BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017717
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 31/299 (10%)
Query: 25 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQ 84
L+ ++++L +L GQ S + L V++++ L+ +QSE E+E +F E LE K+
Sbjct: 66 LLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFL 125
Query: 85 KLYQPMYTKRYEIVNGVVEGAPNEVAMDQ--------------EEDKATEE------KGV 124
+ Y+P++ +R I++G + P ++A Q EE+KA + KG+
Sbjct: 126 QKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 185
Query: 125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKW-FRIDDPKGFKLEFYFDP--NPYFKN 181
P FWLTA++N ++ + IT+RD L++L+DI + D GFKL F FD NP+F N
Sbjct: 186 PSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTN 245
Query: 182 SVLTKTYHMIDE----DEPILEKAIGTEIEWYPGXXXXXX--XXXXXXXXXXXXXXPITK 235
+L KTY E + I + A G EI W I K
Sbjct: 246 DILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEK 305
Query: 236 TEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTG 294
ESFFNFF+PP++ + + DY IG ++DK+IP AV WFTG
Sbjct: 306 ITPIESFFNFFDPPKIQNEDQDEELEEDLEERLAL--DYSIGEQLKDKLIPRAVDWFTG 362
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
Length = 292
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 31/294 (10%)
Query: 33 LQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYT 92
L +L GQ S + L V++++ L+ +QSE E+E +F E LE K+ + Y+P++
Sbjct: 1 LGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWE 60
Query: 93 KRYEIVNGVVEGAPNEVAMDQ--------------EEDKATEE------KGVPDFWLTAM 132
+R I++G + P ++A Q EE+KA + KG+P FWLTA+
Sbjct: 61 QRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTAL 120
Query: 133 KNNDVLSEEITERDEGALKFLKDIKW-FRIDDPKGFKLEFYFDP--NPYFKNSVLTKTYH 189
+N ++ + IT+RD L++L+DI + D GFKL F FD NP+F N +L KTY
Sbjct: 121 ENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYF 180
Query: 190 MIDE----DEPILEKAIGTEIEWYPGXXXXXX--XXXXXXXXXXXXXXPITKTEECESFF 243
E + I + A G EI W I K ESFF
Sbjct: 181 YQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFF 240
Query: 244 NFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAI 297
NFF+PP++ + + DY IG ++DK+IP AV WFTG A+
Sbjct: 241 NFFDPPKIQNEDQDEELEEDLEERLAL--DYSIGEQLKDKLIPRAVDWFTGAAL 292
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
Length = 276
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 133/270 (49%), Gaps = 32/270 (11%)
Query: 45 EKLTPAVRKRVEVLREI---QSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 101
EK+T ++ E L+++ Q E+ + E+KF E L KY LY P+Y KR E + G
Sbjct: 8 EKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGN 67
Query: 102 VE---GAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKW 158
E G PN +P+FWL A++NN+ +S I + DE L +L DI+
Sbjct: 68 GEAKIGTPN----------------LPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRC 111
Query: 159 FRIDDPK----GFKLEFYFDPNPYFKNSVLTKTYHM--IDED-EPILEKAIGTEIEWYPG 211
I K GF L F+F PNP+F NSVLTKTYHM +D D EP+L T I+WY
Sbjct: 112 DYIKKNKEKKEGFILSFHFAPNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDN 171
Query: 212 XXXXXXXXXXXXXXXXXX-XXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQM 270
+ +T +SFF+FF +VP Q +M
Sbjct: 172 KNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEM 231
Query: 271 --EQDYDIGSTIRDKIIPHAVSWFTGEAIQ 298
E DY++ TI+++IIP+AV +F G I+
Sbjct: 232 IIEGDYEVALTIKERIIPYAVDYFLGIIIE 261
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly
Protein (Nap)
Length = 359
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 132/272 (48%), Gaps = 29/272 (10%)
Query: 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99
+ D + LT ++ ++ L+ Q E+ + E+KF E L KY LY P+Y KR E +
Sbjct: 40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALV 99
Query: 100 GVVE---GAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI 156
G E G PN +P+FWL A++NN+ +S I + DE L +L DI
Sbjct: 100 GNGEAKIGTPN----------------LPEFWLRALRNNNTVSHVIEDHDEEILVYLNDI 143
Query: 157 KWFRIDDPK----GFKLEFYFDPNPYFKNSVLTKTYHM--IDED-EPILEKAIGTEIEWY 209
+ I K GF L FYF NP+F NSVLTKTYHM +D D EP+L T I+WY
Sbjct: 144 RCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWY 203
Query: 210 PGXXXXXXXXXXXXXXXXXX-XXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQN 268
+ +T +SFF+FF +VP Q
Sbjct: 204 DNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQL 263
Query: 269 QM--EQDYDIGSTIRDKIIPHAVSWFTGEAIQ 298
+M E DY++ TI+++IIP+AV ++ G I+
Sbjct: 264 EMIIEGDYEVALTIKERIIPYAVDYYLGIIIE 295
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum
pdb|3GYW|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum At 2.4 A Resolution
Length = 249
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 127/261 (48%), Gaps = 29/261 (11%)
Query: 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVE--- 103
LT ++ ++ L+ Q E+ + E+KF E L KY LY P+Y KR E + G E
Sbjct: 3 LTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKI 62
Query: 104 GAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDD 163
G PN +P+FWL A++NN+ +S I + DE L +L DI+ I
Sbjct: 63 GTPN----------------LPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKK 106
Query: 164 PK----GFKLEFYFDPNPYFKNSVLTKTYHM--IDED-EPILEKAIGTEIEWYPGXXXXX 216
K GF L FYF NP+F NSVLTKTYHM +D D EP+L T I+WY
Sbjct: 107 NKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILK 166
Query: 217 XXXXXXXXXXXXX-XXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQM--EQD 273
+ +T +SFF+FF +VP Q +M E D
Sbjct: 167 KNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGD 226
Query: 274 YDIGSTIRDKIIPHAVSWFTG 294
Y++ TI+++IIP+AV ++ G
Sbjct: 227 YEVALTIKERIIPYAVDYYLG 247
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
Length = 225
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 32/212 (15%)
Query: 36 LAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRY 95
L H E ++ +E + E+Q+E D L + EE +E KY KL QP + KR
Sbjct: 13 LNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRS 72
Query: 96 EIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKD 155
E++ +P+FW+T N+ +S + E DE A+ +L
Sbjct: 73 ELI-----------------------AKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTR 109
Query: 156 IKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGXXX 214
++ +D K G++++FYFD NPYF+N VL+K +HM + +P + TEI+W G
Sbjct: 110 VEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDP---SSKSTEIKWKSGKDM 166
Query: 215 XXXXXXXXXXXXXXXXXPITKTEECESFFNFF 246
+ EE ESFF +F
Sbjct: 167 TKRSSQTQNKASRKR-----QHEEPESFFTWF 193
>pdb|4DEV|A Chain A, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|B Chain B, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|C Chain C, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|D Chain D, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|E Chain E, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|F Chain F, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|G Chain G, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|H Chain H, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus
Length = 408
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 36 LAGQHSDVL----EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 91
L G+HS L EK TP KRV + RE+Q+ +D+ + K + + ++Q + P+Y
Sbjct: 110 LPGEHSLCLFRSMEKTTP---KRVRLYRELQAMNDDPKVKLLFKGFKHDGEFQNV--PVY 164
Query: 92 TKRYEIV-NGVVEGAPNEVAMD 112
+++ E + + + G + A D
Sbjct: 165 SRKLEFIGDSITSGEGSYGAFD 186
>pdb|3U37|A Chain A, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|B Chain B, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|C Chain C, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|D Chain D, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|E Chain E, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|F Chain F, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|G Chain G, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|H Chain H, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus
Length = 408
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 36 LAGQHSDVL----EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 91
L G+HS L EK TP KRV + RE+Q+ +D+ + K + + ++Q + P+Y
Sbjct: 110 LPGEHSLCLFRSMEKTTP---KRVRLYRELQAMNDDPKVKLLFKGFKHDGEFQNV--PVY 164
Query: 92 TKRYEIV-NGVVEGAPNEVAMD 112
+++ E + + + G + A D
Sbjct: 165 SRKLEFIGDSITSGEGSYGAFD 186
>pdb|3RJR|A Chain A, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|B Chain B, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|C Chain C, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|D Chain D, Crystal Structure Of Pro-tgf Beta 1
Length = 363
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 150 LKFLKDIKWFRIDDPKGFKLEFYFDPNPYF 179
+ F KD+ W I +PKG+ F P PY
Sbjct: 273 IDFRKDLGWKWIHEPKGYHANFCLGPCPYI 302
>pdb|1KLD|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLD|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLC|A Chain A, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLC|B Chain B, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLA|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|1KLA|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|3KFD|A Chain A, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|B Chain B, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|C Chain C, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|D Chain D, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
Length = 112
Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 150 LKFLKDIKWFRIDDPKGFKLEFYFDPNPY 178
+ F KD+ W I +PKG+ F P PY
Sbjct: 22 IDFRKDLGWKWIHEPKGYHANFCLGPCPY 50
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 33/155 (21%)
Query: 29 LKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEH---DELEAKFFEERAALEAKYQK 85
LK L+NL G D ++ L R+ +EVL EI+ E DE+E E LE +K
Sbjct: 170 LKLSLRNLKGGLRDFVDSLR---RELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEK 226
Query: 86 LYQPMYTKRYEI-----VNGVVEGAPN---EVAMDQ--EEDKATEEKGVPDFWLTAMKNN 135
L + + I + V+ G PN +++ ED+A V D T
Sbjct: 227 LTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAI----VTDIPGTT---R 279
Query: 136 DVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLE 170
DV+SEEI R G L FRI D G + E
Sbjct: 280 DVISEEIVIR--GIL--------FRIVDTAGVRSE 304
>pdb|1KTZ|A Chain A, Crystal Structure Of The Human Tgf-Beta Type Ii Receptor
Extracellular Domain In Complex With Tgf-Beta3
pdb|1TGJ|A Chain A, Human Transforming Growth Factor-beta 3, Crystallized From
Dioxane
pdb|1TGK|A Chain A, Human Transforming Growth Factor Beta 3, Crystallized From
Peg 4000
pdb|2PJY|A Chain A, Structural Basis For Cooperative Assembly Of The Tgf-Beta
Signaling Complex
pdb|3EO1|C Chain C, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|F Chain F, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|I Chain I, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|L Chain L, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
Length = 112
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 150 LKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKT 187
+ F +D+ W + +PKG+ F P PY +++ T +
Sbjct: 22 IDFRQDLGWKWVHEPKGYYANFCSGPCPYLRSADTTHS 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,192,482
Number of Sequences: 62578
Number of extensions: 344215
Number of successful extensions: 690
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 15
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)