Query 017715
Match_columns 367
No_of_seqs 148 out of 259
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2608 Endoplasmic reticulum 100.0 5E-105 1E-109 792.8 16.7 322 21-363 2-356 (469)
2 PF04137 ERO1: Endoplasmic Ret 100.0 2.4E-95 5E-100 721.2 3.3 268 91-363 2-299 (357)
3 COG5061 ERO1 Oxidoreductin, en 100.0 2.7E-66 5.8E-71 503.7 7.4 267 71-363 22-312 (425)
4 PF15264 TSSC4: Tumour suppres 44.4 8.9 0.00019 33.3 0.5 12 203-214 58-69 (115)
5 PF13124 DUF3963: Protein of u 38.4 62 0.0013 22.9 3.8 29 261-289 7-36 (40)
6 PRK13159 cytochrome c-type bio 35.6 16 0.00034 33.4 0.7 56 21-76 7-62 (155)
7 PF13677 MotB_plug: Membrane M 34.0 33 0.00072 25.9 2.1 11 18-28 12-22 (58)
8 PF04282 DUF438: Family of unk 33.0 22 0.00047 28.4 1.0 21 338-358 11-31 (71)
9 PHA02450 hypothetical protein 31.3 13 0.00027 27.6 -0.5 24 203-229 4-27 (53)
10 PF14812 PBP1_TM: Transmembran 31.3 3.7 8.1E-05 33.6 -3.6 15 19-33 63-77 (81)
11 PRK13254 cytochrome c-type bio 28.7 25 0.00054 31.7 0.8 13 65-77 51-63 (148)
12 PRK12785 fliL flagellar basal 27.1 29 0.00064 31.5 1.0 34 1-34 1-36 (166)
13 COG2332 CcmE Cytochrome c-type 25.7 43 0.00092 30.6 1.7 58 20-77 6-63 (153)
14 KOG0910 Thioredoxin-like prote 22.0 57 0.0012 29.7 1.8 32 91-122 78-111 (150)
15 PRK08455 fliL flagellar basal 20.9 50 0.0011 30.6 1.3 7 1-7 1-7 (182)
16 PRK13717 conjugal transfer pro 20.2 82 0.0018 28.0 2.3 33 20-52 15-51 (128)
No 1
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-105 Score=792.80 Aligned_cols=322 Identities=43% Similarity=0.771 Sum_probs=292.0
Q ss_pred CcchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccCcccchHhHHhhhhhhhhHHHHhhh
Q 017715 21 GRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLV 100 (367)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~v~Dc~c~~etId~~N~~~l~p~L~~Lv 100 (367)
+||.|+++.+.++.+++ .++ +.|.. +.|||+ +.|+|+||+|+++|||++|+++|+|+|+.|+
T Consensus 2 ~r~~~l~~l~~~~~l~~-~v~-------~~~~~--~~~~ck--------~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~ 63 (469)
T KOG2608|consen 2 KRAIALLGLIAAVKLIS-VVN-------TQFAS--SICFCK--------VDGIIEDCTCDYETIDNLNNEVIYPLLQKLL 63 (469)
T ss_pred chhHHHHHHHHHHHHHH-hcc-------ccccc--cceeee--------cccccccCCCCHHHHHHhhccccchHHHHHh
Confidence 34888887777777777 454 11222 689999 6799999999999999999999999999999
Q ss_pred cCCcccEEeccCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CchhhccCCC-CcccccccchhhhcC
Q 017715 101 TTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPS-DDLMCQEGKP-EATVDRTLDKRAFRG 178 (367)
Q Consensus 101 ~t~fFRyfKVNL~~~CPFW~dd~~C~~~~C~V~~c~e~eiPe~wr~~~~~~~~-~~~~c~~~~~-~~~vd~tl~~~~~~~ 178 (367)
++||||||||||+++||||+|+++|++++|+|++|+|+|||++|+++.+++++ .-..|.++++ ++.+|++++.++|..
T Consensus 64 ksdffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~ 143 (469)
T KOG2608|consen 64 KSDFFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKSLGKYEPELCSECEDADSELGAKDRTLSDRAFLL 143 (469)
T ss_pred cccchhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhhhhccChhhhhhhhhccccccchhcccccccccc
Confidence 99999999999999999999999999999999999999999999986555554 2245555665 889999999899999
Q ss_pred ccccCCC-CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCC------C------CCCC-------
Q 017715 179 WIETDNP-WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWM------A------IVPA------- 238 (367)
Q Consensus 179 w~~~D~~-~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~------~------~~~C------- 238 (367)
|..+|+. ||..|+.++++++||||++||||||||+|++|+|||++||+||||++. . .++|
T Consensus 144 w~~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfY 223 (469)
T KOG2608|consen 144 WDKHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFY 223 (469)
T ss_pred ccccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHH
Confidence 9999997 899888888999999999999999999999999999999999999875 1 4788
Q ss_pred -----cCCCCCCCCCCC----CCC-CCCCChHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccCCCCccccH
Q 017715 239 -----NPQTRPNPPAKT----RPL-RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDL 308 (367)
Q Consensus 239 -----LHaSIsiHl~~~----~~~-~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvLRAl~Ka~p~L~~~~f~TG~~~eD~ 308 (367)
|||||+||||++ .++ .||||+++|+.||++||+||+||||+|++|+|||.||+|||++.+|+||+..||+
T Consensus 224 rLISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~ 303 (469)
T KOG2608|consen 224 RLISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDA 303 (469)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccch
Confidence 999999999995 444 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccCCCCCCccccCCCC-CCCchHHHHHHhhhhhhhccCCc
Q 017715 309 KTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQ-SGPELKQQIQEQFRNIRFRSEPE 363 (367)
Q Consensus 309 ~t~~lv~~Ll~~~~l~~scp~~FDE~~lF~~~-~a~~LKeeFr~~FrNISrIMD~~ 363 (367)
+|+.+|.+|++.++ +||.||||+.||+|+ .|++||||||+|||||||||||-
T Consensus 304 e~k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCV 356 (469)
T KOG2608|consen 304 ETKSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCV 356 (469)
T ss_pred HHHHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999876 699999999999999 78999999999999999999995
No 2
>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ].; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0050660 flavin adenine dinucleotide binding, 0006467 protein thiol-disulfide exchange, 0055114 oxidation-reduction process, 0005789 endoplasmic reticulum membrane; PDB: 1RQ1_A 1RP4_A 3NVJ_A 3M31_A 3AHR_A 3AHQ_A.
Probab=100.00 E-value=2.4e-95 Score=721.17 Aligned_cols=268 Identities=45% Similarity=0.842 Sum_probs=210.3
Q ss_pred hhhHHHHhhhcCCcccEEeccCCCCCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCccccc
Q 017715 91 VLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDD-GMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDR 169 (367)
Q Consensus 91 ~l~p~L~~Lv~t~fFRyfKVNL~~~CPFW~dd-~~C~~~~C~V~~c~e~eiPe~wr~~~~~~~~~~~~c~~~~~~~~vd~ 169 (367)
+|||+|++|+++||||||||||+++||||+++ ++|++++|+|++|+++|||+.||++.+.+.. ..|..++.+..++.
T Consensus 2 ~i~p~L~~L~~~~fFRyfKVnL~k~CpFW~dd~~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~--~~~~~~~~~~~~~~ 79 (357)
T PF04137_consen 2 KIFPLLQELVKTDFFRYFKVNLYKECPFWNDDNGMCGSRDCAVCECDENEIPEPWRAELSKLEQ--SACEEGSDQSDLDR 79 (357)
T ss_dssp CCHHHHHHHHCSCCCCEEEEESS---SSSSSSSS---TCCCBB-TSS-GGS-GGGSHHHTS--T--TTECCHCCHCSGGG
T ss_pred cchHHHHHHhCCCCeEEEeecCCCCCCCCCCcccCcCCCCCeeeeCChhhcCcccccccccccc--hhcccccchhhhcC
Confidence 58999999999999999999999999999998 9999999999999999999999982233322 23444444456777
Q ss_pred ccch-hhhcCccccCCC--CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCCC-------CCCC-
Q 017715 170 TLDK-RAFRGWIETDNP--WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMA-------IVPA- 238 (367)
Q Consensus 170 tl~~-~~~~~w~~~D~~--~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~-------~~~C- 238 (367)
+++. .++..|..+|+. ||..|++++++++||||++||||||||+|++|+|||++||+||||++.. +++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~c~~dd~~~~~~~YVDL~~NPEryTGY~G~~a~rIW~aIY~ENCF~~~~~~~~~~~~~~C~ 159 (357)
T PF04137_consen 80 TLSDCDEFCDWEDHDDSDDFCDLDDESSEEGVYVDLLLNPERYTGYSGPSAHRIWRAIYEENCFKPGSPSDPSWLDGMCL 159 (357)
T ss_dssp SBGHCCCCCCCHHCCCCTTHHHHTT---TTEEEEECCCS------B-CHHHHHHHHHHHCT--B-TTSTTH-------HC
T ss_pred ChhhhhhhcCccccccchhcCcCCCCCCCCceEEEcccCcccccCCCCCcHHHHHHHHHHHhCCCCCccccccccccccH
Confidence 7775 678889877652 7765555668999999999999999999999999999999999997653 3689
Q ss_pred -----------cCCCCCCCCCCC----CC---CCCCCChHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccC
Q 017715 239 -----------NPQTRPNPPAKT----RP---LRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYD 300 (367)
Q Consensus 239 -----------LHaSIsiHl~~~----~~---~~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvLRAl~Ka~p~L~~~~f~ 300 (367)
||||||||||++ .+ |.|+||+++|++|||+|||||+||||+|+||||||+||+|||.+++|+
T Consensus 160 EkrvfyrlISGlHaSIs~Hl~~~y~~~~~~~~g~w~pNl~~F~~R~g~~peRl~NLYF~y~~~lRAl~K~~p~l~~~~~~ 239 (357)
T PF04137_consen 160 EKRVFYRLISGLHASISIHLCAEYLNDETWEEGEWGPNLEEFMERFGEHPERLKNLYFTYLLVLRALAKAAPYLENYDFN 239 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEEECCTSS-EEEE--HHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCCHHHHHST---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCcccccccCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999 44 789999999999999999999999999999999999999999999999
Q ss_pred CCCccccHHHHHHHHHHhcCccccccCCCCCCccccCCCCCCCchHHHHHHhhhhhhhccCCc
Q 017715 301 TGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNIRFRSEPE 363 (367)
Q Consensus 301 TG~~~eD~~t~~lv~~Ll~~~~l~~scp~~FDE~~lF~~~~a~~LKeeFr~~FrNISrIMD~~ 363 (367)
||+..+|.+|+++|.+||+... +||.+|||+.||+++.+..||+|||+|||||||||||-
T Consensus 240 tg~~~eD~~t~~~l~~ll~~~~---~~~~~FdE~~lf~~~~~~~Lk~efr~~F~NIs~IMDCV 299 (357)
T PF04137_consen 240 TGNDEEDAETKKLLRDLLSSAK---SCPSHFDESSLFKGDEAPQLKEEFRQHFRNISRIMDCV 299 (357)
T ss_dssp STTSCCCCCHHHHHHHHHHCCH---HS-CCCGTTTTTTTTCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cCChhhhHHHHHHHHHHHHHHH---hccccCCHHHHcCCccHHHHHHHHHHHHhhHHHHHcCc
Confidence 9999999999999999999764 69999999999999999999999999999999999994
No 3
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.7e-66 Score=503.66 Aligned_cols=267 Identities=23% Similarity=0.430 Sum_probs=226.8
Q ss_pred cccccC-cccchHhHHhhhhhhhhHHHHhhhcCCcccEEeccCC-CCCCCCCC-CCCCCCCCCccccCCCCC-CCCCCCC
Q 017715 71 TGMVED-CCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLW-CDCPFWPD-DGMCRLRDCSVCECPENE-FPEPFKK 146 (367)
Q Consensus 71 ~G~v~D-c~c~~etId~~N~~~l~p~L~~Lv~t~fFRyfKVNL~-~~CPFW~d-d~~C~~~~C~V~~c~e~e-iPe~wr~ 146 (367)
.-+|.+ |+.++. |.++|.+ +.|+|-.|+++|||+||++||+ +.||||++ ++||.+++|+|..-+|.+ ||+.|+.
T Consensus 22 ~~iis~t~nss~~-i~~~ns~-vr~ll~~LteSDym~yyrlnLy~k~c~lw~ddn~mc~s~acnv~v~~e~d~vpkvW~~ 99 (425)
T COG5061 22 EIIISQTDNSSTG-IYQMNSK-VRSLLPVLTESDYMFYYRLNLYAKACTLWPDDNDMCVSKACNVTVRSEEDLVPKVWKD 99 (425)
T ss_pred hheecCcccccch-HHHHhhh-hhhhhHHhhhhhHHHHHHHHHHHhhCCCCCCcchhhhcccccceehhhhhcchhHhHh
Confidence 445655 667788 9999987 7999999999999999999999 79999998 589999999999999887 9999985
Q ss_pred CCCCCCC----CchhhccCCCCcccccccchhhhcCccccCCCCCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHH
Q 017715 147 PFHILPS----DDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWD 222 (367)
Q Consensus 147 ~~~~~~~----~~~~c~~~~~~~~vd~tl~~~~~~~w~~~D~~~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~ 222 (367)
.-+.... -++.|+..+ ..|..+|+.|.....+.+||||+.||||||||+|++|++||+
T Consensus 100 kls~f~ph~kkldq~c~~sk------------------~pd~~YCyvdn~~~~n~vyisLlenpErfTGY~g~hSa~IWr 161 (425)
T COG5061 100 KLSLFKPHSKKLDQFCSESK------------------CPDLSYCYVDNKSIFNDVYISLLENPERFTGYKGNHSAEIWR 161 (425)
T ss_pred hhhhhccchhhhhhcccccc------------------CCchhheeecCCCCCCcEEeehhcChHhhcCCCCCchHHHHH
Confidence 3222111 122333221 122346776666677899999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCC------------CcCCCCCCCCCCC----CCCCCCCChHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 017715 223 AVYTENCPKWMAIVP------------ANPQTRPNPPAKT----RPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286 (367)
Q Consensus 223 aIY~ENCF~~~~~~~------------CLHaSIsiHl~~~----~~~~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvLRA 286 (367)
.||+.|||.....+. -|||||+||+|.+ .+|.|+|||++|+.|||++||||.|+||+|++|-+|
T Consensus 162 ~Iyeqncfd~~~~p~~Lekr~FyRlvSGfhaSIsTHls~~yln~~~g~w~pNldlfrarvgnfpdRieN~yfnYalv~~a 241 (425)
T COG5061 162 KIYEQNCFDTLLPPTLLEKRMFYRLVSGFHASISTHLSSFYLNVFFGTWLPNLDLFRARVGNFPDRIENFYFNYALVRSA 241 (425)
T ss_pred HHHHhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceecCCHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 999999997543211 0999999999998 789999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccCCCCccccHHHHHHHHHHhcCccccccCCCCCCccccCCCCCCCchHHHHHHhhhhhhhccCCc
Q 017715 287 VTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNIRFRSEPE 363 (367)
Q Consensus 287 l~Ka~p~L~~~~f~TG~~~eD~~t~~lv~~Ll~~~~l~~scp~~FDE~~lF~~~~a~~LKeeFr~~FrNISrIMD~~ 363 (367)
|.|+.++|....||..+.. +++..|.+|++.+. +-|..|||.++|+++.+..||++||+|||||||||||-
T Consensus 242 l~kI~~~l~sftFC~~~~~---e~~~k~~~lis~i~---~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcV 312 (425)
T COG5061 242 LGKIDVDLSSFTFCPTDKD---ELSGKLSSLISAIR---AQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCV 312 (425)
T ss_pred HHhhccCCcccccCCccHH---HHHhHHHHHHHHHH---hccccccceecccCccchhhhHHHHHHHHhHHHHHHhc
Confidence 9999999999999965422 89999999998643 56789999999999999999999999999999999984
No 4
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=44.37 E-value=8.9 Score=33.29 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCC
Q 017715 203 LLNPERYTGYTG 214 (367)
Q Consensus 203 l~NPERyTGY~G 214 (367)
++||||||-|+=
T Consensus 58 v~nP~KwTkYSL 69 (115)
T PF15264_consen 58 VRNPEKWTKYSL 69 (115)
T ss_pred cCCcccceeeec
Confidence 499999999984
No 5
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=38.44 E-value=62 Score=22.88 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.2
Q ss_pred HHHHH-HhhhhhhhhhHHHHHHHHHHHHHH
Q 017715 261 LMYDR-VLRYQDRVRNLYFTFLFVLRAVTK 289 (367)
Q Consensus 261 ~F~~R-v~~~PeRL~NLYF~YllvLRAl~K 289 (367)
-|.+| +..-..+|+|+-|.++++.-+|..
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777 345678999999999988777653
No 6
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=35.58 E-value=16 Score=33.37 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=30.9
Q ss_pred CcchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccC
Q 017715 21 GRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVED 76 (367)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~v~D 76 (367)
+|..+++++++++.+|++.+.+--...++.|-.+++-=-=....+...++-|.|..
T Consensus 7 rRl~~v~~~~~~~~~a~~Lv~~al~~n~~yF~tpsEv~~~~~~~~~~~RlGG~V~~ 62 (155)
T PRK13159 7 QRLWLVIGVLTAAALAVTLIVLALQRNMSYLFTPSQVRAGAAAGYQQFRLGGMVKA 62 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCceEEECHHHHhcCCcccCCeEEEccEEec
Confidence 45555666666666666555554555677776655411111123466677787764
No 7
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=33.96 E-value=33 Score=25.93 Aligned_cols=11 Identities=27% Similarity=0.093 Sum_probs=5.8
Q ss_pred ccCCcchHHHH
Q 017715 18 KGLGRGLWSVW 28 (367)
Q Consensus 18 ~~~~~~~~~~~ 28 (367)
.+.++|.-.-+
T Consensus 12 ~~~~~Wlvtya 22 (58)
T PF13677_consen 12 EGSPRWLVTYA 22 (58)
T ss_pred CCCccHHHHHH
Confidence 44667754433
No 8
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=33.01 E-value=22 Score=28.43 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=18.1
Q ss_pred CCCCCCchHHHHHHhhhhhhh
Q 017715 338 QGQSGPELKQQIQEQFRNIRF 358 (367)
Q Consensus 338 ~~~~a~~LKeeFr~~FrNISr 358 (367)
+|.+-.++|++|+..|.+||.
T Consensus 11 ~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 11 EGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred CCCCHHHHHHHHHHHHCCCCH
Confidence 466668899999999999985
No 9
>PHA02450 hypothetical protein
Probab=31.35 E-value=13 Score=27.63 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCChhhhHHHHHhhcC
Q 017715 203 LLNPERYTGYTGPSARRIWDAVYTENC 229 (367)
Q Consensus 203 l~NPERyTGY~G~~A~rIW~aIY~ENC 229 (367)
..|||.||-|.|. -+--.||.=+-
T Consensus 4 ~in~egf~ryggd---c~cg~iyty~g 27 (53)
T PHA02450 4 EINPEGFTRYGGD---CTCGPIYTYGG 27 (53)
T ss_pred ccCcccceeeCCc---ccccceeeeCC
Confidence 3699999999998 57777876653
No 10
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=31.28 E-value=3.7 Score=33.62 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=4.3
Q ss_pred cCCcchHHHHHHHHH
Q 017715 19 GLGRGLWSVWAVIVV 33 (367)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (367)
..++|.|+++.|++|
T Consensus 63 kKrrwlwLlikl~lV 77 (81)
T PF14812_consen 63 KKRRWLWLLIKLFLV 77 (81)
T ss_dssp --------TTTTHCC
T ss_pred ccchhHHHHHHHHHH
Confidence 345677776665555
No 11
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.66 E-value=25 Score=31.71 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=9.2
Q ss_pred CCCccccccccCc
Q 017715 65 QDSVKYTGMVEDC 77 (367)
Q Consensus 65 ~~~~~~~G~v~Dc 77 (367)
++..++.|.|.+=
T Consensus 51 g~~vrvgG~V~~g 63 (148)
T PRK13254 51 GRRFRLGGLVEKG 63 (148)
T ss_pred CCeEEEeEEEecC
Confidence 4667888888653
No 12
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.12 E-value=29 Score=31.46 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=15.8
Q ss_pred Cccccccch-hhhHHHHh-ccCCcchHHHHHHHHHH
Q 017715 1 MAKDKKRND-QISKEKKK-KGLGRGLWSVWAVIVVL 34 (367)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 34 (367)
||++++.|. +-.++.++ ++.++..++++++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~kkk~liii~~~~lll 36 (166)
T PRK12785 1 MAKKPKKAPAAEGGEGAAPPKKKKKLIIIAAAAVLL 36 (166)
T ss_pred CCCCcccccccccccccCCCCCcceEeeHHHHHHHH
Confidence 777666654 33333333 33444444444333333
No 13
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=43 Score=30.58 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccCc
Q 017715 20 LGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDC 77 (367)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~v~Dc 77 (367)
++||.-+++++.++.+|+.-+..--...|.+|-.+++.=.=+...++..++-|.|+.=
T Consensus 6 r~Rl~~il~~~a~l~~a~~l~Lyal~~ni~~fy~Psel~~~~~~~G~rlR~GGlV~~G 63 (153)
T COG2332 6 RKRLWIILAGLAGLALAVGLVLYALRSNIDYFYTPSELLEGKVETGQRLRLGGLVEAG 63 (153)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccCceEEECHHHhccccccCCcEEEEeeeEeec
Confidence 4455444445544445543344444566888877665333334456777888888764
No 14
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.98 E-value=57 Score=29.67 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=27.0
Q ss_pred hhhHHHHhhhc--CCcccEEeccCCCCCCCCCCC
Q 017715 91 VLHPLLQQLVT--TPFFRYFKAKLWCDCPFWPDD 122 (367)
Q Consensus 91 ~l~p~L~~Lv~--t~fFRyfKVNL~~~CPFW~dd 122 (367)
-|.|+|++|+. ..=|++||||-+..=.+|.+-
T Consensus 78 ~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y 111 (150)
T KOG0910|consen 78 MLGPILEELVSEYAGKFKLYKVDTDEHPELAEDY 111 (150)
T ss_pred HhhHHHHHHHHhhcCeEEEEEEccccccchHhhc
Confidence 37899999995 789999999999887777753
No 15
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.94 E-value=50 Score=30.58 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=4.0
Q ss_pred Ccccccc
Q 017715 1 MAKDKKR 7 (367)
Q Consensus 1 ~~~~~~~ 7 (367)
||++.+.
T Consensus 1 MAee~~~ 7 (182)
T PRK08455 1 MAEEQEN 7 (182)
T ss_pred CCcchhh
Confidence 7765543
No 16
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=20.25 E-value=82 Score=27.99 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=20.5
Q ss_pred CCcchHHHHHHHHHHHHhhhhhc----ccCCcccccc
Q 017715 20 LGRGLWSVWAVIVVLFATAAVTT----RTGSKIALFA 52 (367)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 52 (367)
.+.|.|.+++++..+++.|++|+ ...|.+-.|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~a~~s~~~~~~~~P~iV~FD 51 (128)
T PRK13717 15 RSHWWWTVPGCLAMVLLNAAVSYGIVRLNAPVTAAFN 51 (128)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 34488888877777666654443 3456665553
Done!