Query 017716
Match_columns 367
No_of_seqs 232 out of 975
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.8E-61 4E-66 461.9 26.0 282 63-360 27-342 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1.5E-52 3.4E-57 386.7 13.2 177 112-289 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.4E-48 3.1E-53 357.8 19.9 168 124-292 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.2 1.6E-09 3.5E-14 106.9 20.1 110 100-216 1-127 (314)
5 PF14592 Chondroitinas_B: Chon 98.9 1E-08 2.3E-13 104.3 13.1 193 89-291 1-256 (425)
6 TIGR03808 RR_plus_rpt_1 twin-a 98.4 1.7E-05 3.7E-10 81.5 17.3 113 98-216 55-177 (455)
7 PF13229 Beta_helix: Right han 98.2 2.5E-05 5.4E-10 66.5 12.7 134 147-294 2-139 (158)
8 PLN02218 polygalacturonase ADP 98.2 0.00012 2.7E-09 75.5 19.2 100 152-255 222-323 (431)
9 PF12708 Pectate_lyase_3: Pect 98.2 9.7E-05 2.1E-09 67.1 16.0 174 99-293 20-221 (225)
10 PLN02218 polygalacturonase ADP 98.1 4.6E-05 9.9E-10 78.6 14.3 161 125-299 157-352 (431)
11 TIGR03805 beta_helix_1 paralle 98.1 0.00024 5.1E-09 70.4 18.5 153 129-295 62-245 (314)
12 PLN02793 Probable polygalactur 98.1 0.00012 2.7E-09 75.7 16.9 103 148-254 203-307 (443)
13 PLN03003 Probable polygalactur 98.1 0.00011 2.3E-09 76.3 16.3 103 149-255 165-269 (456)
14 PLN02155 polygalacturonase 98.0 8.1E-05 1.8E-09 76.0 12.5 102 149-254 172-275 (394)
15 PLN03003 Probable polygalactur 97.9 0.00051 1.1E-08 71.4 17.5 138 148-299 141-298 (456)
16 PLN02188 polygalacturonase/gly 97.9 0.00016 3.5E-09 74.0 13.8 97 149-248 182-280 (404)
17 PLN03010 polygalacturonase 97.9 0.0015 3.2E-08 67.2 20.3 113 153-269 188-305 (409)
18 PLN02480 Probable pectinestera 97.9 0.0016 3.4E-08 65.5 19.2 97 99-198 62-182 (343)
19 PF07602 DUF1565: Protein of u 97.8 0.0011 2.4E-08 63.7 16.6 119 99-220 17-166 (246)
20 PF13229 Beta_helix: Right han 97.7 0.0004 8.6E-09 59.1 11.0 129 147-289 25-158 (158)
21 COG3420 NosD Nitrous oxidase a 97.7 0.0016 3.4E-08 65.0 16.4 133 116-254 39-195 (408)
22 PLN03010 polygalacturonase 97.7 0.0025 5.5E-08 65.5 18.0 155 130-299 139-317 (409)
23 PF00295 Glyco_hydro_28: Glyco 97.7 0.00021 4.4E-09 71.0 9.5 105 147-255 117-223 (326)
24 PLN02155 polygalacturonase 97.7 0.0019 4E-08 66.2 16.3 138 148-299 148-306 (394)
25 PF05048 NosD: Periplasmic cop 97.6 0.0021 4.5E-08 60.1 15.3 105 147-266 59-165 (236)
26 PLN02197 pectinesterase 97.6 0.0014 3E-08 70.2 15.6 150 61-215 250-443 (588)
27 PF01696 Adeno_E1B_55K: Adenov 97.6 0.0035 7.6E-08 63.7 17.0 183 85-293 47-241 (386)
28 PF05048 NosD: Periplasmic cop 97.6 0.0014 3.1E-08 61.2 13.3 131 145-291 35-167 (236)
29 PLN02793 Probable polygalactur 97.6 0.0031 6.8E-08 65.4 16.7 138 148-299 180-337 (443)
30 PF00295 Glyco_hydro_28: Glyco 97.5 0.00085 1.9E-08 66.6 11.8 133 148-298 95-251 (326)
31 PLN02188 polygalacturonase/gly 97.5 0.0038 8.3E-08 64.1 16.4 138 148-299 158-317 (404)
32 PLN02176 putative pectinestera 97.4 0.0019 4.1E-08 64.9 12.8 104 93-199 44-174 (340)
33 TIGR03808 RR_plus_rpt_1 twin-a 97.2 0.0049 1.1E-07 63.8 12.9 162 132-294 122-369 (455)
34 PLN02416 probable pectinestera 97.2 0.023 4.9E-07 60.5 17.9 121 93-216 235-397 (541)
35 PLN02773 pectinesterase 97.0 0.047 1E-06 54.5 17.5 114 99-215 19-181 (317)
36 PLN02217 probable pectinestera 97.0 0.037 8.1E-07 60.2 17.8 197 93-293 255-516 (670)
37 PLN02170 probable pectinestera 97.0 0.0078 1.7E-07 63.7 12.3 120 93-215 230-392 (529)
38 PLN02432 putative pectinestera 97.0 0.009 1.9E-07 58.9 12.0 111 99-215 25-152 (293)
39 PLN02488 probable pectinestera 97.0 0.049 1.1E-06 57.4 18.0 152 93-248 202-400 (509)
40 smart00656 Amb_all Amb_all dom 97.0 0.016 3.6E-07 53.4 13.0 132 130-269 45-189 (190)
41 PLN02933 Probable pectinestera 97.0 0.059 1.3E-06 57.2 18.5 121 92-215 222-384 (530)
42 PLN02497 probable pectinestera 96.8 0.1 2.2E-06 52.4 18.0 98 99-199 46-168 (331)
43 PLN02304 probable pectinestera 96.8 0.02 4.4E-07 58.3 13.2 116 94-215 81-226 (379)
44 PLN02708 Probable pectinestera 96.8 0.01 2.2E-07 63.3 11.5 120 93-215 246-409 (553)
45 PLN03043 Probable pectinestera 96.8 0.069 1.5E-06 56.9 17.4 148 95-246 230-427 (538)
46 PLN02995 Probable pectinestera 96.8 0.016 3.5E-07 61.6 12.7 104 93-199 228-358 (539)
47 PLN02301 pectinesterase/pectin 96.8 0.0078 1.7E-07 64.0 10.0 120 93-215 241-402 (548)
48 PLN02682 pectinesterase family 96.7 0.021 4.5E-07 58.1 12.5 111 99-215 84-227 (369)
49 PLN02665 pectinesterase family 96.7 0.099 2.1E-06 53.2 17.4 98 99-199 82-205 (366)
50 PLN02201 probable pectinestera 96.7 0.014 2.9E-07 61.8 11.3 120 93-215 211-372 (520)
51 PLN02990 Probable pectinestera 96.7 0.021 4.6E-07 61.1 12.5 120 93-215 264-426 (572)
52 PLN02314 pectinesterase 96.6 0.017 3.6E-07 62.1 11.3 120 93-215 283-444 (586)
53 PLN02506 putative pectinestera 96.6 0.085 1.8E-06 56.2 16.4 115 99-216 246-399 (537)
54 PLN02745 Putative pectinestera 96.6 0.019 4.1E-07 61.7 11.7 120 93-215 290-451 (596)
55 PLN02713 Probable pectinestera 96.6 0.021 4.6E-07 61.0 11.7 120 93-215 255-419 (566)
56 COG5434 PGU1 Endopygalactoruna 96.5 0.029 6.3E-07 59.6 12.3 101 147-254 263-375 (542)
57 PLN02468 putative pectinestera 96.4 0.024 5.2E-07 60.7 11.3 118 95-215 265-424 (565)
58 PLN02313 Pectinesterase/pectin 96.4 0.018 3.9E-07 61.8 10.3 121 93-216 280-442 (587)
59 PLN02484 probable pectinestera 96.2 0.04 8.6E-07 59.2 11.5 121 93-215 277-439 (587)
60 PF01095 Pectinesterase: Pecti 96.1 0.038 8.2E-07 54.6 10.0 110 99-216 14-147 (298)
61 PLN02634 probable pectinestera 96.1 0.085 1.8E-06 53.5 12.6 98 99-199 70-200 (359)
62 PLN02916 pectinesterase family 96.1 0.053 1.1E-06 57.2 11.3 114 99-215 201-356 (502)
63 PF12708 Pectate_lyase_3: Pect 95.8 0.028 6.1E-07 50.9 7.2 104 131-248 98-221 (225)
64 COG3866 PelB Pectate lyase [Ca 95.7 0.22 4.8E-06 49.5 13.1 125 131-269 131-276 (345)
65 PLN02671 pectinesterase 95.6 0.2 4.2E-06 50.9 12.6 111 99-215 73-217 (359)
66 PF00544 Pec_lyase_C: Pectate 95.6 0.18 3.8E-06 46.9 11.4 127 131-266 52-200 (200)
67 PRK10531 acyl-CoA thioesterase 95.5 0.19 4.1E-06 52.1 12.5 98 99-199 96-256 (422)
68 COG3420 NosD Nitrous oxidase a 94.5 0.86 1.9E-05 46.1 13.3 89 125-217 99-193 (408)
69 PF08480 Disaggr_assoc: Disagg 94.4 0.72 1.6E-05 42.9 11.6 88 205-293 2-110 (198)
70 COG5434 PGU1 Endopygalactoruna 92.9 0.48 1E-05 50.6 9.0 135 107-248 236-399 (542)
71 PF14592 Chondroitinas_B: Chon 91.0 0.53 1.1E-05 48.8 6.5 34 237-270 247-284 (425)
72 COG4677 PemB Pectin methyleste 83.3 16 0.00036 37.0 11.5 146 98-255 95-294 (405)
73 PF12541 DUF3737: Protein of u 82.7 7.4 0.00016 38.2 8.6 64 152-227 17-80 (277)
74 PLN02698 Probable pectinestera 76.4 9.9 0.00021 40.4 8.0 69 146-215 263-349 (497)
75 TIGR03804 para_beta_helix para 72.0 6.3 0.00014 27.2 3.6 40 173-215 1-40 (44)
76 PF12541 DUF3737: Protein of u 68.3 29 0.00062 34.2 8.4 30 236-268 195-224 (277)
77 PF03211 Pectate_lyase: Pectat 60.0 64 0.0014 30.8 8.9 68 148-223 57-125 (215)
78 PF01696 Adeno_E1B_55K: Adenov 54.8 81 0.0018 32.6 9.3 80 203-292 119-200 (386)
79 PF07602 DUF1565: Protein of u 54.7 66 0.0014 31.2 8.2 129 129-290 96-240 (246)
80 PF08480 Disaggr_assoc: Disagg 54.5 74 0.0016 29.9 8.1 73 179-251 32-113 (198)
81 TIGR03804 para_beta_helix para 47.5 41 0.00089 23.0 4.2 41 147-192 1-41 (44)
82 KOG1924 RhoA GTPase effector D 43.2 24 0.00053 39.6 3.6 20 235-254 859-878 (1102)
83 PF03718 Glyco_hydro_49: Glyco 40.4 1.6E+02 0.0034 32.0 8.9 92 147-244 345-443 (582)
84 PF06355 Aegerolysin: Aegeroly 36.9 1.4E+02 0.003 26.1 6.8 59 153-212 14-88 (131)
85 smart00710 PbH1 Parallel beta- 26.4 93 0.002 17.6 2.9 14 182-195 3-16 (26)
86 PRK03174 sspH acid-soluble spo 23.5 59 0.0013 24.8 1.9 19 172-190 14-32 (59)
87 cd06401 PB1_TFG The PB1 domain 22.2 77 0.0017 25.8 2.4 26 83-113 52-77 (81)
88 COG5178 PRP8 U5 snRNP spliceos 22.1 58 0.0013 38.4 2.2 18 87-104 75-93 (2365)
89 smart00722 CASH Domain present 22.0 4.2E+02 0.0091 21.5 7.1 43 148-193 40-88 (146)
90 KOG2675 Adenylate cyclase-asso 20.7 59 0.0013 34.2 1.8 21 193-213 361-381 (480)
91 PRK01625 sspH acid-soluble spo 20.7 73 0.0016 24.4 1.9 18 172-189 14-31 (59)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-61 Score=461.91 Aligned_cols=282 Identities=31% Similarity=0.489 Sum_probs=237.4
Q ss_pred ccccccCCcccccC-------CCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec------ceeEec
Q 017716 63 SLRALAGQAEGFGR-------LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR------SHLSVS 129 (367)
Q Consensus 63 ~~~ala~~a~Gfg~-------~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~------~~l~V~ 129 (367)
+-|.| ...+|||+ +||||.+|++++|+|.+| |..++.+.+|.++|+-++|+|+++ ..|.+.
T Consensus 27 nt~t~-~~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~ 100 (345)
T COG3866 27 NTQTL-NSFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIG 100 (345)
T ss_pred CCccc-ccccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeec
Confidence 44555 35788886 589999999999999999 999999999997777799999987 467788
Q ss_pred cCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCCCC--CCceEecCCCceEEEEceeeec--------CCCCceE
Q 017716 130 SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPD--VDAIQIKPKSKHIWIDRCSLRD--------YDDGLID 199 (367)
Q Consensus 130 snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~~d--~DaI~i~~~s~nVWIDHcsfs~--------~~Dglid 199 (367)
|||||+|.|..++|.|++|.|+.+.|||||||+|++-...| .|+|+|+.+++|||||||+|.. ..||++|
T Consensus 101 sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~D 180 (345)
T COG3866 101 SNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVD 180 (345)
T ss_pred cccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEE
Confidence 99999999999999999999999999999999999865444 4999997689999999999998 6899999
Q ss_pred eecCCceEEEeCceecCCCceeEecCCCCC-CCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECcccceeeecC
Q 017716 200 ITRESTDITVSRCHFSSHDKTMLIGADPSH-VADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASV 278 (367)
Q Consensus 200 i~~~s~~VTIS~n~f~~H~k~~LiG~sd~~-~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai~~~~ 278 (367)
+++++++||||||+|++|+|++|+|++|+. ..|++.+||+|||||+|+.||+||+|||.+|||||||+....|++..++
T Consensus 181 ik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~i 260 (345)
T COG3866 181 IKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITI 260 (345)
T ss_pred eccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEee
Confidence 999999999999999999999999999874 4567799999999999999999999999999999999976656555555
Q ss_pred C--ceEEEEceeEecCCcceeeeeeccccCCcccCCCcEEEecCCeeeccccccccccCCCCcccCCCCCCcccc-----
Q 017716 279 D--SQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT----- 351 (367)
Q Consensus 279 ~--a~i~~e~N~F~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~~~~~~~~~~~~~P~~~Y~~~~----- 351 (367)
+ |+|++|+|||+....+..+ +.. +...|||..+-+.+++++..... ..++..|+|+.+|+|.-
T Consensus 261 G~~AkiyvE~NyF~~~~~~~~f--~dt------~~~~GY~~~d~gsy~~~s~~~~~--~~~G~~w~ps~~Y~Ytvd~~~d 330 (345)
T COG3866 261 GTSAKIYVENNYFENGSEGLGF--LDT------KGTSGYANQDSGSYLNSSKSMSV--RAGGVTWNPSSYYSYTVDPPED 330 (345)
T ss_pred ccceEEEEecceeccCCCCcee--eec------CCccceEEeccCceecccCCccc--ccCCccCCCCCCcccccCChHH
Confidence 5 9999999999998776554 211 11249999655666665443322 23458999999997655
Q ss_pred ---eeecccCCc
Q 017716 352 ---LLQRCTGWQ 360 (367)
Q Consensus 352 ---~~~~~ag~q 360 (367)
+|-+|||+-
T Consensus 331 Vks~Vt~yAGaG 342 (345)
T COG3866 331 VKSFVTNYAGAG 342 (345)
T ss_pred hhhhhhccccce
Confidence 999999953
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1.5e-52 Score=386.69 Aligned_cols=177 Identities=46% Similarity=0.750 Sum_probs=158.4
Q ss_pred EEEEeceEEEecceeEeccCcceeeeccceEEeCCcEEEe-eeccEEEeeeEEeCC----------C--CCCCCceEecC
Q 017716 112 IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGG----------K--GPDVDAIQIKP 178 (367)
Q Consensus 112 IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~I~G~gi~i~-~a~NVIIRnL~i~~g----------~--~~d~DaI~i~~ 178 (367)
+||+++|+|+++.+|.|.|||||+|+|.+++|.+.|+++. +++|||||||+|+.. . ..+.|+|+|+
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~- 81 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID- 81 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence 3677999999999999999999999999999999999997 899999999999982 1 2578999998
Q ss_pred CCceEEEEceeeecC--------CCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCC
Q 017716 179 KSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQR 250 (367)
Q Consensus 179 ~s~nVWIDHcsfs~~--------~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R 250 (367)
+++|||||||+|+|+ .||++|++.++++||||||+|++|+|++|+|++|....|.+++||||||||+++.+|
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R 161 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR 161 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence 889999999999999 999999999999999999999999999999998877777779999999999999999
Q ss_pred CCccccCeeEEEcceEECcccceeeecCCceEEEEceeE
Q 017716 251 HPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY 289 (367)
Q Consensus 251 ~Pr~r~G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F 289 (367)
+||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.4e-48 Score=357.82 Aligned_cols=168 Identities=45% Similarity=0.699 Sum_probs=158.5
Q ss_pred ceeEeccCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecC-------
Q 017716 124 SHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDY------- 193 (367)
Q Consensus 124 ~~l~V~snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~---~d~DaI~i~~~s~nVWIDHcsfs~~------- 193 (367)
.+|.|+|||||+|+|++++|.|++|++++++|||||||+|+++.. .+.|+|+++ ++++||||||+|+|.
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~ 88 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD 88 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence 468899999999999999999999999989999999999998764 578999997 799999999999998
Q ss_pred --CCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECccc
Q 017716 194 --DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI 271 (367)
Q Consensus 194 --~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~ 271 (367)
.|+++|++.++++||||||+|.+|+|++|||++++...++.++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus 89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~ 168 (190)
T smart00656 89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS 168 (190)
T ss_pred CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence 899999999999999999999999999999999876656678999999999999999999999999999999999999
Q ss_pred ceeeecCCceEEEEceeEecC
Q 017716 272 YAVCASVDSQIYSQCNIYEAG 292 (367)
Q Consensus 272 yai~~~~~a~i~~e~N~F~~g 292 (367)
|+++++.++++++|+|||++.
T Consensus 169 ~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 169 YAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EeEecCCCcEEEEECeEEECC
Confidence 999999999999999999874
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.20 E-value=1.6e-09 Score=106.86 Aligned_cols=110 Identities=26% Similarity=0.303 Sum_probs=70.0
Q ss_pred HHHhhhcCCCeEEEEEeceEEEecceeEec-cCcceeeeccc-eEEe-------CCcEEEeeeccEEEeeeEEeCCCCCC
Q 017716 100 LREGCRMKEPLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQR-VKLT-------GKGLRLKECEHVIICNLEFEGGKGPD 170 (367)
Q Consensus 100 Lr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~-snkTI~G~G~g-i~I~-------G~gi~i~~a~NVIIRnL~i~~g~~~d 170 (367)
|++|+++.+|...|+--.|+.+++..|.|. +++||.|.|.+ ..|. +.+|.+. ++||.|++|+++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~~--- 76 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENTK--- 76 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcCC---
Confidence 688999988877666678999888888887 89999998754 4443 2235553 777888888776532
Q ss_pred CCceEecCCCceEEEEceeeecC--------CCCceEeecCCceEEEeCceecC
Q 017716 171 VDAIQIKPKSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSS 216 (367)
Q Consensus 171 ~DaI~i~~~s~nVWIDHcsfs~~--------~Dglidi~~~s~~VTIS~n~f~~ 216 (367)
.+||.+. +++++-|++|.+.|. .+| |.+ ..+.+++|.+|.++.
T Consensus 77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~G-I~~-~~s~~v~I~~n~i~g 127 (314)
T TIGR03805 77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYG-IYP-VESTNVLVEDSYVRG 127 (314)
T ss_pred CCeEEEe-CCCCEEEEeeEEEeccCccccCCcce-EEE-eccCCEEEECCEEEC
Confidence 2455554 455555555555432 233 333 235555555555543
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.93 E-value=1e-08 Score=104.34 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=96.6
Q ss_pred ecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEec------cCcceeee-ccceEEeCCc-EEEeeeccEEEee
Q 017716 89 VTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVS------SYKTIDGR-GQRVKLTGKG-LRLKECEHVIICN 160 (367)
Q Consensus 89 VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~------snkTI~G~-G~gi~I~G~g-i~i~~a~NVIIRn 160 (367)
|++.++ |++||++..|...|+..+|+.+ ...|.+. ..+||..+ ...+.|.|.. |+|. .+.++|.+
T Consensus 1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G 73 (425)
T PF14592_consen 1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG 73 (425)
T ss_dssp E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence 566666 9999999888777777899997 3456652 46888887 4577888764 7776 79999999
Q ss_pred eEEeCCCCCC---------C-----Cc--------------------eEe---cCCCceEEEEceeeecC--CCCceEee
Q 017716 161 LEFEGGKGPD---------V-----DA--------------------IQI---KPKSKHIWIDRCSLRDY--DDGLIDIT 201 (367)
Q Consensus 161 L~i~~g~~~d---------~-----Da--------------------I~i---~~~s~nVWIDHcsfs~~--~Dglidi~ 201 (367)
|.|+.+.... . +- ..+ .-.++|--||||.|..- ..-+|-+.
T Consensus 74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~ 153 (425)
T PF14592_consen 74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR 153 (425)
T ss_dssp -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence 9998642100 0 00 111 00134444699999752 22233332
Q ss_pred -------cCCceEEEeCceecC-------CCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccc--cCeeEEEcce
Q 017716 202 -------RESTDITVSRCHFSS-------HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR--YAKVHLYNNY 265 (367)
Q Consensus 202 -------~~s~~VTIS~n~f~~-------H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r--~G~~Hv~NN~ 265 (367)
....+-+|.+|+|.. ...++-||.+.....+ -+.++.+|||.+|.+-.=-++ -+...+.||.
T Consensus 154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt 231 (425)
T PF14592_consen 154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT 231 (425)
T ss_dssp -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence 124577899999984 3457788877543222 268999999999988754443 3666777777
Q ss_pred EECcccceeeecCCceEEEEceeEec
Q 017716 266 TRNWGIYAVCASVDSQIYSQCNIYEA 291 (367)
Q Consensus 266 ~~n~~~yai~~~~~a~i~~e~N~F~~ 291 (367)
|++.. -.+..|-|-.-.+++|+|..
T Consensus 232 f~es~-G~ltlRHGn~n~V~gN~FiG 256 (425)
T PF14592_consen 232 FRESQ-GSLTLRHGNRNTVEGNVFIG 256 (425)
T ss_dssp EES-S-SEEEEEE-SS-EEES-EEEE
T ss_pred EEecc-ceEEEecCCCceEeccEEec
Confidence 77653 23444444444446666654
No 6
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.37 E-value=1.7e-05 Score=81.53 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=79.1
Q ss_pred hhHHHhhhcCC-CeEEEEEeceEEEecceeEeccCcceeeeccceE---EeCCc-EE-EeeeccEEEeeeEEeCCCC---
Q 017716 98 GSLREGCRMKE-PLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK---LTGKG-LR-LKECEHVIICNLEFEGGKG--- 168 (367)
Q Consensus 98 GSLr~Ai~~~~-P~~IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~---I~G~g-i~-i~~a~NVIIRnL~i~~g~~--- 168 (367)
-.|++||++.. +...|.-..|+.. ...|.+.+++||.|.. +++ |.|.+ +. -..++||.|++|+|++...
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G~Y~-~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~ 132 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPGVYR-TGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP 132 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcee-cccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence 35999987643 3322233568773 4779999999999984 454 66554 22 2469999999999997542
Q ss_pred CCCCceEecCCCceEEEEceeeecC-CCCceEeecCCceEEEeCceecC
Q 017716 169 PDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITRESTDITVSRCHFSS 216 (367)
Q Consensus 169 ~d~DaI~i~~~s~nVWIDHcsfs~~-~Dglidi~~~s~~VTIS~n~f~~ 216 (367)
....+|.+. +++++-|.+|+|.+. ..| |++. +++ ..|+.|.+..
T Consensus 133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~g 177 (455)
T TIGR03808 133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTITQ 177 (455)
T ss_pred CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEec
Confidence 234578885 899999999999998 488 6673 455 6666666553
No 7
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.23 E-value=2.5e-05 Score=66.54 Aligned_cols=134 Identities=18% Similarity=0.262 Sum_probs=89.4
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 017716 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (367)
Q Consensus 147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~s 226 (367)
||.+....++.|++.+|+.. ..+||.+. .+..+.|+.|+|.+...+ +.+. ...+++|++|.|.+...+..+-..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence 57777788899999999985 35899997 677789999999995555 6664 458999999999987744444322
Q ss_pred CCCCCCcceeEEEecceecCCCCCCCccc--cCeeEEEcceEECcccceeeecCCc--eEEEEceeEecCCc
Q 017716 227 PSHVADRCIRVTIHHCFFDGTRQRHPRVR--YAKVHLYNNYTRNWGIYAVCASVDS--QIYSQCNIYEAGQK 294 (367)
Q Consensus 227 d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r--~G~~Hv~NN~~~n~~~yai~~~~~a--~i~~e~N~F~~g~~ 294 (367)
-.+++.+|.+.++..-.=.+. ...+.+.||.+.+....++...... .+.+++|.|.....
T Consensus 76 --------~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~ 139 (158)
T PF13229_consen 76 --------SNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGG 139 (158)
T ss_dssp --------CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESS
T ss_pred --------CCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcc
Confidence 157888888877755433333 3457899999988776777666655 88889999987653
No 8
>PLN02218 polygalacturonase ADPG
Probab=98.20 E-value=0.00012 Score=75.45 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=70.0
Q ss_pred eeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCCCC
Q 017716 152 ECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV 230 (367)
Q Consensus 152 ~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~ 230 (367)
.++||+|+||+|.... ....|||.+. .++||+|.+|.+..+.|- |.++.++.+|+|++|.+. +..++-||+--...
T Consensus 222 ~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDDc-IaIksgs~nI~I~n~~c~-~GHGisIGS~g~~~ 298 (431)
T PLN02218 222 KCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDDC-ISIESGSQNVQINDITCG-PGHGISIGSLGDDN 298 (431)
T ss_pred ceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCce-EEecCCCceEEEEeEEEE-CCCCEEECcCCCCC
Confidence 4555555555555321 2357999997 899999999999988666 899999999999999985 34456788753221
Q ss_pred -CCcceeEEEecceecCCCCCCCccc
Q 017716 231 -ADRCIRVTIHHCFFDGTRQRHPRVR 255 (367)
Q Consensus 231 -~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (367)
.+.--+|++.++.|.++. +.=|++
T Consensus 299 ~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 299 SKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred CCceEEEEEEEccEEecCC-cceEEe
Confidence 222247899998887653 344443
No 9
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.17 E-value=9.7e-05 Score=67.10 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=99.6
Q ss_pred hHHHhh--hcCCCeEEEEEeceEEEecceeEeccCcceeeeccceE-Ee--CC--cE-------EEee-ecc--EEEeee
Q 017716 99 SLREGC--RMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK-LT--GK--GL-------RLKE-CEH--VIICNL 161 (367)
Q Consensus 99 SLr~Ai--~~~~P~~IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~-I~--G~--gi-------~i~~-a~N--VIIRnL 161 (367)
.|++|| .+....-+|+-..|++.++..|.+.++++|.|.|...+ +. +. .+ .+.. ..+ +-|+||
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 499999 33334445566899999999999999999999976443 33 11 11 1111 122 449999
Q ss_pred EEeCCCCC---CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEe------CceecCCCceeEecCCCCCCCC
Q 017716 162 EFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVS------RCHFSSHDKTMLIGADPSHVAD 232 (367)
Q Consensus 162 ~i~~g~~~---d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS------~n~f~~H~k~~LiG~sd~~~~d 232 (367)
+|...... ...+|.+. .++++||++|++.+.....+.+. ..+...+. ++.|++..+
T Consensus 100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~------------- 164 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN------------- 164 (225)
T ss_dssp EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE-------------
T ss_pred EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee-------------
Confidence 99976532 24678886 78999999999998755556664 12222222 222222111
Q ss_pred cceeEEEecceecCCCCCCCcccc--CeeEEEcceEECcccceeeecCCceEEEEceeEecCC
Q 017716 233 RCIRVTIHHCFFDGTRQRHPRVRY--AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293 (367)
Q Consensus 233 ~~~~VT~hhN~f~~~~~R~Pr~r~--G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~ 293 (367)
.+.+...++.....- +.. -.+.+.||++.+....+|....+..+.+++|.|++..
T Consensus 165 ---~~~~~~~~~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 165 ---NVIVNNCIFNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp ---EEEEECEEEESSSCS---EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred ---EEEECCccccCCCce---eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 111111112111111 111 2466777777775557777777777888888887643
No 10
>PLN02218 polygalacturonase ADPG
Probab=98.13 E-value=4.6e-05 Score=78.62 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=106.3
Q ss_pred eeEeccC--cceeeeccceE-----Ee-------C-CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEcee
Q 017716 125 HLSVSSY--KTIDGRGQRVK-----LT-------G-KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCS 189 (367)
Q Consensus 125 ~l~V~sn--kTI~G~G~gi~-----I~-------G-~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcs 189 (367)
.|.|... =||+|+|..-- .. . --|++.+++||.|++|+|+....+ .|.+. .+++|+|++.+
T Consensus 157 ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~ 232 (431)
T PLN02218 157 NLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVV 232 (431)
T ss_pred EEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEE
Confidence 3556443 69999984210 00 1 126788999999999999987543 57776 79999999999
Q ss_pred eec-----CCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCC-------CCCcc-cc
Q 017716 190 LRD-----YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RY 256 (367)
Q Consensus 190 fs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~-------R~Pr~-r~ 256 (367)
+.. ..|| ||+ ..+.+|+|++|.|..-+-+.-|.+.. .+|++.++++..... +.+.- ..
T Consensus 233 I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V 303 (431)
T PLN02218 233 VTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFV 303 (431)
T ss_pred EeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceE
Confidence 864 6899 899 56899999999999888887776542 267777776632211 11100 01
Q ss_pred CeeEEEcceEECccccee--e---e--cCCceEEEEceeEecCCcceeee
Q 017716 257 AKVHLYNNYTRNWGIYAV--C---A--SVDSQIYSQCNIYEAGQKKMAFK 299 (367)
Q Consensus 257 G~~Hv~NN~~~n~~~yai--~---~--~~~a~i~~e~N~F~~g~~~~v~~ 299 (367)
-.++|.|+.+.+.. .++ - + +.-..|.+|+...++...+.+++
T Consensus 304 ~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Id 352 (431)
T PLN02218 304 SGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIID 352 (431)
T ss_pred EEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeEEEEcccccEEEE
Confidence 13567777776642 333 1 1 12246777888888877776654
No 11
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.11 E-value=0.00024 Score=70.41 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=101.4
Q ss_pred ccCcceeeeccceEEe---CCcEEEeeeccEEEeeeEEeCCCC----CCCCceEecCCCceEEEEceeeecCCCCceEee
Q 017716 129 SSYKTIDGRGQRVKLT---GKGLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDIT 201 (367)
Q Consensus 129 ~snkTI~G~G~gi~I~---G~gi~i~~a~NVIIRnL~i~~g~~----~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~ 201 (367)
.+++||.+. +|. +.+|.+.+++||+||++++..... ...+||.+. .++++.|.+|.++...|--|.+
T Consensus 62 a~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv- 135 (314)
T TIGR03805 62 SDDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV- 135 (314)
T ss_pred eCCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-
Confidence 356666665 222 357888889999999999975422 236899997 8999999999999987755667
Q ss_pred cCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCC--------CccccCeeEEEcceEECcc---
Q 017716 202 RESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--------PRVRYAKVHLYNNYTRNWG--- 270 (367)
Q Consensus 202 ~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~--------Pr~r~G~~Hv~NN~~~n~~--- 270 (367)
..+++++|++|.+.+-.+++.+-.+. ++.+.+|.+.++..-. |.+....+.|+||.+.+..
T Consensus 136 ~~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n 207 (314)
T TIGR03805 136 GQSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPN 207 (314)
T ss_pred CCCCCeEEECCEEccCcceEEEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCC
Confidence 46889999999998777777665442 3566666665543211 1111134677777665321
Q ss_pred -------------cceeeecCCceEEEEceeEecCCcc
Q 017716 271 -------------IYAVCASVDSQIYSQCNIYEAGQKK 295 (367)
Q Consensus 271 -------------~yai~~~~~a~i~~e~N~F~~g~~~ 295 (367)
..++-.....++.+++|.|......
T Consensus 208 ~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~ 245 (314)
T TIGR03805 208 FAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTA 245 (314)
T ss_pred CcccCCceecCCCCcEEEEEcccceEEECCEEeCCcce
Confidence 1122223335788899999887654
No 12
>PLN02793 Probable polygalacturonase
Probab=98.10 E-value=0.00012 Score=75.68 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=74.3
Q ss_pred EEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 017716 148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~s 226 (367)
|.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+-
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSl 279 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSL 279 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecc
Confidence 44456777777777776543 3457999997 899999999999987776 8998899999999999853 335668874
Q ss_pred CCC-CCCcceeEEEecceecCCCCCCCcc
Q 017716 227 PSH-VADRCIRVTIHHCFFDGTRQRHPRV 254 (367)
Q Consensus 227 d~~-~~d~~~~VT~hhN~f~~~~~R~Pr~ 254 (367)
... ....-.+|++.++.|.+.. +.=|+
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~-~GirI 307 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTD-NGVRI 307 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCC-ceEEE
Confidence 221 1122247999999888764 34444
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.10 E-value=0.00011 Score=76.31 Aligned_cols=103 Identities=24% Similarity=0.450 Sum_probs=73.6
Q ss_pred EEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 017716 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd 227 (367)
.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++++|+|++|.+.. ..++-||+-.
T Consensus 165 ~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSlg 241 (456)
T PLN03003 165 HISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSLG 241 (456)
T ss_pred EEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeecc
Confidence 3344566666666666532 3457999997 899999999999988777 8999999999999999863 3467788653
Q ss_pred CCC-CCcceeEEEecceecCCCCCCCccc
Q 017716 228 SHV-ADRCIRVTIHHCFFDGTRQRHPRVR 255 (367)
Q Consensus 228 ~~~-~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (367)
... .+.--+|++.++.|.++. +.=|++
T Consensus 242 ~~g~~~~V~NV~v~n~~~~~T~-nGvRIK 269 (456)
T PLN03003 242 KDGETATVENVCVQNCNFRGTM-NGARIK 269 (456)
T ss_pred CCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence 221 122348999999988764 333554
No 14
>PLN02155 polygalacturonase
Probab=97.97 E-value=8.1e-05 Score=75.98 Aligned_cols=102 Identities=18% Similarity=0.346 Sum_probs=73.9
Q ss_pred EEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 017716 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd 227 (367)
.+..++||.|+||+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+--
T Consensus 172 ~~~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g 248 (394)
T PLN02155 172 TLNGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLA 248 (394)
T ss_pred EEECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEecccc
Confidence 3445677777777776532 3457999997 899999999999998886 8998899999999998873 3467788742
Q ss_pred CC-CCCcceeEEEecceecCCCCCCCcc
Q 017716 228 SH-VADRCIRVTIHHCFFDGTRQRHPRV 254 (367)
Q Consensus 228 ~~-~~d~~~~VT~hhN~f~~~~~R~Pr~ 254 (367)
.. ....-.+|++.++.|.+.. +.=|+
T Consensus 249 ~~~~~~~V~nV~v~n~~~~~t~-~GirI 275 (394)
T PLN02155 249 KELNEDGVENVTVSSSVFTGSQ-NGVRI 275 (394)
T ss_pred ccCCCCcEEEEEEEeeEEeCCC-cEEEE
Confidence 21 1222248999999998753 33344
No 15
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.93 E-value=0.00051 Score=71.38 Aligned_cols=138 Identities=14% Similarity=0.205 Sum_probs=90.5
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (367)
|++.+++||.|++|+++.... =.|.+. .+++|.|++..+.. ..|| ||+ ..+++|+|.+|.|..-|-+.-
T Consensus 141 l~f~~~~nv~I~gitl~NSp~---w~i~i~-~c~nV~i~~l~I~ap~~spNTDG-IDi-~~S~nV~I~n~~I~tGDDCIa 214 (456)
T PLN03003 141 LKFRSCNNLRLSGLTHLDSPM---AHIHIS-ECNYVTISSLRINAPESSPNTDG-IDV-GASSNVVIQDCIIATGDDCIA 214 (456)
T ss_pred EEEEecCCcEEeCeEEecCCc---EEEEEe-ccccEEEEEEEEeCCCCCCCCCc-Eee-cCcceEEEEecEEecCCCeEE
Confidence 678899999999999998654 356776 78999999999864 5799 899 578999999999999888888
Q ss_pred ecCCCCCCCCcceeEEEecceecCC-------CCCCCcc-ccCeeEEEcceEECcccceee-----ec--CCceEEEEce
Q 017716 223 IGADPSHVADRCIRVTIHHCFFDGT-------RQRHPRV-RYAKVHLYNNYTRNWGIYAVC-----AS--VDSQIYSQCN 287 (367)
Q Consensus 223 iG~sd~~~~d~~~~VT~hhN~f~~~-------~~R~Pr~-r~G~~Hv~NN~~~n~~~yai~-----~~--~~a~i~~e~N 287 (367)
+.+... +|++-++.+... ..+.... ..-.+++.|+.+.+.. .++. ++ .-..|.+|+-
T Consensus 215 iksgs~-------NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~-nGvRIKT~~Gg~G~v~nItf~nI 286 (456)
T PLN03003 215 INSGTS-------NIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTM-NGARIKTWQGGSGYARMITFNGI 286 (456)
T ss_pred eCCCCc-------cEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCC-cEEEEEEeCCCCeEEEEEEEEeE
Confidence 775421 456655544221 1111000 0124678888877642 2321 11 1135666666
Q ss_pred eEecCCcceeee
Q 017716 288 IYEAGQKKMAFK 299 (367)
Q Consensus 288 ~F~~g~~~~v~~ 299 (367)
.+++...+.+.+
T Consensus 287 ~m~nV~~pI~Id 298 (456)
T PLN03003 287 TLDNVENPIIID 298 (456)
T ss_pred EecCccceEEEE
Confidence 666655555543
No 16
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.92 E-value=0.00016 Score=74.01 Aligned_cols=97 Identities=22% Similarity=0.406 Sum_probs=70.2
Q ss_pred EEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 017716 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd 227 (367)
.+..++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++++|+|+++... +..++-||+-.
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDDc-Iaiksg~~nI~I~n~~c~-~ghGisiGSlG 258 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDDC-ISIGQGNSQVTITRIRCG-PGHGISVGSLG 258 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCcE-EEEccCCccEEEEEEEEc-CCCcEEeCCCC
Confidence 3345666667777766432 2457999997 899999999999998885 899989999999999885 33467788732
Q ss_pred CC-CCCcceeEEEecceecCCC
Q 017716 228 SH-VADRCIRVTIHHCFFDGTR 248 (367)
Q Consensus 228 ~~-~~d~~~~VT~hhN~f~~~~ 248 (367)
.. ....--+|++.++.|.++.
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~ 280 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTT 280 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCC
Confidence 11 1112247899999887763
No 17
>PLN03010 polygalacturonase
Probab=97.90 E-value=0.0015 Score=67.19 Aligned_cols=113 Identities=22% Similarity=0.343 Sum_probs=67.1
Q ss_pred eccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCCC-C
Q 017716 153 CEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH-V 230 (367)
Q Consensus 153 a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~-~ 230 (367)
++||.|+||+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++++++|.++... ...++-||+--.. .
T Consensus 188 ~~nv~i~~i~I~a~~~s~NTDGiDi~-~s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~-~gHGisIGS~g~~~~ 264 (409)
T PLN03010 188 CNYVAISKINILAPETSPNTDGIDIS-YSTNINIFDSTIQTGDDC-IAINSGSSNINITQINCG-PGHGISVGSLGADGA 264 (409)
T ss_pred cccEEEEEEEEeCCCCCCCCCceeee-ccceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeE-CcCCEEEccCCCCCC
Confidence 344444444443321 2357999997 789999999999888666 889888877777766554 2235667764221 1
Q ss_pred CCcceeEEEecceecCCCCCCCcccc---CeeEEEcceEECc
Q 017716 231 ADRCIRVTIHHCFFDGTRQRHPRVRY---AKVHLYNNYTRNW 269 (367)
Q Consensus 231 ~d~~~~VT~hhN~f~~~~~R~Pr~r~---G~~Hv~NN~~~n~ 269 (367)
.+.--+|++.++.|.+.. +.=|++. +...|.|=.|+|.
T Consensus 265 ~~~V~nV~v~n~~i~~t~-~GirIKt~~G~~G~v~nItf~nI 305 (409)
T PLN03010 265 NAKVSDVHVTHCTFNQTT-NGARIKTWQGGQGYARNISFENI 305 (409)
T ss_pred CCeeEEEEEEeeEEeCCC-cceEEEEecCCCEEEEEeEEEeE
Confidence 122247888888887653 3334432 2334444444443
No 18
>PLN02480 Probable pectinesterase
Probab=97.86 E-value=0.0016 Score=65.54 Aligned_cols=97 Identities=9% Similarity=0.217 Sum_probs=67.2
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccc-eEEeCC----------cEEEeeeccEEEee
Q 017716 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQR-VKLTGK----------GLRLKECEHVIICN 160 (367)
Q Consensus 99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~g-i~I~G~----------gi~i~~a~NVIIRn 160 (367)
||++||++. ..+++|+-..|+.+ +.|.| .+|+||.|.+.+ ..|.+. .|.|. +++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~-a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE-APHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE-CCCEEEEe
Confidence 799999763 23556666779884 67778 367999998743 334321 25554 89999999
Q ss_pred eEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCce
Q 017716 161 LEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (367)
Q Consensus 161 L~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dgli 198 (367)
|+|++..+ ...-||.+.-.+.++.+.+|.|.-..|=|+
T Consensus 139 LTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy 182 (343)
T PLN02480 139 ISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLF 182 (343)
T ss_pred eEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeE
Confidence 99998632 123466664468899999999976666554
No 19
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.82 E-value=0.0011 Score=63.74 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=81.0
Q ss_pred hHHHhhhcCCCeEEEEEeceEEEecc----eeEeccCcceeee----cc----------ceEEeCCc-------EEEeee
Q 017716 99 SLREGCRMKEPLWIVFEVSGTIHLRS----HLSVSSYKTIDGR----GQ----------RVKLTGKG-------LRLKEC 153 (367)
Q Consensus 99 SLr~Ai~~~~P~~IVf~vsGtI~l~~----~l~V~snkTI~G~----G~----------gi~I~G~g-------i~i~~a 153 (367)
+|.+|++...|..+|.--.|+++-.. +|.+.+.+||.|. |. ++.|.|.+ +.|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 58899988888777766789986543 4888888999985 22 22344433 455567
Q ss_pred ccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecC-CCCceEeec-----CCceEEEeCceecCCCce
Q 017716 154 EHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITR-----ESTDITVSRCHFSSHDKT 220 (367)
Q Consensus 154 ~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~-~Dglidi~~-----~s~~VTIS~n~f~~H~k~ 220 (367)
++..|+.++|+......+-||.|+ ++ +.-|..|+|..+ .+| |.+.. ...+++|+.|.+.....+
T Consensus 97 ~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~G-I~v~g~~~~~~i~~~vI~GN~~~~~~~G 166 (246)
T PF07602_consen 97 NNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREG-IFVTGTSANPGINGNVISGNSIYFNKTG 166 (246)
T ss_pred CCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCcccc-EEEEeeecCCcccceEeecceEEecCcC
Confidence 888999999998743456788997 44 788899999986 555 43322 234577777776644333
No 20
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.73 E-value=0.0004 Score=59.05 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=71.4
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCc-eeEecC
Q 017716 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-TMLIGA 225 (367)
Q Consensus 147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k-~~LiG~ 225 (367)
+|.+...+++.|+|-+|+. ...+|.+. ...++.|+.|.|++.. ..+.+. .+..++|++|.|.+... ++.+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~-~~i~~~-~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNG-SGIYVS-GSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-S-EEEECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEcc-ceEEEE-ecCCceecCcEEEcCCCccEEEec
Confidence 5666666667777777776 35677776 5677888888887777 335553 67778888888876544 444432
Q ss_pred CCCCCCCcceeEEEecceecCCCCCCCcccc-C--eeEEEcceEECcccceeeecCCce-EEEEceeE
Q 017716 226 DPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-A--KVHLYNNYTRNWGIYAVCASVDSQ-IYSQCNIY 289 (367)
Q Consensus 226 sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G--~~Hv~NN~~~n~~~yai~~~~~a~-i~~e~N~F 289 (367)
....+++.+|.|.++....=.+.. . .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus 98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 012467777777776643333322 2 566788877776667776665555 77777776
No 21
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.0016 Score=65.04 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=88.3
Q ss_pred eceEEEecceeEeccCcceeeeccceEEeCCc----EEEeeeccEEEeeeEEeCCCC---CCCCceEecCCCceEEEEce
Q 017716 116 VSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG----LRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRC 188 (367)
Q Consensus 116 vsGtI~l~~~l~V~snkTI~G~G~gi~I~G~g----i~i~~a~NVIIRnL~i~~g~~---~d~DaI~i~~~s~nVWIDHc 188 (367)
.+|+. .+.+.|+.-+|+.|. .++++.|.+ +++. +.+||||.|++|+... .-+-+|-+...++...|.||
T Consensus 39 i~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N 114 (408)
T COG3420 39 ISGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHN 114 (408)
T ss_pred Eeeee--cccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcc
Confidence 34665 567888888999997 667787654 6665 9999999999997542 12457777667888899999
Q ss_pred eeecCCCCceEeecCCceEEEeCceecCC--------Cc-eeEecCCC--------CCCCCcceeEEEecceecCCCCCC
Q 017716 189 SLRDYDDGLIDITRESTDITVSRCHFSSH--------DK-TMLIGADP--------SHVADRCIRVTIHHCFFDGTRQRH 251 (367)
Q Consensus 189 sfs~~~Dglidi~~~s~~VTIS~n~f~~H--------~k-~~LiG~sd--------~~~~d~~~~VT~hhN~f~~~~~R~ 251 (367)
.+..+.-| |.+ .++.++-|--|.+..- .- ..+|..++ ++..|.-.-=|-+||.|.++.-|.
T Consensus 115 ~l~~n~~G-i~l-~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 115 DLIGNSFG-IYL-HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred cccccceE-EEE-eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceecccchhh
Confidence 99998888 445 5677888888877631 11 22333332 222233222344777777777765
Q ss_pred Ccc
Q 017716 252 PRV 254 (367)
Q Consensus 252 Pr~ 254 (367)
-|+
T Consensus 193 ~Ry 195 (408)
T COG3420 193 LRY 195 (408)
T ss_pred eee
Confidence 444
No 22
>PLN03010 polygalacturonase
Probab=97.70 E-value=0.0025 Score=65.49 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=101.8
Q ss_pred cCcceeeeccceEEeCCc------EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeee-----cCCCCce
Q 017716 130 SYKTIDGRGQRVKLTGKG------LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLR-----DYDDGLI 198 (367)
Q Consensus 130 snkTI~G~G~gi~I~G~g------i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs-----~~~Dgli 198 (367)
.|++|.|.| +|.|.| |++.+++||.|++|+++.... =.|.+. .+++|.|++..+. ...|| |
T Consensus 139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~---~~i~i~-~~~nv~i~~i~I~a~~~s~NTDG-i 210 (409)
T PLN03010 139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPK---NHISIK-TCNYVAISKINILAPETSPNTDG-I 210 (409)
T ss_pred cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCc---eEEEEe-ccccEEEEEEEEeCCCCCCCCCc-e
Confidence 578888864 577755 778899999999999998754 346776 7899999999885 46899 8
Q ss_pred EeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCC-----CCCCCc-cccCeeEEEcceEECcccc
Q 017716 199 DITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT-----RQRHPR-VRYAKVHLYNNYTRNWGIY 272 (367)
Q Consensus 199 di~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~-----~~R~Pr-~r~G~~Hv~NN~~~n~~~y 272 (367)
|+ ..+++|+|++|.|..-+-+.-+.+... .++|+.-.+...+- ..+... -..-.+++.|+.+.+.. +
T Consensus 211 Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~ 283 (409)
T PLN03010 211 DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-N 283 (409)
T ss_pred ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-c
Confidence 99 568999999999999888888875421 13444434432210 001000 00124577888777642 2
Q ss_pred eee--ecC-----CceEEEEceeEecCCcceeee
Q 017716 273 AVC--ASV-----DSQIYSQCNIYEAGQKKMAFK 299 (367)
Q Consensus 273 ai~--~~~-----~a~i~~e~N~F~~g~~~~v~~ 299 (367)
++. ... =..|.+|+-.+++...+.+.+
T Consensus 284 GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~ 317 (409)
T PLN03010 284 GARIKTWQGGQGYARNISFENITLINTKNPIIID 317 (409)
T ss_pred ceEEEEecCCCEEEEEeEEEeEEEecCCccEEEE
Confidence 321 111 135777777777777666654
No 23
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.67 E-value=0.00021 Score=70.97 Aligned_cols=105 Identities=28% Similarity=0.498 Sum_probs=75.8
Q ss_pred cEEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecC
Q 017716 147 GLRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA 225 (367)
Q Consensus 147 gi~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~ 225 (367)
.+.+..++||.|++|+|+... ....|||.+. +++||.|++|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS 193 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGS 193 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEE
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeee
Confidence 366677899999999998653 2457999997 789999999999888666 8998888899999999963 44566775
Q ss_pred CCCCCC-CcceeEEEecceecCCCCCCCccc
Q 017716 226 DPSHVA-DRCIRVTIHHCFFDGTRQRHPRVR 255 (367)
Q Consensus 226 sd~~~~-d~~~~VT~hhN~f~~~~~R~Pr~r 255 (367)
...... ..--+|+|.++.|.++. |.-|++
T Consensus 194 ~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK 223 (326)
T PF00295_consen 194 EGSGGSQNDIRNVTFENCTIINTD-NGIRIK 223 (326)
T ss_dssp ESSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred ccCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence 422110 11137999999887753 444553
No 24
>PLN02155 polygalacturonase
Probab=97.65 E-value=0.0019 Score=66.16 Aligned_cols=138 Identities=12% Similarity=0.154 Sum_probs=93.4
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (367)
|++.+++||.|++|+++.... =.|.+. .+++|.|++..+.. ..|| ||+ ..+++|+|++|.|..-+-+..
T Consensus 148 i~~~~~~nv~i~gitl~nSp~---w~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQV---SHMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCC---eEEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence 677889999999999998653 346665 78999999999953 4688 898 568999999999998888888
Q ss_pred ecCCCCCCCCcceeEEEecceecC-------CCCCCC-ccccCeeEEEcceEECcccceeee----c----CCceEEEEc
Q 017716 223 IGADPSHVADRCIRVTIHHCFFDG-------TRQRHP-RVRYAKVHLYNNYTRNWGIYAVCA----S----VDSQIYSQC 286 (367)
Q Consensus 223 iG~sd~~~~d~~~~VT~hhN~f~~-------~~~R~P-r~r~G~~Hv~NN~~~n~~~yai~~----~----~~a~i~~e~ 286 (367)
++.... +|++.++.+.. ...+.+ .-.+-.+.|.|+.+.+.. +++.. + .=..|.+++
T Consensus 222 ik~gs~-------nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT~~~~~gG~v~nI~f~n 293 (394)
T PLN02155 222 IGPGTR-------NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKSWARPSTGFVRNVFFQD 293 (394)
T ss_pred cCCCCc-------eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEEecCCCCEEEEEEEEEe
Confidence 875421 56666655532 112222 111225678888887642 34322 1 113566677
Q ss_pred eeEecCCcceeee
Q 017716 287 NIYEAGQKKMAFK 299 (367)
Q Consensus 287 N~F~~g~~~~v~~ 299 (367)
-.+++...+..++
T Consensus 294 i~m~~v~~pI~i~ 306 (394)
T PLN02155 294 LVMKNVENPIIID 306 (394)
T ss_pred EEEcCccccEEEE
Confidence 7777666666553
No 25
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.64 E-value=0.0021 Score=60.09 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=57.8
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 017716 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (367)
Q Consensus 147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~s 226 (367)
||.+..+++++|++-.|+... .||.+. .+.+..|..|.|+....| |.+ .++...+|+.|.|.+...++.+-.+
T Consensus 59 GI~~~~s~~~~i~~n~i~~n~----~Gi~l~-~s~~~~I~~N~i~~n~~G-I~l-~~s~~~~I~~N~i~~~~~GI~l~~s 131 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNNG----YGIYLM-GSSNNTISNNTISNNGYG-IYL-YGSSNNTISNNTISNNGYGIYLSSS 131 (236)
T ss_pred EEEEEccCCCEEEeEEEEccC----CCEEEE-cCCCcEEECCEecCCCce-EEE-eeCCceEEECcEEeCCCEEEEEEeC
Confidence 455555666666666666532 566665 444446677777666664 444 3455566777766655555555433
Q ss_pred CCCCCCcceeEEEecceecCCCCCCCc-ccc-CeeEEEcceE
Q 017716 227 PSHVADRCIRVTIHHCFFDGTRQRHPR-VRY-AKVHLYNNYT 266 (367)
Q Consensus 227 d~~~~d~~~~VT~hhN~f~~~~~R~Pr-~r~-G~~Hv~NN~~ 266 (367)
. +.++.+|.|.++..---. +.. ....+++|.|
T Consensus 132 ~--------~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f 165 (236)
T PF05048_consen 132 S--------NNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF 165 (236)
T ss_pred C--------CCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence 1 356666666665332222 211 2356666666
No 26
>PLN02197 pectinesterase
Probab=97.64 E-value=0.0014 Score=70.15 Aligned_cols=150 Identities=20% Similarity=0.323 Sum_probs=93.9
Q ss_pred ccccccccCCcccccCCCCCCCCCceEEecCCCCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---c
Q 017716 61 DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---S 130 (367)
Q Consensus 61 d~~~~ala~~a~Gfg~~ttGG~gG~v~~VT~l~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---s 130 (367)
...++.|. +.+.|+.+-||.++.+-..-..+.+|.| |+++||++ +..|+||+-..|++ .+.+.|. +
T Consensus 250 ~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~ 325 (588)
T PLN02197 250 GADRKLMA--KAGRGANAGGGGGGKIKATHVVAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIY--NEQVTIPKKKN 325 (588)
T ss_pred ccchhhhc--cCcccccccccccccccccEEEcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceE--EEEEEccCCCc
Confidence 34555564 3445556666665554322224556766 78899975 23466666677998 4667774 6
Q ss_pred CcceeeeccceEEe-C-------Cc--------EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecC
Q 017716 131 YKTIDGRGQRVKLT-G-------KG--------LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDY 193 (367)
Q Consensus 131 nkTI~G~G~gi~I~-G-------~g--------i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~ 193 (367)
|+||.|.|.+-+|. + .+ +.+ .+++++.|||+|+...+. ..-|+.++-.+..+-+.+|.|.-.
T Consensus 326 ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~Gy 404 (588)
T PLN02197 326 NIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGY 404 (588)
T ss_pred eEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEec
Confidence 89999998655543 1 11 333 489999999999986432 234554443578899999999765
Q ss_pred CCCce-----------------EeecCCceEEEeCceec
Q 017716 194 DDGLI-----------------DITRESTDITVSRCHFS 215 (367)
Q Consensus 194 ~Dgli-----------------di~~~s~~VTIS~n~f~ 215 (367)
.|=|+ |+.-+....-+++|.|.
T Consensus 405 QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 443 (588)
T PLN02197 405 QDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIV 443 (588)
T ss_pred CcceEecCCCEEEEeeEEEecccccccceeeeeecCEEE
Confidence 55444 44444444566666654
No 27
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.59 E-value=0.0035 Score=63.73 Aligned_cols=183 Identities=17% Similarity=0.268 Sum_probs=133.6
Q ss_pred ceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeeeccceEEeCC---cEEE---------ee
Q 017716 85 PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGK---GLRL---------KE 152 (367)
Q Consensus 85 ~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~I~G~---gi~i---------~~ 152 (367)
++|.+-=.+| |.+||.+-.. |..+.+-++.+.+.|.|.+..+|+|+|+.+.|.+. +|++ .+
T Consensus 47 kt~~~~P~eD-----le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g 119 (386)
T PF01696_consen 47 KTYWMEPGED-----LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG 119 (386)
T ss_pred EEEEcCCCcC-----HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence 3555665566 9999988663 45667888888899999999999999998888543 2544 24
Q ss_pred eccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCC
Q 017716 153 CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD 232 (367)
Q Consensus 153 a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d 232 (367)
-.+|.+.|++|.... ...|+-+. ...++.|.-|.|....--.++.. ....|..|.|..-+|++... +
T Consensus 120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~-~------ 186 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSR-G------ 186 (386)
T ss_pred eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecC-C------
Confidence 579999999999754 24567676 67899999999998877777774 56789999998888877532 1
Q ss_pred cceeEEEecceecCCCCCCCccccCeeEEEcceEECcccceeeecCCceEEEEceeEecCC
Q 017716 233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293 (367)
Q Consensus 233 ~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~ 293 (367)
..++++.+|.|..+.-=. +.-|...+.+|...+-. -.+-... +-.+.+|.|....
T Consensus 187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~-Cf~l~~g--~g~i~~N~v~~~~ 241 (386)
T PF01696_consen 187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECG-CFVLMKG--TGSIKHNMVCGPN 241 (386)
T ss_pred -cceEEeeheeeeheEEEE--EecCCeEEecceecccc-eEEEEcc--cEEEeccEEeCCC
Confidence 236888999998775433 34588899999888753 2222222 3334788887654
No 28
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.58 E-value=0.0014 Score=61.18 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=97.8
Q ss_pred CCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEec
Q 017716 145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG 224 (367)
Q Consensus 145 G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG 224 (367)
..++.+..+.++.|++.+|+.. ..||.+. .+.++-|..|.++....| |.+.. +.+.+|++|.|.+...++++.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~G-i~l~~-s~~~~I~~N~i~~n~~GI~l~ 107 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYG-IYLMG-SSNNTISNNTISNNGYGIYLY 107 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCC-EEEEc-CCCcEEECCEecCCCceEEEe
Confidence 3456777899999999999976 4789987 788899999999999988 66644 445599999999887777665
Q ss_pred CCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECcccceee-ecCCceEEEEceeEec
Q 017716 225 ADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVC-ASVDSQIYSQCNIYEA 291 (367)
Q Consensus 225 ~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~~~yai~-~~~~a~i~~e~N~F~~ 291 (367)
.+. ..++-+|.|. ....-=.+.. ....|.+|.+.+...+++. ........+.+|.|.+
T Consensus 108 ~s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 108 GSS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred eCC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence 443 3678888887 3333333332 5678999999887668887 5555667778999943
No 29
>PLN02793 Probable polygalacturonase
Probab=97.56 E-value=0.0031 Score=65.42 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=92.3
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (367)
|++.+++||.|++|+++....+ .|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|++|.|..-+-+..
T Consensus 180 i~f~~~~nv~v~gitl~nSp~~---~i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQM---HIAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEeeccEEEECeEEEcCCCe---EEEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence 6777899999999999987542 46676 78999999999963 5799 899 578999999999999888888
Q ss_pred ecCCCCCCCCcceeEEEecceecCCCC-------CCCc-cccCeeEEEcceEECccccee--ee---c--CCceEEEEce
Q 017716 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPR-VRYAKVHLYNNYTRNWGIYAV--CA---S--VDSQIYSQCN 287 (367)
Q Consensus 223 iG~sd~~~~d~~~~VT~hhN~f~~~~~-------R~Pr-~r~G~~Hv~NN~~~n~~~yai--~~---~--~~a~i~~e~N 287 (367)
+.... -+|++.++.+..... +... ...-.+.|.|+.+.+.. +++ -. + .-..|.+++-
T Consensus 254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence 76432 157776666532111 1100 00113677887777642 332 11 1 1235666777
Q ss_pred eEecCCcceeee
Q 017716 288 IYEAGQKKMAFK 299 (367)
Q Consensus 288 ~F~~g~~~~v~~ 299 (367)
..++...+...+
T Consensus 326 ~m~nv~~pI~I~ 337 (443)
T PLN02793 326 FMENVSNPIIID 337 (443)
T ss_pred EEecCCceEEEE
Confidence 777766665554
No 30
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.54 E-value=0.00085 Score=66.58 Aligned_cols=133 Identities=19% Similarity=0.306 Sum_probs=90.1
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (367)
|++.+++|+.|++|+++....+ .+.+. .+++|+|++.++.. ..|| ||+ ..+.+|+|.+|.|...+-+.-
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence 7888899999999999987653 57776 79999999999963 4789 899 468999999999998887777
Q ss_pred ecCCCCCCCCcceeEEEecceecCCCCCCCcccc-----C-------eeEEEcceEECcccceeee--cCC-----ceEE
Q 017716 223 IGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-----A-------KVHLYNNYTRNWGIYAVCA--SVD-----SQIY 283 (367)
Q Consensus 223 iG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-----G-------~~Hv~NN~~~n~~~yai~~--~~~-----a~i~ 283 (367)
+.+... +|++.+++|.+... +.. + .+.+.|+.+.+.. +++.. ..+ ..|.
T Consensus 169 iks~~~-------ni~v~n~~~~~ghG----isiGS~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iKt~~~~~G~v~nI~ 236 (326)
T PF00295_consen 169 IKSGSG-------NILVENCTCSGGHG----ISIGSEGSGGSQNDIRNVTFENCTIINTD-NGIRIKTWPGGGGYVSNIT 236 (326)
T ss_dssp ESSEEC-------EEEEESEEEESSSE----EEEEEESSSSE--EEEEEEEEEEEEESES-EEEEEEEETTTSEEEEEEE
T ss_pred cccccc-------ceEEEeEEEecccc----ceeeeccCCccccEEEeEEEEEEEeeccc-eEEEEEEecccceEEeceE
Confidence 654421 68888888865433 221 2 3456666665532 44322 112 2566
Q ss_pred EEceeEecCCcceee
Q 017716 284 SQCNIYEAGQKKMAF 298 (367)
Q Consensus 284 ~e~N~F~~g~~~~v~ 298 (367)
+|+...++...+...
T Consensus 237 f~ni~~~~v~~pi~i 251 (326)
T PF00295_consen 237 FENITMENVKYPIFI 251 (326)
T ss_dssp EEEEEEEEESEEEEE
T ss_pred EEEEEecCCceEEEE
Confidence 666666666555444
No 31
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.52 E-value=0.0038 Score=64.07 Aligned_cols=138 Identities=13% Similarity=0.141 Sum_probs=94.2
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (367)
|.+..++||.|++|+|+....+ .|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|.+|.|..-+-+.-
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w---~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFF---HIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCe---EEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence 5677899999999999987543 56676 78999999999864 5799 899 578999999999999888888
Q ss_pred ecCCCCCCCCcceeEEEecceecCCC-------CCCCc-cccCeeEEEcceEECcccceeee---------cCCceEEEE
Q 017716 223 IGADPSHVADRCIRVTIHHCFFDGTR-------QRHPR-VRYAKVHLYNNYTRNWGIYAVCA---------SVDSQIYSQ 285 (367)
Q Consensus 223 iG~sd~~~~d~~~~VT~hhN~f~~~~-------~R~Pr-~r~G~~Hv~NN~~~n~~~yai~~---------~~~a~i~~e 285 (367)
+.+... +|++-++...... .+..- -....+.+.|+.+.+.. +++.. +.-..|.+|
T Consensus 232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence 865421 4666555543211 11000 01124678888887653 33322 111367778
Q ss_pred ceeEecCCcceeee
Q 017716 286 CNIYEAGQKKMAFK 299 (367)
Q Consensus 286 ~N~F~~g~~~~v~~ 299 (367)
+-.+++...+.+++
T Consensus 304 ni~m~~v~~pI~i~ 317 (404)
T PLN02188 304 NIVMNNVTNPIIID 317 (404)
T ss_pred eEEecCccceEEEE
Confidence 88888777776654
No 32
>PLN02176 putative pectinesterase
Probab=97.44 E-value=0.0019 Score=64.87 Aligned_cols=104 Identities=14% Similarity=0.292 Sum_probs=69.4
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe--CC--------cEEEee
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--GK--------GLRLKE 152 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~--G~--------gi~i~~ 152 (367)
+.+|.| |+++||++ +..+++|+-..|+.+ +.|.|. +|+||.|.|.+-+|. +. .+.+ .
T Consensus 44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~ 120 (340)
T PLN02176 44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-Y 120 (340)
T ss_pred CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-E
Confidence 445665 78899965 223455555679984 667774 689999998655543 11 2455 4
Q ss_pred eccEEEeeeEEeCCCC-------CCCCceEecCCCceEEEEceeeecCCCCceE
Q 017716 153 CEHVIICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (367)
Q Consensus 153 a~NVIIRnL~i~~g~~-------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglid 199 (367)
+++++.+||+|+.... ...-|+.+.-.+..+-+.+|.|.-..|=|++
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~ 174 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFD 174 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEe
Confidence 8999999999997532 1123444443578899999999766555544
No 33
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.21 E-value=0.0049 Score=63.77 Aligned_cols=162 Identities=18% Similarity=0.222 Sum_probs=94.4
Q ss_pred cceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC-------------------CCCCceEecCCCceEEEEceeeec
Q 017716 132 KTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG-------------------PDVDAIQIKPKSKHIWIDRCSLRD 192 (367)
Q Consensus 132 kTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~-------------------~d~DaI~i~~~s~nVWIDHcsfs~ 192 (367)
+||.|.|....-...+|.+++|++|.|++.+|++... ....+|.+. .++++.|.+|+++.
T Consensus 122 LtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V~~N~I~g 200 (455)
T TIGR03808 122 LTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIVARNTIIG 200 (455)
T ss_pred eEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEEECCEEEc
Confidence 3555555443334456788889999999999987520 112346665 67789999999988
Q ss_pred CCCCceEeecC-----------------------------------CceEEEeCceecCCCceeEecCCCCCC-------
Q 017716 193 YDDGLIDITRE-----------------------------------STDITVSRCHFSSHDKTMLIGADPSHV------- 230 (367)
Q Consensus 193 ~~Dglidi~~~-----------------------------------s~~VTIS~n~f~~H~k~~LiG~sd~~~------- 230 (367)
..|+.|-+.+. +.+++|+.|.++++.+-.+.+.+.++.
T Consensus 201 ~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~~ 280 (455)
T TIGR03808 201 ANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNSV 280 (455)
T ss_pred cCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcEe
Confidence 88865555422 467888888888887544433322211
Q ss_pred CC-c--ceeEEE-ec-ceecCCCCCCCc-----ccc---Ce-eEEEcceEECcc-----------cceeeecCCceEEEE
Q 017716 231 AD-R--CIRVTI-HH-CFFDGTRQRHPR-----VRY---AK-VHLYNNYTRNWG-----------IYAVCASVDSQIYSQ 285 (367)
Q Consensus 231 ~d-~--~~~VT~-hh-N~f~~~~~R~Pr-----~r~---G~-~Hv~NN~~~n~~-----------~yai~~~~~a~i~~e 285 (367)
.+ | .++.-| ++ +.+.++....-. +.| |. .-+-.|++.|.. ..+++..+|+.-.+-
T Consensus 281 ~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ead~~~~ 360 (455)
T TIGR03808 281 SDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYVEADTAVT 360 (455)
T ss_pred eeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEEEecceec
Confidence 11 1 122222 22 344443333332 223 33 355667766532 234566667777777
Q ss_pred ceeEecCCc
Q 017716 286 CNIYEAGQK 294 (367)
Q Consensus 286 ~N~F~~g~~ 294 (367)
+|+.|+.+.
T Consensus 361 ~n~~e~ap~ 369 (455)
T TIGR03808 361 GNVVENAPS 369 (455)
T ss_pred cceecCCcc
Confidence 888887764
No 34
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.18 E-value=0.023 Score=60.51 Aligned_cols=121 Identities=21% Similarity=0.458 Sum_probs=81.0
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i 148 (367)
+.+|.| ++++||++ +..++||+-..|+.+ +.|.|. +|+||+|.|.+.+|. +. + +
T Consensus 235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 312 (541)
T PLN02416 235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL 312 (541)
T ss_pred CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence 345666 68888864 345677776789884 667773 689999998655543 21 1 3
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS 210 (367)
.+ .+++++.|||+|+...+. ..-|+.++-.+.++-+-+|.|.-.. .|.+|+.-+.-.+-++
T Consensus 313 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 391 (541)
T PLN02416 313 AV-SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVFQ 391 (541)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEEEe
Confidence 44 489999999999976432 2234444334788999999996543 4556666666667777
Q ss_pred CceecC
Q 017716 211 RCHFSS 216 (367)
Q Consensus 211 ~n~f~~ 216 (367)
+|.|..
T Consensus 392 ~c~i~~ 397 (541)
T PLN02416 392 ACNIVS 397 (541)
T ss_pred ccEEEE
Confidence 787753
No 35
>PLN02773 pectinesterase
Probab=97.02 E-value=0.047 Score=54.46 Aligned_cols=114 Identities=16% Similarity=0.279 Sum_probs=71.9
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEeC-C-----------------------c
Q 017716 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLTG-K-----------------------G 147 (367)
Q Consensus 99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~G-~-----------------------g 147 (367)
|+++||++ ...+++||-..|+.+ +.|.|. .|+||.|.+..-+|.- . .
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 68888865 223455565679884 667773 5799999875444321 0 1
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEE
Q 017716 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITV 209 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~VTI 209 (367)
+.+ .+++++++||+|+..... ..-|+.+.-.+..+-+.+|.|.-..| |.+|+.-+.-.+-+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~IeG~VDFIFG~g~a~F 175 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTALL 175 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEeecccEEeeccEEEE
Confidence 233 489999999999976432 23344444357889999999865444 44444444445556
Q ss_pred eCceec
Q 017716 210 SRCHFS 215 (367)
Q Consensus 210 S~n~f~ 215 (367)
.+|.|.
T Consensus 176 e~c~i~ 181 (317)
T PLN02773 176 EHCHIH 181 (317)
T ss_pred EeeEEE
Confidence 666664
No 36
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.01 E-value=0.037 Score=60.16 Aligned_cols=197 Identities=19% Similarity=0.363 Sum_probs=114.5
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i 148 (367)
+.+|.| ++++||++ +..++||+-..|++ .+.|.|. .|+||+|.|.+-+|. +. | +
T Consensus 255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~ 332 (670)
T PLN02217 255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV 332 (670)
T ss_pred CCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence 445666 68889975 23456666667988 4567775 478999998665553 21 1 3
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS 210 (367)
.+ .+++++.|||+|+...+. ..-|+-++-.+....+.+|.|.-.. .|.+|+.-+.-.+-++
T Consensus 333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 411 (670)
T PLN02217 333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ 411 (670)
T ss_pred EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence 33 489999999999976532 2345555445788999999996433 5566666666677888
Q ss_pred CceecCCC-----ceeEecCCCCCCCCcceeEEEecceecCCCCCC------------CccccCeeEEEcceEEC-----
Q 017716 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH------------PRVRYAKVHLYNNYTRN----- 268 (367)
Q Consensus 211 ~n~f~~H~-----k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~------------Pr~r~G~~Hv~NN~~~n----- 268 (367)
+|.|.-.. ++.+--.+... .+...-+.|++|.+.....-. |.-.+..+-+.|.++.+
T Consensus 412 ~C~I~~r~~~~~~~~~ITAqgr~~-~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~P~ 490 (670)
T PLN02217 412 NCTLLVRKPLLNQACPITAHGRKD-PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPPE 490 (670)
T ss_pred ccEEEEccCCCCCceeEecCCCCC-CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEcCc
Confidence 88886321 12221111000 111235788998776542111 22234566677766542
Q ss_pred -cccceeeecCCceEEEEceeEecCC
Q 017716 269 -WGIYAVCASVDSQIYSQCNIYEAGQ 293 (367)
Q Consensus 269 -~~~yai~~~~~a~i~~e~N~F~~g~ 293 (367)
|....-....+.-.+.|.+-+-.|.
T Consensus 491 GW~~W~~~~~~~t~~yaEY~n~GpGa 516 (670)
T PLN02217 491 GWQPWLGDFGLNTLFYSEVQNTGPGA 516 (670)
T ss_pred ccCccCCCCCCCceEEEEeccccCCC
Confidence 3222111222334555766665553
No 37
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.00 E-value=0.0078 Score=63.67 Aligned_cols=120 Identities=23% Similarity=0.450 Sum_probs=78.7
Q ss_pred CCCCCh---hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-----Cc--------
Q 017716 93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG-------- 147 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~~-----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G-----~g-------- 147 (367)
+.+|.| ++++||++. ..+++|+-..|+++ +.|.|. +|+||+|.|.+-+|. + .+
T Consensus 230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT 307 (529)
T PLN02170 230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT 307 (529)
T ss_pred cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence 445655 788999732 23666666789984 667773 799999998665553 2 11
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEE
Q 017716 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITV 209 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~VTI 209 (367)
+.+ .+++++.|||+|+...+. ..-|+.++-.+..+.+.+|.|.-..| |.+|+.-+.-..-+
T Consensus 308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avF 386 (529)
T PLN02170 308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAVVF 386 (529)
T ss_pred EEE-EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceecccceEEE
Confidence 333 489999999999986432 23444444357889999999975544 44555555555666
Q ss_pred eCceec
Q 017716 210 SRCHFS 215 (367)
Q Consensus 210 S~n~f~ 215 (367)
++|.|.
T Consensus 387 q~C~I~ 392 (529)
T PLN02170 387 QSCNIA 392 (529)
T ss_pred eccEEE
Confidence 666664
No 38
>PLN02432 putative pectinesterase
Probab=96.99 E-value=0.009 Score=58.95 Aligned_cols=111 Identities=15% Similarity=0.269 Sum_probs=73.5
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe----CC------cEEEeeeccEEEeee
Q 017716 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT----GK------GLRLKECEHVIICNL 161 (367)
Q Consensus 99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~gi~I~----G~------gi~i~~a~NVIIRnL 161 (367)
|+++||++- ..+++|+-..|+. .+.|.| .+|+||.|.+..-++. +. .+.+ .+++++++||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 688888652 2345555567888 466777 3789999997655543 11 2444 4899999999
Q ss_pred EEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716 162 EFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (367)
Q Consensus 162 ~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~ 215 (367)
+|+...+...-|+.+.-.+.++.+.+|.|.-..|=|++- ...--+.+|+|+
T Consensus 102 t~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~ 152 (293)
T PLN02432 102 TIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIE 152 (293)
T ss_pred EEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEE
Confidence 999865433445555435788999999998777776642 223444555555
No 39
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.99 E-value=0.049 Score=57.43 Aligned_cols=152 Identities=17% Similarity=0.366 Sum_probs=94.3
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i 148 (367)
+.+|.| |+++||++ +..+++|+-..|++ .+.|.|. +|+||+|.|.+-+|. +. + +
T Consensus 202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv 279 (509)
T PLN02488 202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV 279 (509)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence 345655 68889865 23356666677988 4667774 689999998665554 21 1 2
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS 210 (367)
.+ .++++|.|||+|+...+. ..-|+.++-.+....+.+|.|.-.. .|.+|+.-+.-.+-++
T Consensus 280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq 358 (509)
T PLN02488 280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ 358 (509)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence 33 478999999999976432 2455655545788999999996543 4556666666667788
Q ss_pred CceecCCC-----ceeEecCCCCCCCCcceeEEEecceecCCC
Q 017716 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTR 248 (367)
Q Consensus 211 ~n~f~~H~-----k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~ 248 (367)
+|.|.... ++.+--.+-.. .+...-+.||+|.+....
T Consensus 359 ~C~I~sr~~~~~~~~~ITAq~R~~-~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 359 FCQIVARQPMMGQSNVITAQSRES-KDDNSGFSIQKCNITASS 400 (509)
T ss_pred ccEEEEecCCCCCCEEEEeCCCCC-CCCCcEEEEEeeEEecCC
Confidence 88886321 22222111100 111124788888776544
No 40
>smart00656 Amb_all Amb_all domain.
Probab=96.98 E-value=0.016 Score=53.38 Aligned_cols=132 Identities=18% Similarity=0.155 Sum_probs=83.3
Q ss_pred cCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC-----CCCC-ceEecCCCceEEEEceeeecCCCCceEeecC
Q 017716 130 SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG-----PDVD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRE 203 (367)
Q Consensus 130 snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~-----~d~D-aI~i~~~s~nVWIDHcsfs~~~Dglidi~~~ 203 (367)
.|++|.+........+.+|.+.+++||+|.+.+|..+.. ...| .+.+..++.+|=|-.|.|....-+++--..+
T Consensus 45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d 124 (190)
T smart00656 45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD 124 (190)
T ss_pred eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence 477777753322233557888889999999999997621 1134 4456546788888888887654444433222
Q ss_pred C------ceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECc
Q 017716 204 S------TDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNW 269 (367)
Q Consensus 204 s------~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~ 269 (367)
. -.||+.+|+|.+.. +..+. . |.-.+=+-+|+|.+.....--++. +++.+.||||++.
T Consensus 125 ~~~~~~~~~vT~h~N~~~~~~-----~R~P~-~--r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 125 SDTDDGKMRVTIAHNYFGNLR-----QRAPR-V--RFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CccccccceEEEECcEEcCcc-----cCCCc-c--cCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 2 26999999997532 11111 0 111567778999887644333333 5799999999863
No 41
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.059 Score=57.21 Aligned_cols=121 Identities=20% Similarity=0.388 Sum_probs=79.8
Q ss_pred CCCCCCh---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------------c
Q 017716 92 LADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------G 147 (367)
Q Consensus 92 l~d~gpG---SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-------------g 147 (367)
.+.+|.| |+++||++- ..+++|+-..|+++ +.|.|. +|+||+|.|.+-++. +. .
T Consensus 222 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT 299 (530)
T PLN02933 222 VAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTAT 299 (530)
T ss_pred ECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceE
Confidence 3445665 688898652 23556666679985 667774 688999998654443 11 1
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEE
Q 017716 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV 209 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTI 209 (367)
+.+ .+++++.|||+|+...+. ..-|+.++-.+..+-+.+|.|.-.. .|.+|+.-+.-..-+
T Consensus 300 ~~v-~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG~a~avF 378 (530)
T PLN02933 300 VGV-KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNAAVVF 378 (530)
T ss_pred EEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceeccCceEEE
Confidence 334 489999999999976432 2344544435788999999997544 455555555556667
Q ss_pred eCceec
Q 017716 210 SRCHFS 215 (367)
Q Consensus 210 S~n~f~ 215 (367)
++|.|.
T Consensus 379 q~C~i~ 384 (530)
T PLN02933 379 QNCSLY 384 (530)
T ss_pred eccEEE
Confidence 777775
No 42
>PLN02497 probable pectinesterase
Probab=96.83 E-value=0.1 Score=52.41 Aligned_cols=98 Identities=12% Similarity=0.215 Sum_probs=65.2
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eC---------CcEEEeeeccEEEeee
Q 017716 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TG---------KGLRLKECEHVIICNL 161 (367)
Q Consensus 99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I-~G---------~gi~i~~a~NVIIRnL 161 (367)
|+++||++ +..+++|+-..|+. ++.|.|. +++||.|.|.+-++ .. ..+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 68888865 23445555567988 4667773 78999999754333 21 12444 4899999999
Q ss_pred EEeCCCCC--------CCCceEecCCCceEEEEceeeecCCCCceE
Q 017716 162 EFEGGKGP--------DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (367)
Q Consensus 162 ~i~~g~~~--------d~DaI~i~~~s~nVWIDHcsfs~~~Dglid 199 (367)
+|+..... ..-|+.+.-.+.++-+.+|.|.-..|=|++
T Consensus 123 T~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~ 168 (331)
T PLN02497 123 TFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWD 168 (331)
T ss_pred EEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceee
Confidence 99975321 123454443578899999999876666553
No 43
>PLN02304 probable pectinesterase
Probab=96.82 E-value=0.02 Score=58.32 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=76.1
Q ss_pred CCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEeC--------------CcEE
Q 017716 94 DDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLTG--------------KGLR 149 (367)
Q Consensus 94 d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~gi~I~G--------------~gi~ 149 (367)
.+|.| |+++||++ +..+++|+-..|+.+ +.|.| .+|+||.|.|.+-++.- ..+.
T Consensus 81 ~dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~ 158 (379)
T PLN02304 81 PNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQ 158 (379)
T ss_pred CCCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEE
Confidence 34555 79999975 233566666779884 66777 37899999986544421 0133
Q ss_pred EeeeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716 150 LKECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (367)
Q Consensus 150 i~~a~NVIIRnL~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~ 215 (367)
+ .+++++.+||+|+.... ...-|+.+.-.+..+-+.+|.|.-..|-|++- ...--+.+|+|.
T Consensus 159 v-~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIe 226 (379)
T PLN02304 159 V-FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQ 226 (379)
T ss_pred E-ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEc
Confidence 3 48999999999997532 11234444435788999999998887777653 223445666665
No 44
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.82 E-value=0.01 Score=63.30 Aligned_cols=120 Identities=17% Similarity=0.325 Sum_probs=80.9
Q ss_pred CCCCCh---hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C------Cc-------
Q 017716 93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------KG------- 147 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~~-----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G------~g------- 147 (367)
+.+|.| |+++||++- ..+.||+-..|+++ +.|.|. .|+||+|.|.+-+|. + .|
T Consensus 246 a~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~sa 323 (553)
T PLN02708 246 CKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTA 323 (553)
T ss_pred CCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceE
Confidence 445555 688888642 34566666789984 566663 689999998655553 1 12
Q ss_pred -EEEeeeccEEEeeeEEeCCCCCC-CCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEE
Q 017716 148 -LRLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDIT 208 (367)
Q Consensus 148 -i~i~~a~NVIIRnL~i~~g~~~d-~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VT 208 (367)
+.+ .+++++.|||+|+...+.+ .-|+.++-.+..+.+.+|.|.-.. .|.+|+.-+.-.+-
T Consensus 324 T~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~av 402 (553)
T PLN02708 324 TVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAV 402 (553)
T ss_pred EEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCceEE
Confidence 333 4899999999999865432 345555546889999999996543 45566666666667
Q ss_pred EeCceec
Q 017716 209 VSRCHFS 215 (367)
Q Consensus 209 IS~n~f~ 215 (367)
+++|.|.
T Consensus 403 fq~c~i~ 409 (553)
T PLN02708 403 FQDCAIL 409 (553)
T ss_pred EEccEEE
Confidence 7777765
No 45
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.79 E-value=0.069 Score=56.88 Aligned_cols=148 Identities=14% Similarity=0.350 Sum_probs=92.4
Q ss_pred CCCh---hHHHhhhcC---C----CeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------------c
Q 017716 95 DGPG---SLREGCRMK---E----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------G 147 (367)
Q Consensus 95 ~gpG---SLr~Ai~~~---~----P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-------------g 147 (367)
+|.| |+++||++- . -|+||+-..|++ .+.|.|. .|+||+|.|.+-+|. +. .
T Consensus 230 dGsG~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT 307 (538)
T PLN03043 230 YGTDNFTTITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSST 307 (538)
T ss_pred CCCCCCcCHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceE
Confidence 4555 688888642 1 256666678998 4667773 689999998655543 21 1
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEE
Q 017716 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV 209 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTI 209 (367)
+.+ .++++|.|||+|+...+. ..-|+.++-.+..+-+.+|.|.-.. .|.+|+.-+.-.+-+
T Consensus 308 ~~v-~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avf 386 (538)
T PLN03043 308 FAV-SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIF 386 (538)
T ss_pred EEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeee
Confidence 334 479999999999976432 2345555445788999999996543 456666666677888
Q ss_pred eCceecCCC-----ceeEecCCCCCCCCcceeEEEecceecC
Q 017716 210 SRCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDG 246 (367)
Q Consensus 210 S~n~f~~H~-----k~~LiG~sd~~~~d~~~~VT~hhN~f~~ 246 (367)
++|.|.-.. ++++--.+... .+...-+.||+|.+..
T Consensus 387 q~c~i~~r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i~~ 427 (538)
T PLN03043 387 QNCNLYARKPMANQKNAFTAQGRTD-PNQNTGISIINCTIEA 427 (538)
T ss_pred eccEEEEecCCCCCCceEEecCCCC-CCCCceEEEEecEEec
Confidence 899886321 22222111111 0112357888887754
No 46
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.79 E-value=0.016 Score=61.60 Aligned_cols=104 Identities=23% Similarity=0.461 Sum_probs=70.5
Q ss_pred CCCCCh---hHHHhhhcC------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c-------
Q 017716 93 ADDGPG---SLREGCRMK------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G------- 147 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~~------~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g------- 147 (367)
+.+|.| |+++||++- ..+++|+-..|+++ +.|.|. +|+||+|.|.+-+|. +. +
T Consensus 228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa 305 (539)
T PLN02995 228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA 305 (539)
T ss_pred CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence 445666 788999752 23556665679984 567774 699999998655543 21 1
Q ss_pred -EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017716 148 -LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (367)
Q Consensus 148 -i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~Dglid 199 (367)
+.+ .+++++.|||+|+...+. ..-|+.++-.+....+.+|.|.-..|-|++
T Consensus 306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~ 358 (539)
T PLN02995 306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMV 358 (539)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhcc
Confidence 333 489999999999976432 234555544578899999999866555443
No 47
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.75 E-value=0.0078 Score=64.05 Aligned_cols=120 Identities=18% Similarity=0.449 Sum_probs=80.3
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------c------E
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------G------L 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-------g------i 148 (367)
+.+|.| |+++||++ ...|+||+-..|++ ++.|.|. +|+||+|.|.+.+|. +. + +
T Consensus 241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 318 (548)
T PLN02301 241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV 318 (548)
T ss_pred CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence 345666 78889865 23466667678998 4667774 689999998665553 21 1 2
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS 210 (367)
.+ .+++++.|||+|+...+. ..-|+.++-.+..+.+.+|.|.-.. .|.+|+.-+.-.+-++
T Consensus 319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 397 (548)
T PLN02301 319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQ 397 (548)
T ss_pred EE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeEEe
Confidence 33 479999999999976432 2344444435788999999997544 4555555556666677
Q ss_pred Cceec
Q 017716 211 RCHFS 215 (367)
Q Consensus 211 ~n~f~ 215 (367)
+|.|.
T Consensus 398 ~c~i~ 402 (548)
T PLN02301 398 NCKIV 402 (548)
T ss_pred ccEEE
Confidence 77765
No 48
>PLN02682 pectinesterase family protein
Probab=96.74 E-value=0.021 Score=58.08 Aligned_cols=111 Identities=15% Similarity=0.252 Sum_probs=70.9
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe------------CC--------cEEEe
Q 017716 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRLK 151 (367)
Q Consensus 99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~gi~I~------------G~--------gi~i~ 151 (367)
|+++||++- ..+++|+-..|+. .+.|.| .+++||.|.|.+-++. |. .+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 688898652 2345555567988 466777 4789999997544433 10 1344
Q ss_pred eeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716 152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (367)
Q Consensus 152 ~a~NVIIRnL~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~ 215 (367)
.+++++.+||+|+.... ...-|+.+.-.+.++-+.+|.|.-..|=|++- ...--+.+|+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 227 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE 227 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence 48899999999997532 11224444335788999999998777666543 223344555554
No 49
>PLN02665 pectinesterase family protein
Probab=96.73 E-value=0.099 Score=53.18 Aligned_cols=98 Identities=13% Similarity=0.236 Sum_probs=65.0
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC------------cEEEeeeccEEE
Q 017716 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK------------GLRLKECEHVII 158 (367)
Q Consensus 99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I-~G~------------gi~i~~a~NVII 158 (367)
|+++||++ +..++||+-..|+.+ +.|.|. +++||.|.+...++ ... .+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 78999975 223566666679884 667774 68899999754433 211 1333 4899999
Q ss_pred eeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceE
Q 017716 159 CNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (367)
Q Consensus 159 RnL~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglid 199 (367)
+||+|+.... ...-|+.++-.+..+-+.+|.|.-..|=|++
T Consensus 159 ~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 159 ANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred EeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEe
Confidence 9999997532 1123444433478899999999876666554
No 50
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.70 E-value=0.014 Score=61.85 Aligned_cols=120 Identities=18% Similarity=0.406 Sum_probs=77.3
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-----Cc--------E
Q 017716 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG--------L 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G-----~g--------i 148 (367)
+.+|.| |+++||++- ..+++|+-..|++ ++.|.|. +|+||+|.|.+-+|. + .+ +
T Consensus 211 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~ 288 (520)
T PLN02201 211 AADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATF 288 (520)
T ss_pred cCCCCCCccCHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEE
Confidence 335555 688898652 2355666667988 4667774 589999998654443 1 11 3
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~Dg-----------------lidi~~~s~~VTIS 210 (367)
.+ .+++++.+||+|+...+. ..-|+.++-.+..+-+.+|.|.-..|= .+|+.-+.-..-++
T Consensus 289 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~ 367 (520)
T PLN02201 289 AV-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFGDATAVFQ 367 (520)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEecCceEEEE
Confidence 33 489999999999976432 234454443578899999999765444 44554455555666
Q ss_pred Cceec
Q 017716 211 RCHFS 215 (367)
Q Consensus 211 ~n~f~ 215 (367)
+|.|.
T Consensus 368 ~C~i~ 372 (520)
T PLN02201 368 NCQIL 372 (520)
T ss_pred ccEEE
Confidence 66664
No 51
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.66 E-value=0.021 Score=61.12 Aligned_cols=120 Identities=19% Similarity=0.428 Sum_probs=79.7
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C------C--c------
Q 017716 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------K--G------ 147 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G------~--g------ 147 (367)
+.+|.| |+++||++- ..++||+-..|+++ +.|.|. +|+||+|.|.+-+|. + + +
T Consensus 264 a~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT 341 (572)
T PLN02990 264 AQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTAT 341 (572)
T ss_pred CCCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeE
Confidence 445666 788999752 23566666679884 667774 689999998654443 1 1 1
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEE
Q 017716 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV 209 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTI 209 (367)
+.+ .+++++.|||+|+...+. ..-|+.++-.+....+.+|.|.-.. .|.+|+.-+.-..-+
T Consensus 342 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf 420 (572)
T PLN02990 342 VAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAKVVL 420 (572)
T ss_pred EEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCceEEE
Confidence 233 489999999999976432 2345555435788999999996543 455565555566667
Q ss_pred eCceec
Q 017716 210 SRCHFS 215 (367)
Q Consensus 210 S~n~f~ 215 (367)
++|.|.
T Consensus 421 ~~C~i~ 426 (572)
T PLN02990 421 QNCNIV 426 (572)
T ss_pred EccEEE
Confidence 777775
No 52
>PLN02314 pectinesterase
Probab=96.59 E-value=0.017 Score=62.06 Aligned_cols=120 Identities=20% Similarity=0.396 Sum_probs=79.1
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i 148 (367)
+.+|.| |+++||++ +..++||+-..|+++ +.|.|. .|+||+|.|.+-+|. +. + +
T Consensus 283 a~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~ 360 (586)
T PLN02314 283 AKDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATF 360 (586)
T ss_pred CCCCCCCccCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEE
Confidence 334555 68889865 234666666789984 567774 588999998655443 21 1 3
Q ss_pred EEeeeccEEEeeeEEeCCCCCC-CCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~d-~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~VTIS 210 (367)
.+ .+++++.|||+|+...+.+ .-|+.++-++....+.+|.|.-..| |.+|+.-+.-.+-++
T Consensus 361 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avf~ 439 (586)
T PLN02314 361 AA-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQ 439 (586)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceeccCceeeee
Confidence 33 4899999999999764322 3455554457889999999975544 445555555556667
Q ss_pred Cceec
Q 017716 211 RCHFS 215 (367)
Q Consensus 211 ~n~f~ 215 (367)
+|.|.
T Consensus 440 ~c~i~ 444 (586)
T PLN02314 440 NCNIQ 444 (586)
T ss_pred ccEEE
Confidence 77664
No 53
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.59 E-value=0.085 Score=56.17 Aligned_cols=115 Identities=19% Similarity=0.410 Sum_probs=77.2
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC-----c--------EEEeeeccEE
Q 017716 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHVI 157 (367)
Q Consensus 99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I-~G~-----g--------i~i~~a~NVI 157 (367)
|+++||++ +..++|||-..|++ .+.|.|. .|+||+|.|.+-++ .+. + +.+ .+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence 68888865 23466677678988 4567774 68999999865544 321 1 233 489999
Q ss_pred EeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEeCceecC
Q 017716 158 ICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSS 216 (367)
Q Consensus 158 IRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS~n~f~~ 216 (367)
.|||+|+...+. ..-|+.++-.+.++-+.+|.|.-.. .|.+|+.-+.-..-+++|.|.-
T Consensus 323 a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~ 399 (537)
T PLN02506 323 ARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYT 399 (537)
T ss_pred EEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCceeEEeccEEEE
Confidence 999999976432 2344444435788999999996543 4556666666667777887763
No 54
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.59 E-value=0.019 Score=61.73 Aligned_cols=120 Identities=21% Similarity=0.391 Sum_probs=77.5
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i 148 (367)
+.+|.| |+++||++ ...++||+-..|+++ +.|.|. +|+||+|.|.+-+|. +. + +
T Consensus 290 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 367 (596)
T PLN02745 290 AKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATF 367 (596)
T ss_pred CCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEE
Confidence 334555 78889975 233566665679884 567774 589999998655543 21 1 3
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~Dg-----------------lidi~~~s~~VTIS 210 (367)
.+ .+++++.+||+|+...+. ..-|+.++-.+..+.+.+|.|.-..|= .+|+.-+.-..-++
T Consensus 368 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~ 446 (596)
T PLN02745 368 VA-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQ 446 (596)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEEEE
Confidence 33 489999999999976432 234444443578899999999765444 44444444555556
Q ss_pred Cceec
Q 017716 211 RCHFS 215 (367)
Q Consensus 211 ~n~f~ 215 (367)
+|.|.
T Consensus 447 ~C~i~ 451 (596)
T PLN02745 447 NCLIF 451 (596)
T ss_pred ecEEE
Confidence 66554
No 55
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.56 E-value=0.021 Score=61.03 Aligned_cols=120 Identities=16% Similarity=0.421 Sum_probs=79.1
Q ss_pred CCCCCh---hHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC------------
Q 017716 93 ADDGPG---SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK------------ 146 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~~-------~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~------------ 146 (367)
+.+|.| |+++||++- ..++||+-..|+++ +.|.|. .|+||+|.|.+-+|. +.
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 445665 688888652 22456665679984 667773 688999998654443 21
Q ss_pred -cEEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceE
Q 017716 147 -GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDI 207 (367)
Q Consensus 147 -gi~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~V 207 (367)
.+.+ .+++++.|||+|+...+. ..-|+.++-.+..+.+.+|.|.-.. .|.+|+.-+.-.+
T Consensus 333 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 411 (566)
T PLN02713 333 ATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 411 (566)
T ss_pred eeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence 1344 479999999999986432 2345544445788999999996544 4455555566667
Q ss_pred EEeCceec
Q 017716 208 TVSRCHFS 215 (367)
Q Consensus 208 TIS~n~f~ 215 (367)
-+++|.|.
T Consensus 412 vfq~C~i~ 419 (566)
T PLN02713 412 VFQNCNLY 419 (566)
T ss_pred EEeccEEE
Confidence 77777775
No 56
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.52 E-value=0.029 Score=59.60 Aligned_cols=101 Identities=22% Similarity=0.463 Sum_probs=69.6
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecC-----------CceEEEeCceec
Q 017716 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE-----------STDITVSRCHFS 215 (367)
Q Consensus 147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~-----------s~~VTIS~n~f~ 215 (367)
++....++|+.++||+|..-.....|||.+. .++||.|+-|.|+-+.|- |-++.+ +.+|+|++|+|.
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~-I~iksg~~~~~~~~~~~~~~i~i~~c~~~ 340 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDC-IAIKSGAGLDGKKGYGPSRNIVIRNCYFS 340 (542)
T ss_pred EEeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCce-EEeecccCCcccccccccccEEEecceec
Confidence 4566789999999999987554467999997 899999999999875544 444432 457999999998
Q ss_pred CCCceeEecCCCCCCCCcc-eeEEEecceecCCCCCCCcc
Q 017716 216 SHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRV 254 (367)
Q Consensus 216 ~H~k~~LiG~sd~~~~d~~-~~VT~hhN~f~~~~~R~Pr~ 254 (367)
.-.-+..+|+.- +++ .+|++-.|.|.+ ..|-=|+
T Consensus 341 ~ghG~~v~Gse~----~ggv~ni~ved~~~~~-~d~GLRi 375 (542)
T COG5434 341 SGHGGLVLGSEM----GGGVQNITVEDCVMDN-TDRGLRI 375 (542)
T ss_pred ccccceEeeeec----CCceeEEEEEeeeecc-Ccceeee
Confidence 432333344321 122 367777777776 4444444
No 57
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.45 E-value=0.024 Score=60.65 Aligned_cols=118 Identities=17% Similarity=0.358 Sum_probs=77.9
Q ss_pred CCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe--------CC------cEEE
Q 017716 95 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GLRL 150 (367)
Q Consensus 95 ~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~--------G~------gi~i 150 (367)
+|.| |+++||++ +..+.||+-..|+++ +.|.|. .|+||+|.|.+-+|. |. .+.+
T Consensus 265 dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v 342 (565)
T PLN02468 265 DGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV 342 (565)
T ss_pred CCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE
Confidence 4555 67788865 233566666789884 667774 578999998655443 11 1333
Q ss_pred eeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEeCc
Q 017716 151 KECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRC 212 (367)
Q Consensus 151 ~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS~n 212 (367)
.+++++.|||+|+...+. ..-|+.++-.+..+.+.+|.|.-.. .|.+|+.-+.-.+-+++|
T Consensus 343 -~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avfq~c 421 (565)
T PLN02468 343 -FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGNSAVVFQNC 421 (565)
T ss_pred -ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceeeccceEEEecc
Confidence 478999999999976432 2344444435788999999996543 455566666666677777
Q ss_pred eec
Q 017716 213 HFS 215 (367)
Q Consensus 213 ~f~ 215 (367)
.|.
T Consensus 422 ~i~ 424 (565)
T PLN02468 422 NIL 424 (565)
T ss_pred EEE
Confidence 774
No 58
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.43 E-value=0.018 Score=61.80 Aligned_cols=121 Identities=17% Similarity=0.363 Sum_probs=81.6
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------------cE
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GL 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-------------gi 148 (367)
+.+|.| |+++||++ +..++||+-..|++ .+.+.|. .|++|+|.|.+-+|. +. .+
T Consensus 280 a~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~ 357 (587)
T PLN02313 280 AADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATV 357 (587)
T ss_pred CCCCCCCCccHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEE
Confidence 334555 68888865 23456666677988 4667774 589999998655543 21 12
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecC-----------------CCCceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDY-----------------DDGLIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~-----------------~Dglidi~~~s~~VTIS 210 (367)
.+ .+++++.|||+|+...+. ..-|+.++-.+....+.+|.|.-. -.|.+|+.-+.-.+-++
T Consensus 358 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq 436 (587)
T PLN02313 358 AA-VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQ 436 (587)
T ss_pred EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEE
Confidence 33 479999999999976432 223444443578899999999643 25666776677778888
Q ss_pred CceecC
Q 017716 211 RCHFSS 216 (367)
Q Consensus 211 ~n~f~~ 216 (367)
+|.|.-
T Consensus 437 ~c~i~~ 442 (587)
T PLN02313 437 DCDINA 442 (587)
T ss_pred ccEEEE
Confidence 888863
No 59
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.23 E-value=0.04 Score=59.24 Aligned_cols=121 Identities=20% Similarity=0.392 Sum_probs=79.0
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (367)
Q Consensus 93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i 148 (367)
+.+|.| |+++||++ +..++||+-..|+++-+ .|.|. +|+||+|.|.+-+|. +. + +
T Consensus 277 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~ 355 (587)
T PLN02484 277 SKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASF 355 (587)
T ss_pred CCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEE
Confidence 344554 68889865 23456666678998421 47774 689999998655543 21 1 2
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210 (367)
Q Consensus 149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS 210 (367)
.+ .+++++.|||+|+...+. ..-|+.++-.+.+..+.+|.|.-.. .|.+|+.-+.-..-++
T Consensus 356 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 434 (587)
T PLN02484 356 AA-TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQ 434 (587)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEe
Confidence 33 489999999999976432 2344444435788999999996544 4455555555666677
Q ss_pred Cceec
Q 017716 211 RCHFS 215 (367)
Q Consensus 211 ~n~f~ 215 (367)
+|.|.
T Consensus 435 ~C~i~ 439 (587)
T PLN02484 435 NCSIY 439 (587)
T ss_pred ccEEE
Confidence 77775
No 60
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.13 E-value=0.038 Score=54.60 Aligned_cols=110 Identities=17% Similarity=0.367 Sum_probs=65.9
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceE-EeCC-------------cEEEeeeccEE
Q 017716 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-------------GLRLKECEHVI 157 (367)
Q Consensus 99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~-I~G~-------------gi~i~~a~NVI 157 (367)
|+++||+. ...+++|+-..|+.+ +.|.|. +++||+|.+..-+ |.+. .|.+. +++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-cccee
Confidence 58888875 233556666789984 667775 5899999975444 3331 14554 89999
Q ss_pred EeeeEEeCCCCC---CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC
Q 017716 158 ICNLEFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS 216 (367)
Q Consensus 158 IRnL~i~~g~~~---d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~ 216 (367)
++||+|+...+. ..-||.+. +.++.+.+|.|.-..|-|+.- ....-+.+|+|..
T Consensus 91 ~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG 147 (298)
T PF01095_consen 91 AENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG 147 (298)
T ss_dssp EEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred eeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEEe
Confidence 999999974321 23466664 678999999998888876643 2355667777763
No 61
>PLN02634 probable pectinesterase
Probab=96.12 E-value=0.085 Score=53.50 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=64.2
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe------------CC--------cEEEe
Q 017716 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRLK 151 (367)
Q Consensus 99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~gi~I~------------G~--------gi~i~ 151 (367)
|+++||++- ..+++|+-..|+. .+.|.| .+|+||.|.|...+|. |. .+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 477888642 2344555567988 456777 3689999998665553 10 1333
Q ss_pred eeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceE
Q 017716 152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (367)
Q Consensus 152 ~a~NVIIRnL~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglid 199 (367)
.+++++.+||+|+.... ...-|+.+.-.+.++-+.+|.|.-..|=|++
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~ 200 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCD 200 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeee
Confidence 47899999999997532 1223444433477899999999876666554
No 62
>PLN02916 pectinesterase family protein
Probab=96.07 E-value=0.053 Score=57.19 Aligned_cols=114 Identities=17% Similarity=0.341 Sum_probs=74.1
Q ss_pred hHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-------C------cEEEeeec
Q 017716 99 SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K------GLRLKECE 154 (367)
Q Consensus 99 SLr~Ai~~~-------~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G-------~------gi~i~~a~ 154 (367)
|+++||++- ..++||+-..|+++ +.+.|. +|+||+|.|.+-+|. + . .+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 688888642 33566666779884 667774 588999998655543 2 1 1333 488
Q ss_pred cEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEEeCceec
Q 017716 155 HVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVSRCHFS 215 (367)
Q Consensus 155 NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~VTIS~n~f~ 215 (367)
+++.|||+|+...+. ..-|+.++-.+...-+.+|.|.-..| |.+|+.-+.-.+-+++|.|.
T Consensus 278 ~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avFq~C~I~ 356 (502)
T PLN02916 278 GFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDFIFGDAAVVFQNCDIF 356 (502)
T ss_pred CEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccceeccCceEEEecCEEE
Confidence 999999999976432 22444443357889999999975544 44555555555566666654
No 63
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.84 E-value=0.028 Score=50.94 Aligned_cols=104 Identities=24% Similarity=0.396 Sum_probs=57.8
Q ss_pred CcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCCCCCCceE-------------------ecCCCceEEEEceeee
Q 017716 131 YKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQ-------------------IKPKSKHIWIDRCSLR 191 (367)
Q Consensus 131 nkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~-------------------i~~~s~nVWIDHcsfs 191 (367)
+++|.|.+....=...++.+..+.++.|+|++++... .++|. ++.++.+++++.|.+.
T Consensus 98 nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
T PF12708_consen 98 NLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIFN 174 (225)
T ss_dssp EEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEEE
T ss_pred eeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcccc
Confidence 5777775322100134677777999999999999753 12222 2211222333455555
Q ss_pred cCCCCceEeecCCceEEEeCceecC-CCceeEecCCCCCCCCcceeEEEecceecCCC
Q 017716 192 DYDDGLIDITRESTDITVSRCHFSS-HDKTMLIGADPSHVADRCIRVTIHHCFFDGTR 248 (367)
Q Consensus 192 ~~~Dglidi~~~s~~VTIS~n~f~~-H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~ 248 (367)
.+.+| + ..+.++++|++|.|.. ...++.+-... .+++.+|.|.+|.
T Consensus 175 ~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 175 GGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD 221 (225)
T ss_dssp SSSCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred CCCce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence 56666 2 2234688888888875 44554443221 4666777776664
No 64
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.72 E-value=0.22 Score=49.47 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=75.4
Q ss_pred CcceeeeccceEEeC--CcEEE-eeeccEEEeeeEEeCCCC----CCCCce-EecCCCceEEEEceeeecCCCCceEeec
Q 017716 131 YKTIDGRGQRVKLTG--KGLRL-KECEHVIICNLEFEGGKG----PDVDAI-QIKPKSKHIWIDRCSLRDYDDGLIDITR 202 (367)
Q Consensus 131 nkTI~G~G~gi~I~G--~gi~i-~~a~NVIIRnL~i~~g~~----~d~DaI-~i~~~s~nVWIDHcsfs~~~Dglidi~~ 202 (367)
|+||.+.++ ... ..|.| ..+.||-|.|.+|..+.. ...||+ .|..++..|=|-.|.|-+..-.+|--..
T Consensus 131 Nltf~~~~~---~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~s 207 (345)
T COG3866 131 NLTFEGFYQ---GDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSS 207 (345)
T ss_pred eeEEEeecc---CCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccC
Confidence 566666531 111 34666 578999999999998542 245554 5665788888888888765444332222
Q ss_pred -------CCceEEEeCceecCCCc---eeEecCCCCCCCCcceeEEEecceecCCCCCCCccccC---eeEEEcceEECc
Q 017716 203 -------ESTDITVSRCHFSSHDK---TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYA---KVHLYNNYTRNW 269 (367)
Q Consensus 203 -------~s~~VTIS~n~f~~H~k---~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G---~~Hv~NN~~~n~ 269 (367)
+.-.||+.+|+|.+-.. -+-+| .|-+-+|+|.....=.=-++.| ++++.||||.+.
T Consensus 208 D~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG-----------~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~ 276 (345)
T COG3866 208 DSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG-----------MVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENG 276 (345)
T ss_pred CcccccCCceeEEEeccccccccccCCceEee-----------EEEEeccccccCcccceEEeeccceEEEEecceeccC
Confidence 22359999999985321 11111 3444568888322211122334 689999999984
No 65
>PLN02671 pectinesterase
Probab=95.57 E-value=0.2 Score=50.94 Aligned_cols=111 Identities=13% Similarity=0.230 Sum_probs=70.2
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeecc---ceEEeC-----------C--------cEE
Q 017716 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTG-----------K--------GLR 149 (367)
Q Consensus 99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~---gi~I~G-----------~--------gi~ 149 (367)
|+++||++- ..+++|+-..|+. .+.|.| .+++||+|.|. ...|.. . .+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 688888652 2345555567888 466777 36889999863 334441 0 123
Q ss_pred EeeeccEEEeeeEEeCCCC-----CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716 150 LKECEHVIICNLEFEGGKG-----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (367)
Q Consensus 150 i~~a~NVIIRnL~i~~g~~-----~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~ 215 (367)
+ .+++++.+||+|+.... ...-|+.+.-.+.++-+.+|.|.-..|=|++- ...--+.+|+|.
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~CyIe 217 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQCYIQ 217 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEecEEE
Confidence 3 47999999999997621 11234433324788999999998887777653 223344566655
No 66
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.56 E-value=0.18 Score=46.88 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=76.7
Q ss_pred Ccceeee---------ccceEEeCCcEEEeeeccEEEeeeEEeCCCC----CCCC-ceEecCCCceEEEEceeeecCCCC
Q 017716 131 YKTIDGR---------GQRVKLTGKGLRLKECEHVIICNLEFEGGKG----PDVD-AIQIKPKSKHIWIDRCSLRDYDDG 196 (367)
Q Consensus 131 nkTI~G~---------G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~----~d~D-aI~i~~~s~nVWIDHcsfs~~~Dg 196 (367)
|++|.+. +....-.+..|.|.+++||+|-+.+|..+.. ...| .|.+..++++|=|-+|-|......
T Consensus 52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~ 131 (200)
T PF00544_consen 52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT 131 (200)
T ss_dssp S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence 6777763 2232334567999999999999999998721 1134 456655789999999999764322
Q ss_pred ceE------eecCCceEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceE
Q 017716 197 LID------ITRESTDITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYT 266 (367)
Q Consensus 197 lid------i~~~s~~VTIS~n~f~~H~k-~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~ 266 (367)
++. .......||+-.|+|.+... .=++ |.-.+-+-+|+|.+.....=.++. +++-+.||||
T Consensus 132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~---------r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV---------RFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE---------CSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred cccCCCCCccccCCceEEEEeEEECchhhCCCcc---------cccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 221 11223689999999974321 1121 112678888999877777655654 4789999987
No 67
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=95.55 E-value=0.19 Score=52.05 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=65.3
Q ss_pred hHHHhhhcC-----CCeEEEEEeceEEEecceeEe---ccCcceeeecc---ceEEeCC---------------------
Q 017716 99 SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTGK--------------------- 146 (367)
Q Consensus 99 SLr~Ai~~~-----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~---gi~I~G~--------------------- 146 (367)
|+++||++. ..+++|+-..|+.+ +.|.| .+++||.|.|. +..|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 788899742 23556665679884 56777 37899999763 2344321
Q ss_pred ------------------c--------EEEeeeccEEEeeeEEeCCCCC-----CCCceEecCCCceEEEEceeeecCCC
Q 017716 147 ------------------G--------LRLKECEHVIICNLEFEGGKGP-----DVDAIQIKPKSKHIWIDRCSLRDYDD 195 (367)
Q Consensus 147 ------------------g--------i~i~~a~NVIIRnL~i~~g~~~-----d~DaI~i~~~s~nVWIDHcsfs~~~D 195 (367)
. +.+ .+++++.+||+|+...+. ..-|+-+.-.+..+.+.+|.|.-..|
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD 252 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD 252 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc
Confidence 0 222 479999999999976431 12344443357889999999988777
Q ss_pred CceE
Q 017716 196 GLID 199 (367)
Q Consensus 196 glid 199 (367)
=|+.
T Consensus 253 TLy~ 256 (422)
T PRK10531 253 TFFV 256 (422)
T ss_pred eeee
Confidence 7765
No 68
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.50 E-value=0.86 Score=46.05 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=65.6
Q ss_pred eeEeccCcceeeeccceEEeCC--cEEEeeeccEEEeeeEEeCCCC----CCCCceEecCCCceEEEEceeeecCCCCce
Q 017716 125 HLSVSSYKTIDGRGQRVKLTGK--GLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (367)
Q Consensus 125 ~l~V~snkTI~G~G~gi~I~G~--gi~i~~a~NVIIRnL~i~~g~~----~d~DaI~i~~~s~nVWIDHcsfs~~~Dgli 198 (367)
.|.|....|.++.- ...|.|. ||.+.++.++.|+.-+|.+-.. ..++||.+. ++..+-|--+.++...|+.+
T Consensus 99 gI~v~~~at~A~Vr-~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy 176 (408)
T COG3420 99 GIFVGRTATGAVVR-HNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY 176 (408)
T ss_pred eEEeccCcccceEE-cccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence 46666666666652 2234443 5788889999999999987542 348999998 88899999999999999954
Q ss_pred EeecCCceEEEeCceecCC
Q 017716 199 DITRESTDITVSRCHFSSH 217 (367)
Q Consensus 199 di~~~s~~VTIS~n~f~~H 217 (367)
+ .-|..-+|+.|.|++-
T Consensus 177 -~-~~S~~~~~~gnr~~~~ 193 (408)
T COG3420 177 -S-DTSQHNVFKGNRFRDL 193 (408)
T ss_pred -E-cccccceecccchhhe
Confidence 3 3467777888887753
No 69
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=94.39 E-value=0.72 Score=42.85 Aligned_cols=88 Identities=22% Similarity=0.175 Sum_probs=57.2
Q ss_pred ceEEEeCceecCCCc--eeEecCCCCCCCCcceeEEEecceecCCCCCCCcc--ccC-------eeEEEcceEECcccce
Q 017716 205 TDITVSRCHFSSHDK--TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV--RYA-------KVHLYNNYTRNWGIYA 273 (367)
Q Consensus 205 ~~VTIS~n~f~~H~k--~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~--r~G-------~~Hv~NN~~~n~~~ya 273 (367)
++|-|=+|.|.+-.- .-|+|...+...+....|-+|||.|-.+.. +|.. ..| ..-+.||+|+..-..|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGt-n~~~~wvGGIv~sGF~ntlIENNVfDG~y~aa 80 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGT-NPNIDWVGGIVTSGFYNTLIENNVFDGVYHAA 80 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCc-CCCCceeeeEEeccccccEEEeeeecccccce
Confidence 578888888886443 346787655555555689999999976532 3443 333 2479999998754444
Q ss_pred ee----------ecCCceEEEEceeEecCC
Q 017716 274 VC----------ASVDSQIYSQCNIYEAGQ 293 (367)
Q Consensus 274 i~----------~~~~a~i~~e~N~F~~g~ 293 (367)
+. .+.+=...+.+|.+.+..
T Consensus 81 i~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 81 IAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred EEEEecccccCCCCCceEEEEEcceEeeee
Confidence 42 123345667888888764
No 70
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=92.90 E-value=0.48 Score=50.59 Aligned_cols=135 Identities=20% Similarity=0.324 Sum_probs=86.5
Q ss_pred CCCeEEEEEeceEEEecc------e---e-Ee-ccCcceeeeccceEE----eCCcEEEeeeccEEEeeeEEeCCCCCCC
Q 017716 107 KEPLWIVFEVSGTIHLRS------H---L-SV-SSYKTIDGRGQRVKL----TGKGLRLKECEHVIICNLEFEGGKGPDV 171 (367)
Q Consensus 107 ~~P~~IVf~vsGtI~l~~------~---l-~V-~snkTI~G~G~gi~I----~G~gi~i~~a~NVIIRnL~i~~g~~~d~ 171 (367)
..|+.|.|.--..+.+.. + + .+ .+|+||.+. .+.. .-.||.+..++||.|.+.+|..+ +
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl--~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg----D 309 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL--TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG----D 309 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce--EEECCCCCCCCccccccceeEEEeccEEecC----C
Confidence 467777765444443322 1 1 11 256666654 1111 22378999999999999999975 3
Q ss_pred CceEecC-----------CCceEEEEceeeecCCCCceEeec---CCceEEEeCceecCCCceeEecCCCCCCCCcceeE
Q 017716 172 DAIQIKP-----------KSKHIWIDRCSLRDYDDGLIDITR---ESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRV 237 (367)
Q Consensus 172 DaI~i~~-----------~s~nVWIDHcsfs~~~Dglidi~~---~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~V 237 (367)
|+|.+.. -+++|||-||-|+.++-+++.-.+ +-.+|++.+|.|.+-+.+.-|...+... ...-+|
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI 388 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNI 388 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEE
Confidence 5555541 257899999999988777655332 4579999999999877766665443221 112377
Q ss_pred EEecceecCCC
Q 017716 238 TIHHCFFDGTR 248 (367)
Q Consensus 238 T~hhN~f~~~~ 248 (367)
+|+.+...+..
T Consensus 389 ~~~~~~~~nv~ 399 (542)
T COG5434 389 VFEDNKMRNVK 399 (542)
T ss_pred EEecccccCcc
Confidence 87777666654
No 71
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.96 E-value=0.53 Score=48.81 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=15.6
Q ss_pred EEEecceecCCCCC--CCcccc-CeeE-EEcceEECcc
Q 017716 237 VTIHHCFFDGTRQR--HPRVRY-AKVH-LYNNYTRNWG 270 (367)
Q Consensus 237 VT~hhN~f~~~~~R--~Pr~r~-G~~H-v~NN~~~n~~ 270 (367)
-++..|+|-+...+ ..-+|. |.-| |+|||+++..
T Consensus 247 n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~ 284 (425)
T PF14592_consen 247 NTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLT 284 (425)
T ss_dssp -EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESS
T ss_pred ceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccc
Confidence 45566677555433 455553 4443 6777777653
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=83.30 E-value=16 Score=36.99 Aligned_cols=146 Identities=11% Similarity=0.140 Sum_probs=88.8
Q ss_pred hhHHHhhhc-----CCCeEEEEEeceEEEecceeEec-cC--cceeeeccc--eEEe-----C---C--cE---------
Q 017716 98 GSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS-SY--KTIDGRGQR--VKLT-----G---K--GL--------- 148 (367)
Q Consensus 98 GSLr~Ai~~-----~~P~~IVf~vsGtI~l~~~l~V~-sn--kTI~G~G~g--i~I~-----G---~--gi--------- 148 (367)
-|.++||++ ...|.+|+-..|.+ ++.|.|. ++ +|+.|.+.. -+.+ + . +.
T Consensus 95 ~TIQaAvdaA~~~~~~kr~yI~vk~GvY--~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss~ 172 (405)
T COG4677 95 TTIQAAVDAAIIKRTNKRQYIAVKAGVY--QETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSSR 172 (405)
T ss_pred HHHHHHHhhhcccCCCceEEEEEcccee--ceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccch
Confidence 467777764 23566677677887 4567775 44 899998644 1221 1 1 11
Q ss_pred -----------EEeeeccEEEeeeEEeCCCC--CCC---CceEecCCCceEEEEceeeecCCCCceEeecCCc-------
Q 017716 149 -----------RLKECEHVIICNLEFEGGKG--PDV---DAIQIKPKSKHIWIDRCSLRDYDDGLIDITREST------- 205 (367)
Q Consensus 149 -----------~i~~a~NVIIRnL~i~~g~~--~d~---DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~------- 205 (367)
.+...++.+++||+|+...+ ... -++-+...+..+.+..|.+--..|-|+.-..+..
T Consensus 173 ~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~ 252 (405)
T COG4677 173 SATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNR 252 (405)
T ss_pred hhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCc
Confidence 11235789999999986432 111 3555555678899999999888887765543211
Q ss_pred --eEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccc
Q 017716 206 --DITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR 255 (367)
Q Consensus 206 --~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (367)
.--+.+|+|+.| --+++|+. .+-||.|-|.-+..|.+-..
T Consensus 253 ~~R~yftNsyI~Gd-vDfIfGsg---------taVFd~c~i~~~d~r~~~~g 294 (405)
T COG4677 253 QPRTYFTNSYIEGD-VDFIFGSG---------TAVFDNCEIQVVDSRTQQEG 294 (405)
T ss_pred chhhheecceeccc-ceEEeccc---------eEEeccceEEEeccCCCcce
Confidence 123456666643 23455654 45667777777777875443
No 73
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=82.68 E-value=7.4 Score=38.19 Aligned_cols=64 Identities=17% Similarity=0.354 Sum_probs=48.2
Q ss_pred eeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 017716 152 ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (367)
Q Consensus 152 ~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd 227 (367)
+++|..|.|.+|..|.. + +. .++||-+++|.|.|-+= +.+ ++++.|.+|+|..-.++.||.+.+
T Consensus 17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP----~Wh-~~~~~i~~~~f~~~aRa~iWYs~~ 80 (277)
T PF12541_consen 17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYP----LWH-SDNIKIENCYFTEMARAAIWYSNN 80 (277)
T ss_pred ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECc----eEE-ECCeEEEeeEEeecceeeeeEeCC
Confidence 57899999999997643 2 44 68899999999987331 212 467888899998888888887664
No 74
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=76.45 E-value=9.9 Score=40.41 Aligned_cols=69 Identities=25% Similarity=0.458 Sum_probs=44.7
Q ss_pred CcEEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceE
Q 017716 146 KGLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDI 207 (367)
Q Consensus 146 ~gi~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~V 207 (367)
..+.+. +++++.|||+|+...+. ..-|+.++-.+.++-+.+|.|.-..| |.+|+.-+.-..
T Consensus 263 aT~~v~-~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFIFG~a~a 341 (497)
T PLN02698 263 ATFTIT-GDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAA 341 (497)
T ss_pred eeEEEE-CCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceEecccce
Confidence 345564 78999999999976432 22344444357889999999975444 445555555555
Q ss_pred EEeCceec
Q 017716 208 TVSRCHFS 215 (367)
Q Consensus 208 TIS~n~f~ 215 (367)
-+++|.|.
T Consensus 342 vf~~C~i~ 349 (497)
T PLN02698 342 VFQNCYLF 349 (497)
T ss_pred eecccEEE
Confidence 66666664
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=72.01 E-value=6.3 Score=27.20 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=20.9
Q ss_pred ceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716 173 AIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (367)
Q Consensus 173 aI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~ 215 (367)
||.+. .+++..|..|.++...|| |.+. .+.+-+|..|.|.
T Consensus 1 GI~l~-~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLE-SSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred CEEEE-ecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 34554 444555666666666664 4442 3445555555554
No 76
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=68.28 E-value=29 Score=34.18 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=19.5
Q ss_pred eEEEecceecCCCCCCCccccCeeEEEcceEEC
Q 017716 236 RVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268 (367)
Q Consensus 236 ~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n 268 (367)
++|+-+|...+. .|++=.-.+.+.|+-+.+
T Consensus 195 NltliNC~I~g~---QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 195 NLTLINCTIEGT---QPLCYCDNLVLENCTMID 224 (277)
T ss_pred CeEEEEeEEecc---CccEeecceEEeCcEeec
Confidence 678877766554 456554556777776664
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=60.00 E-value=64 Score=30.76 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=38.2
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC-CCceeEe
Q 017716 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-HDKTMLI 223 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~-H~k~~Li 223 (367)
|.|. +-..|+|+.|-.. ..|||.+. + ...|+.+-+.+..+..+.++..+..++|..+-+.+ .+|++-+
T Consensus 57 F~le--~GatlkNvIiG~~---~~dGIHC~-G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~ 125 (215)
T PF03211_consen 57 FILE--DGATLKNVIIGAN---QADGIHCK-G--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH 125 (215)
T ss_dssp EEEE--TTEEEEEEEETSS----TT-EEEE-S--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE
T ss_pred EEec--CCCEEEEEEEcCC---CcCceEEc-C--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEe
Confidence 5554 3345566555322 34778776 3 46667776777666667776555477777775543 4555443
No 78
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=54.82 E-value=81 Score=32.62 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=53.4
Q ss_pred CCceEEEeCceecCCC--ceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECcccceeeecCCc
Q 017716 203 ESTDITVSRCHFSSHD--KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280 (367)
Q Consensus 203 ~s~~VTIS~n~f~~H~--k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai~~~~~a 280 (367)
+-..||+.++.|..-+ ++.++=.. -+++||.+.|-+...=.=..+ +...|....|+.-- -++......
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~--------t~~~~hgC~F~gf~g~cl~~~-~~~~VrGC~F~~C~-~gi~~~~~~ 188 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHAN--------TNTLFHGCSFFGFHGTCLESW-AGGEVRGCTFYGCW-KGIVSRGKS 188 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEec--------ceEEEEeeEEecCcceeEEEc-CCcEEeeeEEEEEE-EEeecCCcc
Confidence 3468999999998544 23333211 278999999987665544444 66778888776531 366666677
Q ss_pred eEEEEceeEecC
Q 017716 281 QIYSQCNIYEAG 292 (367)
Q Consensus 281 ~i~~e~N~F~~g 292 (367)
++.+..++|+.=
T Consensus 189 ~lsVk~C~FekC 200 (386)
T PF01696_consen 189 KLSVKKCVFEKC 200 (386)
T ss_pred eEEeeheeeehe
Confidence 888888888753
No 79
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=54.71 E-value=66 Score=31.21 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=74.6
Q ss_pred ccCcceeeeccceEE------eCCcEEEeeeccEEEeeeEEeCCCCCCCCceEec-----CCCceEEEEceeeecCCCCc
Q 017716 129 SSYKTIDGRGQRVKL------TGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIK-----PKSKHIWIDRCSLRDYDDGL 197 (367)
Q Consensus 129 ~snkTI~G~G~gi~I------~G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~-----~~s~nVWIDHcsfs~~~Dgl 197 (367)
.++.+|.|. +| .|.+|.|..+ +..|+|-+|.+.. .+||.+. ....++.|.-+++.....|
T Consensus 96 ~~~~~i~Gv----tItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G- 166 (246)
T PF07602_consen 96 ANNATISGV----TITNPNIARGTGIWIESS-SPTIANNTFTNNG---REGIFVTGTSANPGINGNVISGNSIYFNKTG- 166 (246)
T ss_pred cCCCEEEEE----EEEcCCCCcceEEEEecC-CcEEEeeEEECCc---cccEEEEeeecCCcccceEeecceEEecCcC-
Confidence 455566654 33 3446888754 9999999999854 3567554 1334566777788776666
Q ss_pred eEeecC--CceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccC-eeEEEcceEECccccee
Q 017716 198 IDITRE--STDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYA-KVHLYNNYTRNWGIYAV 274 (367)
Q Consensus 198 idi~~~--s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G-~~Hv~NN~~~n~~~yai 274 (367)
|++... +....|.+|+|++...++.+-. .. |-+..+ ...+-||.+.+.+.|.+
T Consensus 167 i~i~~~~~~~~n~I~NN~I~~N~~Gi~~~~-----------------------~~-pDlG~~s~~~~g~N~~~~N~~~Dl 222 (246)
T PF07602_consen 167 ISISDNAAPVENKIENNIIENNNIGIVAIG-----------------------DA-PDLGTGSEGSPGNNIFRNNGRYDL 222 (246)
T ss_pred eEEEcccCCccceeeccEEEeCCcCeEeec-----------------------cC-CccccCCCCCCCCcEEecCcceee
Confidence 444322 2224778888886555443211 11 333221 22344677776666666
Q ss_pred eec--CCceEEEEceeEe
Q 017716 275 CAS--VDSQIYSQCNIYE 290 (367)
Q Consensus 275 ~~~--~~a~i~~e~N~F~ 290 (367)
... ..-++++.+|-..
T Consensus 223 ~~~~~~~~~l~a~gN~ld 240 (246)
T PF07602_consen 223 NNSATPGQTLYAVGNQLD 240 (246)
T ss_pred EeccCCceeEEEeCCccC
Confidence 552 2246777777664
No 80
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=54.52 E-value=74 Score=29.86 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=44.4
Q ss_pred CCceEEEEceeeecC-CCCceEee-----cCCceEEEeCceecCCCceeEec--CCCCCC-CCcceeEEEecceecCCCC
Q 017716 179 KSKHIWIDRCSLRDY-DDGLIDIT-----RESTDITVSRCHFSSHDKTMLIG--ADPSHV-ADRCIRVTIHHCFFDGTRQ 249 (367)
Q Consensus 179 ~s~nVWIDHcsfs~~-~Dglidi~-----~~s~~VTIS~n~f~~H~k~~LiG--~sd~~~-~d~~~~VT~hhN~f~~~~~ 249 (367)
.+++|+|.|+.|... ....++.. .+-.+.-|.+|.|+.-..+.+.- -..... ...+...++.+|.+.++.+
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 457999999999763 22222221 24457789999999765544332 111111 1223466778899999998
Q ss_pred CC
Q 017716 250 RH 251 (367)
Q Consensus 250 R~ 251 (367)
|.
T Consensus 112 r~ 113 (198)
T PF08480_consen 112 RK 113 (198)
T ss_pred cc
Confidence 74
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=47.48 E-value=41 Score=23.02 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=30.0
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec
Q 017716 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD 192 (367)
Q Consensus 147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~ 192 (367)
||.+..+++..|++=+|... .|||.+. .+++--|..|.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----~~GI~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----SYGIYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----CCEEEEE-eCCCCEeECCEEEc
Confidence 46777777777887787764 3699987 66677777777765
No 82
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=43.18 E-value=24 Score=39.56 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=11.4
Q ss_pred eeEEEecceecCCCCCCCcc
Q 017716 235 IRVTIHHCFFDGTRQRHPRV 254 (367)
Q Consensus 235 ~~VT~hhN~f~~~~~R~Pr~ 254 (367)
.+.|+-|=+-.-|...-|++
T Consensus 859 qk~TLLHfLae~~e~kypd~ 878 (1102)
T KOG1924|consen 859 QKTTLLHFLAEICEEKYPDI 878 (1102)
T ss_pred hhhHHHHHHHHHHHHhChhh
Confidence 35566555555555555655
No 83
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=40.43 E-value=1.6e+02 Score=32.05 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=43.7
Q ss_pred cEEEeeec----cEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC-C-Cce
Q 017716 147 GLRLKECE----HVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-H-DKT 220 (367)
Q Consensus 147 gi~i~~a~----NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~-H-~k~ 220 (367)
.+.|.+-+ +..|+|+++-+.+-...|||.+. ..+. |++|-|.-..|. |-+.+ ++++|++|-+-. | .-.
T Consensus 345 Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly-~nS~--i~dcF~h~nDD~-iKlYh--S~v~v~~~ViWk~~Ngpi 418 (582)
T PF03718_consen 345 SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY-PNST--IRDCFIHVNDDA-IKLYH--SNVSVSNTVIWKNENGPI 418 (582)
T ss_dssp SEEEESSSGGGEEEEEEEEEEE---CTT----B---TT-E--EEEEEEEESS-S-EE--S--TTEEEEEEEEEE-SSS-S
T ss_pred eEEecCCccccccceeeceeeeeeEEeccCCcccc-CCCe--eeeeEEEecCch-hheee--cCcceeeeEEEecCCCCe
Confidence 46666444 47899999998887778999997 3333 467766655565 54533 789999998863 2 223
Q ss_pred eEecCCCCCCCC-cceeEEEeccee
Q 017716 221 MLIGADPSHVAD-RCIRVTIHHCFF 244 (367)
Q Consensus 221 ~LiG~sd~~~~d-~~~~VT~hhN~f 244 (367)
+-||.....+.+ .--++.+-|+.+
T Consensus 419 iq~GW~pr~isnv~veni~IIh~r~ 443 (582)
T PF03718_consen 419 IQWGWTPRNISNVSVENIDIIHNRW 443 (582)
T ss_dssp EE--CS---EEEEEEEEEEEEE---
T ss_pred EEeeccccccCceEEeeeEEEeeee
Confidence 556765432221 012667766633
No 84
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=36.91 E-value=1.4e+02 Score=26.15 Aligned_cols=59 Identities=25% Similarity=0.243 Sum_probs=41.1
Q ss_pred eccEEEeeeEEeCCCC------------CCCCceEecCCCceEEEEceeeec---CCCCceEeecCCceE-EEeCc
Q 017716 153 CEHVIICNLEFEGGKG------------PDVDAIQIKPKSKHIWIDRCSLRD---YDDGLIDITRESTDI-TVSRC 212 (367)
Q Consensus 153 a~NVIIRnL~i~~g~~------------~d~DaI~i~~~s~nVWIDHcsfs~---~~Dglidi~~~s~~V-TIS~n 212 (367)
..++-|||..++.|+- .+.|++.|. .....+|--|.-++ +..|.||+..+...| ||.|.
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~-~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyWd 88 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIP-PGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYWD 88 (131)
T ss_pred CccEEEEccEeccCccccCCCcCCEeCccccCceEec-CCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEEe
Confidence 3478888888887641 235677776 45667888887755 578899998665556 66665
No 85
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=26.44 E-value=93 Score=17.64 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=6.8
Q ss_pred eEEEEceeeecCCC
Q 017716 182 HIWIDRCSLRDYDD 195 (367)
Q Consensus 182 nVWIDHcsfs~~~D 195 (367)
+++|.+|.|.....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 34555555554443
No 86
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=23.46 E-value=59 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=13.7
Q ss_pred CceEecCCCceEEEEceee
Q 017716 172 DAIQIKPKSKHIWIDRCSL 190 (367)
Q Consensus 172 DaI~i~~~s~nVWIDHcsf 190 (367)
+.|.+.-.+.-|||+||+=
T Consensus 14 ~~i~VtY~G~pV~Ie~vde 32 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 4555544678999999973
No 87
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=22.24 E-value=77 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCceEEecCCCCCCChhHHHhhhcCCCeEEE
Q 017716 83 HGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113 (367)
Q Consensus 83 gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IV 113 (367)
.|..++||+-.| ||.|+..++++-+.
T Consensus 52 dGDlVTIts~~d-----L~~A~~~~~~~~l~ 77 (81)
T cd06401 52 DGDLITIFDSSD-----LSFAIQCSRILKLT 77 (81)
T ss_pred CCCEEEeccHHH-----HHHHHhcCcceEEE
Confidence 478999999998 99999988876553
No 88
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=22.14 E-value=58 Score=38.37 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=7.6
Q ss_pred EEecCCCCC-CChhHHHhh
Q 017716 87 YHVTTLADD-GPGSLREGC 104 (367)
Q Consensus 87 ~~VT~l~d~-gpGSLr~Ai 104 (367)
-+|-++... -|.-||.-.
T Consensus 75 ~~v~t~ka~~PpeHLrki~ 93 (2365)
T COG5178 75 LHVLTLKAPIPPEHLRKIQ 93 (2365)
T ss_pred eeeeccCCCCCHHHHHhhh
Confidence 344444332 344455444
No 89
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=22.03 E-value=4.2e+02 Score=21.49 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=22.7
Q ss_pred EEEeeeccEEEeeeEEeC----CCC--CCCCceEecCCCceEEEEceeeecC
Q 017716 148 LRLKECEHVIICNLEFEG----GKG--PDVDAIQIKPKSKHIWIDRCSLRDY 193 (367)
Q Consensus 148 i~i~~a~NVIIRnL~i~~----g~~--~d~DaI~i~~~s~nVWIDHcsfs~~ 193 (367)
+.++ +++|.++.+.++. +.. ....++. . .+.+..|.+|.+...
T Consensus 40 ~~i~-~~~~~~~G~~~~~~~~~G~~~~~~~~~~~-~-~~~~~~i~~N~~~~~ 88 (146)
T smart00722 40 ITIN-SNDVRVDGITIGGSTVTGIYVSASGDGVI-Q-NTGKNLIIDNVTING 88 (146)
T ss_pred EEEe-CCCCEEECeEEEeEEeeCcccccCCceEe-c-CccccEEEcceecCC
Confidence 4444 5667777777775 211 1123333 2 455566666666554
No 90
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.74 E-value=59 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=15.6
Q ss_pred CCCCceEeecCCceEEEeCce
Q 017716 193 YDDGLIDITRESTDITVSRCH 213 (367)
Q Consensus 193 ~~Dglidi~~~s~~VTIS~n~ 213 (367)
|.|-+|-|+...+.|||++|.
T Consensus 361 C~~s~iqIkGKvNsItld~Ck 381 (480)
T KOG2675|consen 361 CSNSTIQIKGKVNSITLDNCK 381 (480)
T ss_pred ccceEEEEeceeeeEEecCCc
Confidence 455567787778888888884
No 91
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=20.68 E-value=73 Score=24.36 Aligned_cols=18 Identities=22% Similarity=0.732 Sum_probs=13.3
Q ss_pred CceEecCCCceEEEEcee
Q 017716 172 DAIQIKPKSKHIWIDRCS 189 (367)
Q Consensus 172 DaI~i~~~s~nVWIDHcs 189 (367)
+-|.+.-.+.-|||+|++
T Consensus 14 ~~i~V~Y~G~pV~Iq~vd 31 (59)
T PRK01625 14 SRIDVTYEGVPVWIESCD 31 (59)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 445554467899999997
Done!