Query 017717
Match_columns 367
No_of_seqs 250 out of 706
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:48:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayu_A Nucleosome assembly pro 100.0 1.8E-88 6.1E-93 681.3 14.5 281 20-302 61-370 (417)
2 3fs3_A Nucleosome assembly pro 100.0 9.6E-72 3.3E-76 548.0 20.2 265 24-301 20-298 (359)
3 2e50_A Protein SET; histone ch 100.0 2.7E-59 9.4E-64 437.2 17.8 208 36-293 13-221 (225)
4 2zd7_A VPS75, vacuolar protein 100.0 3.3E-60 1.1E-64 452.9 11.4 203 56-299 9-223 (264)
5 3kyp_A Pfnaps, nucleosome asse 100.0 2.4E-55 8.3E-60 402.0 12.1 188 55-296 2-192 (193)
6 2ayu_A Nucleosome assembly pro 97.8 1.3E-06 4.4E-11 88.0 -3.1 66 237-305 304-369 (417)
7 2zd7_A VPS75, vacuolar protein 95.1 0.0027 9.2E-08 60.2 -0.9 48 240-301 174-221 (264)
8 2jo8_A Serine/threonine-protei 92.4 0.48 1.6E-05 33.8 6.8 44 41-93 4-47 (51)
9 2ca6_A RAN GTPase-activating p 92.2 0.032 1.1E-06 53.5 0.5 10 129-138 180-189 (386)
10 3fs3_A Nucleosome assembly pro 87.6 0.12 4E-06 50.9 0.3 69 234-302 226-295 (359)
11 4fp9_B Mterf domain-containing 73.0 0.72 2.4E-05 44.9 0.0 6 241-246 243-248 (335)
12 2p2u_A HOST-nuclease inhibitor 67.9 17 0.00057 31.7 7.8 49 51-99 18-66 (171)
13 2ke4_A CDC42-interacting prote 48.8 38 0.0013 27.0 6.1 32 42-78 6-37 (98)
14 2jee_A YIIU; FTSZ, septum, coi 38.6 99 0.0034 23.9 6.7 33 40-72 4-36 (81)
15 2byk_A Chrac-16; nucleosome sl 36.8 13 0.00045 31.6 1.6 8 283-290 94-101 (140)
16 4afl_A P29ING4, inhibitor of g 36.0 45 0.0015 26.2 4.6 30 42-71 11-40 (104)
17 3cx5_F Cytochrome B-C1 complex 35.3 7.9 0.00027 33.3 0.0 10 283-292 12-21 (146)
18 3g9g_A Suppressor of yeast pro 32.3 77 0.0026 29.9 6.4 47 43-93 35-86 (287)
19 2zqm_A Prefoldin beta subunit 28.1 1.2E+02 0.0041 23.7 6.0 28 45-72 2-29 (117)
20 3a7p_A Autophagy protein 16; c 26.9 1.8E+02 0.0063 24.9 7.1 51 44-94 84-137 (152)
21 3bhp_A UPF0291 protein YNZC; N 26.7 70 0.0024 23.4 3.8 42 47-89 2-43 (60)
22 2lh0_A Histone chaperone RTT10 24.7 44 0.0015 25.2 2.5 23 43-65 8-30 (70)
23 2byk_A Chrac-16; nucleosome sl 22.6 18 0.00062 30.7 0.0 11 237-247 83-93 (140)
24 2jvd_A UPF0291 protein YNZC; s 20.7 78 0.0027 22.6 3.0 41 47-88 2-42 (54)
25 1fio_A SSO1 protein; four heli 20.5 3.9E+02 0.013 22.6 9.3 36 65-100 86-124 (196)
26 2j8p_A Cleavage stimulation fa 20.3 77 0.0026 22.2 2.9 24 37-60 17-40 (49)
No 1
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=100.00 E-value=1.8e-88 Score=681.28 Aligned_cols=281 Identities=37% Similarity=0.673 Sum_probs=236.8
Q ss_pred ccchhHHHHHHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhh
Q 017717 20 GARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (367)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~ 99 (367)
.+||+|+++||+||++|+|++++||++||+.|++||.+|++||.++.+|+++|++++++||+||+++|+|||++|++||+
T Consensus 61 ~~~p~~~~~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~ 140 (417)
T 2ayu_A 61 ANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIIS 140 (417)
T ss_dssp ---------CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccchhh--------------------hhhhhhccCCCcchHHHHhcchhhhcccchhhHHhhccccccEEE
Q 017717 100 GVVEGAPNEVAMDQE--------------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWF 159 (367)
Q Consensus 100 G~~e~~~~E~~~~~~--------------------~~~~~~~kgIP~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~ 159 (367)
|.++|+.+|+.+... ......++|||+||+|||+||+.|+.||+++|++||+||+||+|+
T Consensus 141 G~~ept~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve 220 (417)
T 2ayu_A 141 GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLE 220 (417)
T ss_dssp TSSCCCHHHHHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECC
T ss_pred CCCCCchhhhcccccccchhhhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEE
Confidence 999999766542210 111234689999999999999999999999999999999999999
Q ss_pred EeCC-CCceEEEEEe--CCCCCccCceEEEEEEecCC----CCcceecceeeeeeecC-CCCCchhhhhcCCC-CCCCCC
Q 017717 160 RIDD-PKGFKLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNA 230 (367)
Q Consensus 160 ~~ed-~~gF~L~F~F--~~NpYF~N~vLtK~y~~~~~----~~p~~~~~~gt~I~Wk~-GknlT~k~~kKk~k-kg~k~~ 230 (367)
++.+ +.||+|+||| .+||||+|++|||+|+|... |.+++.+++||+|+||+ |||||+++++||+| |+++.+
T Consensus 221 ~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~ 300 (417)
T 2ayu_A 221 YLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQV 300 (417)
T ss_dssp BCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC--------
T ss_pred EccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcc
Confidence 9875 6699999999 99999999999999999754 34455689999999999 99999999988866 677889
Q ss_pred CccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhcccchhhhhcccccccccc
Q 017717 231 KPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEI 302 (367)
Q Consensus 231 r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d~~ 302 (367)
|+|+++++++||||||+|+.+|++++ +++..++++++|+.||+||++|+++|||+||.||||++++.++.
T Consensus 301 R~v~k~v~~~SFFnfFspp~~p~~de--de~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~~~e~e 370 (417)
T 2ayu_A 301 RTIEKITPIESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFE 370 (417)
T ss_dssp -CCEEEEECCCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHHHC
T ss_pred cccccCCCCCCceeecCCCCCCCccc--cccchHHHHHHHHHHHHHHHHHHhhccccHHHHhcccccccccc
Confidence 99999999999999999999988753 22334568899999999999999999999999999999998653
No 2
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=100.00 E-value=9.6e-72 Score=548.02 Aligned_cols=265 Identities=36% Similarity=0.618 Sum_probs=189.0
Q ss_pred hHHHHHHHHhhhhcCCC----chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhh
Q 017717 24 DLVGVLKNKLQNLAGQH----SDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (367)
Q Consensus 24 ~~~~~l~~~l~~l~~~~----~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~ 99 (367)
.+|.+++..+.+|...+ .++|++||+.||+||.+|+.||.++..|+++|++++++||+||+++|+|||++|++||+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~ 99 (359)
T 3fs3_A 20 SLLESIKIGKTSLKYRCFYLYDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALV 99 (359)
T ss_dssp -------------------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhccccchhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence 46777788888999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccchhhhhhhhhccCCCcchHHHHhcchhhhcccchhhHHhhccccccEEEEeC----CCCceEEEEEeCC
Q 017717 100 GVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID----DPKGFKLEFYFDP 175 (367)
Q Consensus 100 G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~~~e----d~~gF~L~F~F~~ 175 (367)
|..+.. ..++|||+||++||+||+.|+.+|+++|++||+||+||+|+++. .++||+|+|+|.+
T Consensus 100 G~~e~e-------------~~~kgIP~FWltvl~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~e 166 (359)
T 3fs3_A 100 GNGEAK-------------IGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFAT 166 (359)
T ss_dssp C---CC-------------SSSTTSTTHHHHHHHTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECS
T ss_pred Cccccc-------------cccCCCCcHHHHHHHhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCC
Confidence 975421 23479999999999999999999999999999999999999863 4679999999999
Q ss_pred CCCccCceEEEEEEecC---CCCcceecceeeeeeecCCCCCchhhhhcCCC-CCCCCCCccccccccccccccccccCC
Q 017717 176 NPYFKNSVLTKTYHMID---EDEPILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQV 251 (367)
Q Consensus 176 NpYF~N~vLtK~y~~~~---~~~p~~~~~~gt~I~Wk~GknlT~k~~kKk~k-kg~k~~r~v~k~~~~eSFFnFF~~~~~ 251 (367)
||||+|++|||+|+|.. .++|++..++||+|+||+|||||+++++||+| |+++.+|+|+++++++||||||+||.+
T Consensus 167 NpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~ 246 (359)
T 3fs3_A 167 NPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKV 246 (359)
T ss_dssp CSSBCCSEEEEEEEEC--------CEEEEEECCCCBCTTCCTTCC----------------------CCCGGGGSCCBCC
T ss_pred CCcccCCEEEEEEEEeccCCCCCcccccceeeeeeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCC
Confidence 99999999999999974 34688788999999999999999999887765 667788999999999999999999999
Q ss_pred CCCCC--CCChhHHHHHHHhhhccccchhhhhhhcccchhhhhccccccccc
Q 017717 252 PEDDE--DIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE 301 (367)
Q Consensus 252 p~~~~--d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d~ 301 (367)
|+.++ +++++..+++++.|+.||+||++||+.|||+||.||||+++++++
T Consensus 247 p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd~IiP~av~yftGea~e~e~ 298 (359)
T 3fs3_A 247 PNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYYLGIIIESES 298 (359)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC-----
T ss_pred CCcccccccchhhhHHHHHHHHHhHHHHHHHHhceecChHHhhCCccccccc
Confidence 97654 234455678999999999999999999999999999999998864
No 3
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=100.00 E-value=2.7e-59 Score=437.16 Aligned_cols=208 Identities=34% Similarity=0.643 Sum_probs=160.8
Q ss_pred hcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhhh
Q 017717 36 LAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEE 115 (367)
Q Consensus 36 l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~ 115 (367)
..|.+.+.+...+++++++|.+|+.||.+++.|+++|++++++||++|+++++|||++|++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII----------------- 75 (225)
T 2e50_A 13 LNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELI----------------- 75 (225)
T ss_dssp TTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----------------
Confidence 344445678899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCcchHHHHhcchhhhcccchhhHHhhccccccEEEEeCCC-CceEEEEEeCCCCCccCceEEEEEEecCCC
Q 017717 116 DKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMIDED 194 (367)
Q Consensus 116 ~~~~~~kgIP~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~~~ed~-~gF~L~F~F~~NpYF~N~vLtK~y~~~~~~ 194 (367)
+|||+||++||+||+.|+.+|+++|++||+||+||+|++++++ .||+|+|+|.+||||+|++|||+|+|...|
T Consensus 76 ------~~IP~FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g 149 (225)
T 2e50_A 76 ------AKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESG 149 (225)
T ss_dssp ------TTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-----
T ss_pred ------hccccHHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCC
Confidence 7999999999999999999999999999999999999998764 599999999999999999999999998887
Q ss_pred CcceecceeeeeeecCCCCCchhhhhcCCCCCCCCCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccc
Q 017717 195 EPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDY 274 (367)
Q Consensus 195 ~p~~~~~~gt~I~Wk~GknlT~k~~kKk~kkg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~ 274 (367)
+| +++||+|+||+|||||+++++|++|+|++ |+ .++++|||+||+++..|+ .+
T Consensus 150 ~~---~s~~t~I~Wk~gkd~t~~~~~kk~~~~~~--r~---~~~~~SFF~fF~~~~~~~-------------------~~ 202 (225)
T 2e50_A 150 DP---SSKSTEIKWKSGKDMTKRSSQTQNKASRK--RQ---HEEPESFFTWFTDHSDAG-------------------AD 202 (225)
T ss_dssp -----CEEECCCCBCSSCCC---------------------------CGGGGC-------------------------CH
T ss_pred Cc---ccCCCcceecCCCCccchhhhhcccccCc--cc---CCCCCCcceecCCCCCCc-------------------hh
Confidence 76 68999999999999999987766655433 22 346899999999986552 24
Q ss_pred cchhhhhhhcccchhhhhc
Q 017717 275 DIGSTIRDKIIPHAVSWFT 293 (367)
Q Consensus 275 eig~~I~d~IiP~AV~yft 293 (367)
+||++|+++|||+||.|||
T Consensus 203 eige~ikd~i~P~av~yy~ 221 (225)
T 2e50_A 203 ELGEVIKDDIWPNPLQYYL 221 (225)
T ss_dssp HHHHHHHHTTTTCSHHHHC
T ss_pred HHHHHHHhCccccHHHHhc
Confidence 7999999999999999998
No 4
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=100.00 E-value=3.3e-60 Score=452.93 Aligned_cols=203 Identities=18% Similarity=0.299 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhhhhhhhhccCCCcchHHHHhcc
Q 017717 56 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNN 135 (367)
Q Consensus 56 ~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltal~N~ 135 (367)
..|+.++.++..|+++|.++.++|+++|+++|+|||++|++|| +|||+||+|||+||
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII-----------------------~~IP~FWltal~n~ 65 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYI-----------------------DEIAEFWKIVLSQH 65 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------TTCTTHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------------hcchhHHHHHHHcC
Confidence 5688899999999999999999999999999999999999999 79999999999999
Q ss_pred hhhhcccchhhHHhhccccccEEEEe------CCCCceEEEEEeCC-CCCccCceEEEEEEecCC--C-Ccceecceeee
Q 017717 136 DVLSEEITERDEGALKFLKDIKWFRI------DDPKGFKLEFYFDP-NPYFKNSVLTKTYHMIDE--D-EPILEKAIGTE 205 (367)
Q Consensus 136 ~~l~~~I~e~De~iLk~L~DI~v~~~------ed~~gF~L~F~F~~-NpYF~N~vLtK~y~~~~~--~-~p~~~~~~gt~ 205 (367)
+.|+.+|+++|++||+||+||+|+++ +.++||+|+|+|.+ ||||+|++|||+|+|... + .+.+.+|+||+
T Consensus 66 ~~l~~~I~e~De~iL~~L~dI~v~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~ 145 (264)
T 2zd7_A 66 VSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVP 145 (264)
T ss_dssp TTGGGGSCGGGHHHHTTEEEEEEEEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCC
T ss_pred hHHHhhcCHhhHHHHHhcCceEEEEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecc
Confidence 99999999999999999999999996 46789999999999 999999999999999864 2 24456899999
Q ss_pred eeecCCC-CCchhhhhcCC-CCCCCCCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhh
Q 017717 206 IEWYPGK-CLTQKLLKKKP-KKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDK 283 (367)
Q Consensus 206 I~Wk~Gk-nlT~k~~kKk~-kkg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~ 283 (367)
|+||+|+ ++|+++++||+ ++|++++| +.+.|||+||+++.+|... .+..+|+||++|++.
T Consensus 146 I~WK~g~~~~~~~~~~kk~~~~~~~~~r-----~~~~SFF~fF~~~~~~~~~-------------~~~~d~eig~~Ikd~ 207 (264)
T 2zd7_A 146 IEWPQSYDSINPDLIKDKRSPEGKKKYR-----QGMKTIFGWFRWTGLKPGK-------------EFPHGDSLASLFSEE 207 (264)
T ss_dssp CCCCGGGGGGCTTTCSCSSSHHHHHHHH-----HHHTSHHHHTTCCSSSTTS-------------SSTTHHHHHHHHHHT
T ss_pred cccCCCccccchhhhhhccccccccccC-----CCCCCcceecCCCCCCccc-------------cccCchhHHHHHHhh
Confidence 9999965 66777766543 23333222 2457999999999877432 245688999999999
Q ss_pred cccchhhhhccccccc
Q 017717 284 IIPHAVSWFTGEAIQE 299 (367)
Q Consensus 284 IiP~AV~yftGea~~~ 299 (367)
|||+||.||||++.+.
T Consensus 208 I~P~al~yf~g~~~d~ 223 (264)
T 2zd7_A 208 IYPFCVKYYAEAQRDL 223 (264)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hccCHHHHhccccccc
Confidence 9999999999998764
No 5
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=100.00 E-value=2.4e-55 Score=401.98 Aligned_cols=188 Identities=21% Similarity=0.442 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhhhhhhhhccCCCcchHHHHhc
Q 017717 55 VEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKN 134 (367)
Q Consensus 55 v~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltal~N 134 (367)
+.+|+.||.+++.|++++.+++++||+||+++++|||++|++|| +|||+||++||+|
T Consensus 2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI-----------------------~~IP~FW~t~l~n 58 (193)
T 3kyp_A 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEII-----------------------QKIPGFWANTLRK 58 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HTSTTTTHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh-----------------------cCCccHHHHHHHc
Confidence 47899999999999999999999999999999999999999999 6999999999999
Q ss_pred chhhhcccchhhHHhhccccccEEEEeC-CCCceEEEEEeCC--CCCccCceEEEEEEecCCCCcceecceeeeeeecCC
Q 017717 135 NDVLSEEITERDEGALKFLKDIKWFRID-DPKGFKLEFYFDP--NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPG 211 (367)
Q Consensus 135 ~~~l~~~I~e~De~iLk~L~DI~v~~~e-d~~gF~L~F~F~~--NpYF~N~vLtK~y~~~~~~~p~~~~~~gt~I~Wk~G 211 (367)
|+.++.++ ++|++||+||+||+|++.. .+.||+|+|+|++ ||||+|++|||+|++..+|.++ ++||+|+||+|
T Consensus 59 ~~~ls~i~-~~De~~L~~L~di~v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~~g~~~---~~~t~I~Wk~g 134 (193)
T 3kyp_A 59 HPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQEKV---VECTRIKWKEG 134 (193)
T ss_dssp SSSSTTSS-CHHHHTTCCCCEECCBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC----CC---CCCCCCCCCSS
T ss_pred CchHHHHH-HhhHHHHcCcceEEEEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcCCCCee---eccceeeeecC
Confidence 99999865 7999999999999999864 4569999999998 8999999999999998877664 67999999999
Q ss_pred CCCchhhhhcCCCCCCCCCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhcccchhhh
Q 017717 212 KCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSW 291 (367)
Q Consensus 212 knlT~k~~kKk~kkg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~y 291 (367)
||||+++.+|++ ++++++++.||||||+++..|+ +++||++|++.|||+||.|
T Consensus 135 k~~t~~~~~kr~--------~~~~~~~~~SFF~wF~~~~~~~-------------------~~eige~ikd~i~P~~l~y 187 (193)
T 3kyp_A 135 KNPIAAVTHNRS--------DLDNEIPKWSIFEWFTTDELQD-------------------KPDVGELIRREIWHNPLSY 187 (193)
T ss_dssp CCCCC----------------------CCCTTTTCCSSCCTT-------------------TTCTTHHHHTTTTTCHHHH
T ss_pred CCcchhhhhccc--------cccccCCcchHhhhcCCCCcCC-------------------chHHHHHHHhCeeeCHHHH
Confidence 999987654321 2455678999999999987653 3589999999999999999
Q ss_pred hcccc
Q 017717 292 FTGEA 296 (367)
Q Consensus 292 ftGea 296 (367)
|||+.
T Consensus 188 y~ge~ 192 (193)
T 3kyp_A 188 YLGLE 192 (193)
T ss_dssp HC---
T ss_pred hCCCC
Confidence 99974
No 6
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=97.77 E-value=1.3e-06 Score=87.96 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=51.5
Q ss_pred cccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhcccchhhhhccccccccccccC
Q 017717 237 EECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELD 305 (367)
Q Consensus 237 ~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d~~~d~ 305 (367)
++...--+||+++++|..+. +++ +++..+.++.-++..+.|+..|.-+.|++.+-+++++....++
T Consensus 304 ~k~v~~~SFFnfFspp~~p~--~de-de~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~~~e~ 369 (417)
T 2ayu_A 304 EKITPIESFFNFFDPPKIQN--EDQ-DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEF 369 (417)
T ss_dssp EEEEECCCGGGGGSCSCSCC--CTT-SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHHH
T ss_pred ccCCCCCCceeecCCCCCCC--ccc-cccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccccccc
Confidence 44566889999999997653 332 3445566777788899999999999999999999998755443
No 7
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=95.12 E-value=0.0027 Score=60.18 Aligned_cols=48 Identities=4% Similarity=0.037 Sum_probs=36.9
Q ss_pred ccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhcccchhhhhccccccccc
Q 017717 240 ESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE 301 (367)
Q Consensus 240 eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d~ 301 (367)
..--+||+++..|..+ -...+..+..|...|.-..+++.+-++++...
T Consensus 174 ~~~~SFF~fF~~~~~~--------------~~~~~~~d~eig~~Ikd~I~P~al~yf~g~~~ 221 (264)
T 2zd7_A 174 QGMKTIFGWFRWTGLK--------------PGKEFPHGDSLASLFSEEIYPFCVKYYAEAQR 221 (264)
T ss_dssp HHHTSHHHHTTCCSSS--------------TTSSSTTHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCCCcceecCCCCCC--------------ccccccCchhHHHHHHhhhccCHHHHhccccc
Confidence 4567999999876421 11236678999999999999999999998753
No 8
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=92.42 E-value=0.48 Score=33.83 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=36.8
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017717 41 SDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (367)
Q Consensus 41 ~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~k 93 (367)
-+++.+|+. ..|+.....|...+.+|+.+|...|..+.+||.+.
T Consensus 4 f~fLk~ls~---------eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldA 47 (51)
T 2jo8_A 4 YEFLKSWTV---------EDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDA 47 (51)
T ss_dssp CGGGGGSCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhCCH---------HHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 357777774 55677778889999999999999999999999864
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=92.16 E-value=0.032 Score=53.52 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=4.2
Q ss_pred HHHHhcchhh
Q 017717 129 LTAMKNNDVL 138 (367)
Q Consensus 129 ltal~N~~~l 138 (367)
..+|.+++.|
T Consensus 180 ~~~l~~~~~L 189 (386)
T 2ca6_A 180 AKTFQSHRLL 189 (386)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCCCc
Confidence 3444444433
No 10
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=87.57 E-value=0.12 Score=50.94 Aligned_cols=69 Identities=7% Similarity=-0.094 Sum_probs=43.4
Q ss_pred ccccccccccccccccCCCCCCCCCChh-HHHHHHHhhhccccchhhhhhhcccchhhhhcccccccccc
Q 017717 234 TKTEECESFFNFFNPPQVPEDDEDIDED-TAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEI 302 (367)
Q Consensus 234 ~k~~~~eSFFnFF~~~~~p~~~~d~Ded-~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d~~ 302 (367)
..+++...--+||+++.+|..+...+.+ .+++..+.++.-+++.+.|+..|..+.|++.+-++++.+..
T Consensus 226 R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd~IiP~av~yftGea~e 295 (359)
T 3fs3_A 226 KTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYYLGIIIE 295 (359)
T ss_dssp --------CCCGGGGSCCBCC------------CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC--
T ss_pred eeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHhceecChHHhhCCcccc
Confidence 3345667899999999999888653311 12333456777788999999999999999999999999753
No 11
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=73.01 E-value=0.72 Score=44.87 Aligned_cols=6 Identities=0% Similarity=0.102 Sum_probs=2.2
Q ss_pred cccccc
Q 017717 241 SFFNFF 246 (367)
Q Consensus 241 SFFnFF 246 (367)
|.-+.+
T Consensus 243 sL~~il 248 (335)
T 4fp9_B 243 LLKDIL 248 (335)
T ss_dssp CHHHHT
T ss_pred cHHHHH
Confidence 333333
No 12
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=67.95 E-value=17 Score=31.75 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhh
Q 017717 51 VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (367)
Q Consensus 51 v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~ 99 (367)
+-..+..|..|+.++..+++....++.++..+|.....||-.+...+-.
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~ 66 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELED 66 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999999999999999998888774
No 13
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=48.83 E-value=38 Score=26.96 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=25.0
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 42 DVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAA 78 (367)
Q Consensus 42 ~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~ 78 (367)
+-..+|||+.|+ +.||.++..|+.++.++...
T Consensus 6 ~d~s~LPpeqRk-----kkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 6 EDFSHLPPEQQR-----KRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp SCSSSSCHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 345899999874 67888888888888777665
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.61 E-value=99 Score=23.87 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=26.1
Q ss_pred CchhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 72 (367)
Q Consensus 40 ~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f 72 (367)
+-+.++.|..+|+..|..+.-||.++..|..+-
T Consensus 4 S~ElleqLE~KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888998888888888886654
No 15
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=36.82 E-value=13 Score=31.56 Aligned_cols=8 Identities=25% Similarity=0.829 Sum_probs=4.1
Q ss_pred hcccchhh
Q 017717 283 KIIPHAVS 290 (367)
Q Consensus 283 ~IiP~AV~ 290 (367)
.|+|+-+.
T Consensus 94 divP~ki~ 101 (140)
T 2byk_A 94 QIVPQKIR 101 (140)
T ss_dssp TTSCSCC-
T ss_pred ccccchhh
Confidence 56665554
No 16
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=35.99 E-value=45 Score=26.25 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=24.2
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 42 DVLEKLTPAVRKRVEVLREIQSEHDELEAK 71 (367)
Q Consensus 42 ~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~ 71 (367)
+.+++||.++++.+.-|+.+-.++..+..+
T Consensus 11 d~ie~LP~El~r~~~~irelD~~~~~~~~~ 40 (104)
T 4afl_A 11 DSIENLPFELQRNFQLMRDLDQRTEDLKAE 40 (104)
T ss_dssp HSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999888887766544
No 17
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=35.32 E-value=7.9 Score=33.29 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred hcccchhhhh
Q 017717 283 KIIPHAVSWF 292 (367)
Q Consensus 283 ~IiP~AV~yf 292 (367)
.||.-+++|-
T Consensus 12 dl~~s~~~~~ 21 (146)
T 3cx5_F 12 QLKITVVPVV 21 (146)
T ss_dssp ----------
T ss_pred HHHHHcCchh
Confidence 3444444443
No 18
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=32.34 E-value=77 Score=29.86 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=34.0
Q ss_pred hhccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017717 43 VLEKLTPA-----VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (367)
Q Consensus 43 ~~~~Lp~~-----v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~k 93 (367)
++.+++|. ++.||...+.+..++. .|.+|+..+|..|.+.++-|-.+
T Consensus 35 iL~sk~P~qa~~iL~~Rl~~~k~i~keL~----~f~kERa~IEe~YakqLrkLakk 86 (287)
T 3g9g_A 35 ILTTKSPYEATETIRIRLSQVKLLNKDFY----LLFKELANLKRNYAQQLRKIIAE 86 (287)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566665 4566666666655554 58899999999999888777766
No 19
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.09 E-value=1.2e+02 Score=23.73 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017717 45 EKLTPAVRKRVEVLREIQSEHDELEAKF 72 (367)
Q Consensus 45 ~~Lp~~v~~rv~aLk~lQ~e~~~le~~f 72 (367)
.++|+.++..+..+..+|.++..+..+.
T Consensus 2 ~~~~~e~Q~~i~~~~~l~~~~~~l~~q~ 29 (117)
T 2zqm_A 2 QNIPPQVQAMLGQLESYQQQLQLVVQQK 29 (117)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999887654
No 20
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.92 E-value=1.8e+02 Score=24.93 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=31.4
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhchhHHHH
Q 017717 44 LEKLTPAVRKRVEVLREIQSEHDELEAKF---FEERAALEAKYQKLYQPMYTKR 94 (367)
Q Consensus 44 ~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f---~~E~~~LE~ky~k~~~Ply~kR 94 (367)
|..|-..++.+-..+..||.++..|+.++ ..++..|+.++..+..-...+.
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566667777777776665 3456666667766665555443
No 21
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=26.65 E-value=70 Score=23.36 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 017717 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQP 89 (367)
Q Consensus 47 Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~P 89 (367)
++.....||+.|...+.. ..|..+=..|..+|+++|-+.++-
T Consensus 2 m~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~ 43 (60)
T 3bhp_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRS 43 (60)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455667789999888876 555556667788888988665543
No 22
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=24.72 E-value=44 Score=25.17 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=18.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHH
Q 017717 43 VLEKLTPAVRKRVEVLREIQSEH 65 (367)
Q Consensus 43 ~~~~Lp~~v~~rv~aLk~lQ~e~ 65 (367)
+|+.||+.++.+|.+|-.-.-..
T Consensus 8 wL~~LP~~Lq~kV~aIV~~~PsS 30 (70)
T 2lh0_A 8 FLDELPESLSRKIGTVVRVLPSS 30 (70)
T ss_dssp GGGGSCHHHHHHHHHHHTTCTTH
T ss_pred HHHhCCHHHHHHHHHHHHhCccH
Confidence 89999999999998876544433
No 23
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=22.59 E-value=18 Score=30.70 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=6.2
Q ss_pred ccccccccccc
Q 017717 237 EECESFFNFFN 247 (367)
Q Consensus 237 ~~~eSFFnFF~ 247 (367)
+....+|.|..
T Consensus 83 V~~~e~~dFL~ 93 (140)
T 2byk_A 83 VNKNKNLEFLL 93 (140)
T ss_dssp HHTCSTTGGGT
T ss_pred HhcCchhhhHh
Confidence 34445666666
No 24
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=20.72 E-value=78 Score=22.63 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017717 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQ 88 (367)
Q Consensus 47 Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~ 88 (367)
+......||+.|...+.. ..|...=..|..+|.+.|-..++
T Consensus 2 m~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR 42 (54)
T 2jvd_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFR 42 (54)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 455667789999888876 45555556677888888865443
No 25
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.52 E-value=3.9e+02 Score=22.56 Aligned_cols=36 Identities=11% Similarity=0.373 Sum_probs=24.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHhchhHHHHHHHhhc
Q 017717 65 HDELEAKFFE---ERAALEAKYQKLYQPMYTKRYEIVNG 100 (367)
Q Consensus 65 ~~~le~~f~~---E~~~LE~ky~k~~~Ply~kR~eII~G 100 (367)
+..|-.+|.. +...++..|.+.++--..++..|+++
T Consensus 86 ~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~ 124 (196)
T 1fio_A 86 AENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQP 124 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4444444433 45667788888888888877788854
No 26
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=20.28 E-value=77 Score=22.19 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=19.6
Q ss_pred cCCCchhhccCCHHHHHHHHHHHH
Q 017717 37 AGQHSDVLEKLTPAVRKRVEVLRE 60 (367)
Q Consensus 37 ~~~~~~~~~~Lp~~v~~rv~aLk~ 60 (367)
-..+.+.|..||+..|..|-.|+.
T Consensus 17 LsLt~eQI~~LPp~qR~qI~~LR~ 40 (49)
T 2j8p_A 17 LQLTADQIAMLPPEQRQSILILKE 40 (49)
T ss_dssp HTSCHHHHHTSCHHHHTHHHHHHH
T ss_pred HhCCHHHHHhCCHHHHHHHHHHHH
Confidence 344577899999999999988874
Done!