BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017716
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 131/251 (52%), Gaps = 27/251 (10%)
Query: 67 LAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHL 122
LA A GFG +GG G Y VT+ D+ PG+LR G ++ LWI+F + I L
Sbjct: 21 LADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKL 80
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVII-------CNLEFEG-------- 165
+ L V+ +KTIDGRG V L G L +++ HVI+ CN G
Sbjct: 81 KMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESI 140
Query: 166 GKGP----DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
G P D DAI ++ + WID SL D DGLID+T ST IT+S HF +H K M
Sbjct: 141 GVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVM 199
Query: 222 LIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
L+G D ++ D+ ++VT+ + F QR PR RY VH+ NN W IYA+ S +
Sbjct: 200 LLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNP 259
Query: 281 QIYSQCNIYEA 291
I S+ N + A
Sbjct: 260 TILSEGNSFTA 270
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 125/276 (45%), Gaps = 55/276 (19%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
R + V S +I G G+ K+ G G +K ++VII N+EFE G
Sbjct: 125 RIMVYVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGE 184
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV 209
+ D+I I+ S HIWID + D D DG +DI S IT+
Sbjct: 185 WNSEYDSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITI 243
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
S F++HDK LIGA S +AD +RVT+HH ++ QR PRVR+ +VH+YNNY
Sbjct: 244 SYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEF 303
Query: 269 WGI------YAVCASVDSQIYSQCN------------IYEAGQKKMAFKYLTEKASDKEE 310
+ YA V SQIY+Q N I + K Y T D
Sbjct: 304 SNLADYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPSLIIKVWSKNEESMYETGTIVDLPN 363
Query: 311 AR--TDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPS 344
R D + S + ++L+LK + + +++ HP+
Sbjct: 364 GRRYIDLVASYNESNTLQLKKEVTWKPMFYHVIHPT 399
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 34/243 (13%)
Query: 79 IGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--RSHLSVSSYKTIDG 136
+GGL G + V T + + EG V V GTI + + V S KTI G
Sbjct: 22 VGGLGGEIVFVRTAEELEKYTTAEGKY-------VIVVDGTIVFEPKREIKVLSDKTIVG 74
Query: 137 RGQRVKLTGKGLRLKECEHVIICNLEFEG--------GKGPDVDAIQIKPKSKHIWIDRC 188
K+ G GL +K+ ++VII N+ FEG GK D D I ++ S HIWID
Sbjct: 75 I-NDAKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVE-NSHHIWIDHI 132
Query: 189 SLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA----DPSHVADRCIRVTIHHCFF 244
+ + +DG +DI + S ITVS F HDK L+G+ DP A + +VT HH +F
Sbjct: 133 TFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKEDPEQ-AGQAYKVTYHHNYF 191
Query: 245 DGTRQRHPRVRYAKVHLYNNY----------TRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
QR PR+R+ H++NN+ + IY V +++ ++++ + N +
Sbjct: 192 KNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGAKVHVEGNYFMGYGA 251
Query: 295 KMA 297
MA
Sbjct: 252 VMA 254
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 133 TIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSL-- 190
+I G G + G G+RL ++II N+ + + AI++ SK++WID
Sbjct: 82 SIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYS 141
Query: 191 -------RDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG-ADPSHVADRCIRVTIHHC 242
DY DGL+D+ R + ITVS F +H KTML+G D + +A ++T HH
Sbjct: 142 EFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPD--KITYHHN 199
Query: 243 FFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYE 290
+F+ R P +RYA VH++NNY ++ A+ + V ++++ + N ++
Sbjct: 200 YFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFD 247
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
R + + + TI G G K+ G ++K ++VII N+EF+ G
Sbjct: 141 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 199
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
D I I + HIWID C+ D + DG D + + IT+
Sbjct: 200 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 258
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
S ++ HDK+ + G+ S +D +++T+HH + QR PRVR+ +VH+YNNY
Sbjct: 259 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 318
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
+ WGI S+IY+Q N+ +
Sbjct: 319 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 347
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PD 170
RS +S+ S TI G G K T L +K ++VI+ NL +E G G +
Sbjct: 73 RSQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAE 132
Query: 171 VDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCH 213
DA I S ++W+D ++ D DG +DI + S +T+S
Sbjct: 133 WDAAVID-NSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSR 191
Query: 214 FSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
F HDKT+LIG S+ + +RVT H+ FD +R PRVR+ +H YNN
Sbjct: 192 FELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNN 244
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
R + + + TI G G K+ G ++K ++VII N+EF+ G
Sbjct: 141 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 199
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
D I I + HIWID C+ D + DG D + + IT+
Sbjct: 200 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 258
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
S ++ HDK+ + G+ S +D +++T+HH + Q+ PRVR+ +VH+YNNY
Sbjct: 259 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEG 318
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
+ WGI S+IY+Q N+ +
Sbjct: 319 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 347
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
R + + + TI G G K+ G ++K ++VII N+EF+ G
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTAGSSGN 178
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
D I I + HIWID C+ D + DG D + + IT+
Sbjct: 179 WASQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
S ++ HD + + G+ S +D +++T+HH + QR PRVR+ +VH+YNNY
Sbjct: 238 SYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 297
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
+ WGI S+IY+Q N+ +
Sbjct: 298 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 326
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
R + + + TI G G K+ G ++K ++VII N+EF+ G
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 178
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
D I I + HIWID C+ D + DG D + + IT+
Sbjct: 179 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
S ++ HDK+ + G+ S +D +++T+HH + Q PRVR+ +VH+YNNY
Sbjct: 238 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEG 297
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
+ WGI S+IY+Q N+ +
Sbjct: 298 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 326
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 54/227 (23%)
Query: 86 LYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--------------RSHLSVSSY 131
+Y VT +++ +L G K + ++ GTI + RS +++ +
Sbjct: 35 IYIVTNISE-FTSALSAGAEAK-----IIQIKGTIDISGGTPYTDFADQKARSQINIPAN 88
Query: 132 KTIDGRGQRVKLTGKGLRLKECE---HVIICNL----------EFEGGKG--PDVDAIQI 176
T+ G G K L + + +VII N+ +E G G + DA+ I
Sbjct: 89 TTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNI 148
Query: 177 KPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSSHDK 219
+ H+WID ++ D + DG +DI R S +T+S HDK
Sbjct: 149 TNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDK 208
Query: 220 TMLIG-ADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
TMLIG D + D+ + VT+ + F+ +R PRVRY +H +NN
Sbjct: 209 TMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 255
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 54/227 (23%)
Query: 86 LYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--------------RSHLSVSSY 131
+Y VT +++ +L G K + ++ GTI + RS +++ +
Sbjct: 35 IYIVTNISE-FTSALSAGAEAK-----IIQIKGTIDISGGTPYTDFADQKARSQINIPAN 88
Query: 132 KTIDGRGQRVKLTGKGLRLKECE---HVIICNL----------EFEGGKG--PDVDAIQI 176
T+ G G K L + + +VII N+ +E G G + DA+ I
Sbjct: 89 TTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNI 148
Query: 177 KPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSSHDK 219
+ H+WID ++ D + DG +DI R S +T+S HDK
Sbjct: 149 TNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDK 208
Query: 220 TMLIG-ADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
TMLIG +D + D+ + VT+ + F+ +R PRVRY +H +NN
Sbjct: 209 TMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 255
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
G+R+ H VII N+ +GG+ D D+I ++ S IW+D +CS
Sbjct: 87 GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
D DG ID+ + +TVS + ++ K L G S + R T HH F+
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
R P R+ H+YNNY N
Sbjct: 205 ESRVPLQRFGLSHIYNNYFNN 225
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
G+R+ H VII N+ +GG+ D D+I ++ S IW+D +CS
Sbjct: 87 GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
D DG ID+ + +TVS + ++ K L G S + R T HH F+
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
R P R+ H+YNNY N
Sbjct: 205 ESRVPLQRFGLSHIYNNYFNN 225
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
G+R+ H VII N+ +GG+ D D+I ++ S IW+D +CS
Sbjct: 87 GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
D DG ID+ + +TVS + ++ K L G S + R T HH F+
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
R P R H+YNNY N
Sbjct: 205 ESRVPLQRRGLSHIYNNYFNN 225
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 147 GLRLKECEHVIICNLE--FEGGKGPDVDAIQIKPKSKHIWIDRCSL----------RDYD 194
G+ +K+ V++ N+ + G D D I++ S ++W+D L D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 195 ---DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH 251
+ +DI S +TVS + K +G D S +D +T HH +++ R
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNARL 219
Query: 252 PRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
P R VH YNN N + + Q + N +E + +Y
Sbjct: 220 PLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRY 268
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 147 GLRLKECEHVIICNLE--FEGGKGPDVDAIQIKPKSKHIWIDRCSL----------RDYD 194
G+ +K+ V++ N+ + G D D I++ S ++W+D L D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 195 ---DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH 251
+ +DI S +TVS + K +G D S +D +T HH +++ +
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNAKL 219
Query: 252 PRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
P R VH YNN N + + Q + N +E + +Y
Sbjct: 220 PLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRY 268
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 39/149 (26%)
Query: 126 LSVSSYKTIDGRGQRVKLTGKGLRLKE-CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIW 184
++V+S K+I G+G + + GKGLR+ ++VII N+ I P K++W
Sbjct: 104 ITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVT----------DINP--KYVW 151
Query: 185 -IDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCF 243
D ++ D D ID T + R H +++G + RVTI +
Sbjct: 152 GGDAITVDDSDLVWID---HVTTARIGRQH-------IVLGTSADN------RVTISYSL 195
Query: 244 FDGTRQRHPRVRYAKVHLYNNYTRNWGIY 272
DG R Y+ ++Y WG+Y
Sbjct: 196 IDG------RSDYSATCNGHHY---WGVY 215
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 78 AIGGLHGPLYHVTTLADDGPGSLREG 103
A G ++ P+Y +T A DG G LR G
Sbjct: 32 ATGAVNAPIYASSTFAQDGVGGLRGG 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,482,703
Number of Sequences: 62578
Number of extensions: 470972
Number of successful extensions: 1031
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 20
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)