Query 017717
Match_columns 367
No_of_seqs 250 out of 706
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1507 Nucleosome assembly pr 100.0 1.1E-89 2.3E-94 663.3 20.3 295 1-299 1-342 (358)
2 PTZ00007 (NAP-L) nucleosome as 100.0 1.3E-73 2.8E-78 559.7 24.9 249 40-301 28-284 (337)
3 PF00956 NAP: Nucleosome assem 100.0 4E-60 8.8E-65 448.7 18.0 239 52-296 1-244 (244)
4 PTZ00008 (NAP-S) nucleosome as 100.0 9.8E-54 2.1E-58 389.8 15.3 180 67-300 2-184 (185)
5 KOG1508 DNA replication factor 99.9 2.1E-27 4.5E-32 227.3 10.0 208 43-303 22-230 (260)
6 PTZ00007 (NAP-L) nucleosome as 97.8 2E-05 4.3E-10 78.6 4.9 73 233-305 211-284 (337)
7 PF10446 DUF2457: Protein of u 95.7 0.0056 1.2E-07 62.7 2.0 6 295-300 48-53 (458)
8 KOG1507 Nucleosome assembly pr 95.4 0.0061 1.3E-07 60.7 1.2 92 203-300 241-339 (358)
9 PF06524 NOA36: NOA36 protein; 93.5 0.059 1.3E-06 52.0 3.0 6 203-208 187-192 (314)
10 PF11629 Mst1_SARAH: C termina 93.4 0.28 6.2E-06 35.7 5.6 36 58-93 10-45 (49)
11 PF04931 DNA_pol_phi: DNA poly 93.0 0.056 1.2E-06 59.8 2.4 27 46-72 334-360 (784)
12 PF04931 DNA_pol_phi: DNA poly 91.5 0.1 2.2E-06 57.8 2.2 6 282-287 610-615 (784)
13 PF03066 Nucleoplasmin: Nucleo 90.1 0.088 1.9E-06 46.9 0.0 23 170-192 17-41 (149)
14 KOG1189 Global transcriptional 86.2 1.9 4.1E-05 47.4 6.9 111 52-174 691-808 (960)
15 KOG0943 Predicted ubiquitin-pr 85.8 0.48 1E-05 54.2 2.3 17 76-92 1443-1459(3015)
16 PF03066 Nucleoplasmin: Nucleo 82.8 0.39 8.4E-06 42.9 0.0 6 187-192 17-22 (149)
17 KOG3064 RNA-binding nuclear pr 77.0 2.1 4.6E-05 41.5 2.9 54 46-99 71-128 (303)
18 KOG1832 HIV-1 Vpr-binding prot 76.3 1.3 2.9E-05 49.5 1.6 8 149-156 1219-1226(1516)
19 PF07352 Phage_Mu_Gam: Bacteri 76.3 12 0.00027 32.9 7.5 49 51-99 5-53 (149)
20 PF04147 Nop14: Nop14-like fam 75.8 2.3 5E-05 47.7 3.3 6 89-94 69-74 (840)
21 KOG0943 Predicted ubiquitin-pr 75.5 1.8 3.8E-05 49.9 2.2 11 294-304 1728-1738(3015)
22 KOG1832 HIV-1 Vpr-binding prot 71.2 2.3 4.9E-05 47.8 1.7 8 178-185 1245-1252(1516)
23 PF07195 FliD_C: Flagellar hoo 60.5 45 0.00098 31.5 8.2 62 22-86 169-230 (239)
24 PRK06798 fliD flagellar cappin 59.1 35 0.00077 35.6 7.8 74 5-84 330-414 (440)
25 PF07361 Cytochrom_B562: Cytoc 58.1 11 0.00024 31.4 3.1 42 47-88 51-103 (103)
26 COG4396 Mu-like prophage host- 57.3 33 0.00072 30.5 6.0 50 49-98 18-67 (170)
27 PF14389 Lzipper-MIP1: Leucine 55.4 42 0.00092 27.2 6.1 62 22-94 27-88 (88)
28 PTZ00415 transmission-blocking 54.2 6.9 0.00015 46.9 1.7 14 203-218 78-91 (2849)
29 KOG2038 CAATT-binding transcri 49.1 10 0.00022 42.2 1.9 10 173-182 692-701 (988)
30 KOG2038 CAATT-binding transcri 48.4 11 0.00024 41.9 2.0 9 239-247 802-811 (988)
31 PF07516 SecA_SW: SecA Wing an 48.0 63 0.0014 29.9 6.8 46 56-101 9-54 (214)
32 PF03344 Daxx: Daxx Family; I 46.8 6.5 0.00014 43.5 0.0 12 22-33 86-97 (713)
33 smart00502 BBC B-Box C-termina 43.5 95 0.0021 25.1 6.6 55 45-99 10-64 (127)
34 KOG4484 Uncharacterized conser 42.5 1.1E+02 0.0024 28.2 7.1 48 17-67 18-66 (199)
35 PTZ00415 transmission-blocking 42.2 16 0.00034 44.1 2.1 6 284-289 131-136 (2849)
36 PF12998 ING: Inhibitor of gro 42.1 50 0.0011 26.6 4.6 27 42-68 8-34 (105)
37 cd00179 SynN Syntaxin N-termin 40.9 1.9E+02 0.004 24.7 8.3 40 62-101 87-129 (151)
38 PF03344 Daxx: Daxx Family; I 40.5 9.2 0.0002 42.3 0.0 7 242-248 348-354 (713)
39 PF14197 Cep57_CLD_2: Centroso 40.5 95 0.0021 24.1 5.7 58 24-82 5-62 (69)
40 PRK08032 fliD flagellar cappin 40.4 83 0.0018 32.9 7.0 56 24-83 385-440 (462)
41 PF15290 Syntaphilin: Golgi-lo 40.2 72 0.0016 31.6 6.0 18 142-159 140-157 (305)
42 PF07106 TBPIP: Tat binding pr 39.4 1.3E+02 0.0028 26.8 7.2 68 28-98 97-168 (169)
43 KOG1189 Global transcriptional 38.4 24 0.00052 39.2 2.7 13 281-293 852-864 (960)
44 PF04889 Cwf_Cwc_15: Cwf15/Cwc 37.6 20 0.00044 34.5 1.8 6 184-189 26-31 (244)
45 PF03938 OmpH: Outer membrane 37.3 1.4E+02 0.0031 25.8 7.0 50 46-98 72-122 (158)
46 PF00611 FCH: Fes/CIP4, and EF 36.3 1.2E+02 0.0027 23.2 6.0 30 70-99 29-58 (91)
47 KOG1991 Nuclear transport rece 36.3 19 0.00042 40.9 1.6 18 20-37 495-512 (1010)
48 smart00055 FCH Fes/CIP4 homolo 36.0 1.7E+02 0.0036 22.6 6.6 24 70-93 29-52 (87)
49 KOG3647 Predicted coiled-coil 35.8 1.6E+02 0.0034 29.2 7.5 44 45-88 136-182 (338)
50 PF10417 1-cysPrx_C: C-termina 34.1 11 0.00024 26.1 -0.4 15 201-215 9-23 (40)
51 PRK08724 fliD flagellar cappin 33.6 1.7E+02 0.0036 32.5 8.1 71 8-88 571-652 (673)
52 KOG0574 STE20-like serine/thre 33.2 50 0.0011 33.5 3.8 37 57-93 455-491 (502)
53 PRK06664 fliD flagellar hook-a 32.4 1.5E+02 0.0033 32.7 7.7 27 58-84 609-635 (661)
54 PRK10780 periplasmic chaperone 30.3 2.1E+02 0.0046 25.4 7.1 18 81-98 112-129 (165)
55 PF00956 NAP: Nucleosome assem 30.1 76 0.0017 30.1 4.4 59 238-299 185-243 (244)
56 PF06464 DMAP_binding: DMAP1-b 29.0 88 0.0019 26.4 4.1 39 44-85 2-43 (111)
57 PRK15422 septal ring assembly 28.6 1.8E+02 0.0038 23.5 5.4 31 41-71 3-33 (79)
58 COG0497 RecN ATPase involved i 28.4 1.9E+02 0.0041 31.3 7.4 78 20-98 293-373 (557)
59 KOG3540 Beta amyloid precursor 27.6 45 0.00098 35.3 2.5 13 283-295 172-184 (615)
60 COG3074 Uncharacterized protei 27.0 3.2E+02 0.0069 21.6 6.8 32 41-72 3-34 (79)
61 PRK10869 recombination and rep 25.9 4.1E+02 0.009 28.5 9.5 22 167-188 410-431 (553)
62 PF05086 Dicty_REP: Dictyostel 25.8 32 0.0007 38.3 1.2 15 169-183 687-701 (911)
63 PF05600 DUF773: Protein of un 25.7 1.3E+02 0.0029 32.1 5.6 71 49-139 127-201 (507)
64 PRK01546 hypothetical protein; 25.5 99 0.0021 24.9 3.6 44 47-91 2-45 (79)
65 KOG0127 Nucleolar protein fibr 24.8 34 0.00075 36.7 1.1 10 285-294 186-195 (678)
66 KOG1991 Nuclear transport rece 24.8 40 0.00086 38.5 1.6 9 240-248 817-826 (1010)
67 PF14992 TMCO5: TMCO5 family 23.4 1.5E+02 0.0033 29.3 5.1 13 122-134 208-220 (280)
68 PRK02539 hypothetical protein; 22.8 1.3E+02 0.0028 24.6 3.8 44 47-91 1-44 (85)
69 KOG3241 Uncharacterized conser 22.4 68 0.0015 29.8 2.4 17 75-92 50-66 (227)
70 PF05086 Dicty_REP: Dictyostel 21.7 46 0.00099 37.2 1.3 12 178-189 733-744 (911)
71 KOG0127 Nucleolar protein fibr 21.5 58 0.0012 35.1 1.9 10 127-136 117-126 (678)
72 PF11705 RNA_pol_3_Rpc31: DNA- 21.5 65 0.0014 30.5 2.2 7 89-95 69-75 (233)
73 TIGR03042 PS_II_psbQ_bact phot 21.0 4.1E+02 0.0089 23.6 6.9 58 15-72 57-115 (142)
74 PF11705 RNA_pol_3_Rpc31: DNA- 21.0 53 0.0011 31.1 1.4 8 176-183 68-75 (233)
75 PF06005 DUF904: Protein of un 20.9 4.1E+02 0.009 20.7 6.4 45 43-87 5-52 (72)
76 PF15066 CAGE1: Cancer-associa 20.7 2.8E+02 0.0062 29.4 6.7 44 44-87 480-523 (527)
77 COG3883 Uncharacterized protei 20.6 3.6E+02 0.0077 26.5 7.0 22 123-144 114-135 (265)
78 COG1382 GimC Prefoldin, chaper 20.1 2.9E+02 0.0064 23.9 5.7 27 44-70 1-27 (119)
No 1
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-89 Score=663.29 Aligned_cols=295 Identities=55% Similarity=0.902 Sum_probs=263.3
Q ss_pred CCCCCCCCchhhhhHh------------------hC------cccchhHHHHHHHHhhhhcCCCchhhccCCHHHHHHHH
Q 017717 1 MSADKDNFNVTDLRAS------------------LD------EGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVE 56 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~~------------------~~------~~~~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~ 56 (367)
|||.+++++|+++.++ +. ...+|.++++++.|+++|+++.+++|++||++||+||.
T Consensus 1 msn~k~s~~~sd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~s~~v~~Lp~~Vk~Rv~ 80 (358)
T KOG1507|consen 1 MSNDKDSGNMSDAPTPHNTPSSASESPADAPSGSLDDESSSDEESTPKLLSALDGRLASLAGLLSDMVENLPPAVKNRVL 80 (358)
T ss_pred CCCccccccccccCCCCCCCcccccccccccccccccccccccccChhhhcccchhhhcccCCCchhhhhcCHHHHHHHH
Confidence 8999999999988765 22 12356699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhh------------hhhhhhccCC
Q 017717 57 VLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQE------------EDKATEEKGV 124 (367)
Q Consensus 57 aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~------------~~~~~~~kgI 124 (367)
|||+||.++..|+++|+++++.||+||+++|+|||+||++||+|.++|+.+++++... ......+|||
T Consensus 81 aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~~e~~~~~~~~d~KGI 160 (358)
T KOG1507|consen 81 ALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPKGI 160 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCcccccccccccccccccccchhhhccccccCC
Confidence 9999999999999999999999999999999999999999999999999877654211 1123467999
Q ss_pred CcchHHHHhcchhhhcccchhhHHhhccccccEEEEeCCC-CceEEEEEeCCCCCccCceEEEEEEec---CCCCc----
Q 017717 125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMI---DEDEP---- 196 (367)
Q Consensus 125 P~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~~~ed~-~gF~L~F~F~~NpYF~N~vLtK~y~~~---~~~~p---- 196 (367)
|+||||||+|+++|++||+++|++||+||+||++.+.+++ +||+|+|||+|||||+|+||||||+|+ +..+|
T Consensus 161 P~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~~P~~~~ 240 (358)
T KOG1507|consen 161 PDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDEDDPFAFD 240 (358)
T ss_pred chHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCcCCcccC
Confidence 9999999999999999999999999999999999999877 699999999999999999999999998 55556
Q ss_pred --ceecceeeeeeecCCCCCchhhhhcCCC-CCCCCCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhcc
Q 017717 197 --ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQD 273 (367)
Q Consensus 197 --~~~~~~gt~I~Wk~GknlT~k~~kKk~k-kg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D 273 (367)
.+.+|+||.|+|++|||||+++++|||| |+++++|+|+++++++||||||+||.+| +.++.|++.. +++|+.|
T Consensus 241 G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ip-d~~d~Ded~~---~~~L~~D 316 (358)
T KOG1507|consen 241 GPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIP-DEEDLDEDDL---EELLELD 316 (358)
T ss_pred CceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCC-cccccCchHH---HHHHHhh
Confidence 6889999999999999999998888764 7788999999999999999999999999 3333343322 7899999
Q ss_pred ccchhhhhhhcccchhhhhccccccc
Q 017717 274 YDIGSTIRDKIIPHAVSWFTGEAIQE 299 (367)
Q Consensus 274 ~eig~~I~d~IiP~AV~yftGea~~~ 299 (367)
|+||++||++|||+||.||||+|++.
T Consensus 317 yeIG~~lr~~IIPrAV~~fTGea~e~ 342 (358)
T KOG1507|consen 317 YEIGETLRDKIIPRAVLWFTGEALED 342 (358)
T ss_pred HHHHHHHHhhhhhheeeeeccccccc
Confidence 99999999999999999999999544
No 2
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=1.3e-73 Score=559.74 Aligned_cols=249 Identities=45% Similarity=0.762 Sum_probs=225.7
Q ss_pred CchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhhhhhhh
Q 017717 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKAT 119 (367)
Q Consensus 40 ~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~ 119 (367)
.+++|.+||+.||+||.+|+.||.++..|+.+|++++++|+++|+++|+|||++|++||+|..++. .
T Consensus 28 ~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e-------------~ 94 (337)
T PTZ00007 28 DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAE-------------I 94 (337)
T ss_pred ccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccc-------------c
Confidence 678999999999999999999999999999999999999999999999999999999999964321 2
Q ss_pred hccCCCcchHHHHhcchhhhcccchhhHHhhccccccEEEEeCCC--CceEEEEEeCCCCCccCceEEEEEEecC---CC
Q 017717 120 EEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP--KGFKLEFYFDPNPYFKNSVLTKTYHMID---ED 194 (367)
Q Consensus 120 ~~kgIP~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~~~ed~--~gF~L~F~F~~NpYF~N~vLtK~y~~~~---~~ 194 (367)
.++|||+||++||+||+.|+.+|+++|++||+||+||+|+++... .||+|+|+|.+||||+|++|||+|+|.. .+
T Consensus 95 ~~~gIP~FWl~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~ 174 (337)
T PTZ00007 95 GTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDD 174 (337)
T ss_pred ccCCcccHHHHHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCC
Confidence 347999999999999999999999999999999999999987643 6999999999999999999999999964 23
Q ss_pred CcceecceeeeeeecCCCCCchhhhhcCCC-CCCCCCCccccccccccccccccccCCCCCCC--CCChhHHHHHHHhhh
Q 017717 195 EPILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDE--DIDEDTAEELQNQME 271 (367)
Q Consensus 195 ~p~~~~~~gt~I~Wk~GknlT~k~~kKk~k-kg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~--d~Ded~~ee~~e~l~ 271 (367)
.|++.+++||+|+||+|||||+++++||+| |+++.+|+|+++++++|||+||+|+.+|..++ .++++..++++++|+
T Consensus 175 ~p~~~~~~~t~I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~ 254 (337)
T PTZ00007 175 EPLLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVE 254 (337)
T ss_pred CceeecceeeeceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHH
Confidence 577789999999999999999999988866 56778899999999999999999999987543 234456678999999
Q ss_pred ccccchhhhhhhcccchhhhhccccccccc
Q 017717 272 QDYDIGSTIRDKIIPHAVSWFTGEAIQEEE 301 (367)
Q Consensus 272 ~D~eig~~I~d~IiP~AV~yftGea~~~d~ 301 (367)
.||+||.+|++.|||+||.||||+++++++
T Consensus 255 ~DyeiG~~ikd~IIP~AV~yftGea~d~~~ 284 (337)
T PTZ00007 255 TDYEIGITIRDKLIPYAVYWFLGEAIDEDS 284 (337)
T ss_pred HhHHHHHHHHHhcccccHHhhCCCcccccc
Confidence 999999999999999999999999998765
No 3
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=4e-60 Score=448.67 Aligned_cols=239 Identities=49% Similarity=0.871 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhhhhhhhhccCCCcchHHH
Q 017717 52 RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTA 131 (367)
Q Consensus 52 ~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWlta 131 (367)
|+||.+|+.||.++..|+.+|.+++++|+++|+++++|||++|++||+|.++++. ...... .. ..++|||+||++|
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~--~~~~~~-~~-~~~~gIP~FW~~v 76 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTE--IEWEER-QE-EKPKGIPGFWLTV 76 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---H--HHH-------SSSTTSTTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccccc--ccccch-hh-ccccCCCCccccc
Confidence 6899999999999999999999999999999999999999999999999888764 111100 00 1268999999999
Q ss_pred HhcchhhhcccchhhHHhhccccccEEEEeCC-CCceEEEEEeCCCCCccCceEEEEEEecCCCC---cceecceeeeee
Q 017717 132 MKNNDVLSEEITERDEGALKFLKDIKWFRIDD-PKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDE---PILEKAIGTEIE 207 (367)
Q Consensus 132 l~N~~~l~~~I~e~De~iLk~L~DI~v~~~ed-~~gF~L~F~F~~NpYF~N~vLtK~y~~~~~~~---p~~~~~~gt~I~ 207 (367)
|+||+.++.+|+++|.+||+||+||+|++... +.||+|+|+|++||||+|++|||+|+|...++ |...++++|+|+
T Consensus 77 l~n~~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~~~~~~~~~~~~t~I~ 156 (244)
T PF00956_consen 77 LKNHPLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGDEEDPDELKSESTPID 156 (244)
T ss_dssp HHTSHHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSSTTTT-EEEEEE---E
T ss_pred cccCchhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCCCCCCCcceeeeeccc
Confidence 99999999999999999999999999999876 67999999999999999999999999987654 211589999999
Q ss_pred ecCCCCCchhhhhcCCC-CCCCCCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhccc
Q 017717 208 WYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIP 286 (367)
Q Consensus 208 Wk~GknlT~k~~kKk~k-kg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP 286 (367)
||+|||+|++++++|++ ++++.+|++++.++++|||+||+++.+|+++++ +++.++.++.+..||+||.+|++.|||
T Consensus 157 Wk~gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~--e~~~~~~~~~~~~d~ei~~~i~d~i~P 234 (244)
T PF00956_consen 157 WKPGKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDD--EEEDEDEEEEIEDDFEIGEIIKDDIIP 234 (244)
T ss_dssp BSTTTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTS--SSTCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccCCCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCccccc--ccchhhHHHHhhccHHHHHHHHhheec
Confidence 99999999999887654 566678999999999999999999988855443 223345567899999999999999999
Q ss_pred chhhhhcccc
Q 017717 287 HAVSWFTGEA 296 (367)
Q Consensus 287 ~AV~yftGea 296 (367)
+||.||||+|
T Consensus 235 ~av~yy~gea 244 (244)
T PF00956_consen 235 NAVKYYTGEA 244 (244)
T ss_dssp HHHHHHHTCT
T ss_pred hHHHHhCCCC
Confidence 9999999986
No 4
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=9.8e-54 Score=389.80 Aligned_cols=180 Identities=22% Similarity=0.425 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhhhhhhhhccCCCcchHHHHhcchhhhcccchhh
Q 017717 67 ELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERD 146 (367)
Q Consensus 67 ~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltal~N~~~l~~~I~e~D 146 (367)
+|+.+|.+++++|+++|+++++|||++|++|| +|||+||++||+||+.++ +|+++|
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II-----------------------~gIP~FW~~vl~n~~~~~-~I~~~D 57 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEII-----------------------EKIPGFWADTLRRHPALS-YLVPED 57 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH-----------------------hcCccHHHHHHHcCcccc-ccCHHH
Confidence 57889999999999999999999999999999 799999999999999999 999999
Q ss_pred HHhhccccccEEEE-eCCCCceEEEEEeCC--CCCccCceEEEEEEecCCCCcceecceeeeeeecCCCCCchhhhhcCC
Q 017717 147 EGALKFLKDIKWFR-IDDPKGFKLEFYFDP--NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKP 223 (367)
Q Consensus 147 e~iLk~L~DI~v~~-~ed~~gF~L~F~F~~--NpYF~N~vLtK~y~~~~~~~p~~~~~~gt~I~Wk~GknlT~k~~kKk~ 223 (367)
++||+||+||+|+. .+++.||+|+|+|++ ||||+|++|||+|++..+++. .+++|+|+||+|+|||+++++|+
T Consensus 58 ~~~L~~L~dI~ve~~~~~~~~f~i~F~F~~~~N~yF~n~~LtK~y~~~~~~~~---~~~~t~I~Wk~gkn~t~~~~kk~- 133 (185)
T PTZ00008 58 IDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKNNQEK---VVEVTKIKWKEGKSPIAAAEKAR- 133 (185)
T ss_pred HHHHHHhCceEEEEeecCCCCEEEEEEECCCCCCCcCCCEEEEEEEEecCCCc---eeeeeecccCCCCCcceeeeecc-
Confidence 99999999999997 456679999999975 899999999999999765543 46899999999999999876521
Q ss_pred CCCCCCCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhcccchhhhhcccccccc
Q 017717 224 KKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE 300 (367)
Q Consensus 224 kkg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d 300 (367)
+ ++++++++.|||+||+++..| .+++||+.|+++|||+||.||||+++.++
T Consensus 134 --~-----~~~~~~~~~SFF~fF~~~~~~-------------------~~~eIg~~i~e~i~P~av~yy~ge~~~~~ 184 (185)
T PTZ00008 134 --S-----DLDDECIVWSIFEWFTEEEWQ-------------------DRPDVGEIIRREIWHAPLLYYLDTVSIDD 184 (185)
T ss_pred --C-----ccccCCCCCChhhcCCCCccc-------------------CcHHHHHHHHHhhccchHHhhCCcccccc
Confidence 1 456678899999999986332 35689999999999999999999987653
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=99.94 E-value=2.1e-27 Score=227.26 Aligned_cols=208 Identities=32% Similarity=0.566 Sum_probs=177.2
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhhhhhhhhcc
Q 017717 43 VLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEK 122 (367)
Q Consensus 43 ~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~k 122 (367)
.+..-...+...+..|.+||.+++.++++..++++.|+++|...++|+|.+|+.|| +
T Consensus 22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii-----------------------~ 78 (260)
T KOG1508|consen 22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELI-----------------------K 78 (260)
T ss_pred ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHH-----------------------h
Confidence 34556778889999999999999999999999999999999999999999999999 7
Q ss_pred CCCcchHHHHhcchhhhcccchhhHHhhccccccEEEEeCCCC-ceEEEEEeCCCCCccCceEEEEEEecCCCCcceecc
Q 017717 123 GVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKA 201 (367)
Q Consensus 123 gIP~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~~~ed~~-gF~L~F~F~~NpYF~N~vLtK~y~~~~~~~p~~~~~ 201 (367)
.||+||.+++.||+.++.+|..+|..+|.||..+.|..+.+.. ||++.|+|.+|+||+|.+++|.|++...+.+ .+
T Consensus 79 ~i~~fw~~~~~~hp~~~~~i~~~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~~~---~s 155 (260)
T KOG1508|consen 79 EIPNFWVTAFLNHPTLSEWIPEEDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESGKP---SS 155 (260)
T ss_pred hcccceeEEEecCCcHhhhhhhhhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeecccCc---cc
Confidence 8999999999999999999999999999999999999877654 9999999999999999999999999888765 57
Q ss_pred eeeeeeecCCCCCchhhhhcCCCCCCCCCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhh
Q 017717 202 IGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIR 281 (367)
Q Consensus 202 ~gt~I~Wk~GknlT~k~~kKk~kkg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~ 281 (367)
.+|+|.|+.|+.+......- ..+++ ..-...|||.||+....+.. | +|+..|+
T Consensus 156 ~~t~i~w~~~~~~~~~~~~~--~~~~k------~~~~~~s~f~wf~~~~~~~~----d---------------~i~ei~~ 208 (260)
T KOG1508|consen 156 ESTPISWKEGKPLPNPVKRG--ELKNK------NGDGPKSFFEWFSDTSLKEF----D---------------EILEIIK 208 (260)
T ss_pred ccccccccCCCCCccccccc--ccccc------cCcccccHHHHHHhccCCCc----c---------------chhhhhh
Confidence 89999999999887654311 00111 11357899999998876651 1 5899999
Q ss_pred hhcccchhhhhccccccccccc
Q 017717 282 DKIIPHAVSWFTGEAIQEEEIE 303 (367)
Q Consensus 282 d~IiP~AV~yftGea~~~d~~~ 303 (367)
+.++|+++.||+--.....+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~ 230 (260)
T KOG1508|consen 209 DELWPNPLQYYLEPDGEEASEE 230 (260)
T ss_pred cccccchhhhhccccccccccc
Confidence 9999999999986655554433
No 6
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=97.82 E-value=2e-05 Score=78.62 Aligned_cols=73 Identities=15% Similarity=-0.001 Sum_probs=55.9
Q ss_pred cccccccccccccccccCCCCCCCCCChhHH-HHHHHhhhccccchhhhhhhcccchhhhhccccccccccccC
Q 017717 233 ITKTEECESFFNFFNPPQVPEDDEDIDEDTA-EELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELD 305 (367)
Q Consensus 233 v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~-ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d~~~d~ 305 (367)
++.++......+||+++.+|..+...+.+.. ++-.+.++.-+++.+.|+..|....|++.+-++++++..+++
T Consensus 211 ~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ikd~IIP~AV~yftGea~d~~~ 284 (337)
T PTZ00007 211 TRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRDKLIPYAVYWFLGEAIDEDS 284 (337)
T ss_pred ceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHHHhcccccHHhhCCCcccccc
Confidence 3445567889999999999987764332222 233456777889999999999999999999999999865554
No 7
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=95.66 E-value=0.0056 Score=62.70 Aligned_cols=6 Identities=67% Similarity=0.678 Sum_probs=2.3
Q ss_pred cccccc
Q 017717 295 EAIQEE 300 (367)
Q Consensus 295 ea~~~d 300 (367)
+|..++
T Consensus 48 EA~~EE 53 (458)
T PF10446_consen 48 EAEEEE 53 (458)
T ss_pred HHhhcc
Confidence 333333
No 8
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=0.0061 Score=60.70 Aligned_cols=92 Identities=22% Similarity=0.208 Sum_probs=63.0
Q ss_pred eeeeeecCCCCCchh---hhhcC--CCCCCC-CCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhh-hcccc
Q 017717 203 GTEIEWYPGKCLTQK---LLKKK--PKKGSK-NAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQM-EQDYD 275 (367)
Q Consensus 203 gt~I~Wk~GknlT~k---~~kKk--~kkg~k-~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l-~~D~e 275 (367)
|..|.--.|..+-=+ -+..| +||.++ +++++..++++...-+||+++++| . +.+ .+++.+.+ +.-++
T Consensus 241 G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP-~---ipd--~~d~Ded~~~~~L~ 314 (358)
T KOG1507|consen 241 GPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPP-E---IPD--EEDLDEDDLEELLE 314 (358)
T ss_pred CceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCC-C---CCc--ccccCchHHHHHHH
Confidence 456665566433221 11112 334443 356677889999999999999987 2 221 12233444 66678
Q ss_pred chhhhhhhcccchhhhhcccccccc
Q 017717 276 IGSTIRDKIIPHAVSWFTGEAIQEE 300 (367)
Q Consensus 276 ig~~I~d~IiP~AV~yftGea~~~d 300 (367)
..+.|+..|..+.|+..+-|++|+.
T Consensus 315 ~DyeIG~~lr~~IIPrAV~~fTGea 339 (358)
T KOG1507|consen 315 LDYEIGETLRDKIIPRAVLWFTGEA 339 (358)
T ss_pred hhHHHHHHHHhhhhhheeeeecccc
Confidence 9999999999999999999999998
No 9
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=93.51 E-value=0.059 Score=52.01 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.4
Q ss_pred eeeeee
Q 017717 203 GTEIEW 208 (367)
Q Consensus 203 gt~I~W 208 (367)
-|.|-+
T Consensus 187 RCK~cf 192 (314)
T PF06524_consen 187 RCKICF 192 (314)
T ss_pred heeeee
Confidence 344433
No 10
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=93.36 E-value=0.28 Score=35.68 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017717 58 LREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (367)
Q Consensus 58 Lk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~k 93 (367)
+..||..+..|...+..|+.+|.+.|+.+++||.+.
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 357788889999999999999999999999999875
No 11
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.03 E-value=0.056 Score=59.81 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=12.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 46 KLTPAVRKRVEVLREIQSEHDELEAKF 72 (367)
Q Consensus 46 ~Lp~~v~~rv~aLk~lQ~e~~~le~~f 72 (367)
++....-.++.-++.++.-...+..+-
T Consensus 334 ~~g~q~fd~~t~~k~i~~il~~~~~~~ 360 (784)
T PF04931_consen 334 SLGNQNFDQITKTKTIEQILLSLDVDG 360 (784)
T ss_pred cccchHHHHHHHHHHHHHHHhccchHH
Confidence 333333344555555555444444333
No 12
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.55 E-value=0.1 Score=57.77 Aligned_cols=6 Identities=0% Similarity=0.390 Sum_probs=2.3
Q ss_pred hhcccc
Q 017717 282 DKIIPH 287 (367)
Q Consensus 282 d~IiP~ 287 (367)
..||+.
T Consensus 610 ~~vf~~ 615 (784)
T PF04931_consen 610 EQVFEA 615 (784)
T ss_pred HHHHHH
Confidence 333333
No 13
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=90.11 E-value=0.088 Score=46.94 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=11.6
Q ss_pred EEEeCC--CCCccCceEEEEEEecC
Q 017717 170 EFYFDP--NPYFKNSVLTKTYHMID 192 (367)
Q Consensus 170 ~F~F~~--NpYF~N~vLtK~y~~~~ 192 (367)
.++|++ |.--.....-++..+..
T Consensus 17 ~~~f~~~~~d~~~h~L~L~~v~Lga 41 (149)
T PF03066_consen 17 DYTFKVDDNDENEHQLSLRQVCLGA 41 (149)
T ss_dssp EEEE-TTSSSSSCEEEEEEEEEE-T
T ss_pred eEEEeCCCCCCcccEEEEEEeecCC
Confidence 467776 44444444446666653
No 14
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=86.25 E-value=1.9 Score=47.42 Aligned_cols=111 Identities=19% Similarity=0.175 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhhhhhhhhccCCCcchH
Q 017717 52 RKRVEVLREIQS--EHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWL 129 (367)
Q Consensus 52 ~~rv~aLk~lQ~--e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWl 129 (367)
-..|..|-.-+. ..++|..+- +-...+++.+..++..-.+-.+.-++..+... +-..-.-.|+|.= .
T Consensus 691 ~div~dlg~~~~~~D~del~~EQ--~Er~rr~~ln~~FksF~~kv~~~~~~~~efd~--------pfr~lGF~GvP~r-s 759 (960)
T KOG1189|consen 691 GDIVTDLGKRRRMGDRDELEQEQ--EERDRRAKLNMAFKSFAEKVAEATESELEFDV--------PFRELGFNGVPFR-S 759 (960)
T ss_pred hhHHHhhccCccccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccceeecc--------chhhcCcCCCCcc-c
Confidence 333555555454 444444332 22334455555555555555555555444220 0001123466633 3
Q ss_pred HHHhcchhhhcccchhhHHhh-ccccccEEEEeC----CCCceEEEEEeC
Q 017717 130 TAMKNNDVLSEEITERDEGAL-KFLKDIKWFRID----DPKGFKLEFYFD 174 (367)
Q Consensus 130 tal~N~~~l~~~I~e~De~iL-k~L~DI~v~~~e----d~~gF~L~F~F~ 174 (367)
+||. -|.-+++++-.+.|.| -.|.+|.+..++ ..+.|-+.|.|+
T Consensus 760 sv~i-~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfK 808 (960)
T KOG1189|consen 760 SVFI-QPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFK 808 (960)
T ss_pred eeee-ecchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEec
Confidence 3332 2345666666666655 578888877654 345888899994
No 15
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.84 E-value=0.48 Score=54.18 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhchhHH
Q 017717 76 RAALEAKYQKLYQPMYT 92 (367)
Q Consensus 76 ~~~LE~ky~k~~~Ply~ 92 (367)
+.+|+.+|.+.|..||.
T Consensus 1443 ~falenkiLkd~Sslfv 1459 (3015)
T KOG0943|consen 1443 LFALENKILKDQSSLFV 1459 (3015)
T ss_pred hHHHHHHHHhhhhhhhh
Confidence 46777788777777664
No 16
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=82.80 E-value=0.39 Score=42.85 Aligned_cols=6 Identities=17% Similarity=0.229 Sum_probs=2.3
Q ss_pred EEEecC
Q 017717 187 TYHMID 192 (367)
Q Consensus 187 ~y~~~~ 192 (367)
.|++..
T Consensus 17 ~~~f~~ 22 (149)
T PF03066_consen 17 DYTFKV 22 (149)
T ss_dssp EEEE-T
T ss_pred eEEEeC
Confidence 455443
No 17
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=76.97 E-value=2.1 Score=41.51 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhchhHHHHHHHhh
Q 017717 46 KLTPAVRKRVEVLREIQSEHDELEAKF----FEERAALEAKYQKLYQPMYTKRYEIVN 99 (367)
Q Consensus 46 ~Lp~~v~~rv~aLk~lQ~e~~~le~~f----~~E~~~LE~ky~k~~~Ply~kR~eII~ 99 (367)
++|...-.||.-=++...-+..|...+ ..-+|++.+++-++.|=|..-|+=-+.
T Consensus 71 H~P~klwErikLSkNyekALeQIde~Ll~Wp~~~~HKcKQRltklTQylir~rklalr 128 (303)
T KOG3064|consen 71 HMPRKLWERIKLSKNYEKALEQIDEQLLYWPKYVIHKCKQRLTKLTQYLIRMRKLALR 128 (303)
T ss_pred cCcHHHHHHHhcchhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577777777766666666666665554 235677888888888888877776665
No 18
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.34 E-value=1.3 Score=49.48 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=4.4
Q ss_pred hhcccccc
Q 017717 149 ALKFLKDI 156 (367)
Q Consensus 149 iLk~L~DI 156 (367)
++.||+++
T Consensus 1219 l~tylt~~ 1226 (1516)
T KOG1832|consen 1219 LQTYLTDT 1226 (1516)
T ss_pred HHHhcCcc
Confidence 34556655
No 19
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=76.26 E-value=12 Score=32.87 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhh
Q 017717 51 VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (367)
Q Consensus 51 v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~ 99 (367)
+-..+..|..||.++..+++.+..++.++..+|.....||-.+...+-.
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~ 53 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEG 53 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999888874
No 20
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=75.79 E-value=2.3 Score=47.74 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.7
Q ss_pred hhHHHH
Q 017717 89 PMYTKR 94 (367)
Q Consensus 89 Ply~kR 94 (367)
-+.++|
T Consensus 69 ~f~DrR 74 (840)
T PF04147_consen 69 GFVDRR 74 (840)
T ss_pred cccccc
Confidence 344444
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=75.45 E-value=1.8 Score=49.93 Aligned_cols=11 Identities=36% Similarity=0.311 Sum_probs=5.0
Q ss_pred ccccccccccc
Q 017717 294 GEAIQEEEIEL 304 (367)
Q Consensus 294 Gea~~~d~~~d 304 (367)
|++.++++..|
T Consensus 1728 ~ef~GEed~~D 1738 (3015)
T KOG0943|consen 1728 GEFAGEEDHHD 1738 (3015)
T ss_pred ccccCcccccc
Confidence 44445444443
No 22
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.20 E-value=2.3 Score=47.78 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=4.4
Q ss_pred CccCceEE
Q 017717 178 YFKNSVLT 185 (367)
Q Consensus 178 YF~N~vLt 185 (367)
.|.|-+||
T Consensus 1245 IlndGvLW 1252 (1516)
T KOG1832|consen 1245 ILNDGVLW 1252 (1516)
T ss_pred EeeCceee
Confidence 35555665
No 23
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=60.52 E-value=45 Score=31.49 Aligned_cols=62 Identities=10% Similarity=0.327 Sum_probs=37.7
Q ss_pred chhHHHHHHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 22 RADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKL 86 (367)
Q Consensus 22 ~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~ 86 (367)
..++...|..-|..+.+...+.|...-.....+ ++.|+.++..++.++......|..+|.++
T Consensus 169 ~~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~---~~~~~~~i~~~~~rl~~~~~~l~~qf~~m 230 (239)
T PF07195_consen 169 TSGIATRLNDYLDSYTGSSTGSITSRIDSLNSQ---IKSLDKQIEDLEERLESKEERLRKQFSAM 230 (239)
T ss_pred cccHHHHHHHHHHHHhCCCCcchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777766656666555544433 35566677777666666666666666544
No 24
>PRK06798 fliD flagellar capping protein; Validated
Probab=59.14 E-value=35 Score=35.56 Aligned_cols=74 Identities=11% Similarity=0.274 Sum_probs=39.5
Q ss_pred CCCCchhhhhHhhCcccchhHHHH-----------HHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 5 KDNFNVTDLRASLDEGARADLVGV-----------LKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFF 73 (367)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~ 73 (367)
+-.+|-..|..||. .||.-|.. |...|..+.+ ..+.|..--... -..++.|+.++..++.++.
T Consensus 330 ~L~lD~~kL~~al~--~np~~V~~lF~g~~Gia~~l~~~l~~~~~-~~G~i~~r~~~l---~~~i~~l~~~~~~~e~rl~ 403 (440)
T PRK06798 330 TMKVDEEALKKALK--ENPDAAKQFFFGINGLGKEMEKSLDKIFG-DEGIIGERSKSI---DNRVSKLDLKITDIDTQNK 403 (440)
T ss_pred CEEEcHHHHHHHHH--HCHHHHHHHhcCCCcHHHHHHHHHHhhhC-CCceeehhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 34556666777776 45555554 4566666665 334433322222 2334556666666666655
Q ss_pred HHHHHHHHHHH
Q 017717 74 EERAALEAKYQ 84 (367)
Q Consensus 74 ~E~~~LE~ky~ 84 (367)
....+|.++|.
T Consensus 404 ~~e~~l~~qf~ 414 (440)
T PRK06798 404 QKQDNIVDKYQ 414 (440)
T ss_pred HHHHHHHHHHH
Confidence 55455555554
No 25
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=58.12 E-value=11 Score=31.45 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhc
Q 017717 47 LTPAVRKRVEVLREIQSEHDELEAKF-----------FEERAALEAKYQKLYQ 88 (367)
Q Consensus 47 Lp~~v~~rv~aLk~lQ~e~~~le~~f-----------~~E~~~LE~ky~k~~~ 88 (367)
-.+.+..-...|..|+.+++.++... .+++..|+.+|+++|+
T Consensus 51 d~~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 51 DSAEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 44556667888999999888887644 4577888888888774
No 26
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=57.27 E-value=33 Score=30.52 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHh
Q 017717 49 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (367)
Q Consensus 49 ~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII 98 (367)
.+|..-|..|-.||.++..|+.++..++.+++..|..+..||-..-..+.
T Consensus 18 eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~ 67 (170)
T COG4396 18 EEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLT 67 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHH
Confidence 45777889999999999999999999999999999999999876655554
No 27
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=55.41 E-value=42 Score=27.18 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=36.5
Q ss_pred chhHHHHHHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017717 22 RADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKR 94 (367)
Q Consensus 22 ~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR 94 (367)
.-.+-.+|..-|+.-.|..+..-.+||+.++.-|..+..+..+ |..||.+-..+|.-+|.+|
T Consensus 27 E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~e-----------V~~LE~~v~~L~~~l~~q~ 88 (88)
T PF14389_consen 27 EQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAE-----------VAKLEQKVLSLYRQLFQQR 88 (88)
T ss_pred HHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcC
Confidence 3445556666555555544443468898886555555444433 5566666667777676654
No 28
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=54.23 E-value=6.9 Score=46.88 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=7.1
Q ss_pred eeeeeecCCCCCchhh
Q 017717 203 GTEIEWYPGKCLTQKL 218 (367)
Q Consensus 203 gt~I~Wk~GknlT~k~ 218 (367)
|..|.. |++-.+++
T Consensus 78 ~~~i~m--~~~~~~~~ 91 (2849)
T PTZ00415 78 GDAIRM--GKDTSVKI 91 (2849)
T ss_pred cCceee--ccccccce
Confidence 344443 66665554
No 29
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=49.11 E-value=10 Score=42.18 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=6.8
Q ss_pred eCCCCCccCc
Q 017717 173 FDPNPYFKNS 182 (367)
Q Consensus 173 F~~NpYF~N~ 182 (367)
++.||-|.|.
T Consensus 692 r~R~P~f~nA 701 (988)
T KOG2038|consen 692 RKRNPLFCNA 701 (988)
T ss_pred ccCCccccCC
Confidence 3568888775
No 30
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.41 E-value=11 Score=41.86 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=3.9
Q ss_pred cccccc-ccc
Q 017717 239 CESFFN-FFN 247 (367)
Q Consensus 239 ~eSFFn-FF~ 247 (367)
-+-||. ||+
T Consensus 802 de~fFhry~~ 811 (988)
T KOG2038|consen 802 DELFFHRYYS 811 (988)
T ss_pred hHHHHHHHhh
Confidence 344544 444
No 31
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=48.03 E-value=63 Score=29.95 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhcc
Q 017717 56 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 101 (367)
Q Consensus 56 ~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~ 101 (367)
.+|...|..+...+-.-.+.+++...=-+.++.-+|..|+.|+.|.
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~~ 54 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEGE 54 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5678889999988888888888888888899999999999999765
No 32
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=46.79 E-value=6.5 Score=43.48 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=5.0
Q ss_pred chhHHHHHHHHh
Q 017717 22 RADLVGVLKNKL 33 (367)
Q Consensus 22 ~~~~~~~l~~~l 33 (367)
-|.+|..|+.|.
T Consensus 86 ~~evv~~L~~~~ 97 (713)
T PF03344_consen 86 MPEVVKFLKRRY 97 (713)
T ss_dssp -TTHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 344444444443
No 33
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=43.49 E-value=95 Score=25.15 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=43.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhh
Q 017717 45 EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (367)
Q Consensus 45 ~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~ 99 (367)
..|-+.......++..|...+..++.........+...|..++.-|-.++..++.
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~ 64 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLE 64 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677788888888888888888888999999999888888888884
No 34
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.46 E-value=1.1e+02 Score=28.17 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=30.1
Q ss_pred hCcccchhHHHHHHHHhhhhcCCCchhhccCCHHHHHH-HHHHHHHHHHHHH
Q 017717 17 LDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKR-VEVLREIQSEHDE 67 (367)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~r-v~aLk~lQ~e~~~ 67 (367)
|.....|+. +.|++++.++-..-.. ..|||+|+.- ..+|..|+.+++.
T Consensus 18 m~~~k~pgt-s~iK~qiRd~eRlLkk--~~LP~~Vr~e~er~L~~Lk~ql~~ 66 (199)
T KOG4484|consen 18 MRVEKKPGT-SSIKNQIRDLERLLKK--KDLPPEVREELERKLQDLKKQLDN 66 (199)
T ss_pred cchhcCCch-HHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 444555654 3467777766543221 5899999843 4677777777664
No 35
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=42.17 E-value=16 Score=44.09 Aligned_cols=6 Identities=33% Similarity=0.301 Sum_probs=2.6
Q ss_pred cccchh
Q 017717 284 IIPHAV 289 (367)
Q Consensus 284 IiP~AV 289 (367)
|||+.+
T Consensus 131 i~~~~~ 136 (2849)
T PTZ00415 131 IIKRRR 136 (2849)
T ss_pred EeehHH
Confidence 345433
No 36
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=42.09 E-value=50 Score=26.56 Aligned_cols=27 Identities=26% Similarity=0.628 Sum_probs=21.8
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHH
Q 017717 42 DVLEKLTPAVRKRVEVLREIQSEHDEL 68 (367)
Q Consensus 42 ~~~~~Lp~~v~~rv~aLk~lQ~e~~~l 68 (367)
+.+++||.++++.+.-++.|-.++..+
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~ 34 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDL 34 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHH
Confidence 357899999999999999888875544
No 37
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=40.91 E-value=1.9e+02 Score=24.74 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhchhHHHHHHHhhcc
Q 017717 62 QSEHDELEAKFFE---ERAALEAKYQKLYQPMYTKRYEIVNGV 101 (367)
Q Consensus 62 Q~e~~~le~~f~~---E~~~LE~ky~k~~~Ply~kR~eII~G~ 101 (367)
..++..|..+|.. +...++.+|...++-...++..||++.
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~ 129 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGE 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555543 556788899999999999999999754
No 38
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=40.54 E-value=9.2 Score=42.30 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred ccccccc
Q 017717 242 FFNFFNP 248 (367)
Q Consensus 242 FFnFF~~ 248 (367)
|=.+|+.
T Consensus 348 ~~~~lt~ 354 (713)
T PF03344_consen 348 FGCHLTD 354 (713)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4444433
No 39
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.46 E-value=95 Score=24.11 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 24 DLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAK 82 (367)
Q Consensus 24 ~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~k 82 (367)
..+++|+++|+.+....+.+-..+-.=.+.|=.++..|+..+..+. ++..++-.|.++
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~-~Lk~E~e~L~~e 62 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENN-KLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3578899999998876554422222223456666777777766653 566666666665
No 40
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=40.36 E-value=83 Score=32.92 Aligned_cols=56 Identities=11% Similarity=0.264 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 24 DLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKY 83 (367)
Q Consensus 24 ~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky 83 (367)
+++..|...|..+.+. .+.|........ ..++.|+.++..++.++.....+|.++|
T Consensus 385 G~~~~l~~~l~~~~~~-~G~l~~~~~~l~---~~i~~l~~~i~~~~~rl~~~e~rl~~qF 440 (462)
T PRK08032 385 GITTQIATNLKSWLST-TGIIKTATDGVN---KTLKKLTKQYNAVSDSIDATIARYKAQF 440 (462)
T ss_pred cHHHHHHHHHHHHHcC-CccchhHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666653 355433222222 2345556666665555544444444444
No 41
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.22 E-value=72 Score=31.57 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=11.7
Q ss_pred cchhhHHhhccccccEEE
Q 017717 142 ITERDEGALKFLKDIKWF 159 (367)
Q Consensus 142 I~e~De~iLk~L~DI~v~ 159 (367)
+.++|..|=+|..||.+.
T Consensus 140 L~ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 140 LAEKDKGIQKYFVDINIQ 157 (305)
T ss_pred hchhhhhHHHHHhhhhhh
Confidence 335677777777777664
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.37 E-value=1.3e+02 Score=26.83 Aligned_cols=68 Identities=25% Similarity=0.426 Sum_probs=34.5
Q ss_pred HHHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhchhHHHHHHHh
Q 017717 28 VLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF----FEERAALEAKYQKLYQPMYTKRYEIV 98 (367)
Q Consensus 28 ~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f----~~E~~~LE~ky~k~~~Ply~kR~eII 98 (367)
.|...|.+|...++. +.|...+...-..+..++.++..|.... ..++..++..| ..+.-.|.+|+.|.
T Consensus 97 ~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~-~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 97 SLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEY-KKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 344555555544432 1233333333333344444444443321 34666777666 56667888888875
No 43
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=38.41 E-value=24 Score=39.24 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=7.6
Q ss_pred hhhcccchhhhhc
Q 017717 281 RDKIIPHAVSWFT 293 (367)
Q Consensus 281 ~d~IiP~AV~yft 293 (367)
--+|...++.||.
T Consensus 852 mKTI~dDP~~Ffe 864 (960)
T KOG1189|consen 852 MKTITDDPIAFFE 864 (960)
T ss_pred hhhhccCHHHHHh
Confidence 3455666666664
No 44
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=37.62 E-value=20 Score=34.50 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.4
Q ss_pred EEEEEE
Q 017717 184 LTKTYH 189 (367)
Q Consensus 184 LtK~y~ 189 (367)
+++.|+
T Consensus 26 ~S~~~s 31 (244)
T PF04889_consen 26 PSKQYS 31 (244)
T ss_pred cccccc
Confidence 334443
No 45
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=37.32 E-value=1.4e+02 Score=25.82 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=30.0
Q ss_pred cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHh
Q 017717 46 KLTPAVR-KRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (367)
Q Consensus 46 ~Lp~~v~-~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII 98 (367)
+|++..+ .+.. .||.....+..........|....+..+.||+.+-..+|
T Consensus 72 ~ls~~~~~~~~~---~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v 122 (158)
T PF03938_consen 72 TLSEEERQKRQQ---ELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAV 122 (158)
T ss_dssp --SSHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 3333 444444444444445556677788888899998888887
No 46
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=36.34 E-value=1.2e+02 Score=23.25 Aligned_cols=30 Identities=40% Similarity=0.547 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHhh
Q 017717 70 AKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (367)
Q Consensus 70 ~~f~~E~~~LE~ky~k~~~Ply~kR~eII~ 99 (367)
..|.+++..||..|.+.+.-|..+=.....
T Consensus 29 ~~~~keRa~lE~~Yak~L~kl~~~~~~~~~ 58 (91)
T PF00611_consen 29 ASFFKERASLEEEYAKSLQKLAKKFKKKMK 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 368888899999999888888777666663
No 47
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.28 E-value=19 Score=40.89 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=9.6
Q ss_pred ccchhHHHHHHHHhhhhc
Q 017717 20 GARADLVGVLKNKLQNLA 37 (367)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~ 37 (367)
.++-.+..|+.....+|-
T Consensus 495 ~d~~~l~~ale~t~~~l~ 512 (1010)
T KOG1991|consen 495 KDPNNLSEALELTHNCLL 512 (1010)
T ss_pred CChHHHHHHHHHHHHHhc
Confidence 344455555555555554
No 48
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=35.99 E-value=1.7e+02 Score=22.63 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHH
Q 017717 70 AKFFEERAALEAKYQKLYQPMYTK 93 (367)
Q Consensus 70 ~~f~~E~~~LE~ky~k~~~Ply~k 93 (367)
..|.+++.++|..|.+.+.-|-.+
T Consensus 29 ~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 29 KKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999776
No 49
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.76 E-value=1.6e+02 Score=29.19 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=20.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q 017717 45 EKLTPAVRKRVEVLREIQSEHDELEA---KFFEERAALEAKYQKLYQ 88 (367)
Q Consensus 45 ~~Lp~~v~~rv~aLk~lQ~e~~~le~---~f~~E~~~LE~ky~k~~~ 88 (367)
..|..++.+|-..|..++..+..|+. .|..|.-..|...+++|+
T Consensus 136 a~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~ 182 (338)
T KOG3647|consen 136 AALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQ 182 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554432 233333334444444443
No 50
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=34.12 E-value=11 Score=26.09 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.2
Q ss_pred ceeeeeeecCCCCCc
Q 017717 201 AIGTEIEWYPGKCLT 215 (367)
Q Consensus 201 ~~gt~I~Wk~GknlT 215 (367)
-..|+.+|++|.++-
T Consensus 9 ~v~tPanW~pGd~~i 23 (40)
T PF10417_consen 9 GVATPANWKPGDDVI 23 (40)
T ss_dssp SSBBCTTTCTTSGEB
T ss_pred CcccCcCCCCCCCeE
Confidence 358999999998764
No 51
>PRK08724 fliD flagellar capping protein; Validated
Probab=33.58 E-value=1.7e+02 Score=32.50 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=33.6
Q ss_pred CchhhhhHhhCcccchh-----------HHHHHHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 8 FNVTDLRASLDEGARAD-----------LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEER 76 (367)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~ 76 (367)
+|-.-|..||. .||. |...|...|..+.+ ..+.| ..|...|..-...+..-...+.+.+
T Consensus 571 iD~~KL~~AL~--~npd~V~~LF~g~~GlA~rL~~~L~~~~~-t~G~I-------~~R~~sL~~~i~~l~dqi~~Le~Rl 640 (673)
T PRK08724 571 INYDMLDRQLN--NNFNKLEEFFGGNTGFAKRVEDAIQSMTG-VTGSI-------RTREKSLREQNYRLNDDQVALDRRM 640 (673)
T ss_pred ecHHHHHHHHH--hCHHHHHHHhcCCchHHHHHHHHHHHHhc-cCCch-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666655 3444 44445666666665 33443 3344444333333333333344444
Q ss_pred HHHHHHHHHHhc
Q 017717 77 AALEAKYQKLYQ 88 (367)
Q Consensus 77 ~~LE~ky~k~~~ 88 (367)
..+|.+|.++|.
T Consensus 641 e~~E~Ry~~QFt 652 (673)
T PRK08724 641 ESLEKRTHAKFA 652 (673)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 52
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=33.22 E-value=50 Score=33.48 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017717 57 VLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (367)
Q Consensus 57 aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~k 93 (367)
.|..||..+-.|.-.+.+++.+|.++|..+.+|||+.
T Consensus 455 ~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIlda 491 (502)
T KOG0574|consen 455 TLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDA 491 (502)
T ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHH
Confidence 4678888888888889999999999999999999975
No 53
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=32.44 E-value=1.5e+02 Score=32.68 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 58 LREIQSEHDELEAKFFEERAALEAKYQ 84 (367)
Q Consensus 58 Lk~lQ~e~~~le~~f~~E~~~LE~ky~ 84 (367)
|+.|+.++..++.++.....+|.++|.
T Consensus 609 i~~l~~~i~~~e~rl~~~e~rl~~QFt 635 (661)
T PRK06664 609 IADNNKKIEEYEKKLESKERKLKGKYL 635 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555555455555544
No 54
>PRK10780 periplasmic chaperone; Provisional
Probab=30.27 E-value=2.1e+02 Score=25.41 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=9.6
Q ss_pred HHHHHHhchhHHHHHHHh
Q 017717 81 AKYQKLYQPMYTKRYEIV 98 (367)
Q Consensus 81 ~ky~k~~~Ply~kR~eII 98 (367)
.+.+.+.+||+.+-...|
T Consensus 112 ~~~~e~~~~i~~ki~~ai 129 (165)
T PRK10780 112 RRSNEERNKILTRIQTAV 129 (165)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455556665555555
No 55
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=30.06 E-value=76 Score=30.08 Aligned_cols=59 Identities=20% Similarity=0.123 Sum_probs=39.6
Q ss_pred ccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhcccchhhhhccccccc
Q 017717 238 ECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQE 299 (367)
Q Consensus 238 ~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~ 299 (367)
....--+||+.+.++..+ +++..++-.+..+..++.+..|...|.-..+++.+-+++++
T Consensus 185 ~~~~~~SFF~~F~~~~~~---~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~yy~ge 243 (244)
T PF00956_consen 185 KEVPTESFFNFFSPPKLP---DEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKYYTGE 243 (244)
T ss_dssp CCCC--SGGGGSS-B-S-----TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTC
T ss_pred ecccCcchhhhcccCCCC---cccccccchhhHHHHhhccHHHHHHHHhheechHHHHhCCC
Confidence 344567999999977655 23333334455556678899999999999999999888775
No 56
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=28.96 E-value=88 Score=26.39 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=25.7
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHH
Q 017717 44 LEKLTPAVRKRVEVLREIQSEHDE--L-EAKFFEERAALEAKYQK 85 (367)
Q Consensus 44 ~~~Lp~~v~~rv~aLk~lQ~e~~~--l-e~~f~~E~~~LE~ky~k 85 (367)
+..||+.||.++ +.|..++.. | +.-|.+++.+|=..|..
T Consensus 2 ~s~LP~evq~~L---~~L~~el~~GdiT~KGY~kkr~~LL~~yl~ 43 (111)
T PF06464_consen 2 PSSLPPEVQNRL---QELDLELEEGDITQKGYEKKRSKLLAPYLP 43 (111)
T ss_pred cccCCHHHHHHH---HHHHHhhhcCcchHHHHHHHHHHHHHHHHh
Confidence 357999999766 444555544 4 44566777777777754
No 57
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.64 E-value=1.8e+02 Score=23.47 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=26.9
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 41 SDVLEKLTPAVRKRVEVLREIQSEHDELEAK 71 (367)
Q Consensus 41 ~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~ 71 (367)
-+.++.|-.+|+..|+.+.-||.++.+|..+
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKek 33 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999998765
No 58
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.42 E-value=1.9e+02 Score=31.34 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=49.9
Q ss_pred ccchhHHHHHHHHhhhhcCCCchh---hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 017717 20 GARADLVGVLKNKLQNLAGQHSDV---LEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYE 96 (367)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~~~~~~~---~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~e 96 (367)
.-+|.-+..+..||..|.+..-.| ++.|+....+....|..|...-..+ ..+..++..+..+|.+.-+-|-..|+.
T Consensus 293 e~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~-~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 293 EFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESL-EALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888877666544443 4444444444444444443333332 356677888888999888889888888
Q ss_pred Hh
Q 017717 97 IV 98 (367)
Q Consensus 97 II 98 (367)
.-
T Consensus 372 ~A 373 (557)
T COG0497 372 AA 373 (557)
T ss_pred HH
Confidence 77
No 59
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=27.63 E-value=45 Score=35.32 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.8
Q ss_pred hcccchhhhhccc
Q 017717 283 KIIPHAVSWFTGE 295 (367)
Q Consensus 283 ~IiP~AV~yftGe 295 (367)
-+.|.++.-|+|.
T Consensus 172 mLlPCg~D~F~Gv 184 (615)
T KOG3540|consen 172 MLLPCGLDMFRGV 184 (615)
T ss_pred ceeccccccccCc
Confidence 4789999999984
No 60
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.01 E-value=3.2e+02 Score=21.63 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=26.5
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 41 SDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 72 (367)
Q Consensus 41 ~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f 72 (367)
-+.++.|..+|+..|.-+.-||.++.+|..+-
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEkn 34 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888999999999999999999886543
No 61
>PRK10869 recombination and repair protein; Provisional
Probab=25.94 E-value=4.1e+02 Score=28.50 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=16.8
Q ss_pred eEEEEEeCCCCCccCceEEEEE
Q 017717 167 FKLEFYFDPNPYFKNSVLTKTY 188 (367)
Q Consensus 167 F~L~F~F~~NpYF~N~vLtK~y 188 (367)
-.|.|.|.+||=....-|.|.+
T Consensus 410 d~veF~~~~n~g~~~~pL~k~l 431 (553)
T PRK10869 410 DRIEFRVTTNPGQPLQPIAKVA 431 (553)
T ss_pred eEEEEEEecCCCCCcchhhhhC
Confidence 4689999999977776666655
No 62
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=25.84 E-value=32 Score=38.27 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=8.1
Q ss_pred EEEEeCCCCCccCce
Q 017717 169 LEFYFDPNPYFKNSV 183 (367)
Q Consensus 169 L~F~F~~NpYF~N~v 183 (367)
+.++|.-|+|=-|.|
T Consensus 687 ~~Is~tn~~yn~~~v 701 (911)
T PF05086_consen 687 LNISITNTAYNANRV 701 (911)
T ss_pred EEEEEecccccceee
Confidence 455555556654444
No 63
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.66 E-value=1.3e+02 Score=32.05 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH----HHHHHhhccccCCcccccchhhhhhhhhccCC
Q 017717 49 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYT----KRYEIVNGVVEGAPNEVAMDQEEDKATEEKGV 124 (367)
Q Consensus 49 ~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~----kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgI 124 (367)
|.+++.|..+...+.++.+-+.++.+-...+..+|.+.++-+=- -|.+|+ ..++.+
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl--------------------~l~~~L 186 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELL--------------------ELVKEL 186 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHH--------------------HHHHhh
Confidence 56788888999999999999999999999999999888766521 244444 124789
Q ss_pred CcchHHHHhcchhhh
Q 017717 125 PDFWLTAMKNNDVLS 139 (367)
Q Consensus 125 P~FWltal~N~~~l~ 139 (367)
|.++..+......+.
T Consensus 187 P~~~~~i~~~i~~l~ 201 (507)
T PF05600_consen 187 PSLFDEIVEAISDLQ 201 (507)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888876554443
No 64
>PRK01546 hypothetical protein; Provisional
Probab=25.55 E-value=99 Score=24.89 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017717 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 91 (367)
Q Consensus 47 Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply 91 (367)
++..+..||..|.+.+.. ..|...=..|..+|++.|-..++--+
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 45 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFRQNM 45 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999988886 55666667788899999976665444
No 65
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=24.79 E-value=34 Score=36.73 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=5.6
Q ss_pred ccchhhhhcc
Q 017717 285 IPHAVSWFTG 294 (367)
Q Consensus 285 iP~AV~yftG 294 (367)
.|=||.|.+.
T Consensus 186 R~VAVDWAV~ 195 (678)
T KOG0127|consen 186 RPVAVDWAVD 195 (678)
T ss_pred ceeEEeeecc
Confidence 3556666554
No 66
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.78 E-value=40 Score=38.50 Aligned_cols=9 Identities=33% Similarity=0.881 Sum_probs=4.6
Q ss_pred ccccc-cccc
Q 017717 240 ESFFN-FFNP 248 (367)
Q Consensus 240 eSFFn-FF~~ 248 (367)
.+||. ||+.
T Consensus 817 ~~ff~~wf~~ 826 (1010)
T KOG1991|consen 817 NNFFTLWFQF 826 (1010)
T ss_pred ccHHHHHHHH
Confidence 34554 6654
No 67
>PF14992 TMCO5: TMCO5 family
Probab=23.39 E-value=1.5e+02 Score=29.31 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=10.6
Q ss_pred cCCCcchHHHHhc
Q 017717 122 KGVPDFWLTAMKN 134 (367)
Q Consensus 122 kgIP~FWltal~N 134 (367)
++-|-||.++|+-
T Consensus 208 ~~~~~~wkr~lr~ 220 (280)
T PF14992_consen 208 KNSPTFWKRALRL 220 (280)
T ss_pred hhhhHHHHHHHHH
Confidence 4558999999986
No 68
>PRK02539 hypothetical protein; Provisional
Probab=22.76 E-value=1.3e+02 Score=24.58 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017717 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 91 (367)
Q Consensus 47 Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply 91 (367)
++.++..||..|...+.. ..|..+=..|..+|++.|-+.++--+
T Consensus 1 M~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 44 (85)
T PRK02539 1 MDPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSV 44 (85)
T ss_pred CCHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677899999988876 55555666788889999976665444
No 69
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.39 E-value=68 Score=29.78 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhchhHH
Q 017717 75 ERAALEAKYQKLYQPMYT 92 (367)
Q Consensus 75 E~~~LE~ky~k~~~Ply~ 92 (367)
|..+-.+|| .+|+||-+
T Consensus 50 EqieWk~KY-~KYKpLt~ 66 (227)
T KOG3241|consen 50 EQIEWKRKY-GKYKPLTE 66 (227)
T ss_pred HHHHHHHHh-ccccccch
Confidence 444455566 56677654
No 70
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=21.66 E-value=46 Score=37.18 Aligned_cols=12 Identities=8% Similarity=0.503 Sum_probs=5.1
Q ss_pred CccCceEEEEEE
Q 017717 178 YFKNSVLTKTYH 189 (367)
Q Consensus 178 YF~N~vLtK~y~ 189 (367)
||-.+.+-+-|+
T Consensus 733 Y~g~Tr~IrafF 744 (911)
T PF05086_consen 733 YMGKTRVIRAFF 744 (911)
T ss_pred HcCCceEEEEEe
Confidence 444444444443
No 71
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=21.53 E-value=58 Score=35.12 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=6.2
Q ss_pred chHHHHhcch
Q 017717 127 FWLTAMKNND 136 (367)
Q Consensus 127 FWltal~N~~ 136 (367)
=|.-+++|.|
T Consensus 117 k~rLIIRNLP 126 (678)
T KOG0127|consen 117 KWRLIIRNLP 126 (678)
T ss_pred cceEEeecCC
Confidence 4666666665
No 72
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=21.49 E-value=65 Score=30.45 Aligned_cols=7 Identities=43% Similarity=0.804 Sum_probs=2.9
Q ss_pred hhHHHHH
Q 017717 89 PMYTKRY 95 (367)
Q Consensus 89 Ply~kR~ 95 (367)
|+|....
T Consensus 69 Pyy~~~~ 75 (233)
T PF11705_consen 69 PYYTESR 75 (233)
T ss_pred CCccccc
Confidence 4443333
No 73
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=20.99 E-value=4.1e+02 Score=23.65 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=38.4
Q ss_pred HhhCcccchhHHHHHHHHhhhhcCCCchhhccCCHHHHHHHHHH-HHHHHHHHHHHHHH
Q 017717 15 ASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVL-REIQSEHDELEAKF 72 (367)
Q Consensus 15 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL-k~lQ~e~~~le~~f 72 (367)
.-++.++=+.+.+.|-+.++.|-..-...+.+||+..|+.+..| +.|=.-+.+|..-.
T Consensus 57 ~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA 115 (142)
T TIGR03042 57 SLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAA 115 (142)
T ss_pred HHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555666666666666665555556789999999888877 56666666665433
No 74
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=20.96 E-value=53 Score=31.07 Aligned_cols=8 Identities=38% Similarity=0.941 Sum_probs=3.7
Q ss_pred CCCccCce
Q 017717 176 NPYFKNSV 183 (367)
Q Consensus 176 NpYF~N~v 183 (367)
-|||+-..
T Consensus 68 sPyy~~~~ 75 (233)
T PF11705_consen 68 SPYYTESR 75 (233)
T ss_pred CCCccccc
Confidence 35554443
No 75
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.92 E-value=4.1e+02 Score=20.75 Aligned_cols=45 Identities=31% Similarity=0.488 Sum_probs=30.0
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 017717 43 VLEKLTPAVRKRVEVLREIQSEHDELEAK---FFEERAALEAKYQKLY 87 (367)
Q Consensus 43 ~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~---f~~E~~~LE~ky~k~~ 87 (367)
.++.|-..|...|..+..||.++..|..+ ...+...|..+..++.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888888664 3344555555554443
No 76
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.74 E-value=2.8e+02 Score=29.43 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=27.0
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017717 44 LEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLY 87 (367)
Q Consensus 44 ~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~ 87 (367)
+.-|-.+-..|-..+..||.++.+-+.+-..|+.+|..+|.++.
T Consensus 480 LdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 480 LDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444455555666777777777666777777777766654
No 77
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=3.6e+02 Score=26.51 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=17.0
Q ss_pred CCCcchHHHHhcchhhhcccch
Q 017717 123 GVPDFWLTAMKNNDVLSEEITE 144 (367)
Q Consensus 123 gIP~FWltal~N~~~l~~~I~e 144 (367)
|=-.+++.|+.++..|+++|+.
T Consensus 114 G~~t~Yidvil~SkSfsD~IsR 135 (265)
T COG3883 114 GTATSYIDVILNSKSFSDLISR 135 (265)
T ss_pred CChhHHHHHHHccCcHHHHHHH
Confidence 4456689999999888888763
No 78
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.12 E-value=2.9e+02 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.9
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHH
Q 017717 44 LEKLTPAVRKRVEVLREIQSEHDELEA 70 (367)
Q Consensus 44 ~~~Lp~~v~~rv~aLk~lQ~e~~~le~ 70 (367)
+..|||.+++.+..+..||.++..+-.
T Consensus 1 ~~~lpp~~q~~l~q~QqLq~ql~~~~~ 27 (119)
T COG1382 1 MEQLPPEVQAQLAQLQQLQQQLQKVIL 27 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999887643
Done!