~al~~~~p~lid 527 (550)
T COG0028 467 MVRQWQELFYGGRYSGTDLGNPDFVKLAEAY-GAKGIRVETPEELEEALEEALASDGPVLID 527 (550)
T ss_pred cchHHHHHhcCCCcceeecCCccHHHHHHHc-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0010 11 011 33333444 677888889999999999999999998884
No 165
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=76.30 E-value=6.5 Score=31.09 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=46.1
Q ss_pred eCCcEEEEEec----hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHh-cCCeEEEEeCCCCCCchHHHH
Q 017714 237 EGKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGFPQHGVGAEI 309 (367)
Q Consensus 237 ~g~di~Iia~G----~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~ivvvEe~~~~GGlg~~v 309 (367)
...+++|++.| +....|.+|.+.|.+.|++...+|+..- |--.+.+.+... ++=..|++... ..||..+..
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~-~iGG~ddl~ 85 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGE-FVGGCDIIM 85 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCE-EEeChHHHH
Confidence 34689999988 5788899999999999999999998531 111122222211 12245666654 468876543
No 166
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=76.24 E-value=27 Score=36.50 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=65.5
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..+- +=-..++.|.|++++- -++++++..= .|.+-+ ..+ ..+.. .++|++++.- + +...
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL-~Ta~~--------~~l~i~~vV~NN~~y~~ 473 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNS-QEL-ATAVQ--------NDIPVIVAILNNGYLGM 473 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccH-HHH-HHHHH--------cCCCeEEEEEECCccHH
Confidence 778997532 3334677888888874 3667766532 233322 222 22332 4777766642 2 2210
Q ss_pred ---------C---CCCC--chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g---~G~t--H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+.. +.-.+..+-+.+ |..-+.-.+..|+..++++++..++|.+|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~lie 534 (561)
T PRK06048 474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVID 534 (561)
T ss_pred HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0010 111223455555 677788999999999999999999999984
No 167
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=76.11 E-value=15 Score=27.71 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=38.4
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHH-HhcCCeEEEEeCCC
Q 017714 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEGF 300 (367)
Q Consensus 240 di~Iia~G~-~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~-~~~~~~ivvvEe~~ 300 (367)
++.|++.+. ....|++.++.|++.|+++.+ |.+. +.+... +..+ -.+...++++.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~-~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKK-IREAQLQKIPYILVVGDKE 62 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHH-HHHHHHcCCCEEEEECcch
Confidence 566777764 557899999999999999987 4443 455444 3222 23445778777654
No 168
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=75.85 E-value=8 Score=31.62 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=38.9
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
|++|.+. ..+..+.+|.+.|+++|++++++|+.. .|++.+.|.+.+++.+
T Consensus 1 ~i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~g 50 (113)
T cd03033 1 DIIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDLP 50 (113)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHcC
Confidence 3444443 345678889999999999999999986 7999999888777543
No 169
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=74.53 E-value=13 Score=37.14 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=59.9
Q ss_pred EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC---CeEEEEeCCCCCCch--HH
Q 017714 233 KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT---NRLVTVEEGFPQHGV--GA 307 (367)
Q Consensus 233 ~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~---~~ivvvEe~~~~GGl--g~ 307 (367)
.++.+|.+++++..|.--+.--+- ++..|.++.+++..+=+|+|.+.|.+.+++. +.|.++...+..|=+ -.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~i---a~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEI---AERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHH---HHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 355678899999999988876554 4455999999999999999999999999854 456666766655533 24
Q ss_pred HHHHHHHHh
Q 017714 308 EICASVIEE 316 (367)
Q Consensus 308 ~v~~~l~~~ 316 (367)
+|+..+.+.
T Consensus 152 ~I~~~~k~~ 160 (383)
T COG0075 152 EIAKAAKEH 160 (383)
T ss_pred HHHHHHHHc
Confidence 556555443
No 170
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.69 E-value=38 Score=35.75 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=66.3
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC-
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA- 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~- 156 (367)
|.+|++.+- +=-..+..|.|++++- -++++++..=.-.+.....| ..+.. .++|++++.- ++ ...
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL-~Ta~r--------~~lpviivV~NN~~~~~i 497 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQEL-STCLQ--------YDTPVKIISLNNRYLGMV 497 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHH-HHHHH--------cCCCeEEEEEECCcchHH
Confidence 789997643 4455677788888884 36666665322222222222 22332 5788777653 33 210
Q ss_pred -------CCCCC------chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-CCcEEEe
Q 017714 157 -------GVGAQ------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (367)
Q Consensus 157 -------g~G~t------H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 204 (367)
..+.. +...+..+-+++ |+.-+.-.+.+|+..+++.|++. ++|++|-
T Consensus 498 ~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 558 (587)
T PRK06965 498 RQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFLD 558 (587)
T ss_pred HHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 00110 101122455555 77788889999999999999984 7899984
No 171
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=73.66 E-value=14 Score=44.03 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=67.9
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeeEE--ecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC--CCC
Q 017714 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (367)
Q Consensus 84 ~R~i~~GIaE~~~vg~AaGlA~~G~~p~~--~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (367)
=|++.+ ..|+++.-+|.|.|+.-.+|-+ +|..+..+ -++--+.+ +. .-.+||+++..+.+.. +.|
T Consensus 340 i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGPG~t-N~l~av~e-A~--------~d~vPlLvItgd~p~~~~~~g 408 (1655)
T PLN02980 340 TTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGTAVS-NLLPAVVE-AS--------QDFVPLLLLTADRPPELQDAG 408 (1655)
T ss_pred CeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcHHHH-HHHHHHHH-Hh--------hcCCCEEEEeCCCCHHHhcCC
Confidence 377766 8999999999999998666544 45444443 34444433 22 2689999997654332 333
Q ss_pred CCchhHH-HHHHhcCCCcEEEe--eCCH-------HHHHHHHHHhHcC-CCcEEEecc
Q 017714 160 AQHSHCY-AAWYASVPGLKVLS--PYSS-------EDARGLLKAAIRD-PDPVVFLEN 206 (367)
Q Consensus 160 ~tH~~~~-~a~~~~iP~~~V~~--P~d~-------~e~~~~~~~a~~~-~~Pv~ir~~ 206 (367)
..+ .-| .++++.+--+..-. |.+. ..+..+++.|... ++||+|-.|
T Consensus 409 a~Q-~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 409 ANQ-AINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred CCc-ccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 322 223 37888776554443 4441 3445555555554 689999766
No 172
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=73.61 E-value=8.9 Score=32.05 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=37.4
Q ss_pred Eec-hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC
Q 017714 245 AFS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (367)
Q Consensus 245 a~G-~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (367)
-|| ..+..+++|.+.|+++|+.++++|... .|++.+.|.+.+++.
T Consensus 5 iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 5 FYEKPGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGNK 50 (126)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHHc
Confidence 344 456788999999999999999999986 799999888777654
No 173
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=73.51 E-value=21 Score=37.70 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccC------CeeEEecccccHH-H--HHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCCCCCCCc--
Q 017714 95 GFTGIGVGAAYYG------LKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQH-- 162 (367)
Q Consensus 95 ~~vg~AaGlA~~G------~~p~~~~~~~~f~-~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH-- 162 (367)
+.+++|.|+|++- .+++++.. .+.. + ..++-+.. ++. .+.|++++..+ +.. -.+++.
T Consensus 121 ~gl~~AvG~A~a~~~~~~~~~~v~~i~-GDG~l~eG~~~Eal~~-A~~--------~~~nli~IvdnN~~~-i~~~~~~~ 189 (580)
T PRK05444 121 TSISAALGMAKARDLKGGEDRKVVAVI-GDGALTGGMAFEALNN-AGD--------LKSDLIVILNDNEMS-ISPNVGAL 189 (580)
T ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEEE-cccccccCHHHHHHHH-HHh--------hCCCEEEEEECCCCc-CCCcchhh
Confidence 3556677776642 35566665 4432 2 55566533 333 45788777654 332 123221
Q ss_pred ----hhHH-HHHHhcCCCcEEEee---CCHHHHHHHHHHhHcCCCcEEEec
Q 017714 163 ----SHCY-AAWYASVPGLKVLSP---YSSEDARGLLKAAIRDPDPVVFLE 205 (367)
Q Consensus 163 ----~~~~-~a~~~~iP~~~V~~P---~d~~e~~~~~~~a~~~~~Pv~ir~ 205 (367)
...+ ...+++. ||.++.+ .|.+++..+++.+.+.++|++|-.
T Consensus 190 ~~~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~ 239 (580)
T PRK05444 190 SNYLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHV 239 (580)
T ss_pred hhhhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 1455665 6766644 789999999998888889998853
No 174
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=73.30 E-value=31 Score=35.99 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=65.2
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEeccc-ccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~-~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|++.|- +--..++.|.|++++. -++++++.. ..|.+.+ ..+ ..+.+ .++|++++.- +| ...
T Consensus 402 p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~-~eL-~ta~~--------~~l~~~~vv~NN~~~~~ 471 (558)
T TIGR00118 402 PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNL-QEL-STAVQ--------YDIPVKILILNNRYLGM 471 (558)
T ss_pred CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccH-HHH-HHHHH--------hCCCeEEEEEeCCchHH
Confidence 788998642 2334667888877773 355555442 1243322 222 22333 5778777643 33 210
Q ss_pred ---------C-C--CCC-chhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------G-V--GAQ-HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g-~--G~t-H~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ . +.. +...+ ..+..++ |+.-+.-.+++|+..++.++++.++|.+|-
T Consensus 472 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 532 (558)
T TIGR00118 472 VRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIEKPEELDEKLKEALSSNEPVLLD 532 (558)
T ss_pred HHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 111 11122 3455555 677788899999999999999999999983
No 175
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=73.09 E-value=42 Score=34.93 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=65.1
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~ 156 (367)
|.+|+..+- +=-..++.|.|++++. -++++++..= .|++-+ ..+- .+.. .++|++++.- ++...
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~-~eL~-ta~~--------~~l~v~ivV~NN~~~~~ 460 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNV-QELG-TIKR--------KQLPVKIVLLDNQRLGM 460 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccH-HHHH-HHHH--------hCCCeEEEEEeCCccHH
Confidence 788887532 1122466778888774 5677776532 233322 2232 2332 5777777642 22210
Q ss_pred ---------C---CCCC--chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g---~G~t--H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+.. +.-.+..+.+++ |..-+...+++|+..+++++++.++|.+|-
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 521 (548)
T PRK08978 461 VRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLLH 521 (548)
T ss_pred HHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 111123455555 777888899999999999999999999984
No 176
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=72.74 E-value=32 Score=35.76 Aligned_cols=111 Identities=19% Similarity=0.128 Sum_probs=64.4
Q ss_pred CCceeech-hh-HHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTP-IT-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~G-Ia-E~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..+ .. =-..+..|.|++++. -++++++..- .|.+. ...|- .+.. .++|++++.- + ++..
T Consensus 398 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~-~~eL~-Ta~~--------~~lpi~ivV~NN~~y~~ 467 (539)
T TIGR02418 398 ARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFS-SMELE-TAVR--------LKLNIVHIIWNDNGYNM 467 (539)
T ss_pred CCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhch-HHHHH-HHHH--------hCCCeEEEEEECCcchH
Confidence 78887542 21 123455777777663 4666666532 23333 33332 2333 4788777643 2 3221
Q ss_pred C-------CC----CC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 G-------VG----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 g-------~G----~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
- .+ .. +.-.+..+-+++ |+.-....+++|+..+++++++.++|.+|-
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 526 (539)
T TIGR02418 468 VEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESPDQLEPTLRQAMEVEGPVVVD 526 (539)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01 00 111223455555 777889999999999999999999999984
No 177
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=72.51 E-value=19 Score=26.93 Aligned_cols=73 Identities=21% Similarity=0.150 Sum_probs=44.6
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc-CCeEEEEeCCCCCCchHHHHHHHH
Q 017714 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 236 ~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
++..+++|++ -+....|.+|.+.|++.|++.+.+|+.. .-+.+.+.+.... +=.+|+++. ...||+ ++|.++|
T Consensus 5 ~~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~--~~~~~~~~~~~g~~~vP~i~i~g-~~igG~-~~l~~~l 78 (79)
T TIGR02190 5 RKPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGN--DARGRSLRAVTGATTVPQVFIGG-KLIGGS-DELEAYL 78 (79)
T ss_pred CCCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCC--ChHHHHHHHHHCCCCcCeEEECC-EEEcCH-HHHHHHh
Confidence 3445676665 5777889999999999999999998753 1122233322221 224455554 556886 4455443
No 178
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=72.02 E-value=23 Score=34.19 Aligned_cols=98 Identities=17% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHHHHHHhccC-CeeEEecccccH--HHHHHHHHHHHHhhccccCCCCccccEEEEeC-C---CCCCCC-------CC-
Q 017714 96 FTGIGVGAAYYG-LKPVVEFMTFNF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAGV-------GA- 160 (367)
Q Consensus 96 ~vg~AaGlA~~G-~~p~~~~~~~~f--~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g~-------G~- 160 (367)
++.+|.|++++. -++++++. .+. ..-....+.+ +++ .++|++++.- + |...+. |.
T Consensus 75 alpaAiGaklA~pd~~VV~i~-GDG~~~~mg~~eL~t-A~r--------~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~ 144 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVG-GDGDLASIGGGHFIH-AGR--------RNIDITVIVENNGIYGLTKGQASPTTPEGSK 144 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEe-CccHHHhccHHHHHH-HHH--------HCCCcEEEEEeCchhhcccCcccCCcCCCcc
Confidence 456778877763 46677664 333 2233445544 333 5788777643 2 211111 10
Q ss_pred --------C-chhHHHHHHhcCCCcEEE---eeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 161 --------Q-HSHCYAAWYASVPGLKVL---SPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 161 --------t-H~~~~~a~~~~iP~~~V~---~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
. +.-.+..+..+. |..-+ ...++.|+..++++|++.++|++|-
T Consensus 145 ~~~~~~g~~~~~~d~~~lA~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIe 199 (301)
T PRK05778 145 TKTAPYGNIEPPIDPCALALAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFID 199 (301)
T ss_pred cccccCCCcCCCCCHHHHHHHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 001122344444 44443 6899999999999999999999984
No 179
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=71.27 E-value=12 Score=32.87 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=38.8
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEe
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvE 297 (367)
+|++++||+.|.++... +++.|.++|.++.+++-.+ +.+.+.+++.+-||+.-
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEEcC
Confidence 46789999999887653 4556888899888887542 55667888888666543
No 180
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=70.90 E-value=31 Score=36.11 Aligned_cols=111 Identities=16% Similarity=0.075 Sum_probs=65.3
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..+- +=-..++.|.|++++. -++++++..- .|++-+ ..+ ..+.. .++|++++.- ++ ...
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~-~eL-~Ta~~--------~~lpvi~vV~NN~~~~~ 473 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNI-QEL-MTAVE--------YKIPVINIILNNNFLGM 473 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccH-HHH-HHHHH--------hCCCeEEEEEECCcchh
Confidence 788886532 2223667888888775 4566665432 233333 223 22332 5788876642 22 211
Q ss_pred ---------C---CCCCch-hHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------G---VGAQHS-HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g---~G~tH~-~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+..+. ..+ ..+-+++ |..-+.-.+++|+..++++++..++|.+|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 534 (563)
T PRK08527 474 VRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALID 534 (563)
T ss_pred HHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 011111 112 3455555 677788899999999999999989999984
No 181
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=70.75 E-value=5.8 Score=31.98 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 249 ~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
.+..+.+|.+.|+++|++++.+|+.. .|++.+.|.+.++..+
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKLG 46 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHhc
Confidence 45788899999999999999999985 6999998877766544
No 182
>PRK10853 putative reductase; Provisional
Probab=70.59 E-value=10 Score=31.25 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
..+..+++|.+-|+++|+.++++|... .|++.+.|.+.+++.+
T Consensus 8 ~~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 8 KNCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDELG 50 (118)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHcC
Confidence 345678889999999999999999986 8999999988776543
No 183
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=70.05 E-value=35 Score=35.92 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|++.+- +=-..++.|.|++++. -++++++..- .|++.. ..+ ..+.+ .++|++++.- + +...
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~-~eL-~Ta~~--------~~lpv~~vV~NN~~~g~ 478 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNS-QEL-ATIAE--------YDIPVVICIFDNRTLGM 478 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccH-HHH-HHHHH--------hCCCeEEEEEeCCchHH
Confidence 788997542 3334667888888773 3566655422 233222 222 22333 5778777643 2 2210
Q ss_pred ---------C---CCCCch-hH-HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------G---VGAQHS-HC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g---~G~tH~-~~-~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+..+. .. +.++..++ |..-+.-.+++|+..+++++++.++|.+|-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (586)
T PRK06276 479 VYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLLD 539 (586)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 011111 11 23555555 677788899999999999999989999884
No 184
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=70.00 E-value=51 Score=34.54 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=64.8
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|++.|- . --..++.|.|++++. -++++++..= .|.+ ....+-. ++. .++|++++.- ++ ...
T Consensus 411 p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~-~~~eL~t-a~~--------~~lpv~~vV~NN~~~~~ 480 (574)
T PRK06882 411 PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQM-NIQELST-AKQ--------YDIPVVIVSLNNRFLGM 480 (574)
T ss_pred CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhc-cHHHHHH-HHH--------hCCCeEEEEEECchhHH
Confidence 789998642 2 333577888888774 3455555432 2333 3333332 333 5788877653 32 210
Q ss_pred --------CCCC---C---chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-CCcEEEe
Q 017714 157 --------GVGA---Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (367)
Q Consensus 157 --------g~G~---t---H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 204 (367)
..+. . +...+..+-+++ |+.-+...+.+|+..++.++++. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 542 (574)
T PRK06882 481 VKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQIDTPDELEEKLTQAFSIKDKLVFVD 542 (574)
T ss_pred HHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0011 1 111123455555 66777889999999999999986 7898884
No 185
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=69.98 E-value=26 Score=36.27 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCC---CC
Q 017714 83 PERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA---GV 158 (367)
Q Consensus 83 p~R~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~---g~ 158 (367)
-=|++.+ -.|-|+.-+|=|.|+. |.-.++.|| ...-+-|++-|--+-| -++||+.++- .++. +-
T Consensus 42 ~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTf-GVGELSA~NGIAGSYA---------E~vpVvhIvG-~P~~~~q~~ 109 (557)
T COG3961 42 GLRWVGN-ANELNAAYAADGYARLNGISALVTTF-GVGELSALNGIAGSYA---------EHVPVVHIVG-VPTTSAQAS 109 (557)
T ss_pred Cceeecc-cchhhhhhhhcchhhhcCceEEEEec-ccchhhhhcccchhhh---------hcCCEEEEEc-CCCcchhhc
Confidence 3466666 5899999999999996 888888887 5555667777653333 6899999852 2222 11
Q ss_pred C--CCchh---HHHHHHhcCCCc----EEEeeCC--HHHHHHHHHHhHcCCCcEEEecccc
Q 017714 159 G--AQHSH---CYAAWYASVPGL----KVLSPYS--SEDARGLLKAAIRDPDPVVFLENEL 208 (367)
Q Consensus 159 G--~tH~~---~~~a~~~~iP~~----~V~~P~d--~~e~~~~~~~a~~~~~Pv~ir~~~~ 208 (367)
| -||.. .++-+++.-.++ ..+.+.+ +.|...+++.++..+.|+||..|..
T Consensus 110 ~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~RPvYI~lP~d 170 (557)
T COG3961 110 GLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRPVYIGLPAD 170 (557)
T ss_pred cchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcCCeEEEcchH
Confidence 2 23421 223233322222 2233443 7899999999999999999987643
No 186
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=69.83 E-value=47 Score=34.47 Aligned_cols=112 Identities=20% Similarity=0.185 Sum_probs=63.4
Q ss_pred CCceeechh-hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC--
Q 017714 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA-- 156 (367)
Q Consensus 83 p~R~i~~GI-aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~-- 156 (367)
|.+|+..+. +=-..++.|.|++++. -++++++..-.-.+.....+. .++. .++|++++.- ++ ...
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~-ta~~--------~~lp~~~vv~NN~~~~~~~ 468 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALW-SAAQ--------LKLPVTFVILNNGRYGALR 468 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHH-HHHH--------hCCCcEEEEEeChHHHHHH
Confidence 678886311 1114556888887763 345555543222222333332 2332 5788776643 33 211
Q ss_pred ------CCCC-C----chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ------GVGA-Q----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ------g~G~-t----H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+.+. . +...+..+.+.+ |+..+...+..|+..+++.+.+.++|++|-
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 526 (530)
T PRK07092 469 WFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLVE 526 (530)
T ss_pred HHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1011 0 111223455555 777888889999999999999989999884
No 187
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=69.82 E-value=11 Score=30.20 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
..+..+.+|.+.|+++|+.++++|+.. .|++.+.|.+.+++.+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 455678889999999999999999986 7999999988887654
No 188
>PRK05899 transketolase; Reviewed
Probab=69.65 E-value=28 Score=37.11 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHhcCCCcEEEeeC--CHHHHHHHHHHhHcCCCcEEEec
Q 017714 167 AAWYASVPGLKVLSPY--SSEDARGLLKAAIRDPDPVVFLE 205 (367)
Q Consensus 167 ~a~~~~iP~~~V~~P~--d~~e~~~~~~~a~~~~~Pv~ir~ 205 (367)
...++++ ||.++.-. |..++..+++.+.+.++|++|..
T Consensus 206 ~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v 245 (624)
T PRK05899 206 KKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIA 245 (624)
T ss_pred HHHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 3677777 88888877 89999999999988889998854
No 189
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=69.60 E-value=51 Score=34.55 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHH-HhCCCceeechh--hHHHHHHHHHHHhccCCeeEEecccccH
Q 017714 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMTFNF 119 (367)
Q Consensus 43 ~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~-~~~p~R~i~~GI--aE~~~vg~AaGlA~~G~~p~~~~~~~~f 119 (367)
+.+.|.+.+...++.+++. |.+.. ......+.. .. |.++++.+- +=-..+..|.|++++--++++++..-.-
T Consensus 378 ~~~~l~~~l~~~~d~iv~~-~~~~~---~~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i~GDG~ 452 (569)
T PRK09259 378 ALGAIRDVLKENPDIYLVN-EGANT---LDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAIEGDSA 452 (569)
T ss_pred HHHHHHHHhCCCCCEEEEe-CchHH---HHHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEEecCcc
Confidence 4456666665444666554 32211 001111222 33 788887542 1112556777777775567776653222
Q ss_pred HHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC-------C-CC---CCc--hhHHHHHHhcCCCcEEEeeCCH
Q 017714 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA-------G-VG---AQH--SHCYAAWYASVPGLKVLSPYSS 184 (367)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~-------g-~G---~tH--~~~~~a~~~~iP~~~V~~P~d~ 184 (367)
.+.....+- .+.. .++|++++.- + |... + .. ... ...+.++-+++ |..-+.-.++
T Consensus 453 f~m~~~EL~-Ta~r--------~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~ 522 (569)
T PRK09259 453 FGFSGMEVE-TICR--------YNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTTP 522 (569)
T ss_pred ccccHHHHH-HHHH--------cCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECCH
Confidence 222223332 2333 5888777653 3 3210 0 00 111 11123455555 6667788999
Q ss_pred HHHHHHHHHhHcCCCcEEEe
Q 017714 185 EDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 185 ~e~~~~~~~a~~~~~Pv~ir 204 (367)
.|+..+++++++.++|++|-
T Consensus 523 ~el~~al~~a~~~~~p~lIe 542 (569)
T PRK09259 523 DELRHALTEAIASGKPTLIN 542 (569)
T ss_pred HHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999984
No 190
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=69.41 E-value=66 Score=33.75 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=63.9
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC-
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA- 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~- 156 (367)
|.+|++.|- +=-..+..|.|++++- -+|++++..=.-.+.....+-. +.. .++|++++.- + +...
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~T-a~r--------~~lpv~ivV~NN~~y~~i 483 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELST-CLQ--------YGLPVKIINLNNGALGMV 483 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHH-HHH--------hCCCeEEEEEeCCccHHH
Confidence 788887632 1123455688887763 4677766532222222233322 332 5788777653 2 3210
Q ss_pred ---------C--CCCC--chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-CCcEEEe
Q 017714 157 ---------G--VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (367)
Q Consensus 157 ---------g--~G~t--H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 204 (367)
+ .+.. +.-.+.++-.++ |..-+...+..|+..+++++++. ++|.+|-
T Consensus 484 ~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lIe 544 (574)
T PRK06466 484 RQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFID 544 (574)
T ss_pred HHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 0010 101122455555 67778889999999999999986 8999984
No 191
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=68.88 E-value=57 Score=34.46 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=30.8
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
++-+++ |+.-+.-.+.+|+..+++++++.++|++|-
T Consensus 507 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 542 (597)
T PRK08273 507 RFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVLE 542 (597)
T ss_pred HHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 555565 788888999999999999999999999984
No 192
>PRK10026 arsenate reductase; Provisional
Probab=68.53 E-value=15 Score=31.37 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
..+..+.+|.+.|+++|+.++++|... .|++.+.|.+.+++.+
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 456788899999999999999999987 7999999988887654
No 193
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=68.45 E-value=24 Score=28.79 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=39.5
Q ss_pred CCcEEEEEec--h-hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHH-HhcCCeEEEEeCCC
Q 017714 238 GKDVTITAFS--K-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEGF 300 (367)
Q Consensus 238 g~di~Iia~G--~-~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~-~~~~~~ivvvEe~~ 300 (367)
..++.|++.+ . ....+++.++.|+++|+++.+- .. +.+... +..+ -.+.+.++++.+..
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d-~~--~sl~kq-lk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD-DS--GSIGRR-YARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEe-CC--CCHHHH-HHHhHhcCCCEEEEECcCc
Confidence 4567888888 4 4568888899999999999883 33 555444 3322 22455677777654
No 194
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=68.05 E-value=27 Score=25.36 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=42.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc-CCeEEEEeCCCCCCchHHHHHHHH
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
+++|++ -+....|.+|.+.|.+.|++.+.+|+..- + +.+.+.+.... +=..|+++.. ..||. .+|.+++
T Consensus 2 ~v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi~g~-~igg~-~~l~~~l 71 (72)
T cd03029 2 SVSLFT-KPGCPFCARAKAALQENGISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFIDGE-LIGGS-DDLEKYF 71 (72)
T ss_pred eEEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEECCE-EEeCH-HHHHHHh
Confidence 355555 46778888899999999999999988642 2 33334332222 2245666654 45775 3444443
No 195
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=67.88 E-value=21 Score=36.84 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=81.6
Q ss_pred HHHHHHHHHhh-C-CcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecccccH
Q 017714 43 LNSALDEEMSA-D-PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNF 119 (367)
Q Consensus 43 ~~~~L~~l~~~-d-~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~~~~f 119 (367)
+++-|-+.+.+ + ..++.+-.|-. ..+. ++.++.+-=|++.+ -.|-|+.-.|=|.|+. |.-.++.|| ...
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGDFN-----L~LL-D~l~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~VtTf-gVG 77 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGDFN-----LSLL-DKLYAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVTTF-GVG 77 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCccc-----HHHH-HHhhhcCCceeecc-cchhhhhhhhcchhhhcCceEEEEEe-ccc
Confidence 44444443333 3 44555544432 1232 34445523355544 4899999999999997 877888887 555
Q ss_pred HHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCC-CCC----Cch---hHHHHHHhcCCCc--EEEeeCCHHHHH-
Q 017714 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VGA----QHS---HCYAAWYASVPGL--KVLSPYSSEDAR- 188 (367)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~G~----tH~---~~~~a~~~~iP~~--~V~~P~d~~e~~- 188 (367)
-+-|++-|-- +|. -++||+.++- .++.- .+. ||. ..+.-++|...++ ...+-.|.+++.
T Consensus 78 eLSAlNGIAG--sYA-------E~vpVihIVG-~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~ 147 (561)
T KOG1184|consen 78 ELSALNGIAG--AYA-------ENVPVIHIVG-VPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPE 147 (561)
T ss_pred hhhhhcccch--hhh-------hcCCEEEEEC-CCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHH
Confidence 5677777643 332 6999999852 33332 222 231 1122233332221 222334444444
Q ss_pred ---HHHHHhHcCCCcEEEecccc
Q 017714 189 ---GLLKAAIRDPDPVVFLENEL 208 (367)
Q Consensus 189 ---~~~~~a~~~~~Pv~ir~~~~ 208 (367)
.+++.+++...||||-.|..
T Consensus 148 ~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 148 QIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred HHHHHHHHHHHhcCCeEEEeecc
Confidence 45556666799999987643
No 196
>PRK06154 hypothetical protein; Provisional
Probab=67.74 E-value=77 Score=33.25 Aligned_cols=112 Identities=18% Similarity=0.004 Sum_probs=64.9
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC-
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA- 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~- 156 (367)
|.+|+..+- +=-..+..|.|++++- -++++++..=.-.+.....+- .+.. .++|+++++- ++ +..
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~-Ta~r--------~~lpi~~vV~NN~~yg~~ 491 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFE-TAVR--------ERIPILTILLNNFSMGGY 491 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHH-HHHH--------hCCCeEEEEEECCcccee
Confidence 789987532 1223566777777763 477777653222233333332 2333 5888877753 32 210
Q ss_pred --C---CC-----CCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc---CCCcEEEe
Q 017714 157 --G---VG-----AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (367)
Q Consensus 157 --g---~G-----~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~---~~~Pv~ir 204 (367)
. .+ ..+...+.++-.++ |+.-+.-.+++|+..+++.|++ .++|.+|-
T Consensus 492 ~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIe 551 (565)
T PRK06154 492 DKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLE 551 (565)
T ss_pred ehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEE
Confidence 0 00 11111122455555 7778888999999999999986 57899884
No 197
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=67.30 E-value=46 Score=35.20 Aligned_cols=109 Identities=14% Similarity=0.066 Sum_probs=61.4
Q ss_pred eeechhhHHHHHHHHHHHhcc----CC-eeEEecccccH--HH-HHHHHHHHHHhhccccCCCCccccEEEEeCC-CCCC
Q 017714 86 VLDTPITEAGFTGIGVGAAYY----GL-KPVVEFMTFNF--SM-QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAA 156 (367)
Q Consensus 86 ~i~~GIaE~~~vg~AaGlA~~----G~-~p~~~~~~~~f--~~-ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~ 156 (367)
++..|+.= +.+++|.|+|.+ |. ..+++.+ .+. .. .++|-+.+ ++. .+.|++++..+ +.+.
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~i-GDG~~~eG~~~EAln~-A~~--------~k~~li~Ii~dN~~si 177 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVI-GDGSLSGGLALEGLNN-AAE--------LKSNLIIIVNDNQMSI 177 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEE-CchhhhcchHHHHHHH-HHh--------hCCCEEEEEECCCCcC
Confidence 35666643 577788888776 32 2344443 332 22 56777643 554 46899998753 4321
Q ss_pred C--CC-CCchhH---------HHHHHhcC--CCcEEEeeCCHHHHHHHHHHhHcCCCcEEEec
Q 017714 157 G--VG-AQHSHC---------YAAWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (367)
Q Consensus 157 g--~G-~tH~~~---------~~a~~~~i--P~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~ 205 (367)
. .+ .++... ....+.++ +.+.++...|..++..+++.+-+.++|++|-.
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~ 240 (581)
T PRK12315 178 AENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHI 240 (581)
T ss_pred CCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 11 111111 12456664 33444455677778888888776789999853
No 198
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=67.20 E-value=45 Score=35.10 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=61.8
Q ss_pred CCceeechhhHHHHH----HHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CC
Q 017714 83 PERVLDTPITEAGFT----GIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GA 154 (367)
Q Consensus 83 p~R~i~~GIaE~~~v----g~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~ 154 (367)
|.+|+..+- .+.+ ..|.|++++- -++++++..- .|.+ ....+ ..+++ .++|++++.- + +.
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~-~~~el-~Ta~~--------~~lpv~~vV~NN~~~ 465 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISMSGDGGLSM-LLGEL-LTVKL--------YDLPVKVVVFNNSTL 465 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEEEcCchHhh-hHHHH-HHHHH--------hCCCeEEEEEECCcc
Confidence 567775432 2333 4777777763 3556655432 2333 33333 33443 5788777653 2 22
Q ss_pred CC------CCC-CCc----hhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 155 AA------GVG-AQH----SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 155 ~~------g~G-~tH----~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
.. ..| ..+ ...+ ..+-.++ |..-....+++|+..+++++++.++|++|-
T Consensus 466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 526 (578)
T PRK06546 466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALVD 526 (578)
T ss_pred ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 21 011 111 1112 2455555 566667789999999999999999999984
No 199
>PLN02470 acetolactate synthase
Probab=66.96 E-value=68 Score=33.79 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=64.0
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC-
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA- 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~- 156 (367)
|.+|+..+- +=-..++.|.|++++. -++++++..-.-.+.....| ..+.. .++|++++.- + +...
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL-~Ta~~--------~~l~v~ivV~NN~~yg~i 486 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQEL-ATIHV--------ENLPVKIMVLNNQHLGMV 486 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHH-HHHHH--------hCCCeEEEEEeCCcchHH
Confidence 788886421 1223667778877774 35666665322222222222 22332 5777766642 3 3210
Q ss_pred --------C-------CCC-----CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 --------G-------VGA-----QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 --------g-------~G~-----tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+. .+...+.++-+++ |..-..-.++.|+..+++++++.++|.+|-
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 553 (585)
T PLN02470 487 VQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLLD 553 (585)
T ss_pred HHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 000 0001223555555 677788899999999999999989999884
No 200
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=66.73 E-value=63 Score=33.85 Aligned_cols=111 Identities=21% Similarity=0.154 Sum_probs=63.4
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..+- +=-..+..|.|++++. -++++++..= .|++- ...| ..+.. .++|++++.- + +...
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~-~~eL-~Ta~~--------~~l~i~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMT-GTNL-ATAVD--------EHIPVISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcc-hHHH-HHHHH--------hCCCeEEEEEECCchHH
Confidence 788887432 1112456777777774 4566665432 23333 2333 22332 4788777643 2 2210
Q ss_pred ---C----CCC----Cc--hhH-HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---G----VGA----QH--SHC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---g----~G~----tH--~~~-~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
. .+. +. ... +.++-+++ |..-+...++.|+..++.++++.++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 541 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVIR 541 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 010 00 012 23455555 677788899999999999999999999884
No 201
>PRK08322 acetolactate synthase; Reviewed
Probab=66.45 E-value=60 Score=33.71 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=62.6
Q ss_pred CCceeec-hhh-HHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCC
Q 017714 83 PERVLDT-PIT-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA 156 (367)
Q Consensus 83 p~R~i~~-GIa-E~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~ 156 (367)
|.+|+.. |.. =-..++.|.|++++. -++++++..- .|++- ...+-. +.. .++|++++.- ++...
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~-~~eL~T-a~~--------~~lpv~iiV~NN~~~g~ 465 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMN-SQELET-AVR--------LGLPLVVLILNDNAYGM 465 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhcc-HHHHHH-HHH--------hCCCeEEEEEeCCCcch
Confidence 6787743 221 123556788887774 4666665432 23322 222222 222 4778777642 23210
Q ss_pred ---------C--CCCC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------G--VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g--~G~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+.. |.-.+.++-+++ |+.-+...+++|+..+++++++.++|.+|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (547)
T PRK08322 466 IRWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVID 524 (547)
T ss_pred HHHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 111223444555 677888899999999999999999999884
No 202
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=66.12 E-value=64 Score=33.82 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=64.1
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCC-
Q 017714 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA- 156 (367)
Q Consensus 83 p~R~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~- 156 (367)
|.||+..+- . =-..++.|.|++++. -++++++..=.-.+.....+-. +.. .++|++++.- ++...
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~T-a~~--------~~lpv~ivV~NN~~~g~i 468 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLS-LVQ--------LKLPVKIVVFNNSVLGFV 468 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHH-HHH--------hCCCeEEEEEeCCccccH
Confidence 688886421 1 123577888888764 4677766532222233333332 332 4778766642 22211
Q ss_pred -------C---CCCC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 -------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 -------g---~G~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+.. +.-.+..+-.++ |+.-+...++.|+..+++++++.++|.+|-
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (574)
T PRK09124 469 AMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALVD 526 (574)
T ss_pred HHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0110 111122444444 777788899999999999999999999984
No 203
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=65.97 E-value=54 Score=34.41 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=62.7
Q ss_pred ceeec-hh-hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CCC-CC--
Q 017714 85 RVLDT-PI-TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AA-- 156 (367)
Q Consensus 85 R~i~~-GI-aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~-~~-- 156 (367)
+|+.. |. +=-..++.|.|++++. .++++++..- .|.+ ....+. .+.+ .++|++++.- ++. ..
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~-~~~el~-ta~~--------~~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAH-VWAELE-TARR--------MGVPVTIVVLNNGILGFQK 498 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHh-HHHHHH-HHHH--------hCCCeEEEEEeCCccCCEE
Confidence 57653 21 2235677888888774 4666666532 2332 233332 2333 5788777643 331 10
Q ss_pred -C----CCCCc------hhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 -G----VGAQH------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 -g----~G~tH------~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
. .+..+ ...+..+..++ |+.-+.-.++.|+..+++++++.++|.+|-
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 556 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLIE 556 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01111 11122455555 666777889999999999999999999984
No 204
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=65.82 E-value=14 Score=31.01 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=44.6
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeec-CCC-------------CHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHH
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSI-RPL-------------DRSTINASVRKTNRLVTVEEGFPQHGVGAEICAS 312 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i-~P~-------------d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~ 312 (367)
|.+...+..+++.|++.|++++++|++-. .|+ |.+.+.+.++..+.+|++=.-+ .|++...+..+
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y-~~~~s~~lK~~ 92 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY-NGSVSGQLKNF 92 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB-TTBE-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE-cCcCChhhhHH
Confidence 44556666777788888999999999986 222 2234566777788766655533 57777777666
Q ss_pred H
Q 017714 313 V 313 (367)
Q Consensus 313 l 313 (367)
+
T Consensus 93 l 93 (152)
T PF03358_consen 93 L 93 (152)
T ss_dssp H
T ss_pred H
Confidence 5
No 205
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=65.66 E-value=61 Score=33.99 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=64.0
Q ss_pred CCceeechh-hH-HHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI-aE-~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..+- .= -..++.|.|++++. -++++++..= .|++-+.| + ..+.+ .++|++++.- + +...
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~e-L-~ta~r--------~~lpi~ivV~NN~~~~~ 483 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQE-L-SVIKE--------LSLPVKVVILNNEALGM 483 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHH-H-HHHHH--------hCCCeEEEEEECchHHH
Confidence 778886532 11 12666788887774 3566655432 24333322 3 22332 4777766642 2 3210
Q ss_pred --------CCCCC------chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 --------GVGAQ------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 --------g~G~t------H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
..+.. ....+..+-+++ |+.-+...+.+|+..+++++++.++|.+|-
T Consensus 484 i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 544 (571)
T PRK07710 484 VRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVID 544 (571)
T ss_pred HHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 00100 101123455555 788888999999999999999989999984
No 206
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=65.36 E-value=15 Score=30.74 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 254 l~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
-.|++.|++.||+.. +.. .++..+.+ ...+.||++++..
T Consensus 44 ~~a~~~l~~~Gid~~--~~~--~~l~~~~~----~~~DlIv~m~~~~ 82 (140)
T smart00226 44 PRAVEVLKEHGIALS--HHA--SQLTSSDF----KNADLVLAMDHSH 82 (140)
T ss_pred HHHHHHHHHcCcCcc--cee--ccCCHHHH----HhCCEEEEeCHHH
Confidence 356777888899875 222 27776644 4578999998854
No 207
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=65.05 E-value=27 Score=25.87 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=35.2
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc--CCeEEEEeC
Q 017714 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK--TNRLVTVEE 298 (367)
Q Consensus 240 di~Iia~G~-~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~--~~~ivvvEe 298 (367)
++.|++.+. ....|++.+..|+++|+.+.+.... +.+ .+.+. .+++ ...++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~-~~~~~-~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKL-KKQFK-YADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCH-HHHHH-HHHHcCCCEEEEEcH
Confidence 677887776 4568899999999999988774322 233 23333 3333 345666654
No 208
>PRK08266 hypothetical protein; Provisional
Probab=64.70 E-value=42 Score=34.84 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=64.8
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..|. +=-..++.|.|++++. -+++++...- .|.+ ....+-. +.+ .++|++++.- + +...
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~-~~~eL~t-a~~--------~~lpv~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMF-GVQELAT-AVQ--------HNIGVVTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhc-cHHHHHH-HHH--------hCCCeEEEEEeCCcchH
Confidence 788887653 1122446788888774 3566655432 2333 3333322 332 5788877642 3 3310
Q ss_pred ----------C--CCCC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ----------G--VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ----------g--~G~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+.. +.-.+..+.+++ |...+.-.+..|+..+++++++.++|.+|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 521 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLIE 521 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 0 0111 111223455555 777888899999999999999988999874
No 209
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=64.69 E-value=13 Score=30.12 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
..+..+++|.+.|+++|+.++.+|+.. .|++.+.|.+.++.++
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 456778889999999999999999876 7999998888777665
No 210
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=64.41 E-value=15 Score=36.74 Aligned_cols=62 Identities=29% Similarity=0.357 Sum_probs=48.3
Q ss_pred cEEEE---EechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCch
Q 017714 240 DVTIT---AFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGV 305 (367)
Q Consensus 240 di~Ii---a~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGl 305 (367)
.++|+ .||++-..|...++.|.+.|++|.++++.+- |...|.+.+.+++.+++ =.-+..++.
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv-GsPT~~~~~ 312 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV-GSPTINGGA 312 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE-ecCcccCCC
Confidence 46665 6788889999999999999999999999986 88888888888877654 333333443
No 211
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=64.40 E-value=84 Score=27.62 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~ 156 (367)
|.+|+..+- +=-..++.|.|++++- .++++++..- .|.+ ....+.. +.. .++|++++.- ++...
T Consensus 40 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~-~~~el~t-a~~--------~~~p~~ivV~nN~~~~~ 109 (183)
T cd02005 40 GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQM-TVQELST-MIR--------YGLNPIIFLINNDGYTI 109 (183)
T ss_pred CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhc-cHHHHHH-HHH--------hCCCCEEEEEECCCcEE
Confidence 678887521 1223445677776653 3556555422 2433 2223333 322 4667666542 23221
Q ss_pred -----CCCCCc----hhHHHHHHhcC---CCcEEEeeCCHHHHHHHHHHhHc-CCCcEEEe
Q 017714 157 -----GVGAQH----SHCYAAWYASV---PGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL 204 (367)
Q Consensus 157 -----g~G~tH----~~~~~a~~~~i---P~~~V~~P~d~~e~~~~~~~a~~-~~~Pv~ir 204 (367)
+.+..+ ...+..+.... +++......+++|+..+++++++ .++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~lie 170 (183)
T cd02005 110 ERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIE 170 (183)
T ss_pred EEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEE
Confidence 111111 11122444444 23677778999999999999998 78999884
No 212
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=64.17 E-value=44 Score=26.35 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHh-----cCCeEEEEeCCCCCCchHH
Q 017714 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-----KTNRLVTVEEGFPQHGVGA 307 (367)
Q Consensus 238 g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-----~~~~ivvvEe~~~~GGlg~ 307 (367)
..+++|++. +....|.+|.+.|.+.|++..++|+.. .|--.+ +.+.+. ++=..|++... ..||+..
T Consensus 7 ~~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~-~~~~l~~~tg~~tvP~Vfi~g~-~iGG~dd 77 (99)
T TIGR02189 7 EKAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKD-IENALSRLGCSPAVPAVFVGGK-LVGGLEN 77 (99)
T ss_pred cCCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHH-HHHHHHHhcCCCCcCeEEECCE-EEcCHHH
Confidence 356788776 677888899999999999999999884 232222 333332 23245666664 4688765
No 213
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=63.88 E-value=14 Score=30.12 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
..+..+++|.+.|+++|++++.+|+.. .|+..+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 456788899999999999999999986 7999999888877654
No 214
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=63.41 E-value=17 Score=26.38 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=39.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc--CCeEEEEeCCCCCCchHH
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK--TNRLVTVEEGFPQHGVGA 307 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~--~~~ivvvEe~~~~GGlg~ 307 (367)
++|++. +....|.+|.+.|++.|+..+.+|+..- |-..+.+.+.... +=..|+++.. ..||+.+
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~-~igg~~~ 67 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDV-HIGGCDD 67 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCE-EEeChHH
Confidence 444443 5568888999999999999999998753 1111223222222 2245666664 4588654
No 215
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=62.90 E-value=39 Score=35.84 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=62.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEeccccc-HHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFN-FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~-f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..+- +=-..+..|.|++++- -|+++++..=. |++- ...|- .+.+ .++|++++.- ++ ...
T Consensus 424 p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~-~~eL~-Ta~r--------~~lpvi~vV~NN~~~g~ 493 (616)
T PRK07418 424 PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMN-IQELG-TLAQ--------YGINVKTVIINNGWQGM 493 (616)
T ss_pred CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhh-HHHHH-HHHH--------hCCCeEEEEEECCcchH
Confidence 788886421 1112445667766663 46777765322 3332 22232 2333 4788877643 22 110
Q ss_pred ---------CC--CCCc---hhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------GV--GAQH---SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g~--G~tH---~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+. ..+. ...+ ..+-.++ |..-+.-.+++|+..+++.+++.++|++|-
T Consensus 494 i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lIe 555 (616)
T PRK07418 494 VRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLID 555 (616)
T ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 0000 0112 2444555 677778899999999999999999999984
No 216
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=62.77 E-value=66 Score=25.23 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCC
Q 017714 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV 333 (367)
Q Consensus 254 l~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~ 333 (367)
.+.-+.++++|++++|...+. ..+.+...+.+.|++- .+... .-..+.+.+.. ...|+..|...+
T Consensus 17 ~ki~~~~~~~~~~~~v~~~~~------~~~~~~~~~~Diil~~-Pqv~~--~~~~i~~~~~~-----~~~pv~~I~~~~- 81 (96)
T cd05564 17 KKMKKAAEKRGIDAEIEAVPE------SELEEYIDDADVVLLG-PQVRY--MLDEVKKKAAE-----YGIPVAVIDMMD- 81 (96)
T ss_pred HHHHHHHHHCCCceEEEEecH------HHHHHhcCCCCEEEEC-hhHHH--HHHHHHHHhcc-----CCCcEEEcChHh-
Confidence 344456777899987765443 4444555667755543 33211 12223222211 245666655544
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 017714 334 PMPYAANLERMAVPQVLCFLYDSSI 358 (367)
Q Consensus 334 ~~~~~~~l~~~~~l~~~~I~~~~i~ 358 (367)
|..++.+.|++. ++
T Consensus 82 ----------Y~~~dg~~il~~-~~ 95 (96)
T cd05564 82 ----------YGMMNGEKVLKQ-AL 95 (96)
T ss_pred ----------cccCCHHHHHHH-Hh
Confidence 345788888887 64
No 217
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=62.73 E-value=45 Score=35.23 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=63.1
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC-
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA- 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~- 156 (367)
|.+|+..+- +=-..+..|.|++++. -|+++++..=.-.+.....+- .+.. .++|++++.- ++ ...
T Consensus 408 p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~-Ta~r--------~~lpvv~iV~NN~~yg~i 478 (588)
T TIGR01504 408 PRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELA-VGAQ--------HNIPYIHVLVNNAYLGLI 478 (588)
T ss_pred CCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHH-HHHH--------hCCCeEEEEEeCCchHHH
Confidence 788887541 1223455666766664 467776653222222333332 2332 5888877643 32 210
Q ss_pred -----C--C----CCCc-----------hhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEe
Q 017714 157 -----G--V----GAQH-----------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (367)
Q Consensus 157 -----g--~----G~tH-----------~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 204 (367)
. . +... ...+.++-+++ |..-..-.+++|+..+++.+++ .++|.+|-
T Consensus 479 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIe 551 (588)
T TIGR01504 479 RQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVE 551 (588)
T ss_pred HHHHHHhcccccceeeccccccccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 0 0000 01123455556 6677778999999999999995 68999884
No 218
>PLN02790 transketolase
Probab=61.89 E-value=44 Score=35.88 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccccCCCCcccc-EEEEeC-CCCCCCCCCCc---hhHHHHHHhcCCCcEEEee----CCHHHHHHHHH
Q 017714 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGP-NGAAAGVGAQH---SHCYAAWYASVPGLKVLSP----YSSEDARGLLK 192 (367)
Q Consensus 122 ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~-~G~~~g~G~tH---~~~~~a~~~~iP~~~V~~P----~d~~e~~~~~~ 192 (367)
.++|-+.+ ++. .++| ++++.. ++.+. +|++. .......++++ ||.++.+ .|..++..+++
T Consensus 153 ~~~EAl~~-A~~--------~~L~nli~i~d~N~~~i-~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~ 221 (654)
T PLN02790 153 ISNEAASL-AGH--------WGLGKLIVLYDDNHISI-DGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIK 221 (654)
T ss_pred HHHHHHHH-HHH--------hCCCCEEEEEecCCccc-cCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHH
Confidence 55666543 443 5886 565543 34321 23322 12223677888 9999998 57788888888
Q ss_pred HhHc-CCCcEEEec
Q 017714 193 AAIR-DPDPVVFLE 205 (367)
Q Consensus 193 ~a~~-~~~Pv~ir~ 205 (367)
.+.+ .++|++|..
T Consensus 222 ~a~~~~~~P~lI~~ 235 (654)
T PLN02790 222 EAKAVTDKPTLIKV 235 (654)
T ss_pred HHHhcCCCeEEEEE
Confidence 8876 578999853
No 219
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=61.53 E-value=60 Score=33.88 Aligned_cols=111 Identities=16% Similarity=0.069 Sum_probs=60.9
Q ss_pred CCceeechh-hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC-
Q 017714 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA- 156 (367)
Q Consensus 83 p~R~i~~GI-aE~~~vg~AaGlA~~G-~~p~~~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~- 156 (367)
|.+++..+- +=-..++.|.|++++. -++++++. .+. .+.....+- .+.+ .++|++++.- ++ ...
T Consensus 406 ~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~-GDGsf~~~~~el~-ta~~--------~~l~i~~vv~nN~~~~~~ 475 (557)
T PRK08199 406 YRTQLAPTSGSMGYGLPAAIAAKLLFPERTVVAFA-GDGCFLMNGQELA-TAVQ--------YGLPIIVIVVNNGMYGTI 475 (557)
T ss_pred CCeEECCCCccccchHHHHHHHHHhCCCCcEEEEE-cchHhhccHHHHH-HHHH--------hCCCeEEEEEeCCcchHH
Confidence 556655432 1111344567777764 35666664 332 222223332 2333 5788777653 33 210
Q ss_pred -------CCC----CCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 -------GVG----AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 -------g~G----~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
..+ ......+ ..+.+++ |+.-..-.+++|+...++++++.++|++|-
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li~ 534 (557)
T PRK08199 476 RMHQEREYPGRVSGTDLTNPDFAALARAY-GGHGETVERTEDFAPAFERALASGKPALIE 534 (557)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 001 1111112 2455555 677777889999999999999989999884
No 220
>PRK12474 hypothetical protein; Provisional
Probab=61.45 E-value=62 Score=33.50 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=62.1
Q ss_pred CCceeechhh-HHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC--
Q 017714 83 PERVLDTPIT-EAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA-- 156 (367)
Q Consensus 83 p~R~i~~GIa-E~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~-- 156 (367)
|.+|+..+-. =-..+..|.|++++- -++++++..=.-.+.....+ ..+.. .++|++++.- + ++..
T Consensus 380 p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL-~Ta~r--------~~lpv~iiV~NN~~y~~i~ 450 (518)
T PRK12474 380 PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQAL-WTMAR--------ENLDVTVVIFANRSYAILN 450 (518)
T ss_pred CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHH-HHHHH--------HCCCcEEEEEcCCcchHHH
Confidence 7888865321 112445677777763 45666654322223333333 23333 5788766643 2 3220
Q ss_pred ------C---CCCC-------ch-h-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEE
Q 017714 157 ------G---VGAQ-------HS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 203 (367)
Q Consensus 157 ------g---~G~t-------H~-~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~i 203 (367)
+ .+.. +. . .+..+-+++ |..-..-.+++|+..+++++++.++|.+|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~rv~~~~eL~~al~~a~~~~~p~li 514 (518)
T PRK12474 451 GELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GVEASRATTAEEFSAQYAAAMAQRGPRLI 514 (518)
T ss_pred HHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 0 0100 10 0 122455555 66778889999999999999998999987
No 221
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=61.27 E-value=34 Score=33.37 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=50.0
Q ss_pred eeCCcEEEEEech-hHHHHHHHHHHHHhcCCc-eEEEEeeecCCCCHHHH-----HHHHhcCCeEEEEeCCCC
Q 017714 236 REGKDVTITAFSK-IVGLSLKAAEILAKEGIS-AEVINLRSIRPLDRSTI-----NASVRKTNRLVTVEEGFP 301 (367)
Q Consensus 236 ~~g~di~Iia~G~-~v~~al~Aa~~L~~~Gi~-v~vi~~~~i~P~d~~~l-----~~~~~~~~~ivvvEe~~~ 301 (367)
+.++ =+|+++|. ...+..+|.+.++++|.. +.++++.+.+|-|.+.+ .++.......|=+-||+.
T Consensus 145 ~~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~ 216 (347)
T COG2089 145 KKGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTL 216 (347)
T ss_pred hcCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCcc
Confidence 3455 46889995 567888999999998765 89999999999988753 344455677788889874
No 222
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=60.68 E-value=30 Score=36.15 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=55.8
Q ss_pred HHHHHHHHhccCCeeEEecccccHH-HHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCC-CCC-------------
Q 017714 96 FTGIGVGAAYYGLKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAA-AGV------------- 158 (367)
Q Consensus 96 ~vg~AaGlA~~G~~p~~~~~~~~f~-~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~-~g~------------- 158 (367)
.++.|.|++++--++++++. .+.. +.....+-. +. +.++|++++.- + |.. .+.
T Consensus 430 ~lpaaiGaala~~~~vv~i~-GDGsf~~~~~eL~T-a~--------r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~~ 499 (568)
T PRK07449 430 LLSTAAGVARASAKPTVALI-GDLSFLHDLNGLLL-LK--------QVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFERF 499 (568)
T ss_pred HHHHHHHHHhcCCCCEEEEe-chHHhhcCcHHHHh-hc--------ccCCCeEEEEEECCCCccccCCCCCCCcchhhHh
Confidence 57788888887456677665 3322 222222221 22 25788776643 3 321 110
Q ss_pred -CCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 159 -GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 159 -G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+..+.-.+.++-.++ |+.-+...+++|+..+++++++.++|++|-
T Consensus 500 ~~~~~~~df~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 545 (568)
T PRK07449 500 FGTPHGVDFAHAAAMY-GLEYHRPETWAELEEALADALPTPGLTVIE 545 (568)
T ss_pred hcCCCCCCHHHHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 001101122333333 556677899999999999999989999984
No 223
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=60.39 E-value=59 Score=34.19 Aligned_cols=109 Identities=25% Similarity=0.283 Sum_probs=61.7
Q ss_pred CCceeechhhHHHH----HHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CC
Q 017714 83 PERVLDTPITEAGF----TGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GA 154 (367)
Q Consensus 83 p~R~i~~GIaE~~~----vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~ 154 (367)
|.+|+..+ -... ++.|.|++++. -+|++++..= .|.+-+ ..+ ..+.. .++|++++.- + +.
T Consensus 420 p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL-~Tavr--------~~lpvi~vV~NN~~y 487 (579)
T TIGR03457 420 PRKFLAPM--SFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSM-NEI-MTAVR--------HDIPVTAVVFRNRQW 487 (579)
T ss_pred CCeEEcCC--ccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccH-HHH-HHHHH--------hCCCeEEEEEECcch
Confidence 78999653 2333 44777777774 4677766532 233322 222 22332 5888777643 3 22
Q ss_pred CC---------C---CCCC-chh-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc---CCCcEEEe
Q 017714 155 AA---------G---VGAQ-HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (367)
Q Consensus 155 ~~---------g---~G~t-H~~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~---~~~Pv~ir 204 (367)
.. + .+.. +.. .+..+-.++ |..-+.-.+++|+...++.+++ .++|++|-
T Consensus 488 g~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 488 GAEKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred HHHHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 10 0 0100 111 122444555 6666778999999999999987 46798884
No 224
>PRK07064 hypothetical protein; Provisional
Probab=59.90 E-value=46 Score=34.57 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=61.8
Q ss_pred CCceeechh-hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC--
Q 017714 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA-- 156 (367)
Q Consensus 83 p~R~i~~GI-aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~-- 156 (367)
|.+++..+- +=-..++.|.|++++. -++++++..=.-.+.....|-. +.. .++|++++.- + |...
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~T-a~~--------~~lpv~ivV~NN~~yg~~~ 466 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELAT-AVQ--------ENANMVIVLMNDGGYGVIR 466 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHH-HHH--------hCCCeEEEEEeCChhHHHH
Confidence 666665421 1112345677777764 4666666532222222233322 322 4788777643 2 2210
Q ss_pred -------C---CCC-CchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 -------G---VGA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 -------g---~G~-tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+. .|.-.+..+-+++ |+.-....+++|+..+++.+++.++|.+|-
T Consensus 467 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (544)
T PRK07064 467 NIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLVE 524 (544)
T ss_pred HHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 0 011 1211223455555 667788899999999999999989999984
No 225
>PRK07586 hypothetical protein; Validated
Probab=59.78 E-value=1.1e+02 Score=31.52 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCceeechh-hHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEe-CC-CCCC--
Q 017714 83 PERVLDTPI-TEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA-- 156 (367)
Q Consensus 83 p~R~i~~GI-aE~~~vg~AaGlA~~-G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~-G~~~-- 156 (367)
|.+|+..+- +=-..+..|.|++++ .-++++++..=.-.+.....+- .+.. .++|++++. .+ +...
T Consensus 376 ~~~~~~~~~g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~-Ta~~--------~~lpv~ivV~NN~~y~~~~ 446 (514)
T PRK07586 376 PHDWLTLTGGAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALW-TQAR--------ENLDVTTVIFANRAYAILR 446 (514)
T ss_pred CCCEEccCCcccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHH-HHHH--------cCCCCEEEEEeCchhHHHH
Confidence 788886531 111234566677776 3466666653222233333333 2332 578866654 22 2210
Q ss_pred ------C---CCC--------Cchh-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEE
Q 017714 157 ------G---VGA--------QHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 203 (367)
Q Consensus 157 ------g---~G~--------tH~~-~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~i 203 (367)
+ .|. .+.. .+..+-+++ |..-..-.+++|+..+++++++.++|.+|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 447 GELARVGAGNPGPRALDMLDLDDPDLDWVALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred HHHHHhcCCCCCccccccccCCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 0 010 0101 222444444 55666779999999999999998999988
No 226
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=59.68 E-value=46 Score=25.25 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=38.3
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHH-HhcCCeEEEEeCCC
Q 017714 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEGF 300 (367)
Q Consensus 240 di~Iia~G~----~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~-~~~~~~ivvvEe~~ 300 (367)
.++|+..+. ....|++.++.|++.|+++.+ |.+. +.+... +..+ ..+.+.++++-+..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~-i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVK-FADADLIGIPYRIVVGKKS 65 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccc-hhHHHhcCCCEEEEECCch
Confidence 467777665 456888889999999999987 4442 455444 3322 34566777777654
No 227
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=59.48 E-value=52 Score=32.25 Aligned_cols=108 Identities=20% Similarity=0.196 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcc--CCeeEEecccccHH---HHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchh---
Q 017714 93 EAGFTGIGVGAAYY--GLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH--- 164 (367)
Q Consensus 93 E~~~vg~AaGlA~~--G~~p~~~~~~~~f~---~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~--- 164 (367)
+|-=+|..+++|.. +-.-++.++|.+.. -..||-+.+ +++ .++|+||++-+ -.+|.|++|.-
T Consensus 169 AQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM-A~L--------W~LP~IFvCEN-N~yGMGTs~~Rasa 238 (394)
T KOG0225|consen 169 AQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM-AAL--------WKLPVIFVCEN-NHYGMGTSAERASA 238 (394)
T ss_pred cCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH-HHH--------hCCCEEEEEcc-CCCccCcchhhhhc
Confidence 34444444444443 44445555555433 144555433 333 49999999863 12467777732
Q ss_pred HHHHHHhc--CCCcEEEeeCCHHHHHHHHHHhH----cCCCcEEEeccccccC
Q 017714 165 CYAAWYAS--VPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELLYG 211 (367)
Q Consensus 165 ~~~a~~~~--iP~~~V~~P~d~~e~~~~~~~a~----~~~~Pv~ir~~~~~~~ 211 (367)
..+-+.|. |||+.| .-.|.--++.+.++|. +.++|+++-.....|+
T Consensus 239 ~teyykRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~ 290 (394)
T KOG0225|consen 239 STEYYKRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYH 290 (394)
T ss_pred ChHHHhccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeec
Confidence 22345554 898865 3444444555555554 4589999965544443
No 228
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=58.35 E-value=53 Score=29.50 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=52.0
Q ss_pred echhHHHHHHHHHHHHhcCCceEEEEeeec--CCC----------------C-HHHHHHHHhcCCeEEEEeCCCCCCchH
Q 017714 246 FSKIVGLSLKAAEILAKEGISAEVINLRSI--RPL----------------D-RSTINASVRKTNRLVTVEEGFPQHGVG 306 (367)
Q Consensus 246 ~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i--~P~----------------d-~~~l~~~~~~~~~ivvvEe~~~~GGlg 306 (367)
+|++...+..+++.+++.|.++++++++-. +|- | .+.|.+.+..++.||+.=. ...|++.
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsP-vy~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSP-VYFGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCC-eecCCch
Confidence 588888888889999999999999999854 221 2 3556666777887776555 4578999
Q ss_pred HHHHHHHHH
Q 017714 307 AEICASVIE 315 (367)
Q Consensus 307 ~~v~~~l~~ 315 (367)
+.+..++-.
T Consensus 92 a~~K~fiDR 100 (207)
T COG0655 92 AQMKAFIDR 100 (207)
T ss_pred HHHHHHHhh
Confidence 988888744
No 229
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=58.29 E-value=25 Score=26.89 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=39.0
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHH-HhcCCeEEEEeCC
Q 017714 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEG 299 (367)
Q Consensus 240 di~Iia~G~----~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~-~~~~~~ivvvEe~ 299 (367)
++.|++.|. ....|.+.++.|++.|+.+.+-+ .-..+... +..+ ..+...++++-+.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~-~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQ-IKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHH-HHHHHHTTESEEEEEEHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHH-HHHHhhcCCeEEEEECch
Confidence 478888888 45688899999999999988865 33444433 4433 3345667777654
No 230
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=57.94 E-value=30 Score=30.12 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=33.8
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhcCC---ceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 239 KDVTITAFSKIVG----LSLKAAEILAKEGI---SAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 239 ~di~Iia~G~~v~----~al~Aa~~L~~~Gi---~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
..++|+++|+.+. --...+++|++... +++|+|.-+.-|. +...+...+++|+||-
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEe
Confidence 3577888887552 23356666766543 6788888887443 2334445556666654
No 231
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=57.81 E-value=1e+02 Score=25.29 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=47.2
Q ss_pred EEEeeCCHHHHHHHHHHhHcCCCcEEEeccccccCCCCCccccccCCCccccC---CcEEEeeeCCcEEEEEechhHHHH
Q 017714 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPI---GKAKIEREGKDVTITAFSKIVGLS 253 (367)
Q Consensus 177 ~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~---Gk~~v~~~g~di~Iia~G~~v~~a 253 (367)
.|+.|.+.+|+..++++|.+.+.|+.++-....+. . .....+...+.. .+...+.+....+.+..|......
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~-~----~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWT-G----QSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSS-S----TTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc-c----ccccCCcEEEeeccccccccccccceeEEEeccccchhc
Confidence 48999999999999999999999999985322111 0 000011111222 222233445677788888888876
Q ss_pred HHH
Q 017714 254 LKA 256 (367)
Q Consensus 254 l~A 256 (367)
.+.
T Consensus 78 ~~~ 80 (139)
T PF01565_consen 78 YEA 80 (139)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 232
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=57.65 E-value=1e+02 Score=32.25 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=62.4
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..|- +=-..+..|.|++++. -++++++..= .|.+-+ ..| ..+.. .++|++++.- ++ ...
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~-~eL-~Ta~r--------~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNI-QEL-STALQ--------YELPVLVLNLNNRYLGM 480 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccH-HHH-HHHHH--------hCCCeEEEEEeCchhhH
Confidence 788887641 1123556777777773 3556655432 233332 222 23333 5888877653 32 210
Q ss_pred --------CCCCC-c----hhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC---CCcEEEe
Q 017714 157 --------GVGAQ-H----SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (367)
Q Consensus 157 --------g~G~t-H----~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~---~~Pv~ir 204 (367)
..+.. + ...| ..+-+++ |..-+.-.++.|+..+++.+++. ++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIe 544 (574)
T PRK07979 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFVD 544 (574)
T ss_pred HHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEEE
Confidence 01110 0 0112 2455555 56667789999999999999985 8899884
No 233
>PRK08611 pyruvate oxidase; Provisional
Probab=57.19 E-value=93 Score=32.72 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=62.4
Q ss_pred CCceeec-hhhH-HHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC-
Q 017714 83 PERVLDT-PITE-AGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA- 156 (367)
Q Consensus 83 p~R~i~~-GIaE-~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~- 156 (367)
|.+|+.. +..- -..+..|.|++++- -++++++..-.-.+.....+- .+.. .++|++++.- + +...
T Consensus 398 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~-Ta~r--------~~l~~iivV~NN~~~g~i 468 (576)
T PRK08611 398 NQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFV-TAVK--------YKLPIVVVVLNNQQLAFI 468 (576)
T ss_pred CCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHH-HHHH--------hCCCeEEEEEeCCcchHH
Confidence 6777752 2111 12455666766653 467776653222222333332 2333 5788766542 2 2220
Q ss_pred -----CCCC----Cc--hhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 -----GVGA----QH--SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 -----g~G~----tH--~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
..+. +. .-.+.++-+++ |..-....+++|+..+++++++.++|++|-
T Consensus 469 ~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (576)
T PRK08611 469 KYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVIID 526 (576)
T ss_pred HHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0010 11 01122444555 677788899999999999999999999985
No 234
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=56.98 E-value=47 Score=25.04 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=36.9
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHH-HhcCCeEEEEeCC
Q 017714 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEG 299 (367)
Q Consensus 240 di~Iia~G~----~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~-~~~~~~ivvvEe~ 299 (367)
++.|+..+. ....|++.++.|+..|+.+.+-+ .. +.+... +..+ ..+...++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~-~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKK-FREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHH-HHHHHhCCCCEEEEECCC
Confidence 567777764 45788888999999999888743 22 455444 3222 2234567877764
No 235
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=56.66 E-value=20 Score=26.21 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc-CCeEEEEeCCCCCCchH
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVG 306 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~ivvvEe~~~~GGlg 306 (367)
.....|.+|.+.|++.|+..+.+|+.. .|-..+.+.+ ... +=.++++++....+|+-
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence 345678888889999999999999975 2222232322 121 22467775544556664
No 236
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=56.42 E-value=80 Score=27.89 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhccCCeeEEe
Q 017714 93 EAGFTGIGVGAAYYGLKPVVE 113 (367)
Q Consensus 93 E~~~vg~AaGlA~~G~~p~~~ 113 (367)
+.++-..++++|.+|+..++.
T Consensus 69 ~~~~~~~iaa~a~aG~~VIvD 89 (174)
T PF07931_consen 69 YAAMHAAIAAMARAGNNVIVD 89 (174)
T ss_dssp HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEe
Confidence 444444455555555555554
No 237
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=56.35 E-value=85 Score=27.96 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=44.5
Q ss_pred echhHHHHHHHHHHHHh-cCCceEEEEeeecCCCCH--------------HHHHHHHhcCCeEEEEeCCCCCCchHHHHH
Q 017714 246 FSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDR--------------STINASVRKTNRLVTVEEGFPQHGVGAEIC 310 (367)
Q Consensus 246 ~G~~v~~al~Aa~~L~~-~Gi~v~vi~~~~i~P~d~--------------~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~ 310 (367)
+|++-..|..+++.+++ .|+++++++++...|-+. .. .+.+..++.|++.=. ...|++...+.
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP-ty~g~~~~~lk 89 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVAT-PDELADYDAIIFGTP-TRFGNMAGQMR 89 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccC-HHHHHhCCEEEEEec-ccCCCchHHHH
Confidence 45566677778888887 899999999975433111 11 244556776555443 34788888888
Q ss_pred HHHHH
Q 017714 311 ASVIE 315 (367)
Q Consensus 311 ~~l~~ 315 (367)
.++..
T Consensus 90 ~fld~ 94 (200)
T PRK03767 90 NFLDQ 94 (200)
T ss_pred HHHHH
Confidence 77754
No 238
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=56.00 E-value=1.2e+02 Score=31.71 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=64.0
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..+- +=-..+..|.|++++. -++++++..= .|++-+ ..|- .+.. .++|++++.- ++ ...
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~-~EL~-Ta~r--------~~lpv~~vV~NN~~y~~ 480 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNI-QELS-TALQ--------YDIPVKIINLNNRFLGM 480 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccH-HHHH-HHHH--------cCCCeEEEEEeCCccHH
Confidence 788987642 2224566777777774 3566665432 233333 3332 2333 5888877653 33 210
Q ss_pred --------CCCC-Cc----hhH-HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-CCcEEEe
Q 017714 157 --------GVGA-QH----SHC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (367)
Q Consensus 157 --------g~G~-tH----~~~-~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 204 (367)
..+. .+ ... +.++-+++ |..-..-.++.|+..+++.+++. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lIe 542 (572)
T PRK08979 481 VKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFVD 542 (572)
T ss_pred HHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0010 00 011 22455555 66778889999999999999985 8898883
No 239
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=55.39 E-value=21 Score=28.88 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
..+..|.+|.+.|+++|+..+.+|+.. .|.+.+.|.+.+++++
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~~ 49 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKSG 49 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHcC
Confidence 456778889999999999999999885 6888888877776554
No 240
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=55.17 E-value=47 Score=28.15 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=33.3
Q ss_pred EEEEEechhHH----HHHHHHHHHHhc---CCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 241 VTITAFSKIVG----LSLKAAEILAKE---GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 241 i~Iia~G~~v~----~al~Aa~~L~~~---Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
++|+++|+... ....+++.|++. .-++++++..+.- ..+...+.+++++|+||-
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~----~~l~~~l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG----LELLPYIEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhcCCEEEEEEc
Confidence 35777777662 345567777654 3357888887752 223344556777777776
No 241
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=54.96 E-value=67 Score=31.34 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=54.3
Q ss_pred EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC--eEEEEeCCCCCCchHHHHHH
Q 017714 234 IEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVEEGFPQHGVGAEICA 311 (367)
Q Consensus 234 v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~--~ivvvEe~~~~GGlg~~v~~ 311 (367)
++.+|..++++.+|..-.+ |++.++.-|.+|.+|-...=.-.+.|.|.+.+.+++ .+.+....+. .|.-+.+.+
T Consensus 88 ~lePgd~vLv~~~G~wg~r---a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsS-TgV~q~~~~ 163 (385)
T KOG2862|consen 88 LLEPGDNVLVVSTGTWGQR---AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSS-TGVLQDLLA 163 (385)
T ss_pred hcCCCCeEEEEEechHHHH---HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcc-ccccchHHH
Confidence 4558889999999998776 455666669999999776667788899988777654 3444454444 455555444
Q ss_pred HHHH
Q 017714 312 SVIE 315 (367)
Q Consensus 312 ~l~~ 315 (367)
...+
T Consensus 164 ~~g~ 167 (385)
T KOG2862|consen 164 ISGE 167 (385)
T ss_pred HHHH
Confidence 4433
No 242
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=54.75 E-value=34 Score=28.71 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
..+..|.+|.+.|+++|+..+++|+.. .|++.+.|.+.+++++
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKTE 50 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHhC
Confidence 456788889999999999999999875 7999998888877653
No 243
>PRK11269 glyoxylate carboligase; Provisional
Probab=54.44 E-value=1.3e+02 Score=31.72 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=64.3
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|++.|- . =-..+..|.|++++. -|+++++..= .|++. ...+-. +.. .++|++++.- ++ ...
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~-~~eL~T-a~~--------~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFL-IEELAV-GAQ--------FNLPYIHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcC-HHHHHH-HHH--------hCCCeEEEEEeCCchhH
Confidence 788888652 2 222566788888774 4677766532 23332 223322 222 5788777643 22 210
Q ss_pred ------C--CC----CC-----------chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEe
Q 017714 157 ------G--VG----AQ-----------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (367)
Q Consensus 157 ------g--~G----~t-----------H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 204 (367)
+ .. .. +.-.+..+-+++ |..-....+++|+..+++++++ .++|.+|-
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lie 552 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVE 552 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 00 00 001122455555 6778888999999999999985 68899883
No 244
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=54.26 E-value=69 Score=33.85 Aligned_cols=112 Identities=14% Similarity=0.055 Sum_probs=66.4
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC-
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA- 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~- 156 (367)
|.+|+..+- +=-..+..|.|++++. -|+++++..=.-.+.....|- .+.. .++|++++.- + ++..
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~-Ta~r--------~~lpvi~vV~NN~~y~~i 490 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMS-TAVQ--------YNLPVKIFILNNQYMGMV 490 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHH-HHHH--------hCCCeEEEEEeCCccHHH
Confidence 788997532 2223556777777774 467777653222222323332 2333 5788777643 3 3310
Q ss_pred --------CC--CCCc--hhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 --------GV--GAQH--SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 --------g~--G~tH--~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+. ...+ ...+ ..+-+++ |+.-+.-.++.|+..+++.+++.++|.+|-
T Consensus 491 ~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 550 (595)
T PRK09107 491 RQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIFD 550 (595)
T ss_pred HHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 10 1111 0122 3455556 777788899999999999999999999984
No 245
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=54.00 E-value=35 Score=26.96 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
..+..|.+|.+.|+++|++.+.+|+.. .|.+.+.+.+.+.+.+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhcC
Confidence 456788899999999999999999874 7888888887776654
No 246
>PRK10126 tyrosine phosphatase; Provisional
Probab=53.82 E-value=20 Score=30.52 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 255 ~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
.|++.|++.||+.+ -+.-++++.+.+. ..+.||++|+.+
T Consensus 48 ~a~~~l~~~Gid~~---~h~sr~lt~~~~~----~~DlIl~Md~~~ 86 (147)
T PRK10126 48 TAISVAAEHQLSLE---GHCARQISRRLCR----NYDLILTMEKRH 86 (147)
T ss_pred HHHHHHHHcCCCcC---CCccccCCHHHhc----cCCEEEECCHHH
Confidence 56677888898853 2456777777543 578999998754
No 247
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=53.73 E-value=24 Score=29.50 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 254 l~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
..|.+.|++.|++. +-++-++++...+ .+.+.||++++..
T Consensus 48 ~~a~~~l~~~Gid~---s~h~s~~l~~~~~----~~aDlIi~m~~~~ 87 (141)
T cd00115 48 PRAIAVLAEHGIDI---SGHRARQLTEDDF----DEFDLIITMDESN 87 (141)
T ss_pred HHHHHHHHHcCCCc---ccCeeeeCCHHHH----HhCCEEEEECHHH
Confidence 34666788889887 3466677777543 4578999998854
No 248
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=53.54 E-value=2.1e+02 Score=30.00 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=60.8
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEe-CC-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~-G~~~ 156 (367)
|.+|+..+. +=-..++.|.|++++- -|+++.+..= .|++- ...+ ..+.. .++|++++. .+ +...
T Consensus 398 ~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~-~~eL-~Tavr--------~~lpi~~VV~NN~~yg~ 467 (575)
T TIGR02720 398 KNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMT-MQDL-LTQVQ--------YHLPVINIVFSNCTYGF 467 (575)
T ss_pred CCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhh-HHHH-HHHHH--------hCCCeEEEEEeCCccHH
Confidence 678886642 1112344555555553 3566665432 23332 3333 23333 588887764 23 2221
Q ss_pred -------CCCCCc-----hhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH--cCCCcEEEe
Q 017714 157 -------GVGAQH-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI--RDPDPVVFL 204 (367)
Q Consensus 157 -------g~G~tH-----~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~--~~~~Pv~ir 204 (367)
..+... .-.+.++-+++ |..-..-.+..|+...+++++ +.++|++|-
T Consensus 468 i~~~~~~~~~~~~~~~~~~~df~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~lie 528 (575)
T TIGR02720 468 IKDEQEDTNQPLIGVDFNDADFAKIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLID 528 (575)
T ss_pred HHHHHHHhCCCcccccCCCCCHHHHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 011111 01123455555 566667799999999999999 778999884
No 249
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=52.58 E-value=47 Score=28.18 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=32.7
Q ss_pred EEEEEechhHH----HHHHHHHHHHhcC--CceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 241 VTITAFSKIVG----LSLKAAEILAKEG--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 241 i~Iia~G~~v~----~al~Aa~~L~~~G--i~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
++|+++|+... ....+++.|++.. -+++++|..+.- .+ +...+.+++++|+||-
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~-l~~~l~~~d~vIiVDA 60 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---ME-VMFRARGAKQLIIIDA 60 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HH-HHHHhcCCCEEEEEEe
Confidence 35777777652 4456677776643 247788887762 22 3344556677777776
No 250
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=52.52 E-value=69 Score=33.67 Aligned_cols=111 Identities=18% Similarity=0.121 Sum_probs=62.3
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..+- +=-..+..|.|++++. -++++++..- .|.+.+ ..+- .+.. .++|++++.- ++ ...
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~-~el~-Ta~~--------~~lpi~~vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNI-QELQ-TIAE--------NNIPVKVFIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccH-HHHH-HHHH--------hCCCeEEEEEECCccHH
Confidence 778886531 1224566777777764 3566666532 243333 3333 3333 5888877653 32 210
Q ss_pred -C------CC-----CCchhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 -G------VG-----AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 -g------~G-----~tH~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
. .+ ......+ ..+-+++ |..-..-.++.|+..+++.+.+.++|.+|-
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 541 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVVD 541 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 0100112 2444444 555555689999999999999999999884
No 251
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=52.30 E-value=1.2e+02 Score=32.02 Aligned_cols=112 Identities=15% Similarity=0.025 Sum_probs=65.1
Q ss_pred CCceeechh-hHH-HHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCCC-
Q 017714 83 PERVLDTPI-TEA-GFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA- 156 (367)
Q Consensus 83 p~R~i~~GI-aE~-~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~- 156 (367)
|.+|++.|- .-. ..++.|.|++++. -++++++..=.-.+.....| ..+.. .++|++++.- ++...
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL-~Ta~~--------~~lpv~ivV~NN~~~g~i 507 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQEL-ATCAI--------EGIPIKVALINNGNLGMV 507 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHH-HHHHH--------cCCCeEEEEEECCchHHH
Confidence 789997643 323 3677888888884 56777665322122222222 22332 4777666542 22210
Q ss_pred --------C--CCC-----Cch-hH-HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC-CCcEEEe
Q 017714 157 --------G--VGA-----QHS-HC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (367)
Q Consensus 157 --------g--~G~-----tH~-~~-~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 204 (367)
+ ... .|. .. +.++-+++ |+.-+.-.+.+|+..+++.+++. ++|++|-
T Consensus 508 ~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lIe 572 (612)
T PRK07789 508 RQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVID 572 (612)
T ss_pred HHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 000 010 11 23455555 67777889999999999999985 8999984
No 252
>PRK12559 transcriptional regulator Spx; Provisional
Probab=52.05 E-value=46 Score=27.84 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (367)
..+..|.+|.+.|+++|+..+.+|+.. .|++.+.|.+.++++
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~~ 49 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRLT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHHc
Confidence 455778888899999999999999975 799999888887763
No 253
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=51.99 E-value=37 Score=27.47 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (367)
..+..|.+|.+.|+++|++++.+|+.. .|++.+.+.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 566788899999999999999999864 788998888777754
No 254
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=51.67 E-value=1.2e+02 Score=32.00 Aligned_cols=111 Identities=21% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (367)
|.+|+..+- +=-..+..|.|++++- -++++++..= .|++. ...| ..+.. .++|++++.- ++ ...
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~-~~eL-~Ta~~--------~~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMN-LQEL-GTIAQ--------YNLPIKIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhh-HHHH-HHHHH--------hCCCeEEEEEECCcchH
Confidence 788886421 1122556777877763 3566665432 23332 2222 23333 5788777643 33 210
Q ss_pred ---------C---CCC--C-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ---------G---VGA--Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ---------g---~G~--t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+ .+. . |.-.+..+-+++ |..-..-.+++|+..+++.+++.++|.+|-
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 551 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLID 551 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 000 0 111223555666 677778899999999999999989999984
No 255
>PTZ00089 transketolase; Provisional
Probab=51.43 E-value=1.2e+02 Score=32.70 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhccccCCCCcccc-EEEEeC-CCCCCCCCCCch---hHHHHHHhcCCCcEEEeeC----CHHHHHHHHH
Q 017714 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGP-NGAAAGVGAQHS---HCYAAWYASVPGLKVLSPY----SSEDARGLLK 192 (367)
Q Consensus 122 ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~-~G~~~g~G~tH~---~~~~a~~~~iP~~~V~~P~----d~~e~~~~~~ 192 (367)
.+||-+. .++. .++| ++++.. ++.+. +|+++. ......++++ ||.++.+. |..++..+++
T Consensus 164 ~~~EAl~-~A~~--------~~L~nLi~i~d~N~~~i-~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~ 232 (661)
T PTZ00089 164 VSQEALS-LAGH--------LGLEKLIVLYDDNKITI-DGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIE 232 (661)
T ss_pred HHHHHHH-HHHH--------hCCCCEEEEEECCCccc-ccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Confidence 5566653 3443 5776 555543 34321 344432 2233688888 99999984 6777777888
Q ss_pred HhHcC-CCcEEEec
Q 017714 193 AAIRD-PDPVVFLE 205 (367)
Q Consensus 193 ~a~~~-~~Pv~ir~ 205 (367)
.+.+. ++|++|..
T Consensus 233 ~a~~~~~~P~~I~~ 246 (661)
T PTZ00089 233 EAKKSKGKPKLIIV 246 (661)
T ss_pred HHHhcCCCcEEEEE
Confidence 77765 68999864
No 256
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=51.39 E-value=52 Score=29.05 Aligned_cols=84 Identities=21% Similarity=0.126 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhHcCCCcEEEeccccccCCCCCccccccCCCccc--------cCCcEEEeeeCCcEEEEEechhHHHHHH
Q 017714 184 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCL--------PIGKAKIEREGKDVTITAFSKIVGLSLK 255 (367)
Q Consensus 184 ~~e~~~~~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~--------~~Gk~~v~~~g~di~Iia~G~~v~~al~ 255 (367)
-+|..+++-+|+-.++-+||.--..+ . .+.........++ ..++...+.+-.++.|++-.+.-..+.+
T Consensus 24 iedaARlLAQA~vgeG~IYi~G~~Em---~-~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~ 99 (172)
T PF10740_consen 24 IEDAARLLAQAIVGEGTIYIYGFGEM---E-AVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVA 99 (172)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-GGG---G-GGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChH---H-HHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHH
Confidence 46788899999999999999521100 0 0000000000011 1122234455567999999999889999
Q ss_pred HHHHHHhcCCceEEEE
Q 017714 256 AAEILAKEGISAEVIN 271 (367)
Q Consensus 256 Aa~~L~~~Gi~v~vi~ 271 (367)
.+++|.++|+.+-+|.
T Consensus 100 ~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 100 LAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHT--EEEEE
T ss_pred HHHHHHHCCCCEEEEE
Confidence 9999999999999997
No 257
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=44 Score=25.29 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=38.7
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHh--cCCeEEEEeCCCC
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR--KTNRLVTVEEGFP 301 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~--~~~~ivvvEe~~~ 301 (367)
++|.+. +....|..|.+.|.++|++...+++..-.+-..+...+... .+=..|++.+...
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~i 64 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHV 64 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEE
Confidence 445443 33778889999999999999999998765522222222332 2335777788543
No 258
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=51.02 E-value=75 Score=31.13 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=49.6
Q ss_pred eCCcEEEEEec-hhHHHHHHHHHHHHhcCCc---eEEEEeeecCCCCHHH-----HHHHHhcCCeEEEEeCCCCCCchHH
Q 017714 237 EGKDVTITAFS-KIVGLSLKAAEILAKEGIS---AEVINLRSIRPLDRST-----INASVRKTNRLVTVEEGFPQHGVGA 307 (367)
Q Consensus 237 ~g~di~Iia~G-~~v~~al~Aa~~L~~~Gi~---v~vi~~~~i~P~d~~~-----l~~~~~~~~~ivvvEe~~~~GGlg~ 307 (367)
.|+- +|+++| +...+..+|++.+++.|.+ +.++.+.+-+|-+.+. |..+-+.++..|-+-+|+. |...
T Consensus 132 ~gkP-vilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~--G~~~ 208 (329)
T TIGR03569 132 FGKP-VILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTL--GIEA 208 (329)
T ss_pred cCCc-EEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCc--cHHH
Confidence 3444 678888 5678899999999988874 8899988888877763 3322234665566678863 4544
Q ss_pred HHHHH
Q 017714 308 EICAS 312 (367)
Q Consensus 308 ~v~~~ 312 (367)
.+++.
T Consensus 209 ~~aAv 213 (329)
T TIGR03569 209 PIAAV 213 (329)
T ss_pred HHHHH
Confidence 44443
No 259
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=50.66 E-value=1.7e+02 Score=30.86 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=61.9
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeeEEeccccc-HHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFN-FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~~~~-f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..+- . =-..++.|.|++++. -+|++++..=. |.+ ....+.. +.. .++|++++.- + +...
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~-~~~el~T-a~~--------~~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGI-SMNEVMT-AVR--------HNWPVTAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhc-cHHHHHH-HHH--------hCCCeEEEEEeCchhHH
Confidence 788886432 1 112556777777774 46777665322 333 2333333 332 5888877653 3 3210
Q ss_pred ---------C---CCCCchh-HH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC---CCcEEEe
Q 017714 157 ---------G---VGAQHSH-CY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (367)
Q Consensus 157 ---------g---~G~tH~~-~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~---~~Pv~ir 204 (367)
+ .+..... .+ ..+-+++ |..-+.-.++.|+...++.+++. ++|.+|-
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIe 558 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVIE 558 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 0 0111111 12 2344444 55556678999999999999975 4899874
No 260
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=50.63 E-value=51 Score=29.70 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=38.7
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhc---CCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 239 KDVTITAFSKIVG----LSLKAAEILAKE---GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 239 ~di~Iia~G~~v~----~al~Aa~~L~~~---Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
.+++|+++|+.+. .-..+++.|++. .-+++++|..+.-+ .+...+.+.+++|+||-
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~----~ll~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL----NLLGYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHHcCCCEEEEEEC
Confidence 4688999998772 455677888654 23588999888632 33455667777777774
No 261
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=50.45 E-value=34 Score=32.88 Aligned_cols=99 Identities=21% Similarity=0.195 Sum_probs=53.3
Q ss_pred HHHHHHHhc----cCCeeEEecccccHH---HHHHHHHHHHHhhccccCCCCccccEEEEeCC-C--CCCCCC-CCch--
Q 017714 97 TGIGVGAAY----YGLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-G--AAAGVG-AQHS-- 163 (367)
Q Consensus 97 vg~AaGlA~----~G~~p~~~~~~~~f~---~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G--~~~g~G-~tH~-- 163 (367)
+.+|+|.|+ .|.+.++-.++.+.. -..+|-+ |-++. .++|||+++.+ + .++..- .+.+
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~--------~~lPvifvveNN~~aist~~~~~~~~~~ 177 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAAL--------WKLPVIFVVENNQYAISTPTEEQTASPD 177 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHH--------TTTSEEEEEEEESEETTEEHHHHCSSST
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhh--------ccCCeEEEEecCCcccccCccccccccc
Confidence 444445554 365554444444433 2334554 33443 58999999753 3 332100 0110
Q ss_pred hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEec
Q 017714 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (367)
Q Consensus 164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~ 205 (367)
..+.+..-.+|++. +.=.|+.+++.++++|++ .++|++|-.
T Consensus 178 ~~~~a~~~gip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 178 IADRAKGYGIPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp SGGGGGGTTSEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred hhhhhhccCCcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11113333577664 478899999999998886 378999853
No 262
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=48.78 E-value=3.3e+02 Score=28.29 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=84.0
Q ss_pred cccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCee-EE
Q 017714 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VV 112 (367)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p-~~ 112 (367)
..+++..+.++++|.... -+-|+.+- +-. +..+ ..-.++. -=||+++ =.||+++-.|-.++.---+| ++
T Consensus 11 ~~~~~g~~~vA~~Lk~~g--Ve~iFgiV---Gip--V~el-~~aaqal-GIk~I~~-RnEqaA~yAA~A~gyLt~kpGV~ 80 (571)
T KOG1185|consen 11 ASSRHGGELVAAVLKAQG--VEYIFGIV---GIP--VIEL-AVAAQAL-GIKFIGT-RNEQAAVYAASAYGYLTGKPGVL 80 (571)
T ss_pred cccccHHHHHHHHHHHcC--ceEEEEEe---ccc--hHHH-HHHHHHc-CCeEeec-ccHHHHHHHHHHhhhhcCCCeEE
Confidence 345667777888876521 22333332 210 0011 1123455 5789998 59999998888887753344 33
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccc-cEEEEeCCC--CCCCCCCCchhHHH-HHHhcCCCcEEEeeCCHHHHH
Q 017714 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNG--AAAGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDAR 188 (367)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~G--~~~g~G~tH~~~~~-a~~~~iP~~~V~~P~d~~e~~ 188 (367)
.+-+...+.-++--+.|. ++|+ |+++++-.. ...+-|.-+ ..|. .++|..-- -+..|.+..+.-
T Consensus 81 lVvsGPGl~hal~gv~NA----------~~n~wPll~IgGsa~~~~~~rGafQ-e~dQvel~rp~~K-~~~r~~~~~~I~ 148 (571)
T KOG1185|consen 81 LVVSGPGLTHALAGVANA----------QMNCWPLLLIGGSASTLLENRGAFQ-ELDQVELFRPLCK-FVARPTSVRDIP 148 (571)
T ss_pred EEecCChHHHHHHHhhhh----------hhccCcEEEEecccchhhhcccccc-cccHHhhhhhhhh-hccCCCChhhcc
Confidence 332334555555555542 2444 988885211 112334443 2222 45554322 256788888877
Q ss_pred HHHHHhHc-----CCCcEEEecccc
Q 017714 189 GLLKAAIR-----DPDPVVFLENEL 208 (367)
Q Consensus 189 ~~~~~a~~-----~~~Pv~ir~~~~ 208 (367)
..++.|++ .++|+|+-.|..
T Consensus 149 ~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 149 PTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred HHHHHHHHHHhcCCCCceEEecccc
Confidence 77777665 478999976544
No 263
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=48.76 E-value=1.9e+02 Score=25.55 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=45.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCC--CCHHHHHHHHhcCC--eEE-EEeCCC-CCCchHHHHHHHH
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP--LDRSTINASVRKTN--RLV-TVEEGF-PQHGVGAEICASV 313 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P--~d~~~l~~~~~~~~--~iv-vvEe~~-~~GGlg~~v~~~l 313 (367)
++.|||=|..+ |++|.|...+ .+..+-|+...=+| +.-+.|.++++++. .++ -++|.- ..-|.|+....++
T Consensus 1 kVIlvTDGD~~--A~ravE~aa~-~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDEY--AKRAVEIAAK-NIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChHH--HHHHHHHHHH-HhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 46788888754 3445554433 35566666665544 66678888888653 444 455543 3338888888887
Q ss_pred HHh
Q 017714 314 IEE 316 (367)
Q Consensus 314 ~~~ 316 (367)
+.+
T Consensus 78 ~~h 80 (180)
T PF14097_consen 78 ANH 80 (180)
T ss_pred HcC
Confidence 643
No 264
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=48.65 E-value=34 Score=27.81 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (367)
-..+..|.+|.+.|+++|+..+++|+.. .|...+.+.+.++..+
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 3566788889999999999999999964 7888888887777665
No 265
>PRK10638 glutaredoxin 3; Provisional
Probab=48.57 E-value=55 Score=24.54 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=38.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC-CeEEEEeCCCCCCchHH
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHGVGA 307 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~-~~ivvvEe~~~~GGlg~ 307 (367)
+++|++. .....|.+|.+.|+++|+...++|+..-... .+.+.+..... =..|+++. ...||+.+
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g-~~igG~~~ 68 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDA-QHIGGCDD 68 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECC-EEEeCHHH
Confidence 3555553 3456788888999999999999988631111 12233322221 14565554 55688744
No 266
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=48.43 E-value=43 Score=35.45 Aligned_cols=103 Identities=20% Similarity=0.303 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccCCeeEEeccc-ccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC---CCCC----------C
Q 017714 94 AGFTGIGVGAAYYGLKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG---AAAG----------V 158 (367)
Q Consensus 94 ~~~vg~AaGlA~~G~~p~~~~~~-~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G---~~~g----------~ 158 (367)
-+.+|+|.|++.+.-+.++++.. ++|..-.+..|+|.+. .+.+++++.- +. .++| .
T Consensus 431 Gssig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~---------n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~ 501 (640)
T COG4231 431 GSSIGIAGGLSFASTKKIVAVIGDSTFFHSGILALINAVY---------NKANILVVVLDNRTTAMTGGQPHPGTGVAAE 501 (640)
T ss_pred cchhhhccccccccCCceEEEeccccccccCcHHHHHHHh---------cCCCeEEEEEeccchhccCCCCCCCcccccC
Confidence 34467888888665444444432 4566667778888764 4566555421 11 1111 1
Q ss_pred CC-CchhHHHHHHhc--CCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEec
Q 017714 159 GA-QHSHCYAAWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (367)
Q Consensus 159 G~-tH~~~~~a~~~~--iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~ 205 (367)
|. +-....+.+-+. +--+....|-|-.++.++++.|++.++|.+|..
T Consensus 502 g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViia 551 (640)
T COG4231 502 GTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIA 551 (640)
T ss_pred CCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEE
Confidence 10 111223333333 445667779999999999999999999999864
No 267
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=47.83 E-value=12 Score=30.28 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=25.9
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhcCCceEEEEeee
Q 017714 237 EGKDVTITAFSKIVG-LSLKAAEILAKEGISAEVINLRS 274 (367)
Q Consensus 237 ~g~di~Iia~G~~v~-~al~Aa~~L~~~Gi~v~vi~~~~ 274 (367)
+.-|++||++|.... .-.+..+.|+++||.+++++-+.
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~ 90 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPA 90 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHH
Confidence 467999999997643 33456677899999999987653
No 268
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=47.26 E-value=1.1e+02 Score=28.18 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEeeecCCCCH--------HHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHH
Q 017714 251 GLSLKAAEILAKEGISAEVINLRSIRPLDR--------STINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~--------~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
..+..+++.+.++|.+++++|++-+-.++. ..+.+.++..+.+|++=-.+ .+|+...+...+
T Consensus 44 ~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n~sipg~LKNai 113 (219)
T TIGR02690 44 LLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-HGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-ccCcCHHHHHHH
Confidence 344455666776799999999876522221 23566777777766554433 577777666655
No 269
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=47.20 E-value=89 Score=27.08 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=37.5
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhc-C--CceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCC
Q 017714 240 DVTITAFSKIVG----LSLKAAEILAKE-G--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (367)
Q Consensus 240 di~Iia~G~~v~----~al~Aa~~L~~~-G--i~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~ 299 (367)
+++|+++|+... ....+++.|+++ . -+++++|..+.- ..+...+..++++|+|+-.
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~----~~ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG----MELLGDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH----HHHHHHHhCCCEEEEEEec
Confidence 478889998773 456777888654 3 358889888862 2233455567778877763
No 270
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=47.06 E-value=90 Score=29.12 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=44.2
Q ss_pred EEEEEec-hhHHHHHHHHHHH-HhcCCceEEEEeeecCCCCHHH-----HHHHHhcCCeEEEEeCCCCCCchHHHHHHHH
Q 017714 241 VTITAFS-KIVGLSLKAAEIL-AKEGISAEVINLRSIRPLDRST-----INASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 241 i~Iia~G-~~v~~al~Aa~~L-~~~Gi~v~vi~~~~i~P~d~~~-----l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
=+|+++| +...+..+|.+.+ +..+.++.++++.+-+|-+.+. |..+-++++..|=.=+|+. |+...++++.
T Consensus 115 PvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~Ava 192 (241)
T PF03102_consen 115 PVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIAAVA 192 (241)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHHHHH
Confidence 3688999 5668889999999 4557899999999999988764 3333335777788899986 4555555443
No 271
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=46.63 E-value=61 Score=27.24 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=31.8
Q ss_pred EEEechhH----HHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCC
Q 017714 243 ITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (367)
Q Consensus 243 Iia~G~~v----~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~ 299 (367)
|+++|+.. .....+++.|+++ ++++++..+. ...+...+.+.+++|+||-.
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~~--~v~vi~~g~~----~~~ll~~i~~~d~viiVDA~ 56 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQC--GAPVFDGGLD----GFGLLSHLENYDIVIFIDVA 56 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhhC--CCEEEECCCc----HHHHHHHHcCCCEEEEEEee
Confidence 56777665 2455667777663 5778887773 22334455677777777763
No 272
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=46.31 E-value=71 Score=31.31 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=30.7
Q ss_pred ccccEEEEeC-CCCCCCCCCCch---hHHH-HHHh--cCCCcEEEeeCCHHHH----HHHHHHhHcCCCcEEEec
Q 017714 142 ISVPIVFRGP-NGAAAGVGAQHS---HCYA-AWYA--SVPGLKVLSPYSSEDA----RGLLKAAIRDPDPVVFLE 205 (367)
Q Consensus 142 ~~~pvv~~~~-~G~~~g~G~tH~---~~~~-a~~~--~iP~~~V~~P~d~~e~----~~~~~~a~~~~~Pv~ir~ 205 (367)
.++|+++++- ++.... .+++. ..+. .... .+|++.| .-.|..++ ..+++.+.+.++|++|-.
T Consensus 171 ~~LPvi~Vv~NN~~~~~-~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIev 243 (341)
T TIGR03181 171 FKAPVVFFVQNNQWAIS-VPRSKQTAAPTLAQKAIAYGIPGVQV-DGNDVLAVYAVTKEAVERARSGGGPTLIEA 243 (341)
T ss_pred cCCCEEEEEECCCCccc-cchhhhhCCcCHHHHHhhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 6899999875 342211 11111 1111 2333 3555443 23333333 455556666789999843
No 273
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=46.18 E-value=67 Score=26.82 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=32.1
Q ss_pred EEEechhHH----HHHHHHHHHHhcC--CceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCC
Q 017714 243 ITAFSKIVG----LSLKAAEILAKEG--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (367)
Q Consensus 243 Iia~G~~v~----~al~Aa~~L~~~G--i~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~ 299 (367)
|+++|+... ....+++.|+++. -+++++|..+. + ..+...+...+++|+||-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~-~---~~l~~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTL-G---LELLDLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCC-H---HHHHHHHhcCCeEEEEECc
Confidence 566666552 3456677776653 46778888776 2 2233455567777777663
No 274
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=45.54 E-value=1.9e+02 Score=30.01 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=75.4
Q ss_pred ccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHH----HHHHHhccC-CeeE
Q 017714 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTG----IGVGAAYYG-LKPV 111 (367)
Q Consensus 37 ~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg----~AaGlA~~G-~~p~ 111 (367)
++... +.+.|.+.+.. ..+++. |.+... +. ..+.+-..|.+|+..+ -.+.+| .|.|++++. -+++
T Consensus 356 l~~~~-~~~~l~~~l~~-~~iiv~--d~G~~~--~~--~~~~~~~~~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~v 425 (539)
T TIGR03393 356 LSQEN-FWQTLQTFLRP-GDIILA--DQGTSA--FG--AADLRLPADVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRV 425 (539)
T ss_pred cCHHH-HHHHHHHhcCC-CCEEEE--ccCchh--hh--hhhccCCCCCeEEech--hhhhhhhHHHHHHHHHhcCCCCCe
Confidence 44433 45556555542 345444 444321 21 1122222256777654 234444 566666663 3666
Q ss_pred EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC--CCCC-----CCCCCC----chhHHHHHHhcC--C-CcE
Q 017714 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAA-----AGVGAQ----HSHCYAAWYASV--P-GLK 177 (367)
Q Consensus 112 ~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~-----~g~G~t----H~~~~~a~~~~i--P-~~~ 177 (367)
+++..-.-.+.....| ..+.. .++|++++.- ++.. .+.+.. +...+..+-+++ + ++.
T Consensus 426 v~i~GDG~f~m~~~EL-~Ta~~--------~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~ 496 (539)
T TIGR03393 426 ILLIGDGSAQLTIQEL-GSMLR--------DKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSE 496 (539)
T ss_pred EEEEcCcHHHhHHHHH-HHHHH--------cCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccc
Confidence 7665322233333333 23333 5777766642 2322 011111 111222333333 1 234
Q ss_pred EEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 178 VLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 178 V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
-+.-.+..|+..+++.+++.++|++|-
T Consensus 497 ~~~v~~~~el~~al~~a~~~~~p~lie 523 (539)
T TIGR03393 497 CWRVSEAEQLADVLEKVAAHERLSLIE 523 (539)
T ss_pred eEEeccHHHHHHHHHHHhccCCeEEEE
Confidence 677799999999999999999999984
No 275
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=45.21 E-value=39 Score=27.98 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=30.7
Q ss_pred echhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 246 ~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
+|++-..|.+.++.|+++|+++.++++... +.. + ..+...+.++++=.
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~---~~~-~-~~~~~~~~~i~~~s 54 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDF---DDS-P-SDLSEYDLLIFGVS 54 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGS---CHH-H-HHHCTTSEEEEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhh---hhh-h-hhhhhhceeeEeec
Confidence 455556677777788888999999977765 443 2 34445555544433
No 276
>PRK07524 hypothetical protein; Provisional
Probab=44.48 E-value=1.4e+02 Score=30.97 Aligned_cols=111 Identities=22% Similarity=0.251 Sum_probs=62.8
Q ss_pred CCceee-ch-h-hHHHHHHHHHHHhccC-CeeEEeccc-ccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCC
Q 017714 83 PERVLD-TP-I-TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAA 155 (367)
Q Consensus 83 p~R~i~-~G-I-aE~~~vg~AaGlA~~G-~~p~~~~~~-~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~ 155 (367)
|.+|++ .+ . +=-..++.|.|++++. -++++++.. ..|.+.+ ..+. .+.. .++|++++.- + +..
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~-~el~-ta~~--------~~lpi~~vV~NN~~~g 465 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTL-PELA-SAVE--------ADLPLIVLLWNNDGYG 465 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhH-HHHH-HHHH--------hCCCeEEEEEECCchH
Confidence 778886 21 1 1122556778888773 455555543 2244333 2233 2332 5888877643 2 321
Q ss_pred C--------C---CCCC-chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 156 A--------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 156 ~--------g---~G~t-H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
. + .|.. |...+.++..++ |+.-..-.++.|+..+++++++.++|++|-
T Consensus 466 ~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 525 (535)
T PRK07524 466 EIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLIE 525 (535)
T ss_pred HHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 0111 111223455555 555666689999999999999999999984
No 277
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=44.46 E-value=15 Score=29.73 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.8
Q ss_pred CcEEEEEechhH-HHHHHHHHHHHhcCCceEEEEee
Q 017714 239 KDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 239 ~di~Iia~G~~v-~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
-+++||++|... ..-.+..+.|+++||.++++|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 689999999744 23345567889999999998765
No 278
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=44.36 E-value=1e+02 Score=25.25 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=44.7
Q ss_pred EEEEechhHHH-----HHHHHHHHHhcCCceEEEEee-ecCCCCHHHHHHHHhcCC-eEEEEeCCCCC
Q 017714 242 TITAFSKIVGL-----SLKAAEILAKEGISAEVINLR-SIRPLDRSTINASVRKTN-RLVTVEEGFPQ 302 (367)
Q Consensus 242 ~Iia~G~~v~~-----al~Aa~~L~~~Gi~v~vi~~~-~i~P~d~~~l~~~~~~~~-~ivvvEe~~~~ 302 (367)
.++++|..+.. ..+-.+.|.+.|...=+|... .+..+|.+.+ +.+.+.+ .++.+..+...
T Consensus 45 lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i-~~A~~~~lPli~ip~~~~f 111 (123)
T PF07905_consen 45 LVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEII-ELADELGLPLIEIPWEVPF 111 (123)
T ss_pred EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHH-HHHHHcCCCEEEeCCCCCH
Confidence 56777766543 456677888899998888775 8889998866 5667665 68888887654
No 279
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=43.91 E-value=1.7e+02 Score=23.49 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=16.9
Q ss_pred HhCCCHHHHHHHHHHHHhhhc
Q 017714 344 MAVPQVLCFLYDSSIDGCYKF 364 (367)
Q Consensus 344 ~~~l~~~~I~~~~i~~~l~~~ 364 (367)
|..+|.+.|.+. +.++++++
T Consensus 84 Yg~~dg~~vl~~-a~~~~~~~ 103 (106)
T PRK10499 84 YGKVDGLGVLKA-AVAAIKKA 103 (106)
T ss_pred hhcCCHHHHHHH-HHHHHHHh
Confidence 456899999999 99998874
No 280
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=42.86 E-value=1.5e+02 Score=29.25 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=41.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCc-eEEEE------------eeecCCCCHHHHH----------------HHHh
Q 017714 238 GKDVTITAFSKIVGLSLKAAEILAKEGIS-AEVIN------------LRSIRPLDRSTIN----------------ASVR 288 (367)
Q Consensus 238 g~di~Iia~G~~v~~al~Aa~~L~~~Gi~-v~vi~------------~~~i~P~d~~~l~----------------~~~~ 288 (367)
++.+++++.+. ..+..|+..|++.|++ +.+++ +..-..++.+.+. +.++
T Consensus 57 ~~~IvvyC~~G--~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s~~~~~~y~r~i~l~~~g~~~q~~l~ 134 (376)
T PRK08762 57 DREIVLICASG--TRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLTDEQDERYSRHLRLPEVGEEGQRRLL 134 (376)
T ss_pred CCeEEEEcCCC--cHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCCHHHHHHHHHhcchhhcCHHHHHHHh
Confidence 44555555442 3456788888888874 55543 1111112222211 1233
Q ss_pred cCCeEEEEeCCCCCCchHHHHHHHHHHhc
Q 017714 289 KTNRLVTVEEGFPQHGVGAEICASVIEES 317 (367)
Q Consensus 289 ~~~~ivvvEe~~~~GGlg~~v~~~l~~~~ 317 (367)
+. +|+++ + .||+|+.++..|+..+
T Consensus 135 ~~-~Vlvv--G--~GG~Gs~ia~~La~~G 158 (376)
T PRK08762 135 EA-RVLLI--G--AGGLGSPAALYLAAAG 158 (376)
T ss_pred cC-cEEEE--C--CCHHHHHHHHHHHHcC
Confidence 33 56666 3 4999999999998765
No 281
>PRK10824 glutaredoxin-4; Provisional
Probab=42.76 E-value=36 Score=28.00 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=32.0
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceEEEEeee
Q 017714 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRS 274 (367)
Q Consensus 238 g~di~Iia~G----~~v~~al~Aa~~L~~~Gi~v~vi~~~~ 274 (367)
..+|+|++-| +.+..|..|.+.|.+.|++..++|+-.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~ 54 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ 54 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC
Confidence 4679999999 478899999999999999999998853
No 282
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=42.54 E-value=1.1e+02 Score=22.90 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=43.3
Q ss_pred EEEEEechhHHHHHHHHHHHHh-----cCCceEEEEeeecCCCCHHHHHHHHhc---CCeEEEEeCCCCCCchHHHHHHH
Q 017714 241 VTITAFSKIVGLSLKAAEILAK-----EGISAEVINLRSIRPLDRSTINASVRK---TNRLVTVEEGFPQHGVGAEICAS 312 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~-----~Gi~v~vi~~~~i~P~d~~~l~~~~~~---~~~ivvvEe~~~~GGlg~~v~~~ 312 (367)
++|++. +....|.+|.+.|++ .|+....+|+.. .+...+.+.+.... +=..|+++. ...||+.+ +.+.
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g-~~igg~~~-~~~~ 78 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQ-KHIGGCTD-FEAY 78 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECC-EEEcCHHH-HHHH
Confidence 444443 445667777777777 799999999985 33334556555542 224566665 44688754 5555
Q ss_pred HHH
Q 017714 313 VIE 315 (367)
Q Consensus 313 l~~ 315 (367)
+.+
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 544
No 283
>PRK10329 glutaredoxin-like protein; Provisional
Probab=42.53 E-value=1.5e+02 Score=22.39 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=38.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHh-c--CCeEEEEeCCCCCCchH
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-K--TNRLVTVEEGFPQHGVG 306 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~--~~~ivvvEe~~~~GGlg 306 (367)
+++|.+. .....|..|.+.|+++||..+.+|+.. |.+...+.-. . +=.++++++.. .+||.
T Consensus 2 ~v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~-~~Gf~ 65 (81)
T PRK10329 2 RITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLS-WSGFR 65 (81)
T ss_pred EEEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEE-EecCC
Confidence 3555554 555788888999999999999999985 3333222211 1 11456666644 45654
No 284
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=42.28 E-value=1.3e+02 Score=23.55 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=37.2
Q ss_pred EEEEEechhHHHHHHHHHHHHh----cCCceEEEEeee---cCCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 241 VTITAFSKIVGLSLKAAEILAK----EGISAEVINLRS---IRPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~----~Gi~v~vi~~~~---i~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
+.|+++|+..-.+.-|++.|++ .|+++.|---.. ..+++.+.+. ..+.||++=+..
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~----~Ad~vi~~~~~~ 64 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIA----EADAVILAADVP 64 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHh----hCCEEEEecCCC
Confidence 4678888877777766666654 599887664433 5677776554 457777666644
No 285
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=42.14 E-value=51 Score=24.25 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc-CCeEEEEeCCCCCCchHHH
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAE 308 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~ivvvEe~~~~GGlg~~ 308 (367)
-.....|.+|.+.|++.|+..+.+|+..- |-..+.+.+.... +=..|++++. ..||+.+.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~-~igg~~~~ 66 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDV-HVGGCDDL 66 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCE-EEcChHHH
Confidence 35677888999999999999999998742 2112223222221 1245666664 56887654
No 286
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=42.10 E-value=1.9e+02 Score=26.49 Aligned_cols=84 Identities=25% Similarity=0.232 Sum_probs=50.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhcc
Q 017714 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESF 318 (367)
Q Consensus 239 ~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~ 318 (367)
.++.||--=|.+.. |+..| |...+=+.+.|+.+-+.+.++..+.+..+++++-++. ++ =++||..|.++++
T Consensus 95 ~~v~iIPgiSS~q~---a~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~-~~--P~~IA~~L~~~G~ 165 (210)
T COG2241 95 EEVEIIPGISSVQL---AAARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDD-FG--PAEIAKLLTENGI 165 (210)
T ss_pred cceEEecChhHHHH---HHHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCC-CC--HHHHHHHHHhCCC
Confidence 45666652233332 22234 5555545555666888888887776666777777765 22 3789999998875
Q ss_pred CCCCCCe---EEEecCCC
Q 017714 319 GYLDAPV---ERIAGADV 333 (367)
Q Consensus 319 ~~~~~~v---~~ig~~d~ 333 (367)
. ..++ .+++.+|+
T Consensus 166 ~--~~~~~VlE~L~~~~E 181 (210)
T COG2241 166 G--DSRVTVLENLGYPDE 181 (210)
T ss_pred C--CceEEEEcccCCCch
Confidence 3 2332 35566553
No 287
>PLN02409 serine--glyoxylate aminotransaminase
Probab=42.04 E-value=81 Score=31.33 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=21.9
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHh
Q 017714 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR 288 (367)
Q Consensus 236 ~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~ 288 (367)
++|.++++..+|....... +.++..|.++..+....=..+|.+.|.+.++
T Consensus 82 ~~Gd~Vlv~~~~~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~ 131 (401)
T PLN02409 82 SPGDKVVSFRIGQFSLLWI---DQMQRLNFDVDVVESPWGQGADLDILKSKLR 131 (401)
T ss_pred CCCCEEEEeCCCchhHHHH---HHHHHcCCceEEEECCCCCCCCHHHHHHHHh
Confidence 3444555555454432211 2233345555555443222345555555544
No 288
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=41.99 E-value=19 Score=29.49 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=28.1
Q ss_pred eeCCcEEEEEechhH-HHHHHHHHHHHhcCCceEEEEee
Q 017714 236 REGKDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 236 ~~g~di~Iia~G~~v-~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
.+.-|++||++|... ..--+..+.|+++||.+++++..
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 456789999999753 23335567788999999998654
No 289
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=41.86 E-value=95 Score=26.18 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=30.4
Q ss_pred EEEechhHH----HHHHHHHHHHhcC---CceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 243 ITAFSKIVG----LSLKAAEILAKEG---ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 243 Iia~G~~v~----~al~Aa~~L~~~G---i~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
|+++|+... .-..+++.|+++. -+++++|..+.- ..+...+.+++++|+||-
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~----~~l~~~l~~~d~viiVDA 60 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG----LELLDAIEGADRVIVVDA 60 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhCCCEEEEEEc
Confidence 566666552 3445666666542 357788777752 223344556777777765
No 290
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=41.04 E-value=35 Score=29.83 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 253 al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
..++++.|+++|+.+-.|-+ ...+.+.|.+.+.+.++++.+.+
T Consensus 123 ~~~~a~~l~~~gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~~ 165 (185)
T cd01474 123 PEHEAKLSRKLGAIVYCVGV---TDFLKSQLINIADSKEYVFPVTS 165 (185)
T ss_pred hHHHHHHHHHcCCEEEEEee---chhhHHHHHHHhCCCCeeEecCc
Confidence 44566778888887666655 56788888888877777764443
No 291
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=40.99 E-value=1.7e+02 Score=24.15 Aligned_cols=75 Identities=7% Similarity=-0.046 Sum_probs=48.3
Q ss_pred cEEEEEechhHHHHHHHHHHH----HhcCCceEEEEeeec--------------CCCCHHHHHHHHh-cCCeEEEEeCCC
Q 017714 240 DVTITAFSKIVGLSLKAAEIL----AKEGISAEVINLRSI--------------RPLDRSTINASVR-KTNRLVTVEEGF 300 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L----~~~Gi~v~vi~~~~i--------------~P~d~~~l~~~~~-~~~~ivvvEe~~ 300 (367)
-+++++.|+....+.++.+.+ ++.--+..| ...+. .|-..+.|.++.+ .+++|+|+--|-
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V-~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l 80 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEV-RWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHI 80 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeE-EEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCee
Confidence 478999999987776654443 333222233 22222 5777788877665 467899998888
Q ss_pred CCCchHHHHHHHHHH
Q 017714 301 PQHGVGAEICASVIE 315 (367)
Q Consensus 301 ~~GGlg~~v~~~l~~ 315 (367)
..|.-...+.+.+.+
T Consensus 81 ~~G~e~~di~~~v~~ 95 (127)
T cd03412 81 IPGEEYEKLKREVDA 95 (127)
T ss_pred ECcHHHHHHHHHHHH
Confidence 777666666666643
No 292
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=40.81 E-value=2.7e+02 Score=26.22 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=50.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEE-----EeCCCCCCchHHHHHHHHHH
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT-----VEEGFPQHGVGAEICASVIE 315 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivv-----vEe~~~~GGlg~~v~~~l~~ 315 (367)
-++++-+....+-..-++.|.+.||++++|--. .+....++.+++++ +.++....=.|......++.
T Consensus 111 ~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Ds--------a~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~ 182 (253)
T PRK06372 111 SVYILESRPMLEGIDMAKLLVKSGIDVVLLTDA--------SMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCAR 182 (253)
T ss_pred EEEEecCCCchHHHHHHHHHHHCCCCEEEEehh--------HHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHH
Confidence 345555555555567788899999999887333 23334566777665 33433333356666666654
Q ss_pred hccCCCCCCeEEEecCCCCC
Q 017714 316 ESFGYLDAPVERIAGADVPM 335 (367)
Q Consensus 316 ~~~~~~~~~v~~ig~~d~~~ 335 (367)
. ...|++.++....|.
T Consensus 183 ~----~~vPv~V~~~s~Kf~ 198 (253)
T PRK06372 183 Y----LKKPFYSLTISMKIE 198 (253)
T ss_pred H----cCCCEEEEeeccccC
Confidence 4 357787777666554
No 293
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=40.21 E-value=22 Score=28.78 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=27.0
Q ss_pred eCCcEEEEEechhH-HHHHHHHHHHHhcCCceEEEEee
Q 017714 237 EGKDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 237 ~g~di~Iia~G~~v-~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
...+++||++|... ..--+..+.|+++||.++++|-.
T Consensus 51 ~~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 51 LQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cCCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 34689999999653 33344556799999999998654
No 294
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=39.99 E-value=90 Score=26.32 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=26.9
Q ss_pred EEEechhH----HHHHHHHHHHHhcCC--ceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 243 ITAFSKIV----GLSLKAAEILAKEGI--SAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 243 Iia~G~~v----~~al~Aa~~L~~~Gi--~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
|+++|+.. .....+++.|+++.. .+.++|..+. + .+.+...++..+++|+|+-
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~-~--~~l~~~~~~~~d~viiVDA 60 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR-G--IHLAYELLDGYDTLILVDA 60 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC-H--HHHHHHHHhcCCEEEEEEe
Confidence 45555544 234456666665432 3666766654 2 2222233445566666655
No 295
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=39.72 E-value=84 Score=26.72 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=35.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC--eEEEEeC
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVEE 298 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~--~ivvvEe 298 (367)
++|+|=|..-....++++.|++.|+.+-+|-+.. .+.+.|.+.+.+.. ++..+.|
T Consensus 107 iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~d 163 (164)
T cd01482 107 VILITDGKSQDDVELPARVLRNLGVNVFAVGVKD---ADESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc---CCHHHHHHHhCCCchheEEEcCC
Confidence 3444555443345678889999998877775543 56778887777643 5555543
No 296
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=38.98 E-value=2e+02 Score=22.90 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=0.0
Q ss_pred cEEEEEec--hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhc
Q 017714 240 DVTITAFS--KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES 317 (367)
Q Consensus 240 di~Iia~G--~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~ 317 (367)
++++++.| +..-.+.+..+.++++|+++++.-.+. ..+.+...+.+.+++--.-.. .-..+.+.....
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~------~e~~~~~~~~Dvill~PQv~~---~~~~i~~~~~~~- 71 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAY------GSHYDMIPDYDLVILAPQMAS---YYDELKKDTDRL- 71 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeH------HHHHHhccCCCEEEEcChHHH---HHHHHHHHhhhc-
Q ss_pred cCCCCCCeEEEecCCCCCCCHHHHHHHh--CCCHHHHHHHHHHH
Q 017714 318 FGYLDAPVERIAGADVPMPYAANLERMA--VPQVLCFLYDSSID 359 (367)
Q Consensus 318 ~~~~~~~v~~ig~~d~~~~~~~~l~~~~--~l~~~~I~~~~i~~ 359 (367)
..|+..|-..+ |. .+|.+.|.+. +..
T Consensus 72 ----~ipv~~I~~~~-----------Yg~~~~dg~~vl~~-~~~ 99 (99)
T cd05565 72 ----GIKLVTTTGKQ-----------YIELTRDPDGALKF-VLN 99 (99)
T ss_pred ----CCCEEEeCHHH-----------HhHHhCCHHHHHHH-HhC
No 297
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=38.57 E-value=82 Score=27.10 Aligned_cols=57 Identities=21% Similarity=0.141 Sum_probs=32.9
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhcC-CceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 240 DVTITAFSKIV----GLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 240 di~Iia~G~~v----~~al~Aa~~L~~~G-i~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
+++|+++|+.. .....+++.|++.. -+++++|..+ -|++.-.+.+. .+.+++|+||-
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~~~i~~-~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDIVAIRE-LRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHHHHHHh-cCCCEEEEEEC
Confidence 35778888766 24456677776542 2578888887 34433222211 13467777774
No 298
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=38.21 E-value=71 Score=27.14 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=37.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
+|++++|+.-+..+... .+..|.++|..+.+.+-++. .+.+.+++.+-|++.--
T Consensus 27 ~gk~v~VvGrs~~vG~p--la~lL~~~gatV~~~~~~t~------~l~~~v~~ADIVvsAtg 80 (140)
T cd05212 27 DGKKVLVVGRSGIVGAP--LQCLLQRDGATVYSCDWKTI------QLQSKVHDADVVVVGSP 80 (140)
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHCCCEEEEeCCCCc------CHHHHHhhCCEEEEecC
Confidence 56778887777776655 45577788988888886652 35567777876665444
No 299
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=37.86 E-value=1.2e+02 Score=26.31 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=37.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHH--HHHHhcCC
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI--NASVRKTN 291 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l--~~~~~~~~ 291 (367)
+++++.|..-..++-++..|.++|++|.|+-+.-..+++.+.- .+.+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 5677788888999999999999999999976665566666642 23455554
No 300
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=37.73 E-value=1.6e+02 Score=29.21 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=36.5
Q ss_pred ccccEEEEeCC-CCCCCCCCC-chh---HHH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHcC---CCcEEEec
Q 017714 142 ISVPIVFRGPN-GAAAGVGAQ-HSH---CYA-AWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFLE 205 (367)
Q Consensus 142 ~~~pvv~~~~~-G~~~g~G~t-H~~---~~~-a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~---~~Pv~ir~ 205 (367)
.++|+++++.+ +. +.+.+ ..+ ... .....+|++.| .=.|..++..++..|.+. ++|++|-.
T Consensus 187 ~~lPvvfvveNN~~--aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lIe~ 256 (362)
T PLN02269 187 WDLPVIFVCENNHY--GMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVLEM 256 (362)
T ss_pred cCcCEEEEEeCCCE--eccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 68999998764 42 22222 111 111 11234777654 777788888888877642 78999854
No 301
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=37.59 E-value=62 Score=27.43 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEec----
Q 017714 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAG---- 330 (367)
Q Consensus 255 ~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~---- 330 (367)
.|++.|++.|++.+ -+.-+++..+.+. ..+.||++++++. +.+.+.... ...++..++-
T Consensus 48 ~a~~~l~~~Gid~~---~h~s~~lt~~~~~----~~DlIl~M~~~~~-----~~l~~~~p~-----~~~k~~~l~~~~~~ 110 (144)
T PRK11391 48 TAADVAANHGVSLE---GHAGRKLTAEMAR----NYDLILAMESEHI-----AQVTAIAPE-----VRGKTMLFGQWLEQ 110 (144)
T ss_pred HHHHHHHHcCCCcC---CCccCcCCHHHHh----hCCEEEECCHHHH-----HHHHHHCCC-----CcCeEEehhHhCCC
Confidence 56677888898853 2445677766543 5789999987542 222222110 1223433321
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 017714 331 ADVPMPYAANLERMAVPQVLCFLYDSSIDGCYK 363 (367)
Q Consensus 331 ~d~~~~~~~~l~~~~~l~~~~I~~~~i~~~l~~ 363 (367)
.+.+-|++..++.+. -..+.|.++ +++++++
T Consensus 111 ~~I~DPy~~~~~~f~-~~~~~I~~~-i~~ll~~ 141 (144)
T PRK11391 111 KEIPDPYRKSQDAFE-HVYGMLERA-SQEWAKR 141 (144)
T ss_pred CCCCCCccCCHHHHH-HHHHHHHHH-HHHHHHH
Confidence 122235544344333 356777777 7777764
No 302
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=37.44 E-value=1.2e+02 Score=24.52 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=21.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 239 ~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
++++|+.-|.. |.++.+.+++.|+++-+|+-.
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEEG
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccCc
Confidence 35777777776 555555667779888777653
No 303
>PRK06756 flavodoxin; Provisional
Probab=37.39 E-value=2.4e+02 Score=23.45 Aligned_cols=81 Identities=6% Similarity=0.034 Sum_probs=41.6
Q ss_pred echhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhc-cCCCCCC
Q 017714 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES-FGYLDAP 324 (367)
Q Consensus 246 ~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~-~~~~~~~ 324 (367)
+|++-..|...++.|++.|+++.++|+....+ . ..+.+++.|++.=-.+-.|-+-..+..++.+.. ......+
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~--~----~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~ 85 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIMDSPE--A----SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKK 85 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehhccCC--H----HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCE
Confidence 45555666666777888899999888765321 1 123455555543322222334444555554321 0111234
Q ss_pred eEEEecCC
Q 017714 325 VERIAGAD 332 (367)
Q Consensus 325 v~~ig~~d 332 (367)
+..+|.-+
T Consensus 86 ~~~fgt~~ 93 (148)
T PRK06756 86 AAVFGSCD 93 (148)
T ss_pred EEEEeCCC
Confidence 55565544
No 304
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=37.15 E-value=1.4e+02 Score=26.59 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEeeecCCC----------CHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHH
Q 017714 251 GLSLKAAEILAKEGISAEVINLRSIRPL----------DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~vi~~~~i~P~----------d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
..+..+++.|+++|.+++++|+..+.+- +.+.+.+.++..+.+|++=.-+ .|++...+..++
T Consensus 18 ~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~pg~LKn~i 89 (191)
T PRK10569 18 ALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY-KASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-CCCCCHHHHHHH
Confidence 3444556678888999999998865431 2224556677788777766644 477777666665
No 305
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=36.93 E-value=76 Score=26.45 Aligned_cols=43 Identities=28% Similarity=0.209 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (367)
-..+..|.+|.+.|+++||..+.+|+.. .|.+.+.+.+.++.+
T Consensus 7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 7 SPSCTSCRKAKAWLEEHDIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 3566788899999999999999999864 788888887777765
No 306
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=36.81 E-value=82 Score=26.65 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=26.3
Q ss_pred EEEEechhHH----HHHHHHHHHHhcCC--ceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 242 TITAFSKIVG----LSLKAAEILAKEGI--SAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 242 ~Iia~G~~v~----~al~Aa~~L~~~Gi--~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
+|+++|+... ....+++.|++... .+.++|.-+. |++...+.+. .+.+++|++|-
T Consensus 2 lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~~~~~~~-~~~d~viivDA 62 (146)
T TIGR00142 2 VLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENFTVAIRE-LRPTHILIVDA 62 (146)
T ss_pred EEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHHHHHHHh-cCCCEEEEEEC
Confidence 4666666552 34455566655422 3666666664 4333221111 13455655554
No 307
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=36.35 E-value=54 Score=33.29 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=69.7
Q ss_pred chhhHHHHHHHHHHHhccCCee--EEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchh-H
Q 017714 89 TPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-C 165 (367)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~p--~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~-~ 165 (367)
.+--||++.-+|-|.|..-.+| +..|..+..++. ...+...++ -.+|+|+...--+....|.-..| .
T Consensus 134 LPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNv-vtp~ADAla---------Dg~PlVvftGQVptsaIGtDAFQEa 203 (675)
T KOG4166|consen 134 LPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNV-VTPLADALA---------DGVPLVVFTGQVPTSAIGTDAFQEA 203 (675)
T ss_pred ccccccccchhhhhhhhhcCCCcEEEEecCCCcccc-cchhhHHhh---------cCCcEEEEecccchhhcccchhccC
Confidence 4668999999999999996666 334555544332 233322222 47898876421122223433223 2
Q ss_pred HH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHc-----CCCcEEEeccc
Q 017714 166 YA-AWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENE 207 (367)
Q Consensus 166 ~~-a~~~~iP~~~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~~ 207 (367)
+. .+-|++--|.|+. .|.+|+-.-+++|++ .++||.+-.+|
T Consensus 204 diVgisRScTKwNvmV-kdVedlPrrI~EAFeiATSGRPGPVLVDlPK 250 (675)
T KOG4166|consen 204 DIVGISRSCTKWNVMV-KDVEDLPRRIEEAFEIATSGRPGPVLVDLPK 250 (675)
T ss_pred Ceeeeeeccceeheee-ecHHHhhHHHHHHhhhhccCCCCCeEeeCcH
Confidence 33 6788888887765 688999999999987 37899997765
No 308
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=36.31 E-value=95 Score=29.63 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=38.1
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeee----------cCCCCHHHHHHHHhcCCeEEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS----------IRPLDRSTINASVRKTNRLVT 295 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~----------i~P~d~~~l~~~~~~~~~ivv 295 (367)
.|+.+.|+++|.+-.. .++.|...|.++.+++-.. ..+++.+.+.+.+++.+.|+.
T Consensus 150 ~gk~v~IiG~G~iG~a---vA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMT---IARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCEEEEEcChHHHHH---HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 4678999999996554 5556777788888887542 234555556667777775443
No 309
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=36.10 E-value=81 Score=26.97 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=34.9
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhcC----CceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 239 KDVTITAFSKIVG----LSLKAAEILAKEG----ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 239 ~di~Iia~G~~v~----~al~Aa~~L~~~G----i~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
++++|+++|+... ....+++.|++.+ -+++++|..+.-|-....+. ...+.+++|++|-
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA 69 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDI 69 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEc
Confidence 4678888888762 4556777776432 24788887764331111111 2356677777775
No 310
>PRK06703 flavodoxin; Provisional
Probab=35.64 E-value=1.1e+02 Score=25.60 Aligned_cols=64 Identities=5% Similarity=-0.007 Sum_probs=34.4
Q ss_pred EEEechhH----HHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHH
Q 017714 243 ITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 243 Iia~G~~v----~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
+|.|+++. ..|...++.|++.|+++.+.++....+ + .+.+.+.|++.=-.+..|-+-..+..++
T Consensus 5 ~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 5 LIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDA---E----ELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCH---H----HHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 44455444 444455566767799999998876432 1 1345665555443222343444444444
No 311
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=35.60 E-value=62 Score=22.45 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEeeec
Q 017714 248 KIVGLSLKAAEILAKEGISAEVINLRSI 275 (367)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~v~vi~~~~i 275 (367)
.....+..|.+.|++.|++.+.+|+..-
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc
Confidence 5667888999999999999999999874
No 312
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=34.66 E-value=1.9e+02 Score=28.30 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=33.0
Q ss_pred ccccEEEEeC-CCCCCCCCCCc---hhHHH-HHH--hcCCCcEEEeeCCHHHHHHHHHH----hHcCCCcEEEec
Q 017714 142 ISVPIVFRGP-NGAAAGVGAQH---SHCYA-AWY--ASVPGLKVLSPYSSEDARGLLKA----AIRDPDPVVFLE 205 (367)
Q Consensus 142 ~~~pvv~~~~-~G~~~g~G~tH---~~~~~-a~~--~~iP~~~V~~P~d~~e~~~~~~~----a~~~~~Pv~ir~ 205 (367)
.++|+++++. ++...+. +++ ...+. ... -.+|++.| .=.|..+++..++. +.+.++|++|-.
T Consensus 184 ~~LPvifvv~NN~~~i~~-~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 184 WKLPIIFVVENNQWAIGM-AHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAVREVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred cCCCEEEEEEeCCeeeec-chhheeCCccHHHHHHhCCCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5899999875 3422221 111 11122 222 25777766 44566555544444 445578999853
No 313
>PRK12753 transketolase; Reviewed
Probab=34.61 E-value=2.7e+02 Score=29.97 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=36.6
Q ss_pred cccc-EEEEeC-CCCCCCCCCCc---hhHHHHHHhcCCCcEEEeeC---CHHHHHHHHHHhHcC-CCcEEEec
Q 017714 142 ISVP-IVFRGP-NGAAAGVGAQH---SHCYAAWYASVPGLKVLSPY---SSEDARGLLKAAIRD-PDPVVFLE 205 (367)
Q Consensus 142 ~~~p-vv~~~~-~G~~~g~G~tH---~~~~~a~~~~iP~~~V~~P~---d~~e~~~~~~~a~~~-~~Pv~ir~ 205 (367)
.++| ++++.. ++.+. +|+++ .......+++. ||.++.+. |..++.++++.|.+. ++|++|..
T Consensus 173 ~kL~nLi~ivd~N~~~i-~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~ 243 (663)
T PRK12753 173 LGLGKLIGFYDHNGISI-DGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIIC 243 (663)
T ss_pred HCCCCEEEEEECCCCcC-CCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 5886 555543 34321 23333 22233677887 89888544 455666666666654 78999864
No 314
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=34.59 E-value=1.3e+02 Score=31.50 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=62.1
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..+- +=-..++.|.|++++. -++++++..- .|.+-+.++..+.+.. .++|++++.- + ++..
T Consensus 420 ~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~--------~~l~~~ivv~NN~~yg~ 491 (569)
T PRK08327 420 PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAER--------YGLPVLVVVFNNGGWLA 491 (569)
T ss_pred CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHH--------hCCCEEEEEEeCccccc
Confidence 677886542 3334566777777764 4666666432 2323233443333433 5788777653 2 2211
Q ss_pred ---------CCC------CC----c-hhHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHcC----CCcEEEe
Q 017714 157 ---------GVG------AQ----H-SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFL 204 (367)
Q Consensus 157 ---------g~G------~t----H-~~~~-~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~----~~Pv~ir 204 (367)
+.| .. . ...+ ..+..++ |.....-.+++|+..+++++++. ++|++|-
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lie 563 (569)
T PRK08327 492 VKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVLD 563 (569)
T ss_pred chhHHhhhCcccccccccccccccCCCCCCHHHHHHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 001 01 0 1112 2455544 44455567999999999999875 6799884
No 315
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=34.53 E-value=1.1e+02 Score=29.41 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=37.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeec----------CCCCHHHHHHHHhcCCeEEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI----------RPLDRSTINASVRKTNRLVT 295 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i----------~P~d~~~l~~~~~~~~~ivv 295 (367)
.+++++|+++|.+... ++..|+..|.++.++|-+.- ++.+.+.+.+.+++.+.|+.
T Consensus 151 ~g~kvlViG~G~iG~~---~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT---LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHHH---HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEE
Confidence 4788999999985544 55567777989998877632 22334455566677765553
No 316
>PRK07308 flavodoxin; Validated
Probab=34.49 E-value=1.9e+02 Score=24.04 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=42.4
Q ss_pred echhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCC-CCC
Q 017714 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYL-DAP 324 (367)
Q Consensus 246 ~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~-~~~ 324 (367)
+|++-..|...++.|++.|+.+.+.++....+ + .+.+.+.|++.=-.+-.|-+-..+..++.......+ ..+
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~---~----~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~ 84 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDVDECTTVDA---S----DFEDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKI 84 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEEEecccCCH---h----HhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCE
Confidence 34444555555667777899999988876532 2 234556555533333223355556655543210111 234
Q ss_pred eEEEecCCC
Q 017714 325 VERIAGADV 333 (367)
Q Consensus 325 v~~ig~~d~ 333 (367)
+..+|.-|.
T Consensus 85 ~~vfG~Gd~ 93 (146)
T PRK07308 85 YGVVGSGDT 93 (146)
T ss_pred EEEEeeCCC
Confidence 556666553
No 317
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.29 E-value=1e+02 Score=29.53 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=38.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivv 295 (367)
+|++++||..|..+..-+ +..|.++|..|++.+-++ ..+.+.+++.+-||+
T Consensus 157 ~Gk~vvVIGrs~~VG~pl--a~lL~~~gatVtv~~s~t------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPV--SKLLLQKNASVTILHSRS------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCEEEEECCCchhHHHH--HHHHHHCCCeEEEEeCCc------hhHHHHHhhCCEEEE
Confidence 688999999999887654 456777888888888765 345667777875554
No 318
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=33.83 E-value=1.8e+02 Score=27.64 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=33.5
Q ss_pred ccccEEEEeCC-CCCCCCCCCchh---HHH-HHHh--cCCCcEEEeeCCHHHHHHHHHHhHc----CCCcEEEec
Q 017714 142 ISVPIVFRGPN-GAAAGVGAQHSH---CYA-AWYA--SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (367)
Q Consensus 142 ~~~pvv~~~~~-G~~~g~G~tH~~---~~~-a~~~--~iP~~~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~ 205 (367)
.++|++++..+ +... ..+++.+ .+. .... .+|++.| .-.|+.++...++.|++ .++|++|-.
T Consensus 153 ~~lPvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 153 WKLPVIFVCENNGYAI-STPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAVYEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred hCCCEEEEEeeCCeec-cCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 58999998753 3211 1111111 112 2333 3554432 33467888887877763 578999853
No 319
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=33.63 E-value=1.1e+02 Score=25.91 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=34.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC--CeEEEEeC
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT--NRLVTVEE 298 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~--~~ivvvEe 298 (367)
++++|-|..-....+++..|++.|+.+-.|-+.. -|.+.|.+.+... +++..+++
T Consensus 107 iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~~ 163 (164)
T cd01472 107 LVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN---ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc---CCHHHHHHHHCCCchheEEeccC
Confidence 4455555433334455667888888776665443 3888888877666 45665543
No 320
>PTZ00062 glutaredoxin; Provisional
Probab=33.50 E-value=1.3e+02 Score=27.23 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=44.0
Q ss_pred eCCcEEEEEec----hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc-----CCeEEEEeCCCCCCchHH
Q 017714 237 EGKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGVGA 307 (367)
Q Consensus 237 ~g~di~Iia~G----~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-----~~~ivvvEe~~~~GGlg~ 307 (367)
..++++|++-| +.+..|.++.+.|++.|++...+|+.. |. .+.+.+++ +=..|.+... ..||+..
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~-~~~~~l~~~sg~~TvPqVfI~G~-~IGG~d~ 184 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DP-DLREELKVYSNWPTYPQLYVNGE-LIGGHDI 184 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CH-HHHHHHHHHhCCCCCCeEEECCE-EEcChHH
Confidence 35678999888 368899999999999999999999873 33 23333332 2234555553 3588643
No 321
>PRK09739 hypothetical protein; Provisional
Probab=33.37 E-value=1.5e+02 Score=26.23 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEEeeecC--C------------------CCHHHHHHHHhcCCeEEEEeCCCCCCchHHHH
Q 017714 250 VGLSLKAAEILAKEGISAEVINLRSIR--P------------------LDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309 (367)
Q Consensus 250 v~~al~Aa~~L~~~Gi~v~vi~~~~i~--P------------------~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v 309 (367)
...+...++.+++.|.+++++|+.-.. | -|.+.+.+.+..++.||+.=.-+ .+++-+.+
T Consensus 20 ~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y-~~~~Pa~L 98 (199)
T PRK09739 20 AKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLW-WYSFPAML 98 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchh-hhcchHHH
Confidence 334455666788889999999987542 1 12244556677788776655533 46777766
Q ss_pred HHHH
Q 017714 310 CASV 313 (367)
Q Consensus 310 ~~~l 313 (367)
...+
T Consensus 99 K~~i 102 (199)
T PRK09739 99 KGYI 102 (199)
T ss_pred HHHH
Confidence 6655
No 322
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=33.20 E-value=3.1e+02 Score=26.48 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEE-----EeCCCCCCchHHHHHHHHHHhccCCC
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT-----VEEGFPQHGVGAEICASVIEESFGYL 321 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivv-----vEe~~~~GGlg~~v~~~l~~~~~~~~ 321 (367)
+....+-..-+++|.+.||++++|--.. +-...++.+.+++ ++++...+-.|......++.. .
T Consensus 154 srP~~~G~~~a~~L~~~GI~vtlI~Dsa--------v~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~----~ 221 (310)
T PRK08535 154 TRPRNQGHITAKELAEYGIPVTLIVDSA--------VRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHE----A 221 (310)
T ss_pred CCchhhHHHHHHHHHHCCCCEEEEehhH--------HHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHH----h
Confidence 3334444556778889999999984333 3334556676654 233333333577777766654 2
Q ss_pred CCCeEEEecCCCC
Q 017714 322 DAPVERIAGADVP 334 (367)
Q Consensus 322 ~~~v~~ig~~d~~ 334 (367)
..|++.++-...|
T Consensus 222 ~vPv~V~a~~~K~ 234 (310)
T PRK08535 222 RVPFMVAAETYKF 234 (310)
T ss_pred CCCEEEeccccee
Confidence 5677655444333
No 323
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=32.68 E-value=1.9e+02 Score=25.83 Aligned_cols=59 Identities=24% Similarity=0.221 Sum_probs=38.0
Q ss_pred EEEEEechhH--HHHHHHHHHHHhcCCceEEEEeeecCCCCHHH---HHHHHhc--CCeEEEEeCCC
Q 017714 241 VTITAFSKIV--GLSLKAAEILAKEGISAEVINLRSIRPLDRST---INASVRK--TNRLVTVEEGF 300 (367)
Q Consensus 241 i~Iia~G~~v--~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~---l~~~~~~--~~~ivvvEe~~ 300 (367)
+++++.+... ....+++++|+++||.+.+|.+-+.-+=. +. +.+.+.+ ..+++++..+.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~-~~l~~~~~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNT-EKLTAFIDAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCH-HHHHHHHHHhcCCCCceEEEeCCCC
Confidence 4566666333 34557889999999999999998763322 33 3344432 24788877754
No 324
>TIGR03586 PseI pseudaminic acid synthase.
Probab=32.39 E-value=2.7e+02 Score=27.28 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=45.6
Q ss_pred EEEEEec-hhHHHHHHHHHHHHhcCC-ceEEEEeeecCCCCHHHH----HHHHh-cCCeEEEEeCCCCCCchHHHHHHH
Q 017714 241 VTITAFS-KIVGLSLKAAEILAKEGI-SAEVINLRSIRPLDRSTI----NASVR-KTNRLVTVEEGFPQHGVGAEICAS 312 (367)
Q Consensus 241 i~Iia~G-~~v~~al~Aa~~L~~~Gi-~v~vi~~~~i~P~d~~~l----~~~~~-~~~~ivvvEe~~~~GGlg~~v~~~ 312 (367)
=+|+++| +...+...|++.+++.|. ++.++++.+-+|-+.+.+ ...++ .++..|-+-+|. .|..-.++++
T Consensus 136 PvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDHt--~G~~~~~aAv 212 (327)
T TIGR03586 136 PIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDHT--LGILAPVAAV 212 (327)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeCCC--CchHHHHHHH
Confidence 4578888 567899999999998887 688888877778666532 12233 355444355786 3454444443
No 325
>PRK08105 flavodoxin; Provisional
Probab=32.33 E-value=51 Score=28.11 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=34.9
Q ss_pred EEEechhHHHHHHHHHH----HHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHH
Q 017714 243 ITAFSKIVGLSLKAAEI----LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAE 308 (367)
Q Consensus 243 Iia~G~~v~~al~Aa~~----L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~ 308 (367)
.|-||+....+.+.|+. |++.|+++.++++..+.++. ..+.+.+|++=..+-.|-+-..
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~-------~~~~~~vi~~~sT~G~Ge~p~~ 67 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQ-------PYQDELVLVVTSTTGQGDLPDS 67 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchh-------cccCCeEEEEECCCCCCCCChh
Confidence 45578877777766654 45569999999876543221 1234566666555544544333
No 326
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=32.23 E-value=3.2e+02 Score=28.43 Aligned_cols=142 Identities=8% Similarity=0.046 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechh--hHHHHHHHHHHHhcc-CCeeEEecccccH
Q 017714 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNF 119 (367)
Q Consensus 43 ~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GI--aE~~~vg~AaGlA~~-G~~p~~~~~~~~f 119 (367)
+-+.|.+.+.++.+.+ +..|.+.. .+. ...+.|.+|+..+- +=-..+..|.|++++ +.++++ +..=.-
T Consensus 361 ~~~~l~~~l~~~~~~i-i~~D~G~~--~~~-----~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~~~r~v~-i~GDG~ 431 (535)
T TIGR03394 361 IARAVNDRFARHGQMP-LAADIGDC--LFT-----AMDMDDAGLMAPGYYAGMGFGVPAGIGAQCTSGKRILT-LVGDGA 431 (535)
T ss_pred HHHHHHHHhCCCCCEE-EEEccCHH--HHH-----HHhcCCCcEECcCccchhhhHHHHHHHHHhCCCCCeEE-EEeChH
Confidence 4555666666554432 23354431 111 11122567776531 112334455666666 455544 443222
Q ss_pred HHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC---CCC-C----CchhHHHHHHhcCCCcEEEeeCCHHHHHH
Q 017714 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA---GVG-A----QHSHCYAAWYASVPGLKVLSPYSSEDARG 189 (367)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~---g~G-~----tH~~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (367)
.+.....|- .+.+ .++|++++.- + ++.. ... . .+...+.++-+++ |..-....++.|+..
T Consensus 432 f~m~~~EL~-Ta~r--------~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~ 501 (535)
T TIGR03394 432 FQMTGWELG-NCRR--------LGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAELAA 501 (535)
T ss_pred HHhHHHHHH-HHHH--------cCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHc-CCCceEeCCHHHHHH
Confidence 333333333 2333 5788777653 2 2221 000 0 1111112344444 555677888999999
Q ss_pred HHHHhHcCCC-cEEE
Q 017714 190 LLKAAIRDPD-PVVF 203 (367)
Q Consensus 190 ~~~~a~~~~~-Pv~i 203 (367)
+++.+++.++ |.+|
T Consensus 502 al~~a~~~~~~p~lI 516 (535)
T TIGR03394 502 ALDKAFATRGRFQLI 516 (535)
T ss_pred HHHHHHhcCCCeEEE
Confidence 9999998655 6666
No 327
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=32.17 E-value=2.3e+02 Score=26.27 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCcEEEee-eCCcEEEEEechhHHHHHHHHHHHHhcC--CceEEEE-eeec-CCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 229 IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEG--ISAEVIN-LRSI-RPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 229 ~Gk~~v~~-~g~di~Iia~G~~v~~al~Aa~~L~~~G--i~v~vi~-~~~i-~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
+|++.... .++.+++|+-|..+...+..++.+.++| .+|.++- .++- ..+..+.+.+...+ ....+++++.
T Consensus 97 ~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~ 172 (252)
T COG0543 97 LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGW 172 (252)
T ss_pred CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCC
Confidence 44444333 3455999999999999999999999888 6666654 3332 12444556555544 5566776554
No 328
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.11 E-value=47 Score=32.29 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhCCcEEEEec
Q 017714 40 REALNSALDEEMSADPKVFLMGE 62 (367)
Q Consensus 40 r~a~~~~L~~l~~~d~~vv~l~a 62 (367)
...|.++|...+++||||+++++
T Consensus 184 T~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 184 TLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHHHHHhhcCCCEEEEec
Confidence 45689999999999999999986
No 329
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=31.75 E-value=1.4e+02 Score=30.17 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=38.4
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc--CCeEEEEeCC
Q 017714 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK--TNRLVTVEEG 299 (367)
Q Consensus 239 ~di~Iia~G~-~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~--~~~ivvvEe~ 299 (367)
.|+.|+..+. ....|++.++.|+++|+.+++ +... +.+ .+.+. .+.+ ...++++.+.
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l-~k~~k-~A~~~~~~~viiiG~~ 385 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNF-HKQIK-QAGKKRAKACIILGDN 385 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCH-HHHHH-HHHHcCCCEEEEEech
Confidence 5678887775 557899999999999999987 4432 334 33344 4433 4577777763
No 330
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=31.68 E-value=1.3e+02 Score=26.54 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC-eEEEEeC
Q 017714 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEE 298 (367)
Q Consensus 253 al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~-~ivvvEe 298 (367)
..++++.++++||.+.+|-+-. +.+.|++.++.++ +...+++
T Consensus 125 ~~~~~~~l~~~~I~v~~IgiG~----~~~~L~~ia~~tgG~~~~~~~ 167 (183)
T cd01453 125 IYETIDKLKKENIRVSVIGLSA----EMHICKEICKATNGTYKVILD 167 (183)
T ss_pred HHHHHHHHHHcCcEEEEEEech----HHHHHHHHHHHhCCeeEeeCC
Confidence 3467888999999999988753 4456777888775 5666555
No 331
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=31.60 E-value=3.9e+02 Score=27.98 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=61.5
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccc-cHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-C-CCCC
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~-~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (367)
|.+|+..+- +=-..+..|.|++++. -++++++..= .|.+-+ ..+ ..+.. .++|++++.- + ++..
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~-~eL-~Ta~~--------~~l~i~~vV~NN~~y~~ 477 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTN-QEL-AILNI--------YKVPIKVVMLNNHSLGM 477 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccH-HHH-HHHHH--------hCCCeEEEEEeCCCchH
Confidence 788887632 2233566777777774 3566665432 233332 222 22332 4777776643 2 3221
Q ss_pred ----------CCCCC----chhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 157 ----------GVGAQ----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 157 ----------g~G~t----H~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+.+.. +.-.+..+-+++ |..-+.-.+++|+..++. ++..++|.+|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~-~~~~~~p~lIe 537 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLE-VITEDVPMLIE 537 (566)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHH-HhcCCCCEEEE
Confidence 01110 101123455555 777788899999999997 46678999984
No 332
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=31.51 E-value=1.2e+02 Score=27.50 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=38.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC--CeEEEEeCC
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT--NRLVTVEEG 299 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~--~~ivvvEe~ 299 (367)
++|++-|..-....++++.|++.|+.+-.|-+-. .|.+.|.+.+... ++++.+++.
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~~ 169 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR---ADEEELREIASEPLADHVFYVEDF 169 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCCH
Confidence 3556666444455677888999998877776654 6888888877653 367776664
No 333
>PRK09004 FMN-binding protein MioC; Provisional
Probab=30.99 E-value=2e+02 Score=24.37 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=44.0
Q ss_pred EEEechhHHHHHHHHHHH----HhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHH---HHHHHHH
Q 017714 243 ITAFSKIVGLSLKAAEIL----AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAE---ICASVIE 315 (367)
Q Consensus 243 Iia~G~~v~~al~Aa~~L----~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~---v~~~l~~ 315 (367)
.|-||++...+.+.|+.| ++.|.++.++++.. .+ .+.+.+.++++=..+-.|-+-.. +.+.|.+
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~-----~~----~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~ 75 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL-----LD----DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQE 75 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC-----HH----HhccCCeEEEEECCCCCCCCChhHHHHHHHHHh
Confidence 345888887777766554 45699999887532 22 23456667766665544544333 2233322
Q ss_pred hccCCCCCCeEEEecCCC
Q 017714 316 ESFGYLDAPVERIAGADV 333 (367)
Q Consensus 316 ~~~~~~~~~v~~ig~~d~ 333 (367)
.....-..++.-+|+-|.
T Consensus 76 ~~~~l~g~~~aVfGlGds 93 (146)
T PRK09004 76 QKPDLSQVRFAAIGIGSS 93 (146)
T ss_pred cCCCCCCCEEEEEeecCC
Confidence 211111234556666553
No 334
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=30.84 E-value=4.4e+02 Score=24.46 Aligned_cols=80 Identities=8% Similarity=-0.043 Sum_probs=41.0
Q ss_pred eecCCCCHHHHHHHHhcCCeEEEEeCCC---CCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHH-----
Q 017714 273 RSIRPLDRSTINASVRKTNRLVTVEEGF---PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERM----- 344 (367)
Q Consensus 273 ~~i~P~d~~~l~~~~~~~~~ivvvEe~~---~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~----- 344 (367)
...-+.+.+.+.+.++..+.++..-... ..-|++..+.++++- ..|+.. .+. ....+.+++.
T Consensus 239 ~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~------G~Pvi~--~~~--~~~~~~i~~~~~g~~ 308 (355)
T cd03799 239 TLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAM------GLPVIS--TDV--SGIPELVEDGETGLL 308 (355)
T ss_pred EECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHc------CCCEEe--cCC--CCcchhhhCCCceEE
Confidence 3445566777778888887444321110 014667888888752 345532 211 1111222211
Q ss_pred hC-CCHHHHHHHHHHHHhhh
Q 017714 345 AV-PQVLCFLYDSSIDGCYK 363 (367)
Q Consensus 345 ~~-l~~~~I~~~~i~~~l~~ 363 (367)
.. -|+++++++ +.+++.+
T Consensus 309 ~~~~~~~~l~~~-i~~~~~~ 327 (355)
T cd03799 309 VPPGDPEALADA-IERLLDD 327 (355)
T ss_pred eCCCCHHHHHHH-HHHHHhC
Confidence 11 167888888 7777643
No 335
>PLN02573 pyruvate decarboxylase
Probab=30.78 E-value=4.4e+02 Score=27.70 Aligned_cols=113 Identities=10% Similarity=-0.067 Sum_probs=60.9
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeC-CC-CCC-
Q 017714 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA- 156 (367)
Q Consensus 83 p~R~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~- 156 (367)
|.+|+..+- +=-..+..|.|++++- -++++++..-.-.+.....|- .+.. .++|++++.- ++ +..
T Consensus 418 ~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~-Ta~r--------~~lpvv~vV~NN~~yg~~ 488 (578)
T PLN02573 418 GCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVS-TMIR--------CGQKSIIFLINNGGYTIE 488 (578)
T ss_pred CCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHH-HHHH--------cCCCCEEEEEeCCceeEE
Confidence 456665442 1112345666766663 356665543222333333332 3433 5888777653 32 220
Q ss_pred --CC----CCCchhHHHHHHhcCC---C-cEEEeeCCHHHHHHHHHHhHc--CCCcEEEe
Q 017714 157 --GV----GAQHSHCYAAWYASVP---G-LKVLSPYSSEDARGLLKAAIR--DPDPVVFL 204 (367)
Q Consensus 157 --g~----G~tH~~~~~a~~~~iP---~-~~V~~P~d~~e~~~~~~~a~~--~~~Pv~ir 204 (367)
.. +..+.-.+.++-+.+- + +.-..-.++.|+..++++++. .++|.+|-
T Consensus 489 ~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lie 548 (578)
T PLN02573 489 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIE 548 (578)
T ss_pred EeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 00 1111111234555542 3 777888999999999999984 68899984
No 336
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=30.35 E-value=2.1e+02 Score=26.09 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHH
Q 017714 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (367)
Q Consensus 275 i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~ 314 (367)
+.+++.+.+.+.++.++.++. -... .|++..+.++++
T Consensus 261 ~g~~~~~~~~~~~~~~di~i~-~~~~--~~~~~~~~Ea~~ 297 (374)
T cd03801 261 LGFVPDEDLPALYAAADVFVL-PSLY--EGFGLVLLEAMA 297 (374)
T ss_pred EeccChhhHHHHHHhcCEEEe-cchh--ccccchHHHHHH
Confidence 345556667777877775443 2222 567777888775
No 337
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=30.29 E-value=1e+02 Score=27.97 Aligned_cols=57 Identities=23% Similarity=0.407 Sum_probs=39.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCC---------------HHHHHHHHhcCCeEEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD---------------RSTINASVRKTNRLVT 295 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d---------------~~~l~~~~~~~~~ivv 295 (367)
+|++++||.-+..+..=+. ..|.++|..|++.|..+++-|. ++.+.+.+++.+-||+
T Consensus 61 ~GK~vvVIGrS~iVGkPla--~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIs 132 (197)
T cd01079 61 YGKTITIINRSEVVGRPLA--ALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVIT 132 (197)
T ss_pred CCCEEEEECCCccchHHHH--HHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEE
Confidence 6788999999998887654 4677788888888754433322 2236677888875554
No 338
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=30.23 E-value=2.3e+02 Score=24.47 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEeeecCC--C--------CHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHH
Q 017714 250 VGLSLKAAEILAKEGISAEVINLRSIRP--L--------DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 250 v~~al~Aa~~L~~~Gi~v~vi~~~~i~P--~--------d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
...+..+++.++++|.+++++|+.-+.. + +.+.+.+.++..+.+|++=.-+ .+++...+..++
T Consensus 16 ~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~~sip~~LK~~i 88 (171)
T TIGR03567 16 SALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-KASYSGVLKALL 88 (171)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-cCCCCHHHHHHH
Confidence 3445556667877899999999875421 1 1134556666777766655533 477777777666
No 339
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=30.17 E-value=2.5e+02 Score=33.87 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=29.3
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEe
Q 017714 169 WYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (367)
Q Consensus 169 ~~~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 204 (367)
+-++. |+.-....+++|+..++.++.+.++|.+|-
T Consensus 851 lA~a~-G~~~~rV~~~~eL~~aL~~a~~~~~p~lIE 885 (1655)
T PLN02980 851 LCLAH-GVRHLHVGTKSELEDALFTSQVEQMDCVVE 885 (1655)
T ss_pred HHHHc-CCceeecCCHHHHHHHHHHhhccCCCEEEE
Confidence 33334 788888999999999999999999999984
No 340
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=29.76 E-value=3e+02 Score=22.24 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=56.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCC--HHHHHHHHhc---CCeEEEEeCCCCCCchHHHHHHHHH
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD--RSTINASVRK---TNRLVTVEEGFPQHGVGAEICASVI 314 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d--~~~l~~~~~~---~~~ivvvEe~~~~GGlg~~v~~~l~ 314 (367)
+++|++.|.......++++.+-.+.-++..+++..=..++ .+.+.+.+++ .+.++++=|= .||=--.++..+.
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl--~GGSp~n~~~~~~ 79 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDL--FGGSPNNAAARLS 79 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeC--CCCCHHHHHHHHH
Confidence 5789999999999999999886544456666554211111 1234444444 3445554442 2443233333333
Q ss_pred HhccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 017714 315 EESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDG 360 (367)
Q Consensus 315 ~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~~~~i~~~ 360 (367)
.+ ..++..+..-+.+.-..-......+.+.+++++. +.+.
T Consensus 80 ~~-----~~~~~visG~nlpmlle~~~~~~~~~~~~e~~~~-~~~~ 119 (122)
T cd00006 80 ME-----HPPVEVIAGVNLPMLLEAARARELGLSLDELVEN-ALEA 119 (122)
T ss_pred hc-----CCCEEEEEccCHHHHHHHHHccccCCCHHHHHHH-HHHh
Confidence 22 1345555554422111111111123567777777 5543
No 341
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=29.62 E-value=4e+02 Score=23.60 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=56.3
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCC---e--EEEEeCCCCCCc-hHHHHH
Q 017714 238 GKDVTITAFSKIVG-LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---R--LVTVEEGFPQHG-VGAEIC 310 (367)
Q Consensus 238 g~di~Iia~G~~v~-~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~---~--ivvvEe~~~~GG-lg~~v~ 310 (367)
|+++.|+.-|..+. .|.-|..+...++|.=+=|++.|+--.-+|.|.++++... + ++++-- +..|| +.++|.
T Consensus 83 GKRvIiiGGGAqVsqVA~GAIsEADRHNiRGERISvDTiPlVGEE~laEAVkAV~rLpRv~iLVLAG-slMGGkIteaVk 161 (218)
T COG1707 83 GKRVIIIGGGAQVSQVARGAISEADRHNIRGERISVDTIPLVGEEELAEAVKAVARLPRVGILVLAG-SLMGGKITEAVK 161 (218)
T ss_pred CcEEEEECCchhHHHHHHhhcchhhhcccccceeeeecccccChHHHHHHHHHHhccccceeEEEec-ccccchHHHHHH
Confidence 77889999998775 4555666666678888889999987778888877766432 2 455444 34444 333333
Q ss_pred HHHHHhccCCCCCCeEEEecCC
Q 017714 311 ASVIEESFGYLDAPVERIAGAD 332 (367)
Q Consensus 311 ~~l~~~~~~~~~~~v~~ig~~d 332 (367)
+ +.++ ...|+..+....
T Consensus 162 ~-lr~~----hgI~VISL~M~G 178 (218)
T COG1707 162 E-LREE----HGIPVISLNMFG 178 (218)
T ss_pred H-HHHh----cCCeEEEeccCC
Confidence 2 2222 245676666543
No 342
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.43 E-value=3.7e+02 Score=27.50 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHH-HHHhcCCCcEE
Q 017714 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYA-AWYASVPGLKV 178 (367)
Q Consensus 118 ~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~-a~~~~iP~~~V 178 (367)
.|.--.+|.+..-++-...-..-..+.|.|+...+ ..|.|-|.+-.=. .++.. -|-++
T Consensus 73 ~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvG--LQGsGKTTt~~KLA~~lkk-~~~kv 131 (451)
T COG0541 73 QFIKIVYEELVKLLGGENSELNLAKKPPTVILMVG--LQGSGKTTTAGKLAKYLKK-KGKKV 131 (451)
T ss_pred HHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEe--ccCCChHhHHHHHHHHHHH-cCCce
Confidence 35555667765544410000000123466555442 2344666533323 45555 44433
No 343
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.38 E-value=1.8e+02 Score=29.24 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=36.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee-------------ecCCCCHHHHHHH-HhcCCeEEEE
Q 017714 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR-------------SIRPLDRSTINAS-VRKTNRLVTV 296 (367)
Q Consensus 238 g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~-------------~i~P~d~~~l~~~-~~~~~~ivvv 296 (367)
..+++|+++|..... .+++|+++|+++.||+.. .=.|-|++.++++ +++.+.+++.
T Consensus 240 k~HvII~G~g~lg~~---v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAIN---TYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHH---HHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 356889999987655 556788889999998743 1234455555442 4466666554
No 344
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=29.33 E-value=3.1e+02 Score=29.44 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=36.2
Q ss_pred cccc-EEEEeC-CCCCCCCCCCch---hHHHHHHhcCCCcEEEee---CCHHHHHHHHHHhHcC-CCcEEEec
Q 017714 142 ISVP-IVFRGP-NGAAAGVGAQHS---HCYAAWYASVPGLKVLSP---YSSEDARGLLKAAIRD-PDPVVFLE 205 (367)
Q Consensus 142 ~~~p-vv~~~~-~G~~~g~G~tH~---~~~~a~~~~iP~~~V~~P---~d~~e~~~~~~~a~~~-~~Pv~ir~ 205 (367)
.++| ++++.. ++... +|++.. ......+++. ||.++.- .|..++..+++.+-+. ++|++|..
T Consensus 169 ~~L~nLi~ivd~N~~~i-~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~ 239 (653)
T TIGR00232 169 LKLGKLIVLYDSNRISI-DGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEV 239 (653)
T ss_pred hCCCcEEEEEeCCCeee-ccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 6888 554443 33221 233321 2233677777 8888865 3556666666666555 47999864
No 345
>PRK05568 flavodoxin; Provisional
Probab=29.27 E-value=1.3e+02 Score=24.84 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
|++-..|...++.+++.|++++++++....+ . .+.+++.|++.=.
T Consensus 13 GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~---~----~~~~~d~iilgsp 57 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGAEVKLLNVSEASV---D----DVKGADVVALGSP 57 (142)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEECCCCCH---H----HHHhCCEEEEECC
Confidence 3344444445556666789999998876432 1 2345665555433
No 346
>PRK11761 cysM cysteine synthase B; Provisional
Probab=29.16 E-value=3.9e+02 Score=25.38 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=45.4
Q ss_pred CCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEe-eeCCcEEEEEechhHH
Q 017714 173 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIE-REGKDVTITAFSKIVG 251 (367)
Q Consensus 173 iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~-~~g~di~Iia~G~~v~ 251 (367)
-|+.+|+..++.+-...+-..|-...-|+.|..++.. + ..|.+.+ .-|+++.++..+....
T Consensus 61 ~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~-----------~-------~~k~~~~~~~GA~v~~~~~~~~~~ 122 (296)
T PRK11761 61 KPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENM-----------S-------QERRAAMRAYGAELILVPKEQGME 122 (296)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCC-----------C-------HHHHHHHHHcCCEEEEeCCCCChH
Confidence 3677899999998888777777777788888754320 0 0111112 2366666665433456
Q ss_pred HHHHHHHHHHhc
Q 017714 252 LSLKAAEILAKE 263 (367)
Q Consensus 252 ~al~Aa~~L~~~ 263 (367)
.+.+.+++|.++
T Consensus 123 ~~~~~a~~l~~~ 134 (296)
T PRK11761 123 GARDLALQMQAE 134 (296)
T ss_pred HHHHHHHHHHhc
Confidence 676777777665
No 347
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=29.12 E-value=74 Score=27.72 Aligned_cols=55 Identities=25% Similarity=0.428 Sum_probs=35.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
+|++++||.-+..+..-+. ..|.++|..|++.+-.| +.+.+.+++.+-|| .--+.
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla--~lL~~~~atVt~~h~~T------~~l~~~~~~ADIVV-sa~G~ 89 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLA--MLLLNKGATVTICHSKT------KNLQEITRRADIVV-SAVGK 89 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHH--HHHHHTT-EEEEE-TTS------SSHHHHHTTSSEEE-E-SSS
T ss_pred CCCEEEEECCcCCCChHHH--HHHHhCCCeEEeccCCC------CcccceeeeccEEe-eeecc
Confidence 5678999999988887654 46888888888887777 44566777777544 44443
No 348
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=29.11 E-value=94 Score=27.00 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=29.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~v 269 (367)
.+.+++++++|-.....+..++.|+++|.+|.+
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~ 88 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVRY 88 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceEE
Confidence 678999999999999999999999999865544
No 349
>PRK05569 flavodoxin; Provisional
Probab=29.03 E-value=1.3e+02 Score=24.74 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=26.4
Q ss_pred echhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 246 ~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
+|++-..|...++.+++.|++++++++... +.+ .+.+++.|++.=.
T Consensus 12 tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~---~~~----~~~~~d~iilgsP 57 (141)
T PRK05569 12 GGNVEVLANTIADGAKEAGAEVTIKHVADA---KVE----DVLEADAVAFGSP 57 (141)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEECCcC---CHH----HHhhCCEEEEECC
Confidence 344455555556667667888877776543 322 2335666665443
No 350
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=28.62 E-value=1.2e+02 Score=28.91 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=26.6
Q ss_pred EEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHH
Q 017714 242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284 (367)
Q Consensus 242 ~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~ 284 (367)
+|+..|..+.++++.++..++.|.++-++-+++..+.+.+.+.
T Consensus 77 vi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~ 119 (296)
T TIGR03249 77 VYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLY 119 (296)
T ss_pred EEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHH
Confidence 4455555566666666666666777766666666555555543
No 351
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=28.61 E-value=1.8e+02 Score=28.50 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=36.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCH--------HHHHHHHhcCCeEEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR--------STINASVRKTNRLVT 295 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~--------~~l~~~~~~~~~ivv 295 (367)
.|+.+.||++|++-+. .+..|+..|++|.+.+-+ -+..+. ..+.+++++.+.|++
T Consensus 15 kgKtVGIIG~GsIG~a---mA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~Eaak~ADVV~l 77 (335)
T PRK13403 15 QGKTVAVIGYGSQGHA---QAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVSEAVRTAQVVQM 77 (335)
T ss_pred CcCEEEEEeEcHHHHH---HHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHHHHHhcCCEEEE
Confidence 4677999999998874 345678889999888633 222221 136677777875544
No 352
>PHA03050 glutaredoxin; Provisional
Probab=28.44 E-value=2.7e+02 Score=22.30 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=41.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCC---ceEEEEeeecCCCCH---HHHHHHHhc-CCeEEEEeCCCCCCchHHHH
Q 017714 238 GKDVTITAFSKIVGLSLKAAEILAKEGI---SAEVINLRSIRPLDR---STINASVRK-TNRLVTVEEGFPQHGVGAEI 309 (367)
Q Consensus 238 g~di~Iia~G~~v~~al~Aa~~L~~~Gi---~v~vi~~~~i~P~d~---~~l~~~~~~-~~~ivvvEe~~~~GGlg~~v 309 (367)
..+++|++.-. ...|..|.+.|++.|+ +.+++|+.-..+ +. +.+.+...+ +=..|++.. ...||+....
T Consensus 12 ~~~V~vys~~~-CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g-~~iGG~ddl~ 87 (108)
T PHA03050 12 NNKVTIFVKFT-CPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGK-TSIGGYSDLL 87 (108)
T ss_pred cCCEEEEECCC-ChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECC-EEEeChHHHH
Confidence 45677777654 6677888889999898 788998874222 22 233333222 214555555 4468875533
No 353
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=28.29 E-value=1.6e+02 Score=29.16 Aligned_cols=57 Identities=28% Similarity=0.309 Sum_probs=38.0
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHH-hcCCeEEEEeC
Q 017714 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASV-RKTNRLVTVEE 298 (367)
Q Consensus 239 ~di~Iia~G~-~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~~~~~ivvvEe 298 (367)
.++.|++.+. ....+++.+.+|++.|+.|.+ +... +++ .+.+..+- .+...++++.+
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~-~~l-~k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG-RKL-KKQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 4788888775 557888999999999999976 3332 344 33343322 23567888765
No 354
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=27.95 E-value=5e+02 Score=26.99 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=57.0
Q ss_pred chhhHHHHHHHHHHHhccCC--eeE--EecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCC-CCCCCCCC-c
Q 017714 89 TPITEAGFTGIGVGAAYYGL--KPV--VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG-AAAGVGAQ-H 162 (367)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~--~p~--~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G-~~~g~G~t-H 162 (367)
-|-.||.|.-.|.+.|+.-. |-+ +++..+..++ +...+++.+ -.++||+++-.|- .+....|- +
T Consensus 61 qg~NEQgMAhaAiayaKq~~Rrr~~A~tsSiGPGA~N-----mvTaAalA~-----~NrlPvLllPgDvfA~R~PDPVLQ 130 (617)
T COG3962 61 QGHNEQGMAHAAIAYAKQHRRRRIYAVTSSIGPGAAN-----MVTAAALAH-----VNRLPVLLLPGDVFATRQPDPVLQ 130 (617)
T ss_pred hcccHhHHHHHHHHHHHHHhhceeeEEecccCCcHHH-----HHHHHHHHH-----hhcCceEeeccchhcccCCChHHH
Confidence 35699999999999999743 333 3333343332 223343322 2689999873331 11111111 1
Q ss_pred h------------hHHH---HHHhcCCCcEEEeeCCHHHHHHHHHHhHc------CCCcEEEeccc
Q 017714 163 S------------HCYA---AWYASVPGLKVLSPYSSEDARGLLKAAIR------DPDPVVFLENE 207 (367)
Q Consensus 163 ~------------~~~~---a~~~~iP~~~V~~P~d~~e~~~~~~~a~~------~~~Pv~ir~~~ 207 (367)
+ .++- .+|..| ..|+++..++..|++ .-+|+-+..+.
T Consensus 131 Q~E~~~d~~it~NDcfrPVSRYfDRI--------tRPEQl~sal~rA~~VmTDPA~~GpvTl~l~Q 188 (617)
T COG3962 131 QLEQFGDGTITTNDCFRPVSRYFDRI--------TRPEQLMSALPRAMRVMTDPADCGPVTLALCQ 188 (617)
T ss_pred hhhccccCceecccccccHHHHhhhc--------CCHHHHHHHHHHHHHHhCChhhcCceEEEech
Confidence 1 1111 233333 468999999999987 24799887543
No 355
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=27.80 E-value=4.3e+02 Score=24.34 Aligned_cols=43 Identities=2% Similarity=-0.018 Sum_probs=24.0
Q ss_pred eeecCCCCHHHHHHHHhcCCeEEEEeCCCC--CCchHHHHHHHHH
Q 017714 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFP--QHGVGAEICASVI 314 (367)
Q Consensus 272 ~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~--~GGlg~~v~~~l~ 314 (367)
+..+-.++.+.+.+..+.++.++..-.... .+++...+.++++
T Consensus 277 v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~ 321 (394)
T cd03794 277 VTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA 321 (394)
T ss_pred EEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHH
Confidence 344446777777788887775444322221 2334455667664
No 356
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=27.49 E-value=1.7e+02 Score=21.01 Aligned_cols=37 Identities=14% Similarity=0.376 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 255 ~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
...+.|+++|++++.++- |++ .+. . +...+|+++...
T Consensus 9 a~~~~L~~~g~~v~~~~~----~~~--~l~-~--~~~tll~i~~~~ 45 (70)
T PF14258_consen 9 ALYQLLEEQGVKVERWRK----PYE--ALE-A--DDGTLLVIGPDL 45 (70)
T ss_pred HHHHHHHHCCCeeEEecc----cHH--HhC-C--CCCEEEEEeCCC
Confidence 356678888988876543 433 332 1 444677777764
No 357
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=27.27 E-value=1.4e+02 Score=23.90 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=34.1
Q ss_pred EEEechhHHHHHHHHH-HHHhcCCceEEEEeeecCC--CCHHHHHHHHhc
Q 017714 243 ITAFSKIVGLSLKAAE-ILAKEGISAEVINLRSIRP--LDRSTINASVRK 289 (367)
Q Consensus 243 Iia~G~~v~~al~Aa~-~L~~~Gi~v~vi~~~~i~P--~d~~~l~~~~~~ 289 (367)
+|-.|+.+..-++-.+ .+.+.|+.+.+||+.-..| +|.+.+.+.++.
T Consensus 53 vIll~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 53 LYLVSPQTKMYFKQFEEAGAKVGKPVVQIPPQAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred EEEEChHHHHHHHHHHHHhhhcCCCEEEeCHHHcCCCccCHHHHHHHHHh
Confidence 3445666666555555 4556799999999999996 888888776653
No 358
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=27.11 E-value=72 Score=26.27 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.2
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhcCCceEEEEeee
Q 017714 240 DVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRS 274 (367)
Q Consensus 240 di~Iia~G~~-v~~al~Aa~~L~~~Gi~v~vi~~~~ 274 (367)
++++..+|+. ...+.+..+.|+++|.++.++=-++
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 5777788854 4568889999999999999885444
No 359
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=26.97 E-value=78 Score=25.00 Aligned_cols=35 Identities=20% Similarity=0.055 Sum_probs=22.7
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEE
Q 017714 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (367)
Q Consensus 236 ~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi 270 (367)
.++..+++++.+.....+..++..|++.|+++.++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEe
Confidence 34566777765543345667888898889875443
No 360
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=26.83 E-value=3.5e+02 Score=28.88 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=22.8
Q ss_pred HhcCCCcEEEeeCCHH---HHHHHHHHhHcCCCcEEEec
Q 017714 170 YASVPGLKVLSPYSSE---DARGLLKAAIRDPDPVVFLE 205 (367)
Q Consensus 170 ~~~iP~~~V~~P~d~~---e~~~~~~~a~~~~~Pv~ir~ 205 (367)
|..+ ||.++.|.|.. ++..+++.+-+.++|++|..
T Consensus 234 f~~~-G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~ 271 (617)
T TIGR00204 234 FEEL-GFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHI 271 (617)
T ss_pred HHHc-CCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 4445 78777676665 55555555555678999864
No 361
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=26.61 E-value=81 Score=25.82 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=26.5
Q ss_pred eeeCCcEEEEEech--hHHHHHHHHHHHHhcCCceEEEEeee
Q 017714 235 EREGKDVTITAFSK--IVGLSLKAAEILAKEGISAEVINLRS 274 (367)
Q Consensus 235 ~~~g~di~Iia~G~--~v~~al~Aa~~L~~~Gi~v~vi~~~~ 274 (367)
+-++.+++||++|. ++...-+|.+.++++|+. |+-.+|
T Consensus 58 lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~--vi~~pT 97 (121)
T COG1504 58 LEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCE--VIELPT 97 (121)
T ss_pred HhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCe--EEEeCC
Confidence 34788999999995 555666777788887654 443444
No 362
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=26.43 E-value=3e+02 Score=21.16 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=42.6
Q ss_pred EEEEEechhHHHHHHH----HHHHHhc--CCceEEEEeeecCCCCHHHHHHHHhc-CCeEEEEeCCCCCCchH-HHHHHH
Q 017714 241 VTITAFSKIVGLSLKA----AEILAKE--GISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVG-AEICAS 312 (367)
Q Consensus 241 i~Iia~G~~v~~al~A----a~~L~~~--Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~ivvvEe~~~~GGlg-~~v~~~ 312 (367)
++|++-|+.-..+.++ ++.|+++ +..+.+--+..-.|--.+.+.++.+. .++|+++-=.-..|... ..|.+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~ 81 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAA 81 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHH
Confidence 6788999877655544 3344444 23444433333367667777765543 57888887765555533 345544
Q ss_pred HH
Q 017714 313 VI 314 (367)
Q Consensus 313 l~ 314 (367)
+.
T Consensus 82 ~~ 83 (101)
T cd03416 82 LA 83 (101)
T ss_pred HH
Confidence 43
No 363
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=26.29 E-value=1.9e+02 Score=28.74 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=36.7
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHH-hcCCeEEEEeC
Q 017714 239 KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASV-RKTNRLVTVEE 298 (367)
Q Consensus 239 ~di~Iia~G~~-v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~~~~~ivvvEe 298 (367)
.++.|+..+.. ...|++.++.|+++|+.+.+ +... +.+ .+.+..+- ++...++++.+
T Consensus 319 ~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i-~~~~-~~~-~~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 319 VDVYVVPLGEDAELAALKLAEKLRAAGIRVEL-DYGG-RKL-KKQFKYADKSGARFVLILGE 377 (412)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 58888887753 46788899999999999877 4332 233 33343222 23456677666
No 364
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=26.24 E-value=1.8e+02 Score=28.41 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=28.9
Q ss_pred HHHHhcCCCcEEEee---CCHHHHHHHHHHhHcC-CCcEEEecc
Q 017714 167 AAWYASVPGLKVLSP---YSSEDARGLLKAAIRD-PDPVVFLEN 206 (367)
Q Consensus 167 ~a~~~~iP~~~V~~P---~d~~e~~~~~~~a~~~-~~Pv~ir~~ 206 (367)
..-+++. ||.|+.. .|.+++..++.+|-.. +.|++|...
T Consensus 199 ~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 199 AKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIAR 241 (332)
T ss_dssp HHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEE
T ss_pred HHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecc
Confidence 4678888 9999887 6778888888888766 789998643
No 365
>PRK08114 cystathionine beta-lyase; Provisional
Probab=26.09 E-value=1.6e+02 Score=29.47 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=17.4
Q ss_pred HHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 259 ILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 259 ~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
.|++.|+++..+| +.|.+.+.+.++...++|.+|-
T Consensus 121 ~l~~~Gi~v~~vd-----~~d~~~l~~~l~~~TrlV~~Et 155 (395)
T PRK08114 121 ILSKLGVTTTWFD-----PLIGADIAKLIQPNTKVVFLES 155 (395)
T ss_pred HHHhcCcEEEEEC-----CCCHHHHHHhcCCCceEEEEEC
Confidence 3444566655554 2344555555543334555554
No 366
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=25.67 E-value=2.6e+02 Score=26.96 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=16.3
Q ss_pred CCHHHHHHHHhcCCeEEEEeCCCCCCc
Q 017714 278 LDRSTINASVRKTNRLVTVEEGFPQHG 304 (367)
Q Consensus 278 ~d~~~l~~~~~~~~~ivvvEe~~~~GG 304 (367)
+|.+.|.+.+++++..+++|.-+..|+
T Consensus 146 ~~i~~I~~l~~~~g~~livD~~~~~g~ 172 (363)
T TIGR02326 146 NPIEAVAKLAHRHGKVTIVDAMSSFGG 172 (363)
T ss_pred CcHHHHHHHHHHcCCEEEEEccccccC
Confidence 455667677776666666665444443
No 367
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=25.62 E-value=34 Score=28.21 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=25.6
Q ss_pred eeeCCcEEEEEechhHH--HHHHHHHHHHhcCCceEEEE
Q 017714 235 EREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVIN 271 (367)
Q Consensus 235 ~~~g~di~Iia~G~~v~--~al~Aa~~L~~~Gi~v~vi~ 271 (367)
+..+.+++||++|.... .--+..+.|++.||.+.+.+
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~ 93 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcC
Confidence 44567899999997632 24445557888887777654
No 368
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=25.53 E-value=3.1e+02 Score=22.86 Aligned_cols=46 Identities=7% Similarity=0.110 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcC-CeEEEEeC
Q 017714 251 GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEE 298 (367)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~-~~ivvvEe 298 (367)
..+.++++.++++++.+-+|.+- .+.+.+.+.+.+... +....+++
T Consensus 116 ~~~~~~~~~~~~~~v~i~~i~~g--~~~~~~~l~~ia~~~~g~~~~~~~ 162 (170)
T cd01465 116 DELARLVAQKRESGITLSTLGFG--DNYNEDLMEAIADAGNGNTAYIDN 162 (170)
T ss_pred HHHHHHHHHhhcCCeEEEEEEeC--CCcCHHHHHHHHhcCCceEEEeCC
Confidence 45556666677788888888887 578888888777654 45555554
No 369
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=25.41 E-value=3.6e+02 Score=23.89 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=40.6
Q ss_pred echhHHHHHHHHHHHHhc-CCceEEEEeeecCCCCHHHH---------------HHHHhcCCeEEEEeCCCCCCchHHHH
Q 017714 246 FSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTI---------------NASVRKTNRLVTVEEGFPQHGVGAEI 309 (367)
Q Consensus 246 ~G~~v~~al~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l---------------~~~~~~~~~ivvvEe~~~~GGlg~~v 309 (367)
+|++-..|..+++.+++. |.++++++++...| .+.+ .+.+..++.|++-=- ...|.+...+
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSP-ty~g~~~~~l 87 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVVKRVPETVP--EEVAEKSHGKTDQTAPVATPQELADYDAIIFGTP-TRFGNMASQM 87 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeccccCc--HHHHHhccCCcccCCccCCHHHHHHCCEEEEEec-ccccCccHHH
Confidence 455666777777778775 99999999865422 1111 123445666554333 3457777777
Q ss_pred HHHHHH
Q 017714 310 CASVIE 315 (367)
Q Consensus 310 ~~~l~~ 315 (367)
..++..
T Consensus 88 k~fld~ 93 (197)
T TIGR01755 88 RNFLDQ 93 (197)
T ss_pred HHHHHh
Confidence 777644
No 370
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.41 E-value=5.8e+02 Score=24.53 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=44.5
Q ss_pred eCCcEEEEEech-----hHHHHHHHHHHHHhcCC-ceEEEEeeecC-----------CCCHHHHHHHHhc--CCeEEEEe
Q 017714 237 EGKDVTITAFSK-----IVGLSLKAAEILAKEGI-SAEVINLRSIR-----------PLDRSTINASVRK--TNRLVTVE 297 (367)
Q Consensus 237 ~g~di~Iia~G~-----~v~~al~Aa~~L~~~Gi-~v~vi~~~~i~-----------P~d~~~l~~~~~~--~~~ivvvE 297 (367)
.|+|+.||.+.. .+-+.+-.++.|++.|- ++++|=+..-+ |+....+.+.+.. .++|+++|
T Consensus 35 ~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va~lL~~~g~d~vitvD 114 (304)
T PRK03092 35 RGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFKTAGADRIMTVD 114 (304)
T ss_pred CCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHHHHHHhcCCCeEEEEe
Confidence 368888888742 34455667777887776 47776543322 6777777777765 58999999
Q ss_pred CCC
Q 017714 298 EGF 300 (367)
Q Consensus 298 e~~ 300 (367)
-|.
T Consensus 115 ~H~ 117 (304)
T PRK03092 115 LHT 117 (304)
T ss_pred cCh
Confidence 996
No 371
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=25.37 E-value=2.8e+02 Score=24.63 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCceEEEEeeecCC---CCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHH
Q 017714 253 SLKAAEILAKEGISAEVINLRSIRP---LDRSTINASVRKTNRLVTVEEGFPQHGVGAEIC 310 (367)
Q Consensus 253 al~Aa~~L~~~Gi~v~vi~~~~i~P---~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~ 310 (367)
+.++.....+++.++++.|+....| +|.+.=.+.+..++.||+.=.-+ ..|+-+.+.
T Consensus 22 ~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa~LK 81 (184)
T PRK04930 22 ANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPALLK 81 (184)
T ss_pred HHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcHHHH
Confidence 3344444445567899999999877 67776666788888877655533 234444443
No 372
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.25 E-value=84 Score=23.18 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHh
Q 017714 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE 316 (367)
Q Consensus 249 ~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~ 316 (367)
..+.|++|-+.|+++|++++++ |.|.+. -..++..+-+++.. -+.+.+.+.++
T Consensus 10 st~~a~~~ek~lk~~gi~~~li------P~P~~i----~~~CG~al~~~~~d-----~~~i~~~l~~~ 62 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLI------PTPREI----SAGCGLALRFEPED-----LEKIKEILEEN 62 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEe------CCChhc----cCCCCEEEEEChhh-----HHHHHHHHHHC
Confidence 4567888889999999999988 666663 23466666666643 25566666654
No 373
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.24 E-value=1.3e+02 Score=29.03 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=38.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEe
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvE 297 (367)
+|+++++|..|..+..-+ +..|.++|..+++++-++- .+.+.+++.+-||+.=
T Consensus 158 ~Gk~V~vIG~s~ivG~Pm--A~~L~~~gatVtv~~~~t~------~l~e~~~~ADIVIsav 210 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPM--AALLLQAHCSVTVVHSRST------DAKALCRQADIVVAAV 210 (301)
T ss_pred CCCEEEEECCCCccHHHH--HHHHHHCCCEEEEECCCCC------CHHHHHhcCCEEEEec
Confidence 588999999986666554 3457778999999976652 3556677777666543
No 374
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=25.23 E-value=3.1e+02 Score=22.11 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=27.8
Q ss_pred EEechhHHHHHHH----HHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeC
Q 017714 244 TAFSKIVGLSLKA----AEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (367)
Q Consensus 244 ia~G~~v~~al~A----a~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe 298 (367)
|-|+++.....+. ++.|.+.|+++.++++....| +. +.+.+.|++.=-
T Consensus 3 Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~---~~----l~~~d~iilgsp 54 (140)
T TIGR01753 3 IVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADA---ED----LLSYDAVLLGCS 54 (140)
T ss_pred EEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCH---HH----HhcCCEEEEEcC
Confidence 4455555444444 455666789999998876533 22 234666665444
No 375
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.04 E-value=2.7e+02 Score=21.69 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=26.5
Q ss_pred EEEEechhHHHHH----HHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEE
Q 017714 242 TITAFSKIVGLSL----KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (367)
Q Consensus 242 ~Iia~G~~v~~al----~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivv 295 (367)
++++||+.+.... +.-+.|+++|+++++...+ + ..+...+.+.+.+++
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~-~-----~e~~~~~~~~D~iv~ 56 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR-V-----NEIETYMDGVHLICT 56 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEec-H-----HHHhhhcCCCCEEEE
Confidence 4556666554333 3335567789999887732 2 223333455665443
No 376
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.01 E-value=5.3e+02 Score=23.49 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=41.6
Q ss_pred ecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCCHHHHHHHh------CC
Q 017714 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMA------VP 347 (367)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~------~l 347 (367)
.+.+++.+.+.+.+..++.++. -.. ..|++..+.++++- ..|+. +.+. ....+...+.. .-
T Consensus 263 ~~g~~~~~~~~~~~~~ad~~i~-~~~--~~~~~~~~~Ea~~~------G~pvI--~~~~--~~~~~~~~~~~~g~~~~~~ 329 (377)
T cd03798 263 FLGAVPHEEVPAYYAAADVFVL-PSL--REGFGLVLLEAMAC------GLPVV--ATDV--GGIPEIITDGENGLLVPPG 329 (377)
T ss_pred EeCCCCHHHHHHHHHhcCeeec-chh--hccCChHHHHHHhc------CCCEE--EecC--CChHHHhcCCcceeEECCC
Confidence 3456677777788887775443 222 25677777777752 34543 2221 11122222111 12
Q ss_pred CHHHHHHHHHHHHhhh
Q 017714 348 QVLCFLYDSSIDGCYK 363 (367)
Q Consensus 348 ~~~~I~~~~i~~~l~~ 363 (367)
+.++++++ +.+++.+
T Consensus 330 ~~~~l~~~-i~~~~~~ 344 (377)
T cd03798 330 DPEALAEA-ILRLLAD 344 (377)
T ss_pred CHHHHHHH-HHHHhcC
Confidence 77888888 8887764
No 377
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=24.71 E-value=3.6e+02 Score=26.91 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCcccccccchh-----HHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccc
Q 017714 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKG-----LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF 117 (367)
Q Consensus 43 ~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~-----~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~ 117 (367)
+++-|.++.+..++|++=-+|+. .+|+.++... +.++.|.+|+|..==|=|+-++.|.-.|+-|+...+..-+-
T Consensus 127 ~AkRLte~~q~ga~IylKrEdln-h~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAe 205 (477)
T KOG1395|consen 127 RAKRLTEHCQTGARIYLKREDLN-HTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAE 205 (477)
T ss_pred HHHHHHHHhCCCCEEEEEecCCC-ccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechh
Confidence 35667778888899999999985 5677666443 34577788887654588999999999999999988876555
Q ss_pred cHHHHHHHHHHHHH
Q 017714 118 NFSMQAIDHIINSA 131 (367)
Q Consensus 118 ~f~~ra~dqi~~~~ 131 (367)
++=..++.-+|+.+
T Consensus 206 d~~rqalnvfrmrl 219 (477)
T KOG1395|consen 206 DYRRQALNVFRMRL 219 (477)
T ss_pred HHHHHHHHHHHHHH
Confidence 66667777777655
No 378
>PRK00170 azoreductase; Reviewed
Probab=24.52 E-value=3.3e+02 Score=23.76 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhc--CCceEEEEeeecC-C-CCH------------------------HHHHHHHhcCCeEEEEeCCCCC
Q 017714 251 GLSLKAAEILAKE--GISAEVINLRSIR-P-LDR------------------------STINASVRKTNRLVTVEEGFPQ 302 (367)
Q Consensus 251 ~~al~Aa~~L~~~--Gi~v~vi~~~~i~-P-~d~------------------------~~l~~~~~~~~~ivvvEe~~~~ 302 (367)
..+..+.+.|+++ |.+++++|+.... | ++. +.+.+.+...+.||++=.-+ .
T Consensus 20 ~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y-~ 98 (201)
T PRK00170 20 QLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMY-N 98 (201)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeeccc-c
Confidence 3444566778887 8999999997543 3 221 23345566778766655533 4
Q ss_pred CchHHHHHHHH
Q 017714 303 HGVGAEICASV 313 (367)
Q Consensus 303 GGlg~~v~~~l 313 (367)
+++-+.+...+
T Consensus 99 ~~~pa~LK~~i 109 (201)
T PRK00170 99 FSIPTQLKAYI 109 (201)
T ss_pred cCCcHHHHHHH
Confidence 67777766665
No 379
>PRK14012 cysteine desulfurase; Provisional
Probab=24.45 E-value=3.8e+02 Score=26.40 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHhcCCeEEEEeCCCC
Q 017714 276 RPLDRSTINASVRKTNRLVTVEEGFP 301 (367)
Q Consensus 276 ~P~d~~~l~~~~~~~~~ivvvEe~~~ 301 (367)
.+.|.+.|.+.+++.+.++++|+...
T Consensus 159 ~~~~~~~I~~la~~~g~~vivD~a~~ 184 (404)
T PRK14012 159 VIQDIAAIGEICRERGIIFHVDAAQS 184 (404)
T ss_pred chhhHHHHHHHHHHcCCEEEEEcchh
Confidence 44667777777777766665565543
No 380
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=24.39 E-value=1.7e+02 Score=28.81 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=36.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHH----HHHhcCCeEEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN----ASVRKTNRLVT 295 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~----~~~~~~~~ivv 295 (367)
++++++||+.|.|...+ ++.|.++|++-=.|--|+..+.+.+.+. ....+++-||+
T Consensus 173 ~~k~vLvIGaGem~~l~---a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 173 KKASLLFIGYSEINRKV---AYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFF 232 (338)
T ss_pred cCCEEEEEcccHHHHHH---HHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEE
Confidence 46889999999998875 4468788876444455665554444332 34456665554
No 381
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=24.25 E-value=3e+02 Score=23.75 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHHHHHHHH-hcCCceEEEEeeecCC-C---------C--HHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHH
Q 017714 251 GLSLKAAEILA-KEGISAEVINLRSIRP-L---------D--RSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (367)
Q Consensus 251 ~~al~Aa~~L~-~~Gi~v~vi~~~~i~P-~---------d--~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l 313 (367)
..+..+++.+. +.|.+++++|+.-+.| + + .+.+.+.+...+.+|++=.-+ .|++.+.+..++
T Consensus 17 ~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~~~~LKn~l 91 (174)
T TIGR03566 17 ALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY-RGSYTGLFKHLF 91 (174)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC-cCcCcHHHHHHH
Confidence 34444455555 4589999999866521 1 1 134566677777766655533 477777777666
No 382
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=24.17 E-value=49 Score=27.40 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=35.0
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCC
Q 017714 239 KDVTITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 239 ~di~Iia~G~~v----~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~ 300 (367)
.++.+.+.|... ..--.|++.|++.|++.+- +.-++++.+.+ .+.+.||++++..
T Consensus 29 ~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~~~---~~s~~l~~~~~----~~~D~Ii~m~~~~ 87 (138)
T PF01451_consen 29 DRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDISG---HRSRQLTEEDL----DEADLIITMDDSH 87 (138)
T ss_dssp TTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSCTT---SBBCBGGHHHH----HHSSEEEESSHHH
T ss_pred CCcEEEEEeecccccccccchHHHHHHHhCCCccc---ceecccccccc----ccCCEEEEccHHH
Confidence 455666666541 1122466678888988753 34567777754 3578999998864
No 383
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=24.06 E-value=2e+02 Score=28.88 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=51.7
Q ss_pred EEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCe-EEEEeCCCCCCch--HHHHHHHHHHh
Q 017714 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNR-LVTVEEGFPQHGV--GAEICASVIEE 316 (367)
Q Consensus 243 Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~-ivvvEe~~~~GGl--g~~v~~~l~~~ 316 (367)
||++-..=+.+++..+.|+.+|.+|+.+.+..=--+|.+.|++.+++.-. |-++--++-.|-+ =.+|++.+.++
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~ 170 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKER 170 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHc
Confidence 55666666778888999988899999998888777889999988875433 3344444444433 24566666554
No 384
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.05 E-value=4.3e+02 Score=22.09 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCceEEEEeeecCCCCHHHHHHHHhc-CCeEEEE-----eCCCCCCch
Q 017714 264 GISAEVINLRSIRPLDRSTINASVRK-TNRLVTV-----EEGFPQHGV 305 (367)
Q Consensus 264 Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~ivvv-----Ee~~~~GGl 305 (367)
--+++||.+.|.--++.+.+++++++ .+.|+++ |=|+..|..
T Consensus 27 p~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ 74 (132)
T COG1908 27 PPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNY 74 (132)
T ss_pred CCceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccch
Confidence 44789999999999999998887765 5777776 446665554
No 385
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=24.04 E-value=4.9e+02 Score=25.02 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEE-----EeCCCCCCchHHHHHHHHHHhccCCCCCCeEEE
Q 017714 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT-----VEEGFPQHGVGAEICASVIEESFGYLDAPVERI 328 (367)
Q Consensus 254 l~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivv-----vEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~i 328 (367)
..-++.|.+.||++++|.-.. +--..++.+.+++ ++++....-.|......++.. ...|++.+
T Consensus 156 ~~~a~~L~~~gI~vtlI~Dsa--------~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~----~~vPv~V~ 223 (301)
T TIGR00511 156 HITAKELRDYGIPVTLIVDSA--------VRYFMKEVDHVVVGADAITANGALINKIGTSQLALAARE----ARVPFMVA 223 (301)
T ss_pred HHHHHHHHHCCCCEEEEehhH--------HHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHH----hCCCEEEE
Confidence 345667888999999883332 3334556776654 233322233577666666654 25677655
Q ss_pred ecC
Q 017714 329 AGA 331 (367)
Q Consensus 329 g~~ 331 (367)
+-.
T Consensus 224 a~~ 226 (301)
T TIGR00511 224 AET 226 (301)
T ss_pred ccc
Confidence 443
No 386
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=24.02 E-value=4.5e+02 Score=24.68 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=4.9
Q ss_pred CcEEEEEech
Q 017714 239 KDVTITAFSK 248 (367)
Q Consensus 239 ~di~Iia~G~ 248 (367)
.++++++.|.
T Consensus 55 ~~Vtvvs~Gp 64 (256)
T PRK03359 55 AQVTALSVGG 64 (256)
T ss_pred CEEEEEEECC
Confidence 3455555554
No 387
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=24.01 E-value=1.5e+02 Score=28.87 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=37.1
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhcCCceEEEEeeecCC---------CCHHHHHHHHhcCCeEEEE
Q 017714 237 EGKDVTITAFSKIVG-LSLKAAEILAKEGISAEVINLRSIRP---------LDRSTINASVRKTNRLVTV 296 (367)
Q Consensus 237 ~g~di~Iia~G~~v~-~al~Aa~~L~~~Gi~v~vi~~~~i~P---------~d~~~l~~~~~~~~~ivvv 296 (367)
+|+.++||.||+.-+ .|+ -|++.|++|.| -++.=.+ |...++.+++++.+.|+++
T Consensus 17 kgK~iaIIGYGsQG~ahal----NLRDSGlnVii-Glr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L 81 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQAL----NLRDSGLNVII-GLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMIL 81 (338)
T ss_pred cCCeEEEEecChHHHHHHh----hhhhcCCcEEE-EecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEe
Confidence 567899999999775 333 48999999755 4443333 3334677888888865544
No 388
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.94 E-value=1.4e+02 Score=27.10 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHh-hCCcEEEEecCCCCcccccccchhHHHHhCCCceeec
Q 017714 38 MVREALNSALDEEMS-ADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDT 89 (367)
Q Consensus 38 ~~r~a~~~~L~~l~~-~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~ 89 (367)
.-|++|-++|.+.++ ..++++++.. +... +...|-++| +.|.+|.
T Consensus 62 ~~r~~~d~~l~~~l~~~~~dlvvLAG----yMrI--L~~~fl~~~-~grIlNI 107 (200)
T COG0299 62 PSREAFDRALVEALDEYGPDLVVLAG----YMRI--LGPEFLSRF-EGRILNI 107 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcc----hHHH--cCHHHHHHh-hcceEec
Confidence 357788887776665 5889999852 2222 346789999 9999996
No 389
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=23.83 E-value=2.7e+02 Score=27.95 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=40.3
Q ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCC--------CCCHHHHHHHhCCCHHHHHHH
Q 017714 290 TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP--------MPYAANLERMAVPQVLCFLYD 355 (367)
Q Consensus 290 ~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~--------~~~~~~l~~~~~l~~~~I~~~ 355 (367)
.|+||+|||+.+.|--.+.|...+-+.+- +.--.|++.|..- +|..++|-. +.++.|+|.+.
T Consensus 356 GKrvvlVDDSIVRGtTs~~IVkmlreaGA---keVh~riAsPpi~~pc~yGIdipt~keLIA-~~~t~deiae~ 425 (474)
T KOG0572|consen 356 GKRVVLVDDSIVRGTTSSPIVKMLREAGA---KEVHIRIASPPIKYPCYYGIDIPTSKELIA-NKLTVDEIAEH 425 (474)
T ss_pred CceEEEEecceeccCchHHHHHHHHHcCC---cEEEEEecCCcccccceeecCCCCHHHHHh-cCCCHHHHHHH
Confidence 46899999999999999999999977642 2112355555421 133344443 34677777766
No 390
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=23.82 E-value=4.4e+02 Score=25.54 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=46.4
Q ss_pred EEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEE-----EeCCCCCCchHHHHHHHHHHh
Q 017714 242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT-----VEEGFPQHGVGAEICASVIEE 316 (367)
Q Consensus 242 ~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivv-----vEe~~~~GGlg~~v~~~l~~~ 316 (367)
++|+=+..-.+....++.|++.||.+++|- | .++...+++.++|++ ++++....-.|.......+.+
T Consensus 148 V~VtESRP~~eG~~~ak~L~~~gI~~~~I~-------D-sa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e 219 (301)
T COG1184 148 VIVTESRPRGEGRIMAKELRQSGIPVTVIV-------D-SAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARE 219 (301)
T ss_pred EEEEcCCCcchHHHHHHHHHHcCCceEEEe-------c-hHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHH
Confidence 344445455556778889999999999881 2 334567778887664 223222222354444444443
Q ss_pred ccCCCCCCeEEEecCCCCC
Q 017714 317 SFGYLDAPVERIAGADVPM 335 (367)
Q Consensus 317 ~~~~~~~~v~~ig~~d~~~ 335 (367)
+..|+...+-.-.|.
T Consensus 220 ----~~~Pf~v~aesyKf~ 234 (301)
T COG1184 220 ----LRVPFYVVAESYKFV 234 (301)
T ss_pred ----hCCCEEEEeeeeccc
Confidence 345665555443343
No 391
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=23.80 E-value=3.2e+02 Score=28.79 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=52.0
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHhHcCCCcEEEeccc-cccCCCCCccccccCCCccc---cCCcEEEeeeCCcEEEEEe
Q 017714 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENE-LLYGESFPVSAEVLDSSFCL---PIGKAKIEREGKDVTITAF 246 (367)
Q Consensus 171 ~~iP~~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~~-~~~~~~~~~~~~~~~~~~~~---~~Gk~~v~~~g~di~Iia~ 246 (367)
...|- -|+.|.|.+|+..+++.|.+.+-|++.|-.. ++.+...|...........+ .+.+...+.++. .+++-.
T Consensus 36 ~g~P~-AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID~~~-~VvVeP 113 (564)
T PRK11183 36 QGDAL-AVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLNNGK-QVLALP 113 (564)
T ss_pred CCCCC-EEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEECCCC-eEEEeC
Confidence 34554 5999999999999999999999999987432 22222222110000000011 123333444444 445668
Q ss_pred chhHHHHHHHHHHHHhcCC
Q 017714 247 SKIVGLSLKAAEILAKEGI 265 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi 265 (367)
|.......++++ +.|.
T Consensus 114 GVtl~~LeeaLk---~~Gl 129 (564)
T PRK11183 114 GTTLYQLEKALK---PLGR 129 (564)
T ss_pred CCcHHHHHHHHH---HhCC
Confidence 988888777644 4454
No 392
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.55 E-value=2.1e+02 Score=27.29 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=37.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEe
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvE 297 (367)
+|++++|+..|..+..++ +..|.++|..|++.+-+ .+.+.+.+++.+-+|..-
T Consensus 158 ~Gk~vvViG~gg~vGkpi--a~~L~~~gatVtv~~~~------t~~L~~~~~~aDIvI~At 210 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPM--AMMLLNANATVTICHSR------TQNLPELVKQADIIVGAV 210 (283)
T ss_pred CCCEEEEECCcHHHHHHH--HHHHHhCCCEEEEEeCC------chhHHHHhccCCEEEEcc
Confidence 678899999998887765 34566778888877753 345666677777655543
No 393
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=23.53 E-value=95 Score=27.47 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc
Q 017714 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK 289 (367)
Q Consensus 249 ~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~ 289 (367)
.-...++|+++++++|+ +..|+.| |+|...+.+.+..
T Consensus 11 ~~~~l~~A~~~~r~~G~--~~~d~yt--PfPvhgld~alg~ 47 (173)
T PF11821_consen 11 DPEALLHAARKLRDAGY--RIWDVYT--PFPVHGLDEALGL 47 (173)
T ss_pred CHHHHHHHHHHHHHcCC--ceeEEeC--CCcCcCHHHHhCC
Confidence 34678899999999988 7777766 7777777666553
No 394
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=23.44 E-value=1.4e+02 Score=29.44 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.8
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
.+++++||..|. .++|.+..|.+.|.+|+||...
T Consensus 143 ~~~~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 143 PERSVVIVGAGT---IGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecC
Confidence 467899998884 4667788888889999999753
No 395
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=23.44 E-value=3.2e+02 Score=23.82 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHH
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 315 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~ 315 (367)
|++-..|...++.|+. |+++.++++....+. .+.+++.||+ =-....|.+...+..++.+
T Consensus 12 G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~-------~l~~yD~vIl-Gspi~~G~~~~~~~~fl~~ 71 (177)
T PRK11104 12 GQTRKIASYIASELKE-GIQCDVVNLHRIEEP-------DLSDYDRVVI-GASIRYGHFHSALYKFVKK 71 (177)
T ss_pred ChHHHHHHHHHHHhCC-CCeEEEEEhhhcCcc-------CHHHCCEEEE-ECccccCCcCHHHHHHHHH
Confidence 4555556666667766 888888887654322 2345676554 3444567777777777644
No 396
>PLN02463 lycopene beta cyclase
Probab=23.29 E-value=90 Score=31.82 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=27.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCC
Q 017714 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD 279 (367)
Q Consensus 239 ~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d 279 (367)
-|++||+.|..-- .+|..|.++|++|.||+.....++|
T Consensus 29 ~DVvIVGaGpAGL---alA~~La~~Gl~V~liE~~~~~~~p 66 (447)
T PLN02463 29 VDLVVVGGGPAGL---AVAQQVSEAGLSVCCIDPSPLSIWP 66 (447)
T ss_pred ceEEEECCCHHHH---HHHHHHHHCCCeEEEeccCccchhc
Confidence 4899999886332 2445577789999999986544443
No 397
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=23.28 E-value=2.2e+02 Score=28.97 Aligned_cols=60 Identities=28% Similarity=0.307 Sum_probs=32.1
Q ss_pred ccccEEEEeC-CCCCCCCCCCc----hhHHH-HHHh--cCCCcEEEeeCCHHHHHHHHHHh----HcCCCcEEEe
Q 017714 142 ISVPIVFRGP-NGAAAGVGAQH----SHCYA-AWYA--SVPGLKVLSPYSSEDARGLLKAA----IRDPDPVVFL 204 (367)
Q Consensus 142 ~~~pvv~~~~-~G~~~g~G~tH----~~~~~-a~~~--~iP~~~V~~P~d~~e~~~~~~~a----~~~~~Pv~ir 204 (367)
.++|+++++. ++.. .|.++ ...+. .... .+|++.| .=.|..+++..+..| .+.++|++|-
T Consensus 250 ~~LPvIfVV~NN~ya--ig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~~a~~~A~~~Ar~g~gP~LIe 321 (433)
T PLN02374 250 WKLPIVFVVENNLWA--IGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 321 (433)
T ss_pred hCCCEEEEEeCCCEe--ecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5899999875 3422 12211 11122 2222 4666654 445666666544444 4457899985
No 398
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.28 E-value=1.6e+02 Score=23.58 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=46.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcC-CceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhcc
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESF 318 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~G-i~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~ 318 (367)
++.|++.|.....|..++..|...| +.+.+++ +.+.......+.+.+.+|++=. .|-..++.+.+..-.
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~I~iS~----sG~t~e~~~~~~~a~- 70 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEA-----ASEFRYRRPLLDEDTLVIAISQ----SGETADTLAALRLAK- 70 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEe-----hhHhhhcCCCCCCCcEEEEEeC----CcCCHHHHHHHHHHH-
Confidence 3779999999999999999998875 8887776 1111111112334444555433 233455555443211
Q ss_pred CCCCCCeEEEecC
Q 017714 319 GYLDAPVERIAGA 331 (367)
Q Consensus 319 ~~~~~~v~~ig~~ 331 (367)
...+++..|.-.
T Consensus 71 -~~g~~vi~iT~~ 82 (126)
T cd05008 71 -EKGAKTVAITNV 82 (126)
T ss_pred -HcCCeEEEEECC
Confidence 124566666554
No 399
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.12 E-value=1.3e+02 Score=22.22 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=29.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeec--CCCCHHH---HHHHHhcC
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI--RPLDRST---INASVRKT 290 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i--~P~d~~~---l~~~~~~~ 290 (367)
++||.-|.. ++|.|..|.+.|.++++|+..-- .-+|.+. +.+.+++.
T Consensus 2 vvViGgG~i---g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~ 53 (80)
T PF00070_consen 2 VVVIGGGFI---GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKR 53 (80)
T ss_dssp EEEESSSHH---HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT
T ss_pred EEEECcCHH---HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHC
Confidence 567776653 45677778888999999987642 1245553 33444444
No 400
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=23.04 E-value=2.3e+02 Score=30.05 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCcccccccc--hhHHHHhCCCce-----eechh--hHHHHHHHHHHHhc-cCCeeEE
Q 017714 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKIS--KGLLEKYGPERV-----LDTPI--TEAGFTGIGVGAAY-YGLKPVV 112 (367)
Q Consensus 43 ~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~--~~~~~~~~p~R~-----i~~GI--aE~~~vg~AaGlA~-~G~~p~~ 112 (367)
....+.++++++ =+|+.+...++.-|.|+-. +.+.++| |++| +|+|- +-.|+.|.|.=.|. -+.||.-
T Consensus 518 v~~iaeefl~Rn-yiVvttGC~Am~igmykDedGkTlYEky-pg~Fd~ggLvntGsCvSnaHi~GAaIKva~IFak~plr 595 (772)
T COG1152 518 VYKIAEEFLKRN-YIVVTTGCIAMDIGMYKDEDGKTLYEKY-PGNFDAGGLVNTGSCVSNAHIAGAAIKVANIFAKRPLR 595 (772)
T ss_pred HHHHHHHHHHcC-eEEEecchhhhhccceecccCceehhcC-CCccccCceeeccchhhhhhhhhhHHHHHHHhcCCCcC
Confidence 344444555444 4666666677766666432 2478999 9995 88876 44555666655444 3666765
Q ss_pred e
Q 017714 113 E 113 (367)
Q Consensus 113 ~ 113 (367)
.
T Consensus 596 G 596 (772)
T COG1152 596 G 596 (772)
T ss_pred C
Confidence 4
No 401
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=23.00 E-value=1e+02 Score=27.12 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=31.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCC--------HHHHHHHHhcCCeEEEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD--------RSTINASVRKTNRLVTV 296 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d--------~~~l~~~~~~~~~ivvv 296 (367)
+++.++||.||+.-+ + -+.-|++.|++|.|-.-..=+-++ ...+.+.+++.+-|+.+
T Consensus 3 ~~k~IAViGyGsQG~-a--~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L 67 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGH-A--HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLL 67 (165)
T ss_dssp CTSEEEEES-SHHHH-H--HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-
T ss_pred CCCEEEEECCChHHH-H--HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEe
Confidence 467899999998843 2 344589999988775333211111 11345667777755443
No 402
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=22.89 E-value=2.6e+02 Score=28.67 Aligned_cols=91 Identities=21% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHH---hcC-CceEEEEeeecCCCCHH----------HHHHHHhcCCeEEEEeCCCCCC
Q 017714 238 GKDVTITAFSKIVGLSLKAAEILA---KEG-ISAEVINLRSIRPLDRS----------TINASVRKTNRLVTVEEGFPQH 303 (367)
Q Consensus 238 g~di~Iia~G~~v~~al~Aa~~L~---~~G-i~v~vi~~~~i~P~d~~----------~l~~~~~~~~~ivvvEe~~~~G 303 (367)
..|++|=--=+....|+.-++.+- ++| ++=..+-=.+|-|=... .+++ +-+-|+|++|||+.+.|
T Consensus 283 eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~-~v~GKrVvlVDDSIVRG 361 (470)
T COG0034 283 EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVRE-VVKGKRVVLVDDSIVRG 361 (470)
T ss_pred cccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHH-HhCCCeEEEEccccccC
Confidence 346666555566677776666542 112 23344444556665532 1222 22467999999999999
Q ss_pred chHHHHHHHHHHhccCCCCCCeEEEecCC
Q 017714 304 GVGAEICASVIEESFGYLDAPVERIAGAD 332 (367)
Q Consensus 304 Glg~~v~~~l~~~~~~~~~~~v~~ig~~d 332 (367)
--...|.+.+-+.|- ..--.+++.|.
T Consensus 362 TTsr~IV~mlReAGA---kEVHvriasP~ 387 (470)
T COG0034 362 TTSRRIVQMLREAGA---KEVHVRIASPP 387 (470)
T ss_pred ccHHHHHHHHHHhCC---CEEEEEecCCC
Confidence 999999999976541 21123666665
No 403
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=22.80 E-value=2e+02 Score=22.79 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=33.0
Q ss_pred cEEEEEec----hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHh
Q 017714 240 DVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR 288 (367)
Q Consensus 240 di~Iia~G----~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~ 288 (367)
+++++-.| +.....-++.+.|++.|++..+=-+.|.-==|.+.+.+.++
T Consensus 4 eisv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~ 56 (97)
T TIGR00106 4 EVSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAIK 56 (97)
T ss_pred EEEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHHH
Confidence 56777777 44556667888898899999887776664334555544443
No 404
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=22.78 E-value=2.1e+02 Score=25.94 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=37.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHH
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS 286 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~ 286 (367)
+++...|..-.-.+-||..|...|++|+|+-+.--++...+..+..
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 4556677888899999999999999999998888777777765544
No 405
>PRK08639 threonine dehydratase; Validated
Probab=22.73 E-value=5.9e+02 Score=25.58 Aligned_cols=113 Identities=22% Similarity=0.198 Sum_probs=58.6
Q ss_pred cEEEeeCCHHHHHHHHHHhHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEE-EeeeCCcEE-EEEechhHHHH
Q 017714 176 LKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IEREGKDVT-ITAFSKIVGLS 253 (367)
Q Consensus 176 ~~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~-v~~~g~di~-Iia~G~~v~~a 253 (367)
-.|+..++.+-...+-..|....-|+.|..|+.. | ..|.. +..-|++++ ++-.|.....+
T Consensus 74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~-----~-------------~~k~~~~r~~GA~vv~v~~~g~~~~~a 135 (420)
T PRK08639 74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTT-----P-------------QQKIDQVRFFGGEFVEIVLVGDTFDDS 135 (420)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC-----h-------------HHHHHHHHHcCCCeeEEEEeCcCHHHH
Confidence 3577777777776666666666667777543210 0 00111 112355532 33457777778
Q ss_pred HHHHHHHHhcCCceEEEEeeecCCCCHHH-----------HHHHHhc---CCeEEEEeCCCCCCchHHHHHHHHHH
Q 017714 254 LKAAEILAKEGISAEVINLRSIRPLDRST-----------INASVRK---TNRLVTVEEGFPQHGVGAEICASVIE 315 (367)
Q Consensus 254 l~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~-----------l~~~~~~---~~~ivvvEe~~~~GGlg~~v~~~l~~ 315 (367)
.+.+.++.++. +..++.|||... |.+.+.. -+. |++--+ .||+-+-++..+.+
T Consensus 136 ~~~a~~~a~~~------g~~~~~~~~~~~~~~G~~tig~EI~eq~~~~~~~D~-vv~~vG--~GG~~aGva~~~k~ 202 (420)
T PRK08639 136 AAAAQEYAEET------GATFIPPFDDPDVIAGQGTVAVEILEQLEKEGSPDY-VFVPVG--GGGLISGVTTYLKE 202 (420)
T ss_pred HHHHHHHHHhc------CCcccCCCCChhHhcchhHHHHHHHHhccccCCCCE-EEEecC--hhHHHHHHHHHHHH
Confidence 77777765441 234566776431 2222322 233 444444 36666667766654
No 406
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=22.66 E-value=1.6e+02 Score=23.79 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=25.0
Q ss_pred EEEEEech--hHHHHHHHHHHHHhcCCceEEEEeee
Q 017714 241 VTITAFSK--IVGLSLKAAEILAKEGISAEVINLRS 274 (367)
Q Consensus 241 i~Iia~G~--~v~~al~Aa~~L~~~Gi~v~vi~~~~ 274 (367)
|+|++.|+ -+...+..++.|++.|.+|.+...+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 46777775 45688888999999999999764443
No 407
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=22.62 E-value=2.9e+02 Score=24.40 Aligned_cols=45 Identities=4% Similarity=0.003 Sum_probs=32.1
Q ss_pred EEEEEechhH----HHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHh
Q 017714 241 VTITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR 288 (367)
Q Consensus 241 i~Iia~G~~v----~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~ 288 (367)
++|+|-|..- ....++++.|+++||.+-+|-+-.. +.+.++..+.
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~---~~~el~~ia~ 160 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA---SENKLKLLAG 160 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc---cHHHHHHhcC
Confidence 5666777542 3466888899999999999988763 5666765554
No 408
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.57 E-value=2.4e+02 Score=27.09 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=37.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEe
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvE 297 (367)
+|++++||.-|..+..-+ +..|.++|..|++.+-+| +.+.+.+++.+-+|+.-
T Consensus 156 ~Gk~vvVvGrs~~VG~Pl--a~lL~~~gAtVtv~hs~t------~~l~~~~~~ADIvV~Av 208 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPL--AMLMLNAGASVSVCHILT------KDLSFYTQNADIVCVGV 208 (285)
T ss_pred CCCEEEEECCCchhHHHH--HHHHHHCCCEEEEEeCCc------HHHHHHHHhCCEEEEec
Confidence 578899999888887654 446777888888876554 34667788887655543
No 409
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.37 E-value=1.3e+02 Score=25.02 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCc-eEEEE
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGIS-AEVIN 271 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~-v~vi~ 271 (367)
++++++|++.|.+...+.. .|.+.|.+ +.|++
T Consensus 11 ~~~~vlviGaGg~ar~v~~---~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAA---ALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSHHHHHHHH---HHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHHHHHHHHH---HHHHcCCCEEEEEE
Confidence 3678899999988776544 46666887 88876
No 410
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=22.16 E-value=3.3e+02 Score=26.79 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=20.8
Q ss_pred CCHHHHHHHHhcCCeEEEEeCCCCCCch
Q 017714 278 LDRSTINASVRKTNRLVTVEEGFPQHGV 305 (367)
Q Consensus 278 ~d~~~l~~~~~~~~~ivvvEe~~~~GGl 305 (367)
.|.+.|.+.+++++..+++|+....|.+
T Consensus 159 ~~~~~I~~l~~~~g~~livD~a~a~g~~ 186 (402)
T TIGR02006 159 QDIAAIGEICRERKVFFHVDAAQSVGKI 186 (402)
T ss_pred ccHHHHHHHHHHcCCEEEEEcchhcCCc
Confidence 5778888888888877878887654433
No 411
>PRK12483 threonine dehydratase; Reviewed
Probab=22.16 E-value=5.2e+02 Score=27.04 Aligned_cols=120 Identities=24% Similarity=0.234 Sum_probs=59.3
Q ss_pred EEeeCCHHHHHHHHHHhHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEE-EeeeCCcEEEEEechhHHHHHHH
Q 017714 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IEREGKDVTITAFSKIVGLSLKA 256 (367)
Q Consensus 178 V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~-v~~~g~di~Iia~G~~v~~al~A 256 (367)
|++.++.+-...+-..|-...-|+.|.+|.. .| . -|.. +..-|+++.+ +|.....+.+.
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~-----tp---~----------~Kv~~~r~~GAeVil--~g~~~d~a~~~ 147 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRT-----TP---Q----------LKVDGVRAHGGEVVL--HGESFPDALAH 147 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCC-----CC---H----------HHHHHHHHCCCEEEE--ECCCHHHHHHH
Confidence 5566666665555555555556666654321 00 0 0000 1122454444 36667777777
Q ss_pred HHHHHhc-CCceEEEEeeecCCCCHHH-----------HHHHHhc-CCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCC
Q 017714 257 AEILAKE-GISAEVINLRSIRPLDRST-----------INASVRK-TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDA 323 (367)
Q Consensus 257 a~~L~~~-Gi~v~vi~~~~i~P~d~~~-----------l~~~~~~-~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~ 323 (367)
+.++.++ | ...+.|||... |.+.+.. .+. |++--+. ||+-+-++..+.+. .+
T Consensus 148 A~~la~e~g-------~~~v~pfdd~~viaGqgTig~EI~eQ~~~~~D~-VvvpvGg--GGliaGia~~~K~~-----~p 212 (521)
T PRK12483 148 ALKLAEEEG-------LTFVPPFDDPDVIAGQGTVAMEILRQHPGPLDA-IFVPVGG--GGLIAGIAAYVKYV-----RP 212 (521)
T ss_pred HHHHHHhcC-------CeeeCCCCChHHHHHHHHHHHHHHHHhCCCCCE-EEEecCc--cHHHHHHHHHHHHh-----CC
Confidence 7666543 3 23557786431 2223332 333 4444443 67766677666432 23
Q ss_pred CeEEEecCC
Q 017714 324 PVERIAGAD 332 (367)
Q Consensus 324 ~v~~ig~~d 332 (367)
.++-+|++.
T Consensus 213 ~vkVIGVep 221 (521)
T PRK12483 213 EIKVIGVEP 221 (521)
T ss_pred CCEEEEEEe
Confidence 455566653
No 412
>PLN02530 histidine-tRNA ligase
Probab=22.07 E-value=2.2e+02 Score=29.37 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=36.9
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc--CCeEEEEeC
Q 017714 239 KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK--TNRLVTVEE 298 (367)
Q Consensus 239 ~di~Iia~G~~-v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~--~~~ivvvEe 298 (367)
.++.|+..+.. ...|++.++.|+++|+++.+. ... +.+ .+.+. .+.+ .+.++++.+
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd-~~~-~~l-~k~ik-~A~k~g~~~iviiG~ 460 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLV-LEP-KKL-KWVFK-HAERIGAKRLVLVGA 460 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEe-cCC-CCH-HHHHH-HHHHCCCCEEEEEch
Confidence 47788876644 568999999999999999763 332 333 23343 3443 456777765
No 413
>PRK13018 cell division protein FtsZ; Provisional
Probab=22.06 E-value=3.5e+02 Score=27.08 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=41.7
Q ss_pred eCCcEEEEEec----hhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHH----------HHHHHHhcCCeEEEEeCCC
Q 017714 237 EGKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS----------TINASVRKTNRLVTVEEGF 300 (367)
Q Consensus 237 ~g~di~Iia~G----~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~----------~l~~~~~~~~~ivvvEe~~ 300 (367)
++.|..+|+.| +....+--.++.+++.|+ -++.+ ...||..| .|.++.+..+.+++++...
T Consensus 111 e~~D~vfI~aGLGGGTGSGaapvIa~iake~g~--ltv~v-Vt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~ 185 (378)
T PRK13018 111 KGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGA--LVVGV-VTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNR 185 (378)
T ss_pred cCCCEEEEEeeccCcchhhHHHHHHHHHHHcCC--CeEEE-EEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHH
Confidence 57888888764 334555556677777664 34444 46799865 5666777788999998875
No 414
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=21.95 E-value=3.3e+02 Score=27.05 Aligned_cols=68 Identities=6% Similarity=-0.008 Sum_probs=38.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCC----CCCchHHHHHHHHH
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF----PQHGVGAEICASVI 314 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~----~~GGlg~~v~~~l~ 314 (367)
.++|++.|..-....+.+ ++.|++-.| ..+-..+.+.+.+.++..+..| +-... ..-|++--+.++++
T Consensus 255 ~l~ivG~G~~~~~l~~~~---~~~~l~~~V---~~~G~~~~~el~~~l~~aDv~v-~pS~~~~~g~~Eg~p~~llEAma 326 (406)
T PRK15427 255 RYRILGIGPWERRLRTLI---EQYQLEDVV---EMPGFKPSHEVKAMLDDADVFL-LPSVTGADGDMEGIPVALMEAMA 326 (406)
T ss_pred EEEEEECchhHHHHHHHH---HHcCCCCeE---EEeCCCCHHHHHHHHHhCCEEE-ECCccCCCCCccCccHHHHHHHh
Confidence 466777666544433332 333544222 2445677888888888887544 32211 12367888888886
No 415
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=21.85 E-value=4.2e+02 Score=26.20 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=47.6
Q ss_pred EEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHH-----------HHHHHhcC-CeEEEEeCCCCCCchHHHHH
Q 017714 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST-----------INASVRKT-NRLVTVEEGFPQHGVGAEIC 310 (367)
Q Consensus 243 Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~-----------l~~~~~~~-~~ivvvEe~~~~GGlg~~v~ 310 (367)
++=+|.....+.+++++|.++. .+..+-|||... +.+.+... +. |+|-=+ -|||-+-|+
T Consensus 123 Vil~g~~~dda~~~a~~~a~~~------G~~~i~pfD~p~viAGQGTi~lEileq~~~~~d~-v~vpvG--GGGLisGia 193 (347)
T COG1171 123 VILHGDNFDDAYAAAEELAEEE------GLTFVPPFDDPDVIAGQGTIALEILEQLPDLPDA-VFVPVG--GGGLISGIA 193 (347)
T ss_pred EEEECCCHHHHHHHHHHHHHHc------CCEEeCCCCCcceeecccHHHHHHHHhccccCCE-EEEecC--ccHHHHHHH
Confidence 4456888899999998886541 234678998652 23333333 44 444444 378888888
Q ss_pred HHHHHhccCCCCCCeEEEecCC
Q 017714 311 ASVIEESFGYLDAPVERIAGAD 332 (367)
Q Consensus 311 ~~l~~~~~~~~~~~v~~ig~~d 332 (367)
.++... .+.++-||++.
T Consensus 194 ~~~k~~-----~p~~~vIGVEp 210 (347)
T COG1171 194 TALKAL-----SPEIKVIGVEP 210 (347)
T ss_pred HHHHHh-----CCCCeEEEEee
Confidence 887653 33456666664
No 416
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=21.73 E-value=78 Score=29.11 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=15.0
Q ss_pred EEEechhHHHHHHHHHHHHhcCC
Q 017714 243 ITAFSKIVGLSLKAAEILAKEGI 265 (367)
Q Consensus 243 Iia~G~~v~~al~Aa~~L~~~Gi 265 (367)
|+|+|+++.++ ++.|++.|+
T Consensus 193 V~TTGaTl~~~---~~~L~~~Ga 212 (225)
T COG1040 193 VYTTGATLKEA---AKLLREAGA 212 (225)
T ss_pred ccccHHHHHHH---HHHHHHcCC
Confidence 45999999865 556888873
No 417
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.62 E-value=4.6e+02 Score=21.56 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=42.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhc-CCceEEEEeeecCCCCHHHHHHHHhc-CCeEEEEeCC
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEG 299 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~ivvvEe~ 299 (367)
+|+.+++=.....+.+.+-..+.+ --++.+|.++|.--+|.+.|.+.+.+ .+.|+++--+
T Consensus 1 kIl~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 1 KILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred CEEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 356666666666665555444332 34689999999999999999887765 6788886554
No 418
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=21.61 E-value=6.5e+02 Score=24.13 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=43.3
Q ss_pred eCCcEEEEEechh----HHHHHHHHHHHHhcCC-ceEEEEeeec-----------CCCCHHHHHHHHhc-CCeEEEEeCC
Q 017714 237 EGKDVTITAFSKI----VGLSLKAAEILAKEGI-SAEVINLRSI-----------RPLDRSTINASVRK-TNRLVTVEEG 299 (367)
Q Consensus 237 ~g~di~Iia~G~~----v~~al~Aa~~L~~~Gi-~v~vi~~~~i-----------~P~d~~~l~~~~~~-~~~ivvvEe~ 299 (367)
.|+|+.|+.+... +-+.+-..+.|++.|. ++++|=+..- -|+....+.+.+.. .++++++|-|
T Consensus 48 ~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~~~d~vit~DlH 127 (301)
T PRK07199 48 AGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSGSFDRLVTVDPH 127 (301)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHhhcCeEEEEecc
Confidence 3688999988643 4455667777887776 4666643221 26666666666654 6899999999
Q ss_pred C
Q 017714 300 F 300 (367)
Q Consensus 300 ~ 300 (367)
+
T Consensus 128 ~ 128 (301)
T PRK07199 128 L 128 (301)
T ss_pred c
Confidence 5
No 419
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=21.60 E-value=1e+02 Score=27.05 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=41.7
Q ss_pred chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHH
Q 017714 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 315 (367)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~ 315 (367)
|.+-..|...|..|++.|+.|++.|+..+.-+ .++++++||+ --....|-+-+.+-+++..
T Consensus 12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~-------~l~~ydavVI-gAsI~~~h~~~~~~~Fv~k 72 (175)
T COG4635 12 GQTRKIAEYIASHLRESGIQVDIQDLHAVEEP-------ALEDYDAVVI-GASIRYGHFHEAVQSFVKK 72 (175)
T ss_pred CcHHHHHHHHHHHhhhcCCeeeeeehhhhhcc-------ChhhCceEEE-ecchhhhhhHHHHHHHHHH
Confidence 55666777778889999999999998876432 2445677554 4445556676666666644
No 420
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.44 E-value=3.5e+02 Score=22.17 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=38.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcC-CceEEEEeeecCCCCHHHHHHHHhcCCeEEEEe
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~G-i~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvE 297 (367)
+-+.+.++++|.....|.+++-+|.+-+ +.+..++..-..--+.+ .+.+...+|++-
T Consensus 12 ~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~----~~~~~~~vi~is 69 (153)
T cd05009 12 EAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIA----LVDEGTPVIFLA 69 (153)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhh----hccCCCcEEEEe
Confidence 4567899999999999999998887764 67776655444333333 233344555554
No 421
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=21.42 E-value=2.1e+02 Score=24.90 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=33.8
Q ss_pred EEEEEechh----HHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEe
Q 017714 241 VTITAFSKI----VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (367)
Q Consensus 241 i~Iia~G~~----v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvE 297 (367)
++++|=|.. .....++++.++++|+.+-.|-+ -+.+.+.|.+.+...+..+.++
T Consensus 113 iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgi---g~~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 113 LLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAV---GSQNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred EEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEec---CccchHHHHHHHcCCcchhhhc
Confidence 445555532 23445677888888988777754 4478888877665554434433
No 422
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=21.37 E-value=2.2e+02 Score=25.08 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=29.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceE-EEEeeecCC
Q 017714 240 DVTITAFSKIVGLSLKAAEILAKEGISAE-VINLRSIRP 277 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~L~~~Gi~v~-vi~~~~i~P 277 (367)
...|++|......|.+.|..|+++|..+. |+=+.+.-|
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p 105 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPPP 105 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSST
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccCceEEecCCCC
Confidence 68899999999999999999999999774 443333334
No 423
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=21.27 E-value=4e+02 Score=23.84 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=37.2
Q ss_pred cEEEEEech-------hHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCC
Q 017714 240 DVTITAFSK-------IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (367)
Q Consensus 240 di~Iia~G~-------~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~ 299 (367)
+++|+..+. ....+.+.++.|++.|+.|.+ |.+.-+.+-.+.-..-.++...+|++-+.
T Consensus 12 qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~-D~r~~~s~g~K~~~ae~~GvP~~I~IG~~ 77 (202)
T cd00862 12 QVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHV-DDRDNYTPGWKFNDWELKGVPLRIEIGPR 77 (202)
T ss_pred eEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEE-ECCCCCCHhHHHHHHHhCCCCEEEEECcc
Confidence 566777653 456788888899999999987 66643244444322234456666666554
No 424
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=21.25 E-value=1.3e+02 Score=30.57 Aligned_cols=34 Identities=29% Similarity=0.266 Sum_probs=27.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
.+.+++||+.| ...+.||..|.+.|.+|.|++..
T Consensus 132 ~~~~V~IIG~G---~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAG---PAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEecC
Confidence 46789999988 34556788888899999999863
No 425
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.11 E-value=4.2e+02 Score=24.46 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCceEEEEeeecCC-CCHHHHHHHHhcCCeE--EEEeCC
Q 017714 253 SLKAAEILAKEGISAEVINLRSIRP-LDRSTINASVRKTNRL--VTVEEG 299 (367)
Q Consensus 253 al~Aa~~L~~~Gi~v~vi~~~~i~P-~d~~~l~~~~~~~~~i--vvvEe~ 299 (367)
..+..+.+++.|++++|. |+| =|.+.+...+...+.| ++||.+
T Consensus 97 ~~~~i~~Ik~~G~kaGla----lnP~T~~~~l~~~l~~vD~VLvMsV~PG 142 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLV----LNPETPVESIKYYIHLLDKITVMTVDPG 142 (229)
T ss_pred HHHHHHHHHHcCCCEEEE----eCCCCCHHHHHHHHHhcCEEEEEEEcCC
Confidence 345667778889999885 666 4567777778777764 444443
No 426
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=21.04 E-value=2.9e+02 Score=27.55 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=43.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCC-------------CCHHHHHHHHhcCCeEEEEeCCCC
Q 017714 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP-------------LDRSTINASVRKTNRLVTVEEGFP 301 (367)
Q Consensus 239 ~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P-------------~d~~~l~~~~~~~~~ivvvEe~~~ 301 (367)
+.+.||+-|........|+..| |+++.|+|+..=-| -|.+.+++++++++ +||.|=.++
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~l---G~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~D-ViT~EfE~V 73 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARL---GIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCD-VITYEFENV 73 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc---CCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCC-EEEEeeccC
Confidence 3478899888877776777777 99999999644333 14678899988886 799986654
No 427
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=20.78 E-value=6.2e+02 Score=26.73 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=74.9
Q ss_pred HHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccc-cHHHHHHHHH
Q 017714 49 EEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF-NFSMQAIDHI 127 (367)
Q Consensus 49 ~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~~~-~f~~ra~dqi 127 (367)
+|.+..-+=+++++-. +++ .++-. ..++ ++=-.-+=|+|-++.=+|.|+|++-.+|++-+..| +..--.|--|
T Consensus 17 eL~r~GV~~vvicPGS-RST---PLala-~~~~-~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~PAV 90 (566)
T COG1165 17 ELARLGVRDVVICPGS-RST---PLALA-AAAH-DAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYPAV 90 (566)
T ss_pred HHHHcCCcEEEECCCC-CCc---HHHHH-HHhc-CCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccHHH
Confidence 3444556667887622 222 22222 2344 44445577899999999999999988885543322 3333334444
Q ss_pred HHHHhhccccCCCCccccEEEEeCCCCCC--CCCCCchhHHH--HHHhcCCCcEEE--eeCCHHHHHHHHHH
Q 017714 128 INSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYA--AWYASVPGLKVL--SPYSSEDARGLLKA 193 (367)
Q Consensus 128 ~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tH~~~~~--a~~~~iP~~~V~--~P~d~~e~~~~~~~ 193 (367)
. .+.+ ..+|+++...|.+.. +-|.- |.++ .+|.+-|+..+= .|.+..++...+++
T Consensus 91 i-EA~~--------srvpLIVLTADRP~EL~~~GAn--QaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~ 151 (566)
T COG1165 91 I-EANL--------SRVPLIVLTADRPPELRGCGAN--QAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRT 151 (566)
T ss_pred H-hhhh--------cCCceEEEeCCCCHHHhcCCCc--hhhhhhhhhcccchhhccCCCCCCCHHHHHHHHH
Confidence 3 2433 589999998765432 33333 4433 688887765443 56666666655554
No 428
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=20.76 E-value=1.4e+02 Score=29.06 Aligned_cols=34 Identities=32% Similarity=0.283 Sum_probs=27.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 237 ~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
.+.+++||..| ...++|+..|.+.|.++.+++..
T Consensus 17 ~~~~VvIIG~G---~aGl~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAG---PAGLAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEeCC
Confidence 45789999998 45567888888899999999963
No 429
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=20.66 E-value=4.7e+02 Score=21.64 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=43.3
Q ss_pred cEEEEEechhHHHHHHHHHH----HHhc-CCceEEEEeeecCCCCHHHHHHHHh-cCCeEEEEeCCCCCCc-hHHHHHHH
Q 017714 240 DVTITAFSKIVGLSLKAAEI----LAKE-GISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGFPQHG-VGAEICAS 312 (367)
Q Consensus 240 di~Iia~G~~v~~al~Aa~~----L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~ivvvEe~~~~GG-lg~~v~~~ 312 (367)
-++|++-||--.++.+..+. ++++ ++.|.+=-+..-.|--.+.+.++.+ ..++|+|+-=--..|+ ....|-+.
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~Hv~~DiP~~ 81 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGNHVARDIMGE 81 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCCcchHHHHHHH
Confidence 37899999887777655444 4332 4454444343446766777777665 4568888843322221 33445555
Q ss_pred HHH
Q 017714 313 VIE 315 (367)
Q Consensus 313 l~~ 315 (367)
+.+
T Consensus 82 l~~ 84 (125)
T cd03415 82 LGV 84 (125)
T ss_pred HHh
Confidence 543
No 430
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=20.59 E-value=3.5e+02 Score=22.42 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=24.5
Q ss_pred EEEechhHH----HHHHHHHHHHhc-CCceEEEEeeecCCCCHHHHHHHHh--cCCeEEEEeC
Q 017714 243 ITAFSKIVG----LSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVR--KTNRLVTVEE 298 (367)
Q Consensus 243 Iia~G~~v~----~al~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~--~~~~ivvvEe 298 (367)
|+++|+... ....+++.|++. .-+++++|..+ -|++ .+ ..+. +.+++|+||-
T Consensus 2 VlGiGN~L~~DDgvG~~v~~~L~~~~~~~v~vid~gt-~~~~--~~-~~l~~~~~d~vIiVDA 60 (136)
T cd06067 2 LLGVGNELRGDDGAGPLLAEKLEDLPNPNWLVIDGGT-VPEN--FT-GKIREEKPDLIVIVDA 60 (136)
T ss_pred EEEeCccccccCcHHHHHHHHHHhcCCCCEEEEECCC-CHHH--HH-HHHHhcCCCEEEEEEC
Confidence 455555441 334455556543 22466666665 2222 11 2222 4556666654
No 431
>PLN02275 transferase, transferring glycosyl groups
Probab=20.58 E-value=7.1e+02 Score=24.08 Aligned_cols=106 Identities=7% Similarity=-0.081 Sum_probs=57.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecC-CCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHh
Q 017714 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR-PLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE 316 (367)
Q Consensus 238 g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~-P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~ 316 (367)
+-.++|++.|..-.+..+-+ ++.|++ .++ ++- .++.+.+.+.++..+..++.......-|++..+.++++.
T Consensus 261 ~i~l~ivG~G~~~~~l~~~~---~~~~l~-~v~---~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~- 332 (371)
T PLN02275 261 RLLFIITGKGPQKAMYEEKI---SRLNLR-HVA---FRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC- 332 (371)
T ss_pred CeEEEEEeCCCCHHHHHHHH---HHcCCC-ceE---EEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHC-
Confidence 34577888887665444433 334554 222 222 357788888888888655432222223688888888863
Q ss_pred ccCCCCCCeEEEecCCCCCCCHHHHHHH----hCCCHHHHHHHHHHHHh
Q 017714 317 SFGYLDAPVERIAGADVPMPYAANLERM----AVPQVLCFLYDSSIDGC 361 (367)
Q Consensus 317 ~~~~~~~~v~~ig~~d~~~~~~~~l~~~----~~l~~~~I~~~~i~~~l 361 (367)
..|+...... ...+..++. ...++++++++ +.+++
T Consensus 333 -----G~PVVa~~~g----g~~eiv~~g~~G~lv~~~~~la~~-i~~l~ 371 (371)
T PLN02275 333 -----GLPVCAVSYS----CIGELVKDGKNGLLFSSSSELADQ-LLELL 371 (371)
T ss_pred -----CCCEEEecCC----ChHHHccCCCCeEEECCHHHHHHH-HHHhC
Confidence 3455432111 111222211 11368888888 87764
No 432
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=20.55 E-value=4e+02 Score=29.57 Aligned_cols=68 Identities=7% Similarity=0.047 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhccccCCCCccccEEEEeCC-C-C-C-CC----CCCCch--hHHH----HHHhcCCCcEEEeeCCHHH
Q 017714 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-G-A-A-AG----VGAQHS--HCYA----AWYASVPGLKVLSPYSSED 186 (367)
Q Consensus 121 ~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G-~-~-~g----~G~tH~--~~~~----a~~~~iP~~~V~~P~d~~e 186 (367)
.|-|+|+.. ++.. -+.|++++=-+ + . + .+ .+..|. .... .+..+.|++.|+...++.|
T Consensus 644 gRL~~Q~~~-m~~~-------Y~~PvLLIE~d~~~~f~l~~~~~~~~~~~~~~~~i~~~L~~L~l~fP~l~IiwS~s~~~ 715 (814)
T TIGR00596 644 GRLYNQCEK-MLRY-------YAYPVLLIEFDQNKSFSLEPRNDLSQEISSVNNDIQQKLALLTLHFPKLRIIWSSSPYA 715 (814)
T ss_pred chHHHHHHH-HHHh-------cCCcEEEEEecCCcccccccccccccccCccHHHHHHHHHHHHHhcCCceEEecCCHHH
Confidence 488999864 4432 47899988322 1 1 1 01 233332 2222 4667799999999999999
Q ss_pred HHHHHHHhHc
Q 017714 187 ARGLLKAAIR 196 (367)
Q Consensus 187 ~~~~~~~a~~ 196 (367)
+..++.....
T Consensus 716 TA~i~~~Lk~ 725 (814)
T TIGR00596 716 TAEIFEELKL 725 (814)
T ss_pred HHHHHHHHHh
Confidence 9999987655
No 433
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=20.46 E-value=1.6e+02 Score=23.12 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=16.7
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 241 i~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
++|+++|..... .++.|.+.++++.+|+..
T Consensus 1 vvI~G~g~~~~~---i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGRE---IAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHH---HHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHH---HHHHHHhCCCEEEEEECC
Confidence 456677755544 344566666666666644
No 434
>PRK04148 hypothetical protein; Provisional
Probab=20.45 E-value=1.7e+02 Score=24.77 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEee
Q 017714 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (367)
Q Consensus 238 g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~ 273 (367)
+.+++.|++|.....| ..|.+.|.+|..+|..
T Consensus 17 ~~kileIG~GfG~~vA----~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIGFYFKVA----KKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEecCCHHHH----HHHHHCCCEEEEEECC
Confidence 4579999999655543 4577789999999875
No 435
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=20.36 E-value=2.8e+02 Score=27.86 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=29.1
Q ss_pred eCCcEEEEEe-----chhHHHHHHHHHHHHhcCCceEEEEeeecCCCCH
Q 017714 237 EGKDVTITAF-----SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR 280 (367)
Q Consensus 237 ~g~di~Iia~-----G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~ 280 (367)
+|.+++|+.. |.....+..-+..+..-|+++.++.++.+.|.+.
T Consensus 186 ~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~ 234 (395)
T PRK07200 186 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPE 234 (395)
T ss_pred CCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHH
Confidence 4567887754 6444434444444555699999999998877654
No 436
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=20.22 E-value=3.7e+02 Score=21.60 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=32.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeeecCCCCHHHHHHHHhc
Q 017714 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK 289 (367)
Q Consensus 239 ~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~ 289 (367)
-|++.|.-+.-=..+..+.-.|...| -+...+++-||.+..++.+++
T Consensus 56 YD~V~i~EapDda~~~~~~l~l~s~G----nvRt~TL~Afp~~~~~~~lkk 102 (104)
T COG4274 56 YDVVAIVEAPDDAVATRFSLALASRG----NVRTVTLRAFPVDAMLEILKK 102 (104)
T ss_pred ccEEEEEecCCHHHHHHHHHHHHhcC----CeEEEeeccCCHHHHHHHHhh
Confidence 45666666654445555555676665 567779999999998888765
No 437
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=20.17 E-value=2.7e+02 Score=29.77 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHhh
Q 017714 347 PQVLCFLYDSSIDGCY 362 (367)
Q Consensus 347 l~~~~I~~~~i~~~l~ 362 (367)
++-+++.+. +++.++
T Consensus 622 i~l~el~~~-l~~~~~ 636 (639)
T PRK12444 622 IELDMFVES-IKEEIK 636 (639)
T ss_pred eeHHHHHHH-HHHHhh
Confidence 456666666 665554
No 438
>PRK02948 cysteine desulfurase; Provisional
Probab=20.12 E-value=3.9e+02 Score=25.89 Aligned_cols=26 Identities=19% Similarity=0.019 Sum_probs=18.5
Q ss_pred CCHHHHHHHHhcCCeEEEEeCCCCCC
Q 017714 278 LDRSTINASVRKTNRLVTVEEGFPQH 303 (367)
Q Consensus 278 ~d~~~l~~~~~~~~~ivvvEe~~~~G 303 (367)
+|.+.|.+.+++++.++++|.-...|
T Consensus 155 ~~~~~I~~l~~~~~~~vivD~~~~~g 180 (381)
T PRK02948 155 QPIAEIGALLKKYNVLFHSDCVQTFG 180 (381)
T ss_pred hhHHHHHHHHHHcCCEEEEEChhhcc
Confidence 56778888888887777777644444
Done!