Query 017718
Match_columns 367
No_of_seqs 273 out of 2052
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:49:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 8.8E-91 1.9E-95 641.4 29.9 351 4-354 1-355 (363)
2 PLN02493 probable peroxisomal 100.0 1.6E-83 3.6E-88 625.1 35.2 354 3-356 2-358 (367)
3 PLN02535 glycolate oxidase 100.0 1.1E-80 2.3E-85 606.2 34.0 354 2-358 3-359 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 1.6E-80 3.5E-85 607.5 34.5 351 3-354 2-377 (381)
5 TIGR02708 L_lactate_ox L-lacta 100.0 1E-79 2.2E-84 599.3 34.8 347 2-355 11-361 (367)
6 cd04736 MDH_FMN Mandelate dehy 100.0 1.4E-79 2.9E-84 597.2 34.1 339 8-349 1-361 (361)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.1E-78 2.4E-83 595.5 35.1 348 4-352 18-383 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 4.5E-78 9.7E-83 587.0 34.4 344 3-352 4-351 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 2.7E-76 5.8E-81 577.9 32.9 340 14-353 1-356 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 1.4E-74 3E-79 562.6 35.5 335 8-349 1-343 (344)
11 PLN02979 glycolate oxidase 100.0 1.9E-69 4.1E-74 522.4 32.7 313 45-357 43-358 (366)
12 COG1304 idi Isopentenyl diphos 100.0 3.3E-64 7.2E-69 489.8 24.6 346 7-357 1-353 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 6.6E-59 1.4E-63 447.4 34.1 296 8-349 1-299 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 6.4E-39 1.4E-43 311.7 26.4 267 38-349 17-326 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 2E-38 4.3E-43 310.9 25.9 276 40-356 27-340 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 2.3E-37 4.9E-42 301.7 25.1 273 41-354 21-331 (333)
17 PRK05458 guanosine 5'-monophos 100.0 1.2E-27 2.7E-32 230.6 26.5 256 42-354 6-315 (326)
18 TIGR01306 GMP_reduct_2 guanosi 100.0 2.8E-27 6E-32 227.3 24.2 256 42-354 3-312 (321)
19 TIGR01305 GMP_reduct_1 guanosi 99.9 4.7E-25 1E-29 210.4 23.8 255 42-350 9-329 (343)
20 cd02808 GltS_FMN Glutamate syn 99.9 1.7E-24 3.6E-29 215.5 25.5 270 58-353 59-390 (392)
21 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 2.7E-25 6E-30 217.8 19.4 287 41-353 13-368 (369)
22 PRK08649 inosine 5-monophospha 99.9 1.6E-24 3.5E-29 212.9 23.9 284 42-354 17-367 (368)
23 cd00381 IMPDH IMPDH: The catal 99.9 4.3E-23 9.3E-28 200.6 23.1 255 42-352 3-321 (325)
24 TIGR01037 pyrD_sub1_fam dihydr 99.9 1.3E-22 2.9E-27 195.4 23.9 235 61-350 1-298 (300)
25 cd04739 DHOD_like Dihydroorota 99.9 6.4E-22 1.4E-26 192.6 27.0 238 60-350 1-302 (325)
26 PRK07259 dihydroorotate dehydr 99.9 1E-21 2.2E-26 189.4 26.3 236 60-350 1-298 (301)
27 COG0042 tRNA-dihydrouridine sy 99.9 2.3E-22 5E-27 195.1 20.1 247 64-353 3-286 (323)
28 PRK10415 tRNA-dihydrouridine s 99.9 4.4E-22 9.6E-27 193.4 21.4 245 64-352 2-284 (321)
29 PF00478 IMPDH: IMP dehydrogen 99.9 8.4E-22 1.8E-26 191.2 23.1 256 42-351 4-336 (352)
30 PRK06843 inosine 5-monophospha 99.9 1.7E-21 3.7E-26 192.5 25.2 270 42-366 11-398 (404)
31 PRK07565 dihydroorotate dehydr 99.9 2.5E-21 5.4E-26 189.3 26.0 237 60-351 2-305 (334)
32 cd04740 DHOD_1B_like Dihydroor 99.9 6.9E-21 1.5E-25 183.1 26.2 234 62-350 1-295 (296)
33 PRK10550 tRNA-dihydrouridine s 99.9 9E-21 1.9E-25 183.3 23.2 220 72-333 1-258 (312)
34 PLN02495 oxidoreductase, actin 99.9 1.2E-20 2.6E-25 186.1 24.5 248 57-352 7-337 (385)
35 TIGR00742 yjbN tRNA dihydrouri 99.9 4.2E-21 9.1E-26 185.9 20.6 234 73-352 2-279 (318)
36 TIGR00737 nifR3_yhdG putative 99.9 1.1E-20 2.5E-25 183.6 23.3 243 66-350 2-280 (319)
37 cd02940 DHPD_FMN Dihydropyrimi 99.9 9.2E-21 2E-25 182.6 21.3 224 60-331 1-298 (299)
38 PRK05096 guanosine 5'-monophos 99.9 1.8E-20 3.8E-25 179.1 22.7 259 42-354 10-336 (346)
39 PLN02826 dihydroorotate dehydr 99.9 1.1E-19 2.4E-24 180.8 28.3 123 221-351 261-407 (409)
40 COG0167 PyrD Dihydroorotate de 99.9 4.1E-20 8.9E-25 176.6 22.7 173 134-352 107-308 (310)
41 PRK08318 dihydropyrimidine deh 99.9 4.5E-20 9.8E-25 185.8 23.1 245 59-352 2-320 (420)
42 PRK02506 dihydroorotate dehydr 99.8 2.3E-19 5E-24 173.6 23.3 238 60-350 1-306 (310)
43 PRK05286 dihydroorotate dehydr 99.8 2.1E-18 4.5E-23 169.3 25.5 229 56-340 44-344 (344)
44 PF01207 Dus: Dihydrouridine s 99.8 4E-20 8.7E-25 178.8 12.6 237 75-353 1-273 (309)
45 PTZ00314 inosine-5'-monophosph 99.8 2.6E-18 5.6E-23 175.6 25.9 134 216-349 275-466 (495)
46 PRK07107 inosine 5-monophospha 99.8 1E-18 2.2E-23 178.5 22.7 152 215-366 275-489 (502)
47 PRK11815 tRNA-dihydrouridine s 99.8 1.7E-18 3.7E-23 169.1 22.0 240 68-351 7-288 (333)
48 PLN02274 inosine-5'-monophosph 99.8 6.7E-18 1.5E-22 172.7 26.0 136 213-350 276-473 (505)
49 PF01645 Glu_synthase: Conserv 99.8 6.4E-18 1.4E-22 165.3 20.9 251 68-342 62-368 (368)
50 cd04741 DHOD_1A_like Dihydroor 99.8 1.5E-17 3.3E-22 159.9 23.2 220 63-336 1-294 (294)
51 PRK05567 inosine 5'-monophosph 99.8 1.7E-17 3.7E-22 169.8 24.6 136 215-350 261-455 (486)
52 TIGR01302 IMP_dehydrog inosine 99.8 9.1E-18 2E-22 170.2 21.8 133 216-348 258-449 (450)
53 cd04738 DHOD_2_like Dihydrooro 99.8 1.7E-17 3.6E-22 161.8 22.8 245 32-331 9-326 (327)
54 TIGR01303 IMP_DH_rel_1 IMP deh 99.8 3.9E-17 8.4E-22 165.9 23.3 135 216-350 259-456 (475)
55 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 5E-17 1.1E-21 155.7 22.3 208 63-319 1-281 (289)
56 cd02911 arch_FMN Archeal FMN-b 99.7 4.4E-17 9.6E-22 151.5 17.0 185 73-308 1-222 (233)
57 cd02801 DUS_like_FMN Dihydrour 99.7 8.4E-17 1.8E-21 148.9 17.9 197 73-311 1-218 (231)
58 COG0069 GltB Glutamate synthas 99.7 1.3E-16 2.9E-21 159.3 18.9 259 68-351 163-477 (485)
59 KOG1436 Dihydroorotate dehydro 99.7 1.5E-16 3.2E-21 149.0 16.9 121 222-350 252-396 (398)
60 PF01180 DHO_dh: Dihydroorotat 99.7 2.2E-16 4.7E-21 151.9 18.0 113 216-336 156-295 (295)
61 KOG2335 tRNA-dihydrouridine sy 99.7 6.2E-16 1.3E-20 148.2 20.1 202 66-311 12-238 (358)
62 TIGR01036 pyrD_sub2 dihydrooro 99.7 2.5E-15 5.3E-20 146.9 22.8 108 216-331 197-334 (335)
63 PRK07807 inosine 5-monophospha 99.7 6.2E-15 1.3E-19 150.0 23.4 135 216-350 261-458 (479)
64 PRK11750 gltB glutamate syntha 99.7 4.6E-15 9.9E-20 163.5 21.1 252 72-347 859-1165(1485)
65 TIGR03151 enACPred_II putative 99.7 1.2E-14 2.6E-19 140.5 20.4 184 64-314 6-198 (307)
66 PF03060 NMO: Nitronate monoox 99.6 4.4E-14 9.6E-19 138.0 19.8 93 216-313 131-226 (330)
67 TIGR00736 nifR3_rel_arch TIM-b 99.6 1.4E-14 3.1E-19 133.9 15.0 149 123-311 68-225 (231)
68 KOG2550 IMP dehydrogenase/GMP 99.5 9.9E-14 2.2E-18 134.1 12.1 135 216-350 285-476 (503)
69 cd04730 NPD_like 2-Nitropropan 99.5 2.3E-12 5E-17 119.6 20.4 188 71-319 2-198 (236)
70 cd04743 NPD_PKS 2-Nitropropane 99.4 7.6E-12 1.6E-16 120.6 18.6 182 71-314 2-210 (320)
71 COG2070 Dioxygenases related t 99.4 3.5E-12 7.6E-17 124.5 15.5 97 215-315 121-222 (336)
72 PRK13523 NADPH dehydrogenase N 99.3 2E-10 4.4E-15 112.5 18.9 222 62-311 6-310 (337)
73 cd04742 NPD_FabD 2-Nitropropan 99.3 3.6E-10 7.8E-15 112.6 20.5 215 70-312 12-254 (418)
74 KOG2333 Uncharacterized conser 99.3 1.2E-10 2.6E-15 114.9 16.1 235 70-342 263-529 (614)
75 cd04722 TIM_phosphate_binding 99.3 4.3E-10 9.4E-15 99.8 18.0 184 74-307 1-200 (200)
76 TIGR02814 pfaD_fam PfaD family 99.2 1.3E-09 2.9E-14 109.2 21.6 221 64-313 13-260 (444)
77 cd02803 OYE_like_FMN_family Ol 99.2 5.9E-10 1.3E-14 108.6 17.5 95 215-311 199-316 (327)
78 KOG1799 Dihydropyrimidine dehy 99.2 5.4E-11 1.2E-15 113.1 8.7 255 49-353 91-424 (471)
79 cd04734 OYE_like_3_FMN Old yel 99.1 7.1E-09 1.5E-13 101.9 20.8 94 215-311 199-320 (343)
80 cd02932 OYE_YqiM_FMN Old yello 99.1 1.1E-08 2.3E-13 100.4 20.0 95 215-311 212-325 (336)
81 PRK01130 N-acetylmannosamine-6 99.1 1.3E-08 2.7E-13 94.0 18.2 92 216-310 113-206 (221)
82 cd04735 OYE_like_4_FMN Old yel 99.0 1.2E-08 2.7E-13 100.6 17.3 97 215-311 202-318 (353)
83 cd02931 ER_like_FMN Enoate red 99.0 2.7E-08 5.8E-13 99.3 19.6 93 215-311 209-340 (382)
84 cd04729 NanE N-acetylmannosami 99.0 3E-08 6.4E-13 91.4 17.8 93 216-311 117-211 (219)
85 cd04747 OYE_like_5_FMN Old yel 99.0 6.3E-08 1.4E-12 95.7 20.0 93 215-311 202-333 (361)
86 cd02930 DCR_FMN 2,4-dienoyl-Co 98.9 7.5E-08 1.6E-12 95.1 18.2 95 215-311 195-311 (353)
87 PRK08255 salicylyl-CoA 5-hydro 98.9 2.6E-07 5.6E-12 100.1 23.3 94 215-311 609-722 (765)
88 cd02933 OYE_like_FMN Old yello 98.9 3.9E-08 8.3E-13 96.6 15.3 93 215-311 210-319 (338)
89 PF04131 NanE: Putative N-acet 98.9 2.6E-08 5.6E-13 88.6 11.5 90 216-311 87-178 (192)
90 cd04733 OYE_like_2_FMN Old yel 98.8 7.8E-08 1.7E-12 94.4 14.8 92 216-311 208-327 (338)
91 COG1902 NemA NADH:flavin oxido 98.8 1.4E-06 3E-11 86.1 23.1 95 215-311 207-323 (363)
92 cd02929 TMADH_HD_FMN Trimethyl 98.8 9.3E-07 2E-11 87.9 19.9 93 215-311 208-324 (370)
93 cd00331 IGPS Indole-3-glycerol 98.7 2.4E-07 5.3E-12 85.1 14.5 86 222-311 121-206 (217)
94 PRK10605 N-ethylmaleimide redu 98.7 5.9E-06 1.3E-10 81.9 24.4 91 215-311 217-326 (362)
95 cd04727 pdxS PdxS is a subunit 98.7 1.9E-07 4E-12 88.0 12.9 93 216-311 106-230 (283)
96 TIGR00343 pyridoxal 5'-phospha 98.6 3.7E-07 7.9E-12 86.1 12.4 93 216-311 108-233 (287)
97 COG3010 NanE Putative N-acetyl 98.6 4.6E-06 1E-10 74.8 17.7 87 221-310 125-213 (229)
98 PRK13585 1-(5-phosphoribosyl)- 98.6 2.1E-06 4.6E-11 80.1 16.2 76 233-311 152-227 (241)
99 PRK00278 trpC indole-3-glycero 98.6 1.4E-06 3E-11 82.6 14.9 166 138-311 72-245 (260)
100 PRK07695 transcriptional regul 98.6 4.4E-06 9.5E-11 75.9 17.4 92 216-311 88-182 (201)
101 TIGR00262 trpA tryptophan synt 98.6 1.2E-05 2.6E-10 76.0 20.2 49 263-313 186-234 (256)
102 PRK13125 trpA tryptophan synth 98.5 1.6E-05 3.4E-10 74.6 20.0 96 216-313 124-221 (244)
103 PRK04180 pyridoxal biosynthesi 98.5 1.5E-06 3.2E-11 82.2 12.8 93 216-311 115-239 (293)
104 PF00724 Oxidored_FMN: NADH:fl 98.5 1E-05 2.2E-10 79.7 19.0 94 216-311 208-326 (341)
105 PRK09140 2-dehydro-3-deoxy-6-p 98.5 1E-05 2.3E-10 74.0 16.8 170 127-311 13-184 (206)
106 PRK06552 keto-hydroxyglutarate 98.5 8E-06 1.7E-10 75.1 15.9 170 126-311 15-188 (213)
107 PRK14024 phosphoribosyl isomer 98.4 9E-07 2E-11 82.9 9.5 77 233-312 149-228 (241)
108 cd04731 HisF The cyclase subun 98.4 1.5E-06 3.3E-11 81.2 10.4 77 233-312 152-229 (243)
109 PRK01033 imidazole glycerol ph 98.4 8.6E-07 1.9E-11 83.8 8.8 77 233-312 155-232 (258)
110 cd04728 ThiG Thiazole synthase 98.4 1.3E-06 2.7E-11 80.9 9.1 79 229-311 130-209 (248)
111 PRK02083 imidazole glycerol ph 98.4 3.1E-06 6.7E-11 79.7 11.9 77 233-312 156-233 (253)
112 CHL00200 trpA tryptophan synth 98.4 5.9E-05 1.3E-09 71.5 20.3 46 266-313 193-238 (263)
113 PRK00208 thiG thiazole synthas 98.4 1.8E-06 3.9E-11 80.0 9.1 79 229-311 130-209 (250)
114 cd00452 KDPG_aldolase KDPG and 98.4 8.5E-06 1.8E-10 73.5 13.2 168 127-310 7-175 (190)
115 cd04732 HisA HisA. Phosphorib 98.4 2.4E-06 5.2E-11 79.2 9.9 77 233-312 149-225 (234)
116 PRK00748 1-(5-phosphoribosyl)- 98.3 2.4E-06 5.3E-11 79.2 9.1 77 233-312 149-226 (233)
117 KOG2334 tRNA-dihydrouridine sy 98.3 5.3E-06 1.2E-10 81.5 11.6 202 68-311 7-247 (477)
118 TIGR00007 phosphoribosylformim 98.3 2.9E-06 6.3E-11 78.6 9.4 77 233-312 148-224 (230)
119 TIGR03572 WbuZ glycosyl amidat 98.3 3.2E-06 7E-11 78.5 9.5 76 233-311 156-232 (232)
120 PRK13111 trpA tryptophan synth 98.3 5.1E-05 1.1E-09 71.8 17.3 91 221-314 141-236 (258)
121 KOG0399 Glutamate synthase [Am 98.3 2.9E-06 6.2E-11 91.5 9.6 134 217-350 1092-1269(2142)
122 PRK00507 deoxyribose-phosphate 98.3 2E-05 4.3E-10 72.9 13.3 87 216-307 114-209 (221)
123 TIGR00735 hisF imidazoleglycer 98.2 7.6E-06 1.6E-10 77.2 10.2 76 233-311 158-234 (254)
124 cd04731 HisF The cyclase subun 98.2 1.6E-05 3.6E-10 74.3 11.3 76 233-311 30-105 (243)
125 PLN02591 tryptophan synthase 98.1 0.00038 8.3E-09 65.5 19.3 92 220-313 129-225 (250)
126 PRK02083 imidazole glycerol ph 98.1 1.9E-05 4.1E-10 74.4 10.0 76 233-311 33-108 (253)
127 TIGR00735 hisF imidazoleglycer 98.1 2E-05 4.4E-10 74.3 10.1 77 232-311 31-108 (254)
128 PRK07455 keto-hydroxyglutarate 98.1 7.4E-05 1.6E-09 67.3 13.1 86 216-310 99-184 (187)
129 PF00218 IGPS: Indole-3-glycer 98.1 7.3E-05 1.6E-09 70.4 13.4 164 139-311 71-243 (254)
130 COG0107 HisF Imidazoleglycerol 98.1 5.6E-05 1.2E-09 69.1 11.8 64 263-341 187-251 (256)
131 PF05690 ThiG: Thiazole biosyn 98.1 3.3E-05 7.2E-10 71.0 10.2 85 222-310 123-208 (247)
132 PRK00043 thiE thiamine-phospha 98.0 9.9E-05 2.1E-09 67.1 13.3 79 230-310 111-192 (212)
133 PRK13957 indole-3-glycerol-pho 98.0 0.00023 4.9E-09 66.7 15.7 164 140-312 65-236 (247)
134 TIGR01304 IMP_DH_rel_2 IMP deh 98.0 3.5E-05 7.6E-10 76.3 10.2 81 224-307 132-217 (369)
135 TIGR01182 eda Entner-Doudoroff 98.0 0.00013 2.7E-09 66.6 12.6 167 126-310 10-180 (204)
136 COG0134 TrpC Indole-3-glycerol 98.0 0.00024 5.1E-09 66.6 14.7 164 141-311 71-241 (254)
137 cd04724 Tryptophan_synthase_al 98.0 0.0008 1.7E-08 63.1 18.4 80 231-313 140-222 (242)
138 TIGR03128 RuMP_HxlA 3-hexulose 97.9 0.00034 7.4E-09 63.5 14.6 168 89-310 13-190 (206)
139 cd00564 TMP_TenI Thiamine mono 97.9 0.00015 3.2E-09 64.7 11.8 78 231-311 103-183 (196)
140 PRK05848 nicotinate-nucleotide 97.9 0.00011 2.4E-09 70.0 11.2 84 216-310 174-261 (273)
141 cd04732 HisA HisA. Phosphorib 97.9 8.3E-05 1.8E-09 68.9 9.9 76 233-311 32-107 (234)
142 cd00945 Aldolase_Class_I Class 97.9 0.0013 2.9E-08 58.5 17.3 170 89-306 14-201 (201)
143 TIGR00875 fsa_talC_mipB fructo 97.9 0.0035 7.7E-08 57.6 20.2 174 89-315 8-194 (213)
144 PRK07114 keto-hydroxyglutarate 97.9 0.00049 1.1E-08 63.6 14.4 169 126-310 17-192 (222)
145 PRK00748 1-(5-phosphoribosyl)- 97.8 0.00018 3.9E-09 66.6 11.6 76 233-311 33-108 (233)
146 CHL00162 thiG thiamin biosynth 97.8 8.2E-05 1.8E-09 69.1 8.9 86 222-311 137-223 (267)
147 PRK13802 bifunctional indole-3 97.8 0.00048 1E-08 73.4 15.7 164 140-311 74-245 (695)
148 TIGR00126 deoC deoxyribose-pho 97.8 0.00027 5.9E-09 64.9 12.0 67 236-306 138-204 (211)
149 TIGR00078 nadC nicotinate-nucl 97.8 0.00094 2E-08 63.4 16.1 86 213-309 167-253 (265)
150 PLN02411 12-oxophytodienoate r 97.8 0.00092 2E-08 67.0 16.8 94 215-311 223-347 (391)
151 PRK05742 nicotinate-nucleotide 97.8 0.0014 3E-08 62.6 16.9 85 214-310 180-265 (277)
152 PRK08649 inosine 5-monophospha 97.8 0.00012 2.5E-09 72.7 9.5 88 216-307 126-216 (368)
153 COG0214 SNZ1 Pyridoxine biosyn 97.8 0.00021 4.5E-09 65.4 10.1 35 277-311 206-242 (296)
154 cd00956 Transaldolase_FSA Tran 97.8 0.0042 9.2E-08 57.0 18.9 174 89-315 7-194 (211)
155 cd00959 DeoC 2-deoxyribose-5-p 97.8 0.00059 1.3E-08 62.2 13.1 65 236-304 137-201 (203)
156 PRK06806 fructose-bisphosphate 97.7 0.012 2.7E-07 56.3 22.6 109 230-342 152-278 (281)
157 PRK09427 bifunctional indole-3 97.7 0.00076 1.6E-08 68.7 15.0 115 220-348 157-271 (454)
158 TIGR00734 hisAF_rel hisA/hisF 97.7 0.00015 3.1E-09 67.2 8.8 70 236-311 147-218 (221)
159 PRK07226 fructose-bisphosphate 97.7 0.00086 1.9E-08 63.7 14.3 82 219-311 136-236 (267)
160 COG0159 TrpA Tryptophan syntha 97.7 0.0045 9.7E-08 58.4 18.2 81 231-314 158-241 (265)
161 PRK04180 pyridoxal biosynthesi 97.7 0.00081 1.7E-08 63.9 13.1 119 139-304 27-146 (293)
162 TIGR00693 thiE thiamine-phosph 97.7 0.00072 1.6E-08 60.9 12.5 82 228-311 101-185 (196)
163 cd01572 QPRTase Quinolinate ph 97.7 0.0015 3.2E-08 62.2 15.0 87 213-310 171-258 (268)
164 PRK14024 phosphoribosyl isomer 97.7 0.00039 8.4E-09 65.1 10.8 75 233-311 35-109 (241)
165 PRK07428 nicotinate-nucleotide 97.7 0.003 6.6E-08 60.6 16.9 83 216-310 188-275 (288)
166 PRK13587 1-(5-phosphoribosyl)- 97.7 0.00033 7.1E-09 65.4 10.1 74 233-311 151-226 (234)
167 PRK06512 thiamine-phosphate py 97.7 0.0012 2.5E-08 61.2 13.6 95 214-311 100-197 (221)
168 PRK01362 putative translaldola 97.6 0.0087 1.9E-07 55.1 19.1 92 221-315 100-194 (214)
169 cd04726 KGPDC_HPS 3-Keto-L-gul 97.6 0.00053 1.2E-08 61.9 11.0 90 216-310 98-190 (202)
170 PLN02460 indole-3-glycerol-pho 97.6 0.0018 3.9E-08 63.2 15.0 168 140-311 143-322 (338)
171 TIGR01163 rpe ribulose-phospha 97.6 0.0041 8.9E-08 56.3 16.5 76 234-310 117-197 (210)
172 PRK08883 ribulose-phosphate 3- 97.6 0.0033 7.2E-08 58.1 15.9 48 262-310 149-199 (220)
173 PRK12656 fructose-6-phosphate 97.6 0.012 2.6E-07 54.4 19.3 187 89-328 8-213 (222)
174 PF00977 His_biosynth: Histidi 97.6 0.00034 7.3E-09 65.0 9.2 76 233-311 150-225 (229)
175 PRK02615 thiamine-phosphate py 97.6 0.0011 2.3E-08 65.4 12.8 85 224-311 241-327 (347)
176 PRK08385 nicotinate-nucleotide 97.6 0.0043 9.3E-08 59.3 16.2 147 137-310 106-263 (278)
177 PRK12653 fructose-6-phosphate 97.5 0.022 4.8E-07 52.6 20.4 174 89-315 8-196 (220)
178 cd00405 PRAI Phosphoribosylant 97.5 0.006 1.3E-07 55.4 16.5 90 216-310 90-185 (203)
179 PF00290 Trp_syntA: Tryptophan 97.5 0.01 2.3E-07 56.1 18.5 152 115-317 79-237 (259)
180 cd00958 DhnA Class I fructose- 97.5 0.002 4.4E-08 59.8 13.7 65 236-311 149-219 (235)
181 PLN02334 ribulose-phosphate 3- 97.5 0.001 2.2E-08 61.7 11.6 96 233-336 128-226 (229)
182 PRK12655 fructose-6-phosphate 97.5 0.022 4.8E-07 52.6 20.2 187 89-328 8-211 (220)
183 cd01573 modD_like ModD; Quinol 97.5 0.0037 8.1E-08 59.6 15.5 83 216-309 176-261 (272)
184 TIGR03572 WbuZ glycosyl amidat 97.5 0.00066 1.4E-08 63.0 10.0 75 233-310 33-107 (232)
185 PRK13585 1-(5-phosphoribosyl)- 97.5 0.00054 1.2E-08 63.8 9.4 75 233-310 35-109 (241)
186 cd04723 HisA_HisF Phosphoribos 97.5 0.0005 1.1E-08 64.1 9.0 75 234-312 150-224 (233)
187 PRK07028 bifunctional hexulose 97.5 0.00093 2E-08 67.8 11.4 91 216-311 102-195 (430)
188 PRK06015 keto-hydroxyglutarate 97.5 0.0038 8.2E-08 56.9 14.1 118 126-306 6-124 (201)
189 PF01791 DeoC: DeoC/LacD famil 97.4 0.00098 2.1E-08 62.1 10.3 87 220-310 123-234 (236)
190 PRK08072 nicotinate-nucleotide 97.4 0.0073 1.6E-07 57.8 16.2 84 216-310 180-264 (277)
191 PRK11840 bifunctional sulfur c 97.4 0.00083 1.8E-08 64.9 9.8 86 222-311 197-283 (326)
192 COG2022 ThiG Uncharacterized e 97.4 0.0006 1.3E-08 62.5 8.2 86 222-311 130-216 (262)
193 PRK04128 1-(5-phosphoribosyl)- 97.4 0.00073 1.6E-08 62.8 8.9 73 234-310 34-106 (228)
194 COG0106 HisA Phosphoribosylfor 97.4 0.00098 2.1E-08 61.8 9.5 73 234-311 151-226 (241)
195 COG0107 HisF Imidazoleglycerol 97.4 0.0011 2.3E-08 60.9 9.5 76 233-311 33-108 (256)
196 PRK14114 1-(5-phosphoribosyl)- 97.4 0.00076 1.6E-08 63.2 8.9 73 234-311 148-228 (241)
197 cd01568 QPRTase_NadC Quinolina 97.4 0.0073 1.6E-07 57.5 15.8 85 214-309 171-258 (269)
198 PRK06015 keto-hydroxyglutarate 97.4 0.015 3.2E-07 53.0 16.9 155 90-310 18-176 (201)
199 TIGR01859 fruc_bis_ald_ fructo 97.4 0.046 1E-06 52.4 21.1 108 231-342 153-279 (282)
200 TIGR00007 phosphoribosylformim 97.4 0.0012 2.5E-08 61.1 9.9 75 233-310 31-105 (230)
201 TIGR02129 hisA_euk phosphoribo 97.4 0.00067 1.5E-08 63.8 8.2 69 233-311 41-109 (253)
202 PRK13587 1-(5-phosphoribosyl)- 97.4 0.0011 2.4E-08 61.9 9.5 76 232-310 32-109 (234)
203 cd00429 RPE Ribulose-5-phospha 97.4 0.024 5.1E-07 51.2 18.1 77 233-311 118-199 (211)
204 PF02581 TMP-TENI: Thiamine mo 97.4 0.0023 5E-08 57.1 11.2 78 229-309 101-180 (180)
205 PF01081 Aldolase: KDPG and KH 97.4 0.00094 2E-08 60.6 8.6 167 127-311 11-181 (196)
206 COG0352 ThiE Thiamine monophos 97.3 0.007 1.5E-07 55.5 13.9 95 214-311 94-191 (211)
207 TIGR01919 hisA-trpF 1-(5-phosp 97.3 0.0013 2.8E-08 61.7 9.3 73 234-311 153-230 (243)
208 PRK12376 putative translaldola 97.3 0.055 1.2E-06 50.5 19.9 176 89-314 13-207 (236)
209 PRK01033 imidazole glycerol ph 97.3 0.0027 5.8E-08 60.1 11.4 75 233-310 33-107 (258)
210 PRK12290 thiE thiamine-phospha 97.3 0.021 4.5E-07 57.6 18.1 95 216-311 292-397 (437)
211 COG0269 SgbH 3-hexulose-6-phos 97.3 0.0056 1.2E-07 55.9 12.8 196 125-333 4-213 (217)
212 COG0274 DeoC Deoxyribose-phosp 97.3 0.0015 3.3E-08 59.9 8.9 88 216-307 117-213 (228)
213 PTZ00170 D-ribulose-5-phosphat 97.3 0.011 2.4E-07 54.8 14.9 112 215-334 57-223 (228)
214 PRK06801 hypothetical protein; 97.2 0.047 1E-06 52.5 19.3 107 231-342 156-283 (286)
215 PRK04302 triosephosphate isome 97.2 0.0033 7.2E-08 58.1 10.6 89 221-311 113-207 (223)
216 cd04723 HisA_HisF Phosphoribos 97.2 0.0021 4.6E-08 59.8 9.0 74 233-310 38-111 (233)
217 PF00977 His_biosynth: Histidi 97.2 0.0023 5E-08 59.5 9.2 75 234-311 33-107 (229)
218 PRK06559 nicotinate-nucleotide 97.1 0.018 4E-07 55.2 15.2 83 216-310 189-273 (290)
219 PRK04169 geranylgeranylglycery 97.1 0.0029 6.3E-08 58.9 9.5 66 241-311 152-218 (232)
220 PRK05718 keto-hydroxyglutarate 97.1 0.017 3.6E-07 53.2 14.3 118 125-305 16-134 (212)
221 PRK13397 3-deoxy-7-phosphohept 97.1 0.051 1.1E-06 51.1 17.4 200 60-309 3-222 (250)
222 cd02812 PcrB_like PcrB_like pr 97.1 0.0029 6.3E-08 58.3 8.9 69 236-311 141-209 (219)
223 PRK09016 quinolinate phosphori 97.0 0.027 5.9E-07 54.2 15.5 85 214-310 199-284 (296)
224 PRK13307 bifunctional formalde 97.0 0.035 7.6E-07 55.6 16.8 143 113-310 216-362 (391)
225 TIGR01769 GGGP geranylgeranylg 97.0 0.0037 8E-08 57.1 9.0 66 236-306 140-205 (205)
226 PRK07896 nicotinate-nucleotide 97.0 0.04 8.7E-07 52.9 16.2 86 213-310 189-278 (289)
227 PRK05718 keto-hydroxyglutarate 97.0 0.029 6.4E-07 51.5 14.7 155 90-311 29-187 (212)
228 PRK13586 1-(5-phosphoribosyl)- 97.0 0.008 1.7E-07 56.0 11.0 74 233-310 33-106 (232)
229 TIGR02134 transald_staph trans 97.0 0.17 3.7E-06 47.2 19.7 176 89-314 13-207 (236)
230 PRK06106 nicotinate-nucleotide 97.0 0.0086 1.9E-07 57.2 11.4 85 214-310 184-270 (281)
231 PF01729 QRPTase_C: Quinolinat 96.9 0.0091 2E-07 52.9 10.5 86 214-310 70-159 (169)
232 PRK14114 1-(5-phosphoribosyl)- 96.9 0.0051 1.1E-07 57.7 9.4 73 234-310 34-106 (241)
233 PRK13586 1-(5-phosphoribosyl)- 96.9 0.0047 1E-07 57.6 9.0 72 234-311 150-223 (232)
234 COG0800 Eda 2-keto-3-deoxy-6-p 96.9 0.015 3.2E-07 53.1 11.5 162 131-310 20-185 (211)
235 PRK08185 hypothetical protein; 96.9 0.45 9.7E-06 45.7 22.2 110 231-342 149-277 (283)
236 PRK04128 1-(5-phosphoribosyl)- 96.8 0.0036 7.7E-08 58.2 7.5 36 277-312 182-217 (228)
237 KOG1606 Stationary phase-induc 96.8 0.01 2.2E-07 53.8 9.9 96 213-311 114-243 (296)
238 PRK05581 ribulose-phosphate 3- 96.8 0.034 7.4E-07 50.8 13.9 76 233-310 122-202 (220)
239 PRK06978 nicotinate-nucleotide 96.8 0.048 1E-06 52.4 15.1 76 223-310 206-281 (294)
240 TIGR01334 modD putative molybd 96.8 0.045 9.7E-07 52.3 14.8 82 216-309 181-266 (277)
241 PRK06096 molybdenum transport 96.8 0.061 1.3E-06 51.6 15.6 148 137-308 109-266 (284)
242 PRK11750 gltB glutamate syntha 96.8 0.012 2.7E-07 66.8 12.3 120 234-353 601-734 (1485)
243 PLN02446 (5-phosphoribosyl)-5- 96.8 0.0069 1.5E-07 57.3 8.8 76 232-310 164-242 (262)
244 TIGR01919 hisA-trpF 1-(5-phosp 96.8 0.0085 1.8E-07 56.2 9.4 73 234-310 35-107 (243)
245 TIGR01768 GGGP-family geranylg 96.8 0.0089 1.9E-07 55.2 9.3 66 242-311 148-213 (223)
246 PRK12595 bifunctional 3-deoxy- 96.7 0.28 6E-06 48.7 20.3 205 55-309 99-325 (360)
247 PLN02446 (5-phosphoribosyl)-5- 96.7 0.0073 1.6E-07 57.1 8.7 71 233-311 46-116 (262)
248 TIGR00343 pyridoxal 5'-phospha 96.7 0.023 4.9E-07 54.1 11.9 81 213-304 58-139 (287)
249 COG0036 Rpe Pentose-5-phosphat 96.7 0.074 1.6E-06 48.9 14.8 153 132-332 12-217 (220)
250 PF04898 Glu_syn_central: Glut 96.7 0.016 3.5E-07 55.4 10.9 120 234-353 146-280 (287)
251 PLN02898 HMP-P kinase/thiamin- 96.7 0.029 6.3E-07 58.1 13.4 93 216-311 382-480 (502)
252 PRK07315 fructose-bisphosphate 96.7 0.041 8.9E-07 53.1 13.4 79 231-311 154-237 (293)
253 PRK07998 gatY putative fructos 96.6 0.33 7.2E-06 46.6 19.4 107 231-342 153-278 (283)
254 PF09370 TIM-br_sig_trns: TIM- 96.6 0.09 2E-06 49.6 15.0 194 72-309 15-249 (268)
255 PRK06543 nicotinate-nucleotide 96.6 0.018 3.9E-07 55.1 10.5 83 216-310 185-269 (281)
256 PRK08999 hypothetical protein; 96.6 0.013 2.9E-07 56.6 9.9 77 230-309 233-311 (312)
257 TIGR00259 thylakoid_BtpA membr 96.6 0.014 3E-07 55.1 9.2 70 234-310 161-231 (257)
258 PRK05283 deoxyribose-phosphate 96.5 0.027 5.8E-07 53.1 11.0 89 216-310 123-226 (257)
259 TIGR01949 AroFGH_arch predicte 96.5 0.0088 1.9E-07 56.5 7.9 82 219-311 133-232 (258)
260 PF04481 DUF561: Protein of un 96.5 0.01 2.3E-07 54.0 7.8 72 234-310 136-218 (242)
261 cd04727 pdxS PdxS is a subunit 96.5 0.14 3E-06 48.8 15.6 81 213-304 56-137 (283)
262 PRK03512 thiamine-phosphate py 96.5 0.063 1.4E-06 49.3 12.9 80 230-311 109-191 (211)
263 PF01884 PcrB: PcrB family; I 96.4 0.006 1.3E-07 56.6 5.9 67 240-311 150-216 (230)
264 PLN02617 imidazole glycerol ph 96.4 0.013 2.9E-07 61.0 9.1 75 233-312 441-518 (538)
265 PF04131 NanE: Putative N-acet 96.4 0.03 6.4E-07 50.3 9.6 84 213-304 23-117 (192)
266 PRK08673 3-deoxy-7-phosphohept 96.3 0.15 3.2E-06 50.2 15.3 119 220-340 198-333 (335)
267 TIGR01182 eda Entner-Doudoroff 96.3 0.022 4.8E-07 52.0 8.9 75 216-305 52-127 (204)
268 PRK08745 ribulose-phosphate 3- 96.3 0.19 4.1E-06 46.6 15.1 108 216-332 105-219 (223)
269 PRK08227 autoinducer 2 aldolas 96.3 0.1 2.2E-06 49.5 13.5 78 219-310 137-230 (264)
270 PRK06843 inosine 5-monophospha 96.3 0.018 3.8E-07 57.9 8.6 67 234-306 156-222 (404)
271 PRK09722 allulose-6-phosphate 96.3 0.4 8.6E-06 44.6 17.0 111 216-333 103-220 (229)
272 PRK08091 ribulose-phosphate 3- 96.2 0.19 4E-06 46.8 14.6 93 215-311 110-211 (228)
273 PLN02617 imidazole glycerol ph 96.2 0.024 5.2E-07 59.1 9.5 76 234-311 271-359 (538)
274 PRK09517 multifunctional thiam 96.2 0.1 2.2E-06 56.8 14.7 96 214-310 91-198 (755)
275 PRK03170 dihydrodipicolinate s 96.2 0.94 2E-05 43.4 19.8 184 72-311 6-210 (292)
276 TIGR02129 hisA_euk phosphoribo 96.0 0.034 7.4E-07 52.4 8.8 71 234-310 162-236 (253)
277 PTZ00314 inosine-5'-monophosph 96.0 0.026 5.6E-07 58.4 8.6 246 42-306 19-310 (495)
278 cd00381 IMPDH IMPDH: The catal 96.0 0.037 8.1E-07 54.1 9.3 68 233-306 96-163 (325)
279 cd00947 TBP_aldolase_IIB Tagat 96.0 1.6 3.5E-05 41.7 21.5 109 231-341 148-274 (276)
280 PLN02417 dihydrodipicolinate s 95.9 0.061 1.3E-06 51.5 10.2 92 236-330 28-124 (280)
281 cd00377 ICL_PEPM Members of th 95.9 0.18 3.9E-06 47.3 13.1 93 216-308 63-182 (243)
282 PLN02716 nicotinate-nucleotide 95.9 0.061 1.3E-06 52.0 10.0 80 229-310 209-294 (308)
283 PRK13398 3-deoxy-7-phosphohept 95.9 0.41 8.9E-06 45.5 15.5 88 220-309 132-234 (266)
284 COG0106 HisA Phosphoribosylfor 95.9 0.069 1.5E-06 49.7 9.8 73 233-309 34-107 (241)
285 TIGR01302 IMP_dehydrog inosine 95.8 0.037 8E-07 56.6 8.6 249 42-306 3-293 (450)
286 PLN02274 inosine-5'-monophosph 95.8 0.042 9.1E-07 57.0 9.1 246 42-306 23-317 (505)
287 PRK09195 gatY tagatose-bisphos 95.7 2.1 4.4E-05 41.2 21.5 109 231-342 155-281 (284)
288 TIGR02313 HpaI-NOT-DapA 2,4-di 95.7 0.079 1.7E-06 51.1 10.1 93 236-331 27-124 (294)
289 cd04729 NanE N-acetylmannosami 95.7 0.42 9.1E-06 43.8 14.5 86 216-306 54-150 (219)
290 PRK03620 5-dehydro-4-deoxygluc 95.7 0.073 1.6E-06 51.5 9.8 92 236-331 34-130 (303)
291 cd00452 KDPG_aldolase KDPG and 95.7 0.083 1.8E-06 47.5 9.5 76 216-306 48-124 (190)
292 KOG4201 Anthranilate synthase 95.7 0.057 1.2E-06 49.2 8.1 81 229-312 192-272 (289)
293 PRK13396 3-deoxy-7-phosphohept 95.6 0.27 5.8E-06 48.6 13.5 119 220-340 206-342 (352)
294 cd00951 KDGDH 5-dehydro-4-deox 95.6 0.083 1.8E-06 50.8 9.8 91 236-330 27-122 (289)
295 PRK06552 keto-hydroxyglutarate 95.6 0.067 1.5E-06 49.2 8.7 75 216-305 57-135 (213)
296 PRK14057 epimerase; Provisiona 95.6 0.48 1E-05 44.7 14.5 77 231-309 143-224 (254)
297 PF03437 BtpA: BtpA family; I 95.6 0.04 8.6E-07 52.0 7.3 70 234-311 162-232 (254)
298 TIGR02313 HpaI-NOT-DapA 2,4-di 95.6 2.4 5.1E-05 40.9 19.9 183 72-311 5-211 (294)
299 TIGR00734 hisAF_rel hisA/hisF 95.5 0.067 1.5E-06 49.4 8.5 72 233-310 39-112 (221)
300 cd00952 CHBPH_aldolase Trans-o 95.5 0.096 2.1E-06 50.9 9.8 92 236-330 35-131 (309)
301 cd00408 DHDPS-like Dihydrodipi 95.5 0.11 2.5E-06 49.3 10.2 92 236-330 24-120 (281)
302 PRK07107 inosine 5-monophospha 95.5 0.063 1.4E-06 55.6 8.9 68 234-306 245-312 (502)
303 PF00478 IMPDH: IMP dehydrogen 95.5 0.059 1.3E-06 53.2 8.2 68 233-306 110-177 (352)
304 cd00408 DHDPS-like Dihydrodipi 95.4 2.4 5.3E-05 40.2 21.7 181 73-310 3-205 (281)
305 TIGR01163 rpe ribulose-phospha 95.4 0.59 1.3E-05 42.1 14.3 124 132-307 7-134 (210)
306 PRK07807 inosine 5-monophospha 95.4 0.074 1.6E-06 54.8 9.0 247 42-306 14-296 (479)
307 TIGR01306 GMP_reduct_2 guanosi 95.3 0.17 3.7E-06 49.4 10.8 85 216-306 74-165 (321)
308 PF00834 Ribul_P_3_epim: Ribul 95.3 0.14 3.1E-06 46.6 9.7 47 263-310 149-198 (201)
309 cd00331 IGPS Indole-3-glycerol 95.3 0.072 1.6E-06 48.8 7.9 71 233-309 34-104 (217)
310 COG0329 DapA Dihydrodipicolina 95.2 0.15 3.2E-06 49.4 10.1 77 236-312 31-112 (299)
311 PRK08005 epimerase; Validated 95.2 1.5 3.3E-05 40.3 16.1 91 216-310 101-195 (210)
312 TIGR00683 nanA N-acetylneurami 95.2 0.15 3.3E-06 49.0 10.0 91 236-329 27-123 (290)
313 COG2876 AroA 3-deoxy-D-arabino 95.2 1.4 3E-05 41.7 15.7 92 213-306 141-249 (286)
314 cd00950 DHDPS Dihydrodipicolin 95.1 2.8 6.1E-05 39.8 18.6 182 73-311 6-209 (284)
315 TIGR03249 KdgD 5-dehydro-4-deo 95.1 0.14 3.1E-06 49.3 9.8 91 236-330 32-127 (296)
316 PRK01130 N-acetylmannosamine-6 95.1 0.81 1.7E-05 41.9 14.3 86 216-306 50-146 (221)
317 PRK09250 fructose-bisphosphate 95.1 0.21 4.5E-06 49.1 10.6 76 236-311 223-323 (348)
318 TIGR01361 DAHP_synth_Bsub phos 95.1 1.3 2.7E-05 42.1 15.7 88 220-309 130-232 (260)
319 PF01081 Aldolase: KDPG and KH 95.0 0.14 3E-06 46.5 8.7 76 216-306 52-128 (196)
320 COG3010 NanE Putative N-acetyl 94.9 0.68 1.5E-05 42.1 12.6 84 214-304 58-152 (229)
321 PRK13957 indole-3-glycerol-pho 94.9 0.16 3.5E-06 47.7 9.0 70 234-309 65-134 (247)
322 PRK04147 N-acetylneuraminate l 94.9 0.19 4.2E-06 48.3 9.9 90 236-328 30-125 (293)
323 TIGR01303 IMP_DH_rel_1 IMP deh 94.9 0.13 2.9E-06 52.9 9.1 244 42-306 13-294 (475)
324 TIGR00674 dapA dihydrodipicoli 94.8 0.23 4.9E-06 47.6 10.1 92 236-330 25-121 (285)
325 PRK06852 aldolase; Validated 94.8 0.17 3.8E-06 48.9 9.2 88 219-311 164-270 (304)
326 PRK13306 ulaD 3-keto-L-gulonat 94.8 0.091 2E-06 48.4 7.0 97 231-334 117-213 (216)
327 cd00954 NAL N-Acetylneuraminic 94.8 0.21 4.6E-06 47.9 9.8 92 236-330 27-124 (288)
328 cd00950 DHDPS Dihydrodipicolin 94.8 0.24 5.2E-06 47.2 10.1 92 236-330 27-123 (284)
329 TIGR01305 GMP_reduct_1 guanosi 94.7 0.14 3.1E-06 49.9 8.5 68 233-306 109-178 (343)
330 TIGR01858 tag_bisphos_ald clas 94.7 4.2 9.1E-05 39.1 21.2 109 231-342 153-279 (282)
331 PRK07565 dihydroorotate dehydr 94.7 0.32 6.9E-06 47.7 11.1 90 216-307 95-198 (334)
332 PRK07114 keto-hydroxyglutarate 94.7 0.15 3.3E-06 47.1 8.3 69 223-306 71-139 (222)
333 COG0157 NadC Nicotinate-nucleo 94.7 0.31 6.7E-06 46.3 10.4 70 229-309 194-265 (280)
334 PRK07709 fructose-bisphosphate 94.7 0.84 1.8E-05 43.9 13.5 109 231-342 156-282 (285)
335 COG0329 DapA Dihydrodipicolina 94.6 4.5 9.9E-05 39.1 24.3 182 72-308 9-211 (299)
336 PF00701 DHDPS: Dihydrodipicol 94.6 0.16 3.4E-06 48.7 8.5 90 236-328 28-122 (289)
337 PRK05458 guanosine 5'-monophos 94.6 0.16 3.5E-06 49.7 8.5 67 234-306 100-168 (326)
338 PRK09140 2-dehydro-3-deoxy-6-p 94.6 0.26 5.6E-06 45.1 9.5 75 216-305 54-130 (206)
339 PRK13813 orotidine 5'-phosphat 94.6 0.11 2.3E-06 47.5 6.9 81 236-333 132-213 (215)
340 PRK05567 inosine 5'-monophosph 94.5 0.17 3.6E-06 52.4 9.0 243 42-306 10-297 (486)
341 TIGR03249 KdgD 5-dehydro-4-deo 94.5 4.7 0.0001 38.7 21.1 185 72-311 10-214 (296)
342 COG1830 FbaB DhnA-type fructos 94.5 0.64 1.4E-05 43.9 11.8 79 236-328 172-256 (265)
343 PF03932 CutC: CutC family; I 94.5 0.6 1.3E-05 42.6 11.3 121 130-303 66-196 (201)
344 KOG2335 tRNA-dihydrouridine sy 94.4 0.53 1.2E-05 46.2 11.6 87 122-250 141-233 (358)
345 cd00945 Aldolase_Class_I Class 94.3 0.49 1.1E-05 41.8 10.5 65 235-312 18-91 (201)
346 PRK12457 2-dehydro-3-deoxyphos 94.3 1.3 2.8E-05 42.2 13.4 85 221-307 129-238 (281)
347 PRK03170 dihydrodipicolinate s 94.3 0.33 7E-06 46.6 9.8 92 236-330 28-124 (292)
348 PLN02591 tryptophan synthase 94.2 0.88 1.9E-05 42.9 12.4 37 214-250 181-218 (250)
349 CHL00200 trpA tryptophan synth 94.2 1 2.2E-05 42.9 12.7 36 215-250 195-231 (263)
350 TIGR03569 NeuB_NnaB N-acetylne 94.0 5.5 0.00012 39.1 17.9 226 73-341 1-260 (329)
351 TIGR00167 cbbA ketose-bisphosp 94.0 1.4 3E-05 42.4 13.5 108 231-342 158-285 (288)
352 PRK12737 gatY tagatose-bisphos 93.9 6.3 0.00014 37.9 21.4 107 231-342 155-281 (284)
353 PRK05096 guanosine 5'-monophos 93.8 0.28 6E-06 48.0 8.3 67 234-306 111-179 (346)
354 cd00439 Transaldolase Transald 93.6 6.3 0.00014 37.2 17.0 90 221-313 138-241 (252)
355 cd00951 KDGDH 5-dehydro-4-deox 93.6 7 0.00015 37.5 22.7 184 73-311 6-209 (289)
356 TIGR00736 nifR3_rel_arch TIM-b 93.5 0.64 1.4E-05 43.3 9.8 81 123-250 135-220 (231)
357 cd02809 alpha_hydroxyacid_oxid 93.5 0.75 1.6E-05 44.4 10.7 89 213-306 106-200 (299)
358 PF04309 G3P_antiterm: Glycero 93.5 0.035 7.7E-07 49.4 1.3 142 125-311 22-174 (175)
359 PRK05835 fructose-bisphosphate 93.4 2.3 5E-05 41.3 13.9 110 231-342 155-304 (307)
360 PRK00230 orotidine 5'-phosphat 93.4 0.25 5.4E-06 45.9 7.0 79 234-333 139-228 (230)
361 PF01207 Dus: Dihydrouridine s 93.4 0.41 8.9E-06 46.5 8.8 85 121-249 121-212 (309)
362 cd03319 L-Ala-DL-Glu_epimerase 93.4 3.4 7.5E-05 39.9 15.3 126 125-308 126-260 (316)
363 cd04728 ThiG Thiazole synthase 93.4 0.59 1.3E-05 43.7 9.2 104 123-250 90-204 (248)
364 cd06556 ICL_KPHMT Members of t 93.3 0.45 9.8E-06 44.6 8.6 85 221-306 10-109 (240)
365 TIGR01362 KDO8P_synth 3-deoxy- 93.3 2.3 5.1E-05 40.0 13.2 83 221-307 115-222 (258)
366 PRK12738 kbaY tagatose-bisphos 93.2 3 6.5E-05 40.1 14.2 109 231-342 155-281 (286)
367 PRK08610 fructose-bisphosphate 93.2 2.4 5.2E-05 40.8 13.5 108 231-342 156-282 (286)
368 COG1646 Predicted phosphate-bi 93.2 0.41 8.8E-06 44.3 7.8 61 242-309 163-223 (240)
369 cd00516 PRTase_typeII Phosphor 93.1 0.91 2E-05 43.2 10.6 90 216-310 174-271 (281)
370 COG0135 TrpF Phosphoribosylant 93.0 5.9 0.00013 36.3 15.2 88 215-307 91-184 (208)
371 cd01571 NAPRTase_B Nicotinate 92.9 0.67 1.5E-05 44.9 9.5 89 216-310 176-277 (302)
372 TIGR00674 dapA dihydrodipicoli 92.7 9.5 0.0002 36.4 22.9 183 73-311 4-207 (285)
373 PRK00208 thiG thiazole synthas 92.5 1 2.3E-05 42.2 9.6 107 123-250 90-204 (250)
374 PRK05198 2-dehydro-3-deoxyphos 92.4 3.5 7.6E-05 39.0 13.0 83 221-307 123-230 (264)
375 PRK10550 tRNA-dihydrouridine s 92.3 1.7 3.7E-05 42.3 11.4 84 123-249 134-223 (312)
376 TIGR02320 PEP_mutase phosphoen 92.2 11 0.00025 36.2 18.3 69 236-312 175-246 (285)
377 PRK05286 dihydroorotate dehydr 92.2 1.2 2.5E-05 44.0 10.3 100 123-249 212-317 (344)
378 PF01116 F_bP_aldolase: Fructo 92.2 4.6 9.9E-05 38.9 14.0 111 231-342 155-284 (287)
379 cd02810 DHOD_DHPD_FMN Dihydroo 92.2 2.1 4.6E-05 40.7 11.8 152 71-250 98-272 (289)
380 PF13714 PEP_mutase: Phosphoen 92.0 0.94 2E-05 42.4 8.9 84 222-307 8-106 (238)
381 TIGR02317 prpB methylisocitrat 92.0 0.8 1.7E-05 44.0 8.5 83 222-306 12-108 (285)
382 cd04739 DHOD_like Dihydroorota 92.0 3.8 8.3E-05 40.0 13.5 183 71-295 99-302 (325)
383 PRK11320 prpB 2-methylisocitra 91.8 0.88 1.9E-05 43.9 8.6 82 222-305 16-112 (292)
384 TIGR00262 trpA tryptophan synt 91.7 4.3 9.2E-05 38.4 13.1 36 215-250 191-227 (256)
385 COG0434 SgcQ Predicted TIM-bar 91.6 0.55 1.2E-05 43.6 6.6 71 232-310 164-236 (263)
386 PRK03620 5-dehydro-4-deoxygluc 91.5 14 0.0003 35.7 21.6 184 72-311 12-216 (303)
387 PRK11572 copper homeostasis pr 91.2 1.5 3.2E-05 41.2 9.2 73 231-307 9-94 (248)
388 PLN02535 glycolate oxidase 91.1 1.6 3.4E-05 43.5 9.8 91 213-306 114-251 (364)
389 PLN03033 2-dehydro-3-deoxyphos 91.1 6.8 0.00015 37.5 13.5 83 221-307 129-241 (290)
390 PF00701 DHDPS: Dihydrodipicol 91.1 14 0.00031 35.1 20.2 181 73-311 7-210 (289)
391 TIGR01521 FruBisAldo_II_B fruc 91.0 5 0.00011 39.7 13.0 112 231-343 171-325 (347)
392 COG0042 tRNA-dihydrouridine sy 90.9 1.8 3.9E-05 42.4 9.9 83 123-249 137-227 (323)
393 PRK09196 fructose-1,6-bisphosp 90.9 5.1 0.00011 39.6 13.0 112 231-343 173-327 (347)
394 PF03932 CutC: CutC family; I 90.7 1.4 3.1E-05 40.1 8.3 73 231-307 8-93 (201)
395 PRK12309 transaldolase/EF-hand 90.6 17 0.00036 36.6 16.7 88 221-313 153-256 (391)
396 PRK11572 copper homeostasis pr 90.5 6.5 0.00014 37.0 12.7 67 234-306 132-198 (248)
397 COG0352 ThiE Thiamine monophos 90.5 10 0.00022 34.8 13.8 35 216-250 152-186 (211)
398 cd04726 KGPDC_HPS 3-Keto-L-gul 90.4 2.5 5.4E-05 37.8 9.8 83 215-306 45-133 (202)
399 TIGR02319 CPEP_Pphonmut carbox 90.3 0.97 2.1E-05 43.7 7.3 83 222-306 15-112 (294)
400 PRK13399 fructose-1,6-bisphosp 90.3 5.8 0.00013 39.2 12.8 112 231-343 173-327 (347)
401 COG3142 CutC Uncharacterized p 90.3 4.9 0.00011 37.3 11.3 121 130-303 67-197 (241)
402 COG1954 GlpP Glycerol-3-phosph 90.1 1.2 2.6E-05 39.4 7.0 60 236-306 114-173 (181)
403 PF00218 IGPS: Indole-3-glycer 89.8 2 4.4E-05 40.6 8.9 70 234-309 72-141 (254)
404 TIGR03569 NeuB_NnaB N-acetylne 89.7 8.3 0.00018 37.9 13.4 72 219-301 86-161 (329)
405 PRK04147 N-acetylneuraminate l 89.7 20 0.00042 34.4 20.7 180 72-309 8-210 (293)
406 cd00957 Transaldolase_TalAB Tr 89.6 3.1 6.7E-05 40.6 10.2 90 221-315 147-252 (313)
407 PRK00278 trpC indole-3-glycero 89.5 2 4.4E-05 40.6 8.8 71 233-309 73-143 (260)
408 cd00377 ICL_PEPM Members of th 89.5 1.5 3.3E-05 41.0 7.9 82 222-305 8-103 (243)
409 PTZ00411 transaldolase-like pr 89.4 4.1 8.9E-05 40.1 10.9 91 221-315 159-264 (333)
410 KOG2550 IMP dehydrogenase/GMP 89.4 1.6 3.4E-05 43.7 8.0 248 40-306 29-320 (503)
411 cd06557 KPHMT-like Ketopantoat 89.4 12 0.00026 35.4 13.7 80 216-306 66-178 (254)
412 PF05690 ThiG: Thiazole biosyn 89.4 2.3 4.9E-05 39.6 8.5 37 213-249 166-203 (247)
413 cd02911 arch_FMN Archeal FMN-b 89.4 4 8.8E-05 38.0 10.5 38 213-250 181-220 (233)
414 TIGR00737 nifR3_yhdG putative 89.2 3.7 8E-05 39.9 10.6 34 216-249 186-221 (319)
415 PRK07455 keto-hydroxyglutarate 89.2 3.8 8.1E-05 36.8 9.8 65 234-307 28-92 (187)
416 PRK13111 trpA tryptophan synth 89.1 8 0.00017 36.6 12.4 35 215-250 193-228 (258)
417 COG2022 ThiG Uncharacterized e 89.1 4.8 0.0001 37.4 10.3 95 134-249 115-210 (262)
418 PRK05269 transaldolase B; Prov 89.0 24 0.00051 34.6 15.9 89 221-314 149-253 (318)
419 TIGR03586 PseI pseudaminic aci 89.0 24 0.00053 34.6 20.2 116 220-342 132-260 (327)
420 cd02922 FCB2_FMN Flavocytochro 88.9 1.8 3.9E-05 42.7 8.2 43 262-307 200-242 (344)
421 TIGR00259 thylakoid_BtpA membr 88.9 1.3 2.7E-05 42.0 6.8 73 233-306 31-109 (257)
422 COG2089 SpsE Sialic acid synth 88.9 22 0.00047 34.8 15.1 206 62-303 1-232 (347)
423 PRK10415 tRNA-dihydrouridine s 88.9 4.6 9.9E-05 39.5 10.9 34 216-249 188-223 (321)
424 PRK12857 fructose-1,6-bisphosp 88.8 13 0.00029 35.6 13.8 107 231-342 155-281 (284)
425 COG0135 TrpF Phosphoribosylant 88.8 16 0.00034 33.5 13.6 63 210-274 141-205 (208)
426 PF01702 TGT: Queuine tRNA-rib 88.8 6 0.00013 36.7 11.3 75 235-312 73-147 (238)
427 PRK07084 fructose-bisphosphate 88.6 6.6 0.00014 38.4 11.6 81 231-312 164-274 (321)
428 COG0159 TrpA Tryptophan syntha 88.4 1.9 4.1E-05 40.9 7.6 36 214-250 197-233 (265)
429 cd00429 RPE Ribulose-5-phospha 88.3 18 0.00039 32.2 14.1 83 216-307 51-135 (211)
430 TIGR01037 pyrD_sub1_fam dihydr 88.1 3 6.6E-05 40.0 9.1 34 216-249 228-262 (300)
431 COG0800 Eda 2-keto-3-deoxy-6-p 88.1 3.5 7.7E-05 37.7 8.8 61 235-304 30-90 (211)
432 COG2513 PrpB PEP phosphonomuta 87.8 2.3 5E-05 40.7 7.7 84 222-307 17-114 (289)
433 cd04740 DHOD_1B_like Dihydroor 87.6 5.5 0.00012 38.1 10.5 34 216-249 225-259 (296)
434 CHL00162 thiG thiamin biosynth 87.6 2.2 4.8E-05 40.1 7.4 37 213-249 180-217 (267)
435 PRK09427 bifunctional indole-3 87.6 11 0.00025 38.6 13.2 66 229-305 218-283 (454)
436 cd02940 DHPD_FMN Dihydropyrimi 87.5 4.4 9.6E-05 39.0 9.8 106 123-249 169-280 (299)
437 cd02801 DUS_like_FMN Dihydrour 87.5 5.8 0.00013 36.2 10.2 34 216-249 177-212 (231)
438 PLN02858 fructose-bisphosphate 87.5 67 0.0014 37.8 22.5 111 231-342 1250-1375(1378)
439 PRK05265 pyridoxine 5'-phospha 87.3 22 0.00047 33.3 13.6 94 214-310 57-158 (239)
440 TIGR02321 Pphn_pyruv_hyd phosp 87.2 3.7 7.9E-05 39.6 8.9 83 222-306 14-110 (290)
441 PF00290 Trp_syntA: Tryptophan 87.2 5.4 0.00012 37.8 9.9 35 215-250 191-226 (259)
442 cd00953 KDG_aldolase KDG (2-ke 87.2 4.7 0.0001 38.4 9.7 92 234-330 24-120 (279)
443 PRK07259 dihydroorotate dehydr 87.0 5.4 0.00012 38.3 10.1 84 220-305 89-188 (301)
444 cd00954 NAL N-Acetylneuraminic 87.0 29 0.00063 33.1 22.1 181 73-309 6-209 (288)
445 PRK08318 dihydropyrimidine deh 86.9 5.6 0.00012 40.2 10.6 107 123-250 169-282 (420)
446 cd03316 MR_like Mandelate race 86.8 12 0.00026 36.7 12.6 81 216-306 181-270 (357)
447 TIGR00742 yjbN tRNA dihydrouri 86.7 7.7 0.00017 37.9 11.0 91 122-249 123-222 (318)
448 TIGR03586 PseI pseudaminic aci 86.6 17 0.00037 35.7 13.3 77 218-305 86-166 (327)
449 COG0176 MipB Transaldolase [Ca 86.6 28 0.00061 32.6 17.4 104 222-328 115-230 (239)
450 cd06557 KPHMT-like Ketopantoat 86.5 3.6 7.7E-05 38.9 8.3 82 222-305 11-110 (254)
451 PLN02495 oxidoreductase, actin 86.5 6.5 0.00014 39.5 10.5 94 216-309 106-217 (385)
452 cd04738 DHOD_2_like Dihydrooro 86.1 3.3 7.1E-05 40.5 8.2 100 123-249 203-308 (327)
453 TIGR00559 pdxJ pyridoxine 5'-p 85.9 29 0.00063 32.4 13.7 94 214-310 54-155 (237)
454 PF03740 PdxJ: Pyridoxal phosp 85.8 31 0.00067 32.3 17.2 96 213-311 54-157 (239)
455 PF03437 BtpA: BtpA family; I 85.7 4.5 9.8E-05 38.2 8.5 72 233-307 32-111 (254)
456 TIGR00693 thiE thiamine-phosph 85.6 12 0.00025 33.3 10.9 75 216-308 51-125 (196)
457 COG2070 Dioxygenases related t 85.6 12 0.00026 36.8 11.8 114 90-249 93-212 (336)
458 PRK13533 7-cyano-7-deazaguanin 85.5 18 0.00038 37.6 13.4 182 95-312 45-253 (487)
459 PRK02227 hypothetical protein; 85.3 4.4 9.5E-05 37.9 8.0 76 230-307 7-88 (238)
460 cd00405 PRAI Phosphoribosylant 85.2 2.1 4.6E-05 38.6 6.0 73 229-307 5-81 (203)
461 COG5564 Predicted TIM-barrel e 85.1 17 0.00037 33.6 11.4 78 230-307 163-253 (276)
462 PRK12858 tagatose 1,6-diphosph 84.6 2.7 5.9E-05 41.4 6.7 73 236-311 190-281 (340)
463 PRK12346 transaldolase A; Prov 84.4 13 0.00028 36.4 11.2 90 221-315 148-253 (316)
464 COG4981 Enoyl reductase domain 84.1 56 0.0012 34.3 15.8 37 276-312 212-259 (717)
465 COG0434 SgcQ Predicted TIM-bar 84.0 4.6 9.9E-05 37.7 7.4 73 233-306 37-115 (263)
466 cd02811 IDI-2_FMN Isopentenyl- 83.8 13 0.00027 36.4 11.1 92 214-307 103-210 (326)
467 PLN02979 glycolate oxidase 83.8 2 4.3E-05 42.7 5.4 43 262-307 210-252 (366)
468 PF01680 SOR_SNZ: SOR/SNZ fami 83.7 3.9 8.4E-05 36.5 6.5 79 214-303 63-142 (208)
469 TIGR00640 acid_CoA_mut_C methy 83.7 7 0.00015 33.1 8.1 76 221-304 29-110 (132)
470 PRK10558 alpha-dehydro-beta-de 83.5 19 0.00042 34.0 11.8 150 140-342 31-212 (256)
471 PRK05437 isopentenyl pyrophosp 83.3 10 0.00022 37.6 10.3 93 213-307 110-218 (352)
472 TIGR00449 tgt_general tRNA-gua 83.2 24 0.00051 35.3 12.8 73 234-310 194-267 (367)
473 PRK11840 bifunctional sulfur c 83.2 12 0.00026 36.6 10.3 161 62-249 74-277 (326)
474 cd03332 LMO_FMN L-Lactate 2-mo 83.2 2.3 5E-05 42.6 5.7 43 262-307 240-282 (383)
475 PRK07188 nicotinate phosphorib 83.2 7 0.00015 38.8 9.0 96 213-311 192-315 (352)
476 TIGR00874 talAB transaldolase. 82.9 17 0.00036 35.6 11.3 89 221-314 147-251 (317)
477 PRK11197 lldD L-lactate dehydr 82.7 2.3 5E-05 42.6 5.4 43 262-307 232-274 (381)
478 PRK13523 NADPH dehydrogenase N 82.5 11 0.00024 37.1 10.1 77 134-249 225-304 (337)
479 PF03060 NMO: Nitronate monoox 82.3 12 0.00025 36.7 10.2 34 216-249 184-218 (330)
480 TIGR01036 pyrD_sub2 dihydrooro 82.3 14 0.0003 36.3 10.7 102 123-249 211-316 (335)
481 PRK00311 panB 3-methyl-2-oxobu 82.2 9.4 0.0002 36.3 9.1 82 222-305 14-113 (264)
482 TIGR02320 PEP_mutase phosphoen 82.0 6.7 0.00015 37.7 8.2 81 222-305 8-111 (285)
483 PRK13534 7-cyano-7-deazaguanin 82.0 21 0.00046 38.3 12.6 200 68-312 21-250 (639)
484 TIGR03151 enACPred_II putative 81.9 29 0.00063 33.6 12.7 35 216-250 155-190 (307)
485 PLN02493 probable peroxisomal 81.9 2.6 5.6E-05 42.0 5.4 42 263-307 212-253 (367)
486 COG1519 KdtA 3-deoxy-D-manno-o 81.7 41 0.00089 34.1 13.7 82 224-307 177-268 (419)
487 PRK05581 ribulose-phosphate 3- 81.5 40 0.00087 30.3 13.4 83 216-307 55-139 (220)
488 cd04722 TIM_phosphate_binding 81.4 5.3 0.00012 34.6 6.8 74 233-308 15-93 (200)
489 cd04736 MDH_FMN Mandelate dehy 81.4 3.1 6.6E-05 41.4 5.7 41 263-306 224-264 (361)
490 TIGR02319 CPEP_Pphonmut carbox 81.4 10 0.00022 36.7 9.1 67 236-313 171-240 (294)
491 PF04476 DUF556: Protein of un 81.3 13 0.00029 34.5 9.5 76 230-307 7-88 (235)
492 PF01680 SOR_SNZ: SOR/SNZ fami 81.3 14 0.0003 33.1 9.1 79 220-304 12-98 (208)
493 PRK12595 bifunctional 3-deoxy- 80.8 38 0.00082 33.7 13.2 156 78-253 160-325 (360)
494 cd00564 TMP_TenI Thiamine mono 80.7 37 0.00081 29.5 13.6 35 216-250 144-178 (196)
495 COG0191 Fba Fructose/tagatose 80.6 56 0.0012 31.4 13.9 110 231-342 156-283 (286)
496 TIGR01520 FruBisAldo_II_A fruc 80.6 24 0.00051 35.1 11.5 82 231-312 195-293 (357)
497 TIGR01361 DAHP_synth_Bsub phos 80.6 27 0.00059 33.0 11.7 37 216-252 188-231 (260)
498 PF09370 TIM-br_sig_trns: TIM- 80.5 4.7 0.0001 38.2 6.3 83 222-305 14-114 (268)
499 PRK15063 isocitrate lyase; Pro 80.5 13 0.00028 37.7 9.8 86 222-307 62-182 (428)
500 PF03102 NeuB: NeuB family; I 80.0 16 0.00034 34.3 9.7 72 221-303 68-143 (241)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=8.8e-91 Score=641.41 Aligned_cols=351 Identities=76% Similarity=1.171 Sum_probs=337.3
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchh
Q 017718 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (367)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~ 83 (367)
++|++|||+.|+++||+.+|+||.|||+|+.|+++|+++|.||.|+||.|+|++.+|+||+++|.++++||+|||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
|+||+||.+++|+|.++|++|++|+++++|.|||.++.| +..|||||+++|+++++++++|||++||+++++|||+|+.
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
|+|+.|++|+|.+|+.++.+|+.+.......+...++...++..++|++++|+ |+++.|++||++|++++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999999999987765554444456778889999999999996 999999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.++|++||+||||||||+|..++++++|+|+.+++.+++||+.|||||+|.||+|||+|||.+|.+|||++|+++++|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
||.++++.|++|++.+|.+.||+|+.|+++..+..
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~ 355 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLT 355 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceee
Confidence 99999999999999999999999999999986544
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=1.6e-83 Score=625.11 Aligned_cols=354 Identities=92% Similarity=1.363 Sum_probs=325.6
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
+++||++|.++||+|+++|++|++|+++++++|||.+..+++.|||||+.+|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
|+|++|+||+|.+|..+..+++..............+...++....++.++|+ |||+.|++||++|++.+.++|+++
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999988766655543211111111112234446666678889997 999999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.++|+|+|+||||||+|+|+.++++++|+++++.+.+++|||+||||++|.|++|+|+|||++|++|||++|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeecc
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 356 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~ 356 (367)
|+.++++.+++||+..|.++|++++.|+++..+....
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~ 358 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEW 358 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHH
Confidence 9999999999999999999999999999998876553
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=1.1e-80 Score=606.22 Aligned_cols=354 Identities=65% Similarity=1.023 Sum_probs=322.9
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccc
Q 017718 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (367)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~ 81 (367)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||+|||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
+++.||++|.+++|+|+++|+++++|+++++++|||.+..+++.|||||+.+|++.++++++||+++||++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARI 238 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~ 238 (367)
.|+|++|+||+|.+|. .+++..............+...+.....++.++|+ |+++.+++||++|++.+.++|+.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998883 23322110000011112234456666678889997 89999999999999999999999
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 318 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~ 318 (367)
+.++|+|+|+|+||||+++++++++++.|+++++.+..++|||++|||+++.|++|+|++||++|++|||++|++...|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999988766899999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccCC
Q 017718 319 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 358 (367)
Q Consensus 319 ~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~~ 358 (367)
+|+.+.++.+++||+.+|.++|+.++.|+++..+.....+
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~ 359 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERER 359 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhh
Confidence 9999999999999999999999999999999888654433
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-80 Score=607.47 Aligned_cols=351 Identities=38% Similarity=0.654 Sum_probs=318.3
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
++.||++|.+++++|++.|++|++|++++.++|||.+..+++.|||||+++|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccc-----------------cCccc----c-ccchhhHHHhhhccCccccHH---HH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLD-----------------LGKMD----E-ANDSGLAAYVAGQIDRSLSWK---WL 217 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~-----------------~~~~~----~-~~~~~~~~~~~~~~d~~~~~~---~l 217 (367)
|+|++|+||+|.+|+. +.+++.... ..... . ........++....+++++|+ ||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 332211100 00000 0 001112334555678889997 99
Q ss_pred HhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 218 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 218 ~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
++.|++||++|++++.++|+.+.++|+|+|+||||||++++..+++.+.|+++++.+.+++|||+||||+++.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766899999999999999999999
Q ss_pred cCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
|||++|++||||+|+++..|++||.++++.|++||+..|.++|++++.||++..+..
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 999999999999999999999999999999999999999999999999999887743
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1e-79 Score=599.28 Aligned_cols=347 Identities=38% Similarity=0.596 Sum_probs=314.5
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccc
Q 017718 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (367)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~ 81 (367)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhC-CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q 017718 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (367)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (367)
+++.||++|.+++++|.++|++|++|+++++++|||.+.. +++.|||||+.+|+++++++++||+++|+++|++|||+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 478999999999999999999999999999999999999
Q ss_pred CCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHH
Q 017718 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDAR 237 (367)
Q Consensus 161 ~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~ 237 (367)
+.|+|++|+||+|.+|......+ ...... .... ...+....++.++|+ |+++.+++||++|++.+.++|+
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~~~-----~~~~-~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLPTG-----AGKS-MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhcccC-----Cccc-hhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999998885332111 000000 0000 001122235678897 8999999999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 238 ~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
++.++|+|+|+||||||+|++.++++++.|+++++++++++|||+||||+++.|++|+|++|||+|++|||++|+++..|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeec
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~ 355 (367)
++|+.++++.|++||+..|.++|++++.||++..+...
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~ 361 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHN 361 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccC
Confidence 99999999999999999999999999999999887443
No 6
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.4e-79 Score=597.17 Aligned_cols=339 Identities=44% Similarity=0.704 Sum_probs=309.9
Q ss_pred HHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCC
Q 017718 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (367)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~ 87 (367)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||+|||+++++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhH
Q 017718 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (367)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 167 (367)
+||.+++|+|++.|++|++|+++++++|||.+..+++.|||||+. |+++++++++||+++||++|++|||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999987767899999986 6999999999999999999999999999999999
Q ss_pred HhhhhcCCCCccccccccccccC----------------ccc---cccchhhHHHhhhccCccccHH---HHHhhcCCCE
Q 017718 168 DIKNRFTLPPFLTLKNFQGLDLG----------------KMD---EANDSGLAAYVAGQIDRSLSWK---WLQTITKLPI 225 (367)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv 225 (367)
|+||+|.+|++++.+++.+.... ... .........++..+.|+.++|+ ||++.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 99999998877665553211100 000 0011123445555678889996 9999999999
Q ss_pred EEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 226 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 226 ~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
++|++++.++|+.+.++|+|+|+||||||+|++..+++++.|+++++.+ ++|||++|||+++.||+|+|++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 59999999999999999999999999999
Q ss_pred chHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 306 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 306 g~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
|||++|+++..|++||+++++.|++||+..|.++|++++.|+++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999889999999999999999999999999999999863
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.1e-78 Score=595.52 Aligned_cols=348 Identities=42% Similarity=0.670 Sum_probs=312.4
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchh
Q 017718 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (367)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~ 83 (367)
++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+++++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
+.||++|.+++++|.+.|+++++|+++++++|||.+..+ ++.|||||+.+|++.++++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCc--ccccccc-c------cccCccccc-----cchhhHHHhhhccCccccHH---HHHhhcCCCE
Q 017718 163 GRREADIKNRFTLPPF--LTLKNFQ-G------LDLGKMDEA-----NDSGLAAYVAGQIDRSLSWK---WLQTITKLPI 225 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~--~~~~~~~-~------~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv 225 (367)
|+|++|+|++| .|.. .+..++. . ......... .............++.++|+ |+++.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999998 3421 1111100 0 000000000 01122333344457888997 8999999999
Q ss_pred EEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 226 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 226 ~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
++|++++.++|+.+.++|+|+|+|||||||+++++++++++|+++++.+++++|||++|||++|.|++|+|+||||+|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred chHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 306 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 306 g~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
||||+|+++..|++||+++++.+++||+..|.++|++++.||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988653
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=4.5e-78 Score=586.98 Aligned_cols=344 Identities=42% Similarity=0.696 Sum_probs=313.0
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhC-CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
++.||++|.+++++|.++|+++++|+.+++++|||.+.. +++.|||||..+|++.++++++||+++|+++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARI 238 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~ 238 (367)
.|+|++|+|++|.+|.+....+..... .. .+... .......++.++|+ |+++.+++||++|++.++++|+.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~--~~---~~~~~-~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEG--TG---KGKGI-SEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccc--cc---cCcch-hhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 999999999999888654432211100 00 00000 01122345677897 89999999999999999999999
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 318 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~ 318 (367)
+.++|+|+|+||||||+++++++++++.|+++++++++++|||++|||+++.|++|+|++|||+|++|||++|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 99999999999999999999999999999999988877899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 319 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 319 ~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
+||.++++.+++||+.+|.++|+++++|+++..|
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987653
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=2.7e-76 Score=577.88 Aligned_cols=340 Identities=51% Similarity=0.778 Sum_probs=302.5
Q ss_pred HHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHH
Q 017718 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (367)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~ 93 (367)
||++||+..|+||+||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhc
Q 017718 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (367)
Q Consensus 94 a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~ 173 (367)
+++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++||+++|+++++||+|+|+.++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCcc-------------ccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHH
Q 017718 174 TLPPFLTLKNFQGLDLGKM-------------DEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDAR 237 (367)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~ 237 (367)
.+|++++.+++......+. .........++.....+++++|+ |+++.|++||++|++++.+||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9998877766643221110 00122334556667778889997 9999999999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 238 ~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
++.++|+|+|+||||||||+|+++++.+.|+++++.+++++|||+|||||+|.|++|+|+|||++|++|||++|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999887799999999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
++||.++++.|++||+..|.++|++++.||+++.|.
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998763
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.4e-74 Score=562.60 Aligned_cols=335 Identities=47% Similarity=0.748 Sum_probs=305.5
Q ss_pred HHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCC
Q 017718 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (367)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~ 87 (367)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+||||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHHhh-CC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 017718 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (367)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~-~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (367)
++|.+++++|.++|++|++|++++.++|+|.+. .| .+.|||||.++|++.++++++||+++|+++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHHHc
Q 017718 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAVQA 242 (367)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~ 242 (367)
++|+||+|+.|.+++.++.... ....+...+.....++..+|+ |+++.+++||++|++.+.++|+.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999998865544331100 011112223333456677886 999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 243 GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 243 G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
|+|+|+|+||||++++..+++++.|+++++.+ ++++|||++|||+++.|++|+|+|||++|+||||+++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 99999999999999999899999999998753 457999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
||.++++.+++||+.+|.++|+++++||++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 999999999999999999999999999975
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=1.9e-69 Score=522.39 Aligned_cols=313 Identities=92% Similarity=1.343 Sum_probs=284.8
Q ss_pred cceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCc
Q 017718 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (367)
Q Consensus 45 ~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~ 124 (367)
-|+|+||+|+|++++||+|++||+++++||++||++++++.||++|.+++|+|+++|+++++|++++.++|||.+..+.+
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999876678
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
.|||||+.+|++.++++++||+++||+++++|||+|+.|+|++|+||+|.+|+.++.+++..............+..+++
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999987666666432211111111222344566
Q ss_pred hhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 205 AGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 205 ~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
....++.++|+ |||+.|++||++|++.+.++|+++.++|+|+|+||||||+++++.+++.++|+++++.+.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 66678889997 999999999999999999999999999999999999999999999999999999998887789999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccC
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~ 357 (367)
+||||++|.|++|+|+||||+|++|||++|+++..|++|+.++++.+++||+..|.++|++++.|+.+..+.....
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~ 358 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD 358 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988865543
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.3e-64 Score=489.78 Aligned_cols=346 Identities=44% Similarity=0.635 Sum_probs=317.3
Q ss_pred hHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccC
Q 017718 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (367)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~ 86 (367)
+.|+++.|+.++| +.|.|+.+|+++|.|+++|+++|++|.|+||+|++++++|++|++||+++++||+||||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 4689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchh
Q 017718 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (367)
Q Consensus 87 ~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~ 166 (367)
++++...+++|..+|.+++.++++++++|++.+..+ ||+|+..|++...++++++.++|++.+++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999876644 9999889999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccccccccccccCccc----cccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 167 ADIKNRFTLPPFLTLKNFQGLDLGKMD----EANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 167 ~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
+|.++++..|+.....|.......+-. ......+.++.....+|.++|+ |+++.|..|+++|++.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 999999988876666665432211100 1111134566667778888997 999999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.+.|+++|+++||||+|+||++++++.|++++++++++++||+|||||+|.|++|||+||||+|++|||++|++...|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccC
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~ 357 (367)
||.++++.|++||+.+|.++|+++|+||++..++....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~ 353 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeeccc
Confidence 99999999999999999999999999999998876543
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=6.6e-59 Score=447.41 Aligned_cols=296 Identities=61% Similarity=0.939 Sum_probs=278.9
Q ss_pred HHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCC
Q 017718 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (367)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~ 87 (367)
.|||..|+++||+.+|+|+.+|++++.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||+++||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhH
Q 017718 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (367)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 167 (367)
+++.+++++|+++|+++++|++++.+.+++.+..+++.|+|||...|++.+.++++++++.|+++|.+|+|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999988899999877778999999987799999999999999999999999999975333
Q ss_pred HhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCCHHHHHHHHHcCC
Q 017718 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIAVQAGA 244 (367)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~ 244 (367)
..| +++++.+++||++|++.+.++|+.+.++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 122 388888899999999999999999999999
Q ss_pred cEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHH
Q 017718 245 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 324 (367)
Q Consensus 245 d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~ 324 (367)
|+|+++||||++.++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|++||||++++...|++++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999988865799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 325 LEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 325 i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
++.+++||+.+|.++|+++++|+++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999874
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=6.4e-39 Score=311.75 Aligned_cols=267 Identities=28% Similarity=0.391 Sum_probs=211.3
Q ss_pred HhHhccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC--C
Q 017718 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--S 113 (367)
Q Consensus 38 ~n~~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~--~ 113 (367)
.+...||+|+|+|+.|+ +++++||+|+|+|+++++||+++||++++....+.+..++++|.++|+++++++++.. .
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35668999999999998 8899999999999999999999999887533334578999999999999999988431 1
Q ss_pred ------HHHHHhhCC-CceEEEEeecC----CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccc
Q 017718 114 ------VEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (367)
Q Consensus 114 ------~e~i~~~~~-~~~~~QLy~~~----d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~ 182 (367)
.+.+.+..+ .+.+..+.... +.+... +.++..+++++.++++++.. ...|
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~---~~i~~~~adalel~l~~~q~----------~~~~------ 157 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEAR---RAVEMIEADALAIHLNPLQE----------AVQP------ 157 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHH---HHHHhcCCCcEEEeCcchHh----------hcCC------
Confidence 222334444 45444444322 444433 34455688999999876531 0011
Q ss_pred cccccccCccccccchhhHHHhhhccCccc-cH----HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCC
Q 017718 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA 254 (367)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg 254 (367)
..+.++ .| +++++.+++||++|++ .+.++|+.+.++|+|+|+|+|+||
T Consensus 158 ------------------------~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 158 ------------------------EGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred ------------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 112233 23 3778888999999998 789999999999999999999988
Q ss_pred CC--------------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 255 RQ--------------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 255 ~~--------------------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
+. .+++.++.+.|+++++.+. ++|||++|||+++.|++|+|++|||+|++|||||.++.
T Consensus 214 t~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~ 292 (326)
T cd02811 214 TSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAAL 292 (326)
T ss_pred CcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHh
Confidence 42 1336677888999887664 79999999999999999999999999999999999876
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 315 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 315 ~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
. |.+++.++++.+++||+.+|.++|++|++|++.
T Consensus 293 ~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 E-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 6 999999999999999999999999999999873
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=2e-38 Score=310.90 Aligned_cols=276 Identities=26% Similarity=0.384 Sum_probs=218.5
Q ss_pred HhccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCC--CC--
Q 017718 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS-- 113 (367)
Q Consensus 40 ~~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~--~~-- 113 (367)
...||+|+|+|+.|+ +.++|||+|+|+|+++++||+++||++++-...+.|.+++++|+++|+++++|+++. .+
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 347999999999998 788999999999999999999999998753333567899999999999999998853 11
Q ss_pred ----HHHHHhhCC-CceEEEEeecCCHHH-HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 114 ----VEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 114 ----~e~i~~~~~-~~~~~QLy~~~d~~~-~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
.+.+.+..| .|.+..|+....... .+++.+.++..+++++.++++++.. ...|
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------~~~p----------- 165 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------LVQP----------- 165 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------hcCC-----------
Confidence 122334444 556665554322112 1233444556788999999876531 0011
Q ss_pred ccCccccccchhhHHHhhhccCcccc-H----HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCCC---
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLS-W----KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ--- 256 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~-~----~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~~--- 256 (367)
..+.+++ | +++++.+++||++|++ .+.++|+.+.++|+|+|+|+|+||+.
T Consensus 166 -------------------~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ 226 (352)
T PRK05437 166 -------------------EGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAA 226 (352)
T ss_pred -------------------CCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence 1122331 2 3788888999999998 78999999999999999999998832
Q ss_pred ---------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHH
Q 017718 257 ---------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 321 (367)
Q Consensus 257 ---------------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v 321 (367)
.+++.++.+.|+++++.+ .++|||++|||+++.|++|+|++|||+|++||++++++...|.+++
T Consensus 227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v 305 (352)
T PRK05437 227 IENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAV 305 (352)
T ss_pred hhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHH
Confidence 145778899999998863 3799999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhhhcccceeecc
Q 017718 322 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 356 (367)
Q Consensus 322 ~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~ 356 (367)
.++++.+.+||+.+|..+|+++++||++..+...+
T Consensus 306 ~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 306 IELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSG 340 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecH
Confidence 99999999999999999999999999988776543
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=2.3e-37 Score=301.72 Aligned_cols=273 Identities=26% Similarity=0.377 Sum_probs=211.1
Q ss_pred hccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC--C---
Q 017718 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--S--- 113 (367)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~--~--- 113 (367)
+.||+|+|+|..|+ +++++||||+|+|+++++||+++||++++......+..++++|+++|+++++++++.. .
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 45999999999997 6789999999999999999999999877532234477999999999999999987521 1
Q ss_pred ---HHHHHhhCC-CceEEEEeecCCHH-HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccc
Q 017718 114 ---VEEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (367)
Q Consensus 114 ---~e~i~~~~~-~~~~~QLy~~~d~~-~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~ 188 (367)
...+.+..+ .|.+..|......+ ...+..+.++..+++++.++++++.. ...|
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~~~p------------ 158 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------LVQP------------ 158 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------ccCC------------
Confidence 112333234 45554443211111 13334444555678999999987531 0011
Q ss_pred cCccccccchhhHHHhhhccCccc-cH----HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCCC----
Q 017718 189 LGKMDEANDSGLAAYVAGQIDRSL-SW----KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ---- 256 (367)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~~---- 256 (367)
..++++ .| +++++.+++||++|.+ .+.+.|+.+.++|+|+|+|+|+||+.
T Consensus 159 ------------------~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 159 ------------------EGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred ------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 113333 23 2788888999999998 78999999999999999999998863
Q ss_pred --------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHH
Q 017718 257 --------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVR 322 (367)
Q Consensus 257 --------------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~ 322 (367)
.+++.++.+.|.++++ ...++|||++|||+++.|+.|+|++|||+|++||+++.++...|++++.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~ 299 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVI 299 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHH
Confidence 2346667788888876 2237999999999999999999999999999999999987767999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 323 RVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 323 ~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
++++.+.+||+.+|.++|+++++||++..+..
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~~ 331 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELKKVPLVI 331 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHccCCeEe
Confidence 99999999999999999999999999887643
No 17
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.96 E-value=1.2e-27 Score=230.57 Aligned_cols=256 Identities=19% Similarity=0.239 Sum_probs=190.9
Q ss_pred ccccceeeccccCC--CCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 017718 42 AFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (367)
Q Consensus 42 ~~~~i~l~pr~l~~--~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~- 118 (367)
.||+++|+|..++. .+++|++|+|+|++++.||++++|.. ..|..+|++|+++|...++.-+ ..|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 59999999999974 56999999999999999999999942 4689999999999988887542 445433
Q ss_pred ---hhCCCceEEEEeecCCHHHHHHHHHHHHHcCC--cEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccc
Q 017718 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (367)
Q Consensus 119 ---~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~--~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (367)
...+...+.-+-.+..++.. +.++...++|+ ++|+| |+... .
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~i--D~a~g----------h-------------------- 123 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITI--DIAHG----------H-------------------- 123 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCCC----------c--------------------
Confidence 22232233444444444443 33444555654 87766 54321 0
Q ss_pred cccchhhHHHhhhccCccccHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC------CCccc--hH
Q 017718 194 EANDSGLAAYVAGQIDRSLSWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPA--TI 264 (367)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~------~~~~~--~~ 264 (367)
.....+ ..+++|+.++ +||++|.+.+.++++.+.++|+|+|.+++|||++. ..+.+ .+
T Consensus 124 ---~~~~~e----------~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 124 ---SDSVIN----------MIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred ---hHHHHH----------HHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 000111 1348888886 88888889999999999999999999999999652 12345 44
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH------------------HHh-----hc------
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------YSL-----AA------ 315 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l------------------~~l-----~~------ 315 (367)
..+.++++.+ ++|||++|||+++.|++|+|++|||+||+|++|+ .-+ ..
T Consensus 191 ~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~ 268 (326)
T PRK05458 191 AALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKN 268 (326)
T ss_pred HHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccc
Confidence 5688888776 7999999999999999999999999999999997 111 01
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 316 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 316 -~G~~-------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
+|.+ .+.+++..+..+|+..|.++|++++.||+...++.
T Consensus 269 ~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~v~ 315 (326)
T PRK05458 269 VEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDYVI 315 (326)
T ss_pred cCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCEEE
Confidence 2333 48899999999999999999999999999754433
No 18
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.96 E-value=2.8e-27 Score=227.27 Aligned_cols=256 Identities=21% Similarity=0.243 Sum_probs=186.9
Q ss_pred ccccceeeccccCC--CCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 017718 42 AFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (367)
Q Consensus 42 ~~~~i~l~pr~l~~--~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~- 118 (367)
.||+++|+|..++. .+++|++|+|++++++.||++++|.. ..|..||++|+++|...++..+ +.|+..
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 69999999999975 57999999999999999999999942 4689999999999999888653 445432
Q ss_pred ---hhCCCceEEEEeecCCHHHHHHHHHHHHHcC--CcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccc
Q 017718 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (367)
Q Consensus 119 ---~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (367)
+..+....+-+-.+..++.. +.++...++| .+.+++ |+.. |+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah----------g~-------------------- 120 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH----------GH-------------------- 120 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc----------Cc--------------------
Confidence 22222222323333344433 3344445567 466554 4321 11
Q ss_pred cccchhhHHHhhhccCccccHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEcCCCCCCC--------CCccchH
Q 017718 194 EANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVPATI 264 (367)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs~~gg~~~--------~~~~~~~ 264 (367)
...+.. ..+++|+.++.|+++|+ +.+.++|+.+.++|||+|.|++++|+.. ..+.+.+
T Consensus 121 -------s~~~~~------~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l 187 (321)
T TIGR01306 121 -------SNSVIN------MIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 187 (321)
T ss_pred -------hHHHHH------HHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHH
Confidence 000000 24589999988866666 8999999999999999999998766531 1222356
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc---------
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------- 315 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~--------- 315 (367)
..+.+++++. ++|||+||||+++.|++|||++|||+||+|++|- +++..
T Consensus 188 ~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~ 265 (321)
T TIGR01306 188 AALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKN 265 (321)
T ss_pred HHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhccccccc
Confidence 7899998877 7999999999999999999999999999999882 11110
Q ss_pred -cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 316 -EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 316 -~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
+|. ..+.+++..+...|+..|.++|++++.||+...++.
T Consensus 266 ~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~~ 312 (321)
T TIGR01306 266 VEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYVI 312 (321)
T ss_pred ccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEEE
Confidence 111 128889999999999999999999999999775544
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.94 E-value=4.7e-25 Score=210.36 Aligned_cols=255 Identities=22% Similarity=0.278 Sum_probs=188.2
Q ss_pred ccccceeeccccC--CCCCCccceeEcCe-----eeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCH
Q 017718 42 AFSRILFRPRILI--DVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (367)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~st~i~g~-----~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~ 114 (367)
.||++.|+|+... .-+++|++++|..+ .+..|++-|.|--. ++..+|.+.+++|...++.- ..++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk--~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHK--HYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEee--CCCH
Confidence 6999999997543 44889999999744 78999999999544 47899999999999999864 3455
Q ss_pred HHHH----hhCCC-ceEEEEeecCCHHHHHHHHHHHHHc--CCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 115 EEVA----STGPG-IRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 115 e~i~----~~~~~-~~~~QLy~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
|+.. ...+. ....-+-.+..++. .+.++...++ +.+.|+| |+.. |+
T Consensus 81 e~~~~~v~~~~~~~~~~~~vsvG~~~~d-~er~~~L~~a~~~~d~ivi--D~Ah----------Gh-------------- 133 (343)
T TIGR01305 81 DEWKAFATNSSPDCLQNVAVSSGSSDND-LEKMTSILEAVPQLKFICL--DVAN----------GY-------------- 133 (343)
T ss_pred HHHHHHHHhhcccccceEEEEeccCHHH-HHHHHHHHhcCCCCCEEEE--ECCC----------Cc--------------
Confidence 5532 21221 11111122323332 3445555555 4777766 4321 11
Q ss_pred ccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc-----CCCCCCCCCcc
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLDYVP 261 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs-----~~gg~~~~~~~ 261 (367)
..++.. ..+|+|+.|+.+.++|+ +.++++|+.++++|||+|.|+ +|+++++++..
T Consensus 134 -------------s~~~i~------~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg 194 (343)
T TIGR01305 134 -------------SEHFVE------FVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVG 194 (343)
T ss_pred -------------HHHHHH------HHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCC
Confidence 001110 34599999987888888 899999999999999999998 78888888755
Q ss_pred -chHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc----
Q 017718 262 -ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---- 315 (367)
Q Consensus 262 -~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~---- 315 (367)
+.+++|++++++.++ ++|||+||||+++.|++|||++|||+||+|+.+. ++++.
T Consensus 195 ~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am 274 (343)
T TIGR01305 195 YPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAM 274 (343)
T ss_pred cCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHH
Confidence 899999999998876 7999999999999999999999999999997652 11110
Q ss_pred -------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 316 -------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 316 -------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|. ..+.+++..+...|+..|.++|..++.||+..
T Consensus 275 ~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 275 KKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred hhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 111 12888999999999999999999999999643
No 20
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.93 E-value=1.7e-24 Score=215.48 Aligned_cols=270 Identities=24% Similarity=0.240 Sum_probs=180.6
Q ss_pred CCccceeEcC-----eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeec
Q 017718 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY 132 (367)
Q Consensus 58 ~vd~st~i~g-----~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~ 132 (367)
.++.++++++ ..+..||+++||+++.+ .++...+++.++.+.|....+++. ..+.+++.... ....|+- .
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~--~~i~q~~-~ 133 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEG-GELPEEREGGG--DIIKQVA-S 133 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhh--heEEEec-C
Confidence 3444666654 45689999999997765 334567999999999999888864 45666664332 2445542 1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCC-CCchhHHhhhhcCCCC-ccccccccccccCccccc-cchhhHHHhhhccC
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEA-NDSGLAAYVAGQID 209 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~-~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 209 (367)
.......+.++. +++|-+-+.--. +| .|-.+|. |++.. + +.. .....++.++...+
T Consensus 134 ~~fGv~~~~~~~-----~~~ieik~~QGAkpg-------~gg~l~~~Kv~~e----i-----A~~r~~~~g~~~isp~~~ 192 (392)
T cd02808 134 GRFGVRPEYLNK-----ADAIEIKIGQGAKPG-------EGGHLPGEKVTEE----I-----AKIRGIPPGVDLISPPPH 192 (392)
T ss_pred CCCccCHHHccc-----CcEEEEEeccCCCCC-------CCCccccccCCHH----H-----HHHhCCCCCccccCCCCC
Confidence 111111112221 444444433111 00 0111221 11100 0 000 00011222333333
Q ss_pred cccc----H----HHHHhhcC-CCEEEEecCC--HHHHHHHHHcC-CcEEEEcCCCCCC--------CCCccchHHHHHH
Q 017718 210 RSLS----W----KWLQTITK-LPILVKGVLT--AEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEE 269 (367)
Q Consensus 210 ~~~~----~----~~l~~~~~-~Pv~vK~v~~--~~~a~~~~~~G-~d~i~vs~~gg~~--------~~~~~~~~~~l~~ 269 (367)
+++. | +++|+.++ +||++|++.. .+++..+.+.| +|+|+|+||+|.+ .+++.++...|++
T Consensus 193 ~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 193 HDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 4331 2 38899888 9999999964 66655555555 9999999996543 3467889999999
Q ss_pred HHHHh-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc----------------------------
Q 017718 270 VVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE---------------------------- 316 (367)
Q Consensus 270 i~~~~-----~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~---------------------------- 316 (367)
+++.+ ++++|||++|||+++.|++|+|++|||+|++||++++++.|.
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~ 352 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVE 352 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCc
Confidence 98765 247999999999999999999999999999999999988654
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 317 -GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 317 -G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
|.++|.++++.+.+||+.+|..+|++++++++++++.
T Consensus 353 ~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 353 GKAERVANYLKSLAEELRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhh
Confidence 6789999999999999999999999999999988764
No 21
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.93 E-value=2.7e-25 Score=217.82 Aligned_cols=287 Identities=21% Similarity=0.257 Sum_probs=181.9
Q ss_pred hccccceeecc-ccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCC----CCCCHH
Q 017718 41 NAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVE 115 (367)
Q Consensus 41 ~~~~~i~l~pr-~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~----~~~~~e 115 (367)
-.||+|.|+|. .-++.++|||++++.+++++.||+.|||++.+ +.+|+.+|+++|..-+++.. .....+
T Consensus 13 ~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~~ 86 (369)
T TIGR01304 13 YSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDPD 86 (369)
T ss_pred CCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCHH
Confidence 37999999995 55788999999999999999999999998875 78999999999996666531 112222
Q ss_pred HHH----hhCCC-------ceEEEEee-cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 116 EVA----STGPG-------IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 116 ~i~----~~~~~-------~~~~QLy~-~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
.+. ..... ....++|. ..+++.+.++++.+++++.. +-+.++ |. ...++.... ...+
T Consensus 87 ~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~---~~~e~a~~l------~eAG 155 (369)
T TIGR01304 87 PAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQ---NAREIAPIV------VKAG 155 (369)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-Cc---CHHHHHHHH------HHCC
Confidence 211 10000 00111211 23556666666666665411 112221 10 000010000 0000
Q ss_pred ccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC----
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---- 256 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---- 256 (367)
.+.+ ....+ -..+++... .-+|. .+++..++||+++++.+.++|+.+.++|+|+|.++.+|+..
T Consensus 156 ad~I---~ihgr--t~~q~~~sg----~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~ 226 (369)
T TIGR01304 156 ADLL---VIQGT--LVSAEHVST----SGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLV 226 (369)
T ss_pred CCEE---EEecc--chhhhccCC----CCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccc
Confidence 0000 00000 000111111 11343 56666799999988999999999999999999955444322
Q ss_pred CCCccchHHHHHHHHHHh-------cC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh----------
Q 017718 257 LDYVPATIMALEEVVKAT-------QG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE---------- 318 (367)
Q Consensus 257 ~~~~~~~~~~l~~i~~~~-------~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~---------- 318 (367)
+..+.+....+.++.++. ++ .+|||++|||+++.|++|+|++|||+||+|++|+.+..+.|.
T Consensus 227 lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~ 306 (369)
T TIGR01304 227 LGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAH 306 (369)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcC
Confidence 223567777887776442 22 499999999999999999999999999999999875443211
Q ss_pred -------------HH----HHHHH----------HHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 319 -------------KG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 319 -------------~~----v~~~i----------~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
.| +++++ .+|...|++.|..+|+.+++|+++..+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 307 PRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred ccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 12 44554 4688899999999999999999987654
No 22
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.93 E-value=1.6e-24 Score=212.89 Aligned_cols=284 Identities=20% Similarity=0.283 Sum_probs=182.7
Q ss_pred ccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCC----CCCCHH
Q 017718 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVE 115 (367)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~----~~~~~e 115 (367)
.||++.|+|. ++ +.+++|+++.+.++.++.||+++||.+.+ +..++.+++++|...+++.. ...+.+
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 6999999998 54 55789999999999999999999997764 77999999999986666521 122344
Q ss_pred HHHhh----CCC---ceEEEEe-ecCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCCchhHHhhhhcCCCCccccccccc
Q 017718 116 EVAST----GPG---IRFFQLY-VYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQG 186 (367)
Q Consensus 116 ~i~~~----~~~---~~~~QLy-~~~d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~~~~~~~~~p~~~~~~~~~~ 186 (367)
++... .+. ...-++| .+.+++.+.++++.+++++ +.+.+.. |. ...++.... ...+.+.
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~---V~v~vr~~~~---~~~e~a~~l------~eaGvd~ 157 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAG---VIVAVSLSPQ---RAQELAPTV------VEAGVDL 157 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCe---EEEEEecCCc---CHHHHHHHH------HHCCCCE
Confidence 43321 110 0001111 1345666666666666653 2222211 00 000000000 0000000
Q ss_pred cccCccccccch-hhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------C
Q 017718 187 LDLGKMDEANDS-GLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------Q 256 (367)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~ 256 (367)
+. . .+. ..+.|.. ..-+|. .+++..++||+++.+.+.++|+.+.++|||+|.+..++|+ .
T Consensus 158 I~---v---hgrt~~~~h~~----~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~ 227 (368)
T PRK08649 158 FV---I---QGTVVSAEHVS----KEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGV 227 (368)
T ss_pred EE---E---eccchhhhccC----CcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCccc
Confidence 00 0 000 0011111 111343 4444578999998899999999999999999999644442 1
Q ss_pred CCCccchHHHHHHHHHHhc--------CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc------------
Q 017718 257 LDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------ 316 (367)
Q Consensus 257 ~~~~~~~~~~l~~i~~~~~--------~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~------------ 316 (367)
...+.+.+..+.++++..+ .++|||++|||+++.|++|||++|||+||+|++|.-...+.
T Consensus 228 ~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~ 307 (368)
T PRK08649 228 LGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPH 307 (368)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCC
Confidence 2336778888888765421 15999999999999999999999999999999986533221
Q ss_pred -----Ch-------HHHHHHHH----------HHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 317 -----GE-------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 317 -----G~-------~~v~~~i~----------~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
|. ..+.+++. ++...|+..|.++|+++|.||++..++.
T Consensus 308 ~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 308 PSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 11 13777877 9999999999999999999999876653
No 23
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.91 E-value=4.3e-23 Score=200.64 Aligned_cols=255 Identities=24% Similarity=0.318 Sum_probs=187.0
Q ss_pred ccccceeecccc-CCCCCCccceeEcC-eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~g-~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|... .+.++||++|.|.+ ..++.||+.|||.+.+ +..++.+.+++|...++... .+.+++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~~--~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHRN--MSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeCC--CCHHHHHH
Confidence 599999999764 46788999999988 8899999999998764 67899999999987666532 34454432
Q ss_pred ---hCCCc-eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 120 ---TGPGI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 120 ---~~~~~-~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
....+ ...+.. +.+++ ..+.++.+.++|++.|+++.-.. ..
T Consensus 75 ~i~~vk~~l~v~~~~-~~~~~-~~~~~~~l~eagv~~I~vd~~~G---~~------------------------------ 119 (325)
T cd00381 75 EVRKVKGRLLVGAAV-GTRED-DKERAEALVEAGVDVIVIDSAHG---HS------------------------------ 119 (325)
T ss_pred HHHHhccCceEEEec-CCChh-HHHHHHHHHhcCCCEEEEECCCC---Cc------------------------------
Confidence 11222 222332 33333 34566677778999888754210 00
Q ss_pred cchhhHHHhhhccCcccc-HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------CCCCccchHHHH
Q 017718 196 NDSGLAAYVAGQIDRSLS-WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMAL 267 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~-~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~~~~~~~~~~~l 267 (367)
+...+ ++++|+..+ +||++..+.+.++|+.+.++|+|+|+++..+|. ....+.+.+..+
T Consensus 120 -------------~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i 186 (325)
T cd00381 120 -------------VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAV 186 (325)
T ss_pred -------------HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHH
Confidence 00011 237777664 889888889999999999999999999543222 134577889999
Q ss_pred HHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc------------------------------
Q 017718 268 EEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------------------------ 316 (367)
Q Consensus 268 ~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~------------------------------ 316 (367)
.++.+.+.. ++|||++|||+++.|++|+|++||++||+||.|+-...+.
T Consensus 187 ~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~ 266 (325)
T cd00381 187 ADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDR 266 (325)
T ss_pred HHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCcccc
Confidence 988876643 6999999999999999999999999999999885321110
Q ss_pred ------------Ch-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 317 ------------GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 317 ------------G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
|. ..+.+++..+...|+..|.++|+.+|.||+....
T Consensus 267 ~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 267 YFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred ccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 10 1388899999999999999999999999997643
No 24
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.91 E-value=1.3e-22 Score=195.43 Aligned_cols=235 Identities=23% Similarity=0.325 Sum_probs=168.7
Q ss_pred cceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-C--------------------C------CCCC
Q 017718 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-S--------------------W------STSS 113 (367)
Q Consensus 61 ~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~--------------------~------~~~~ 113 (367)
++|+|+|.++++||++||...+. +....+.+.+.|..+++. | + .+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 47899999999999999943211 223344455568887765 1 1 1112
Q ss_pred HHH----HHhh---CCCceEEEEeecCCHHHHHHHHHHHHHcC--CcEEEEecCCCCCCchhHHhhhhcCCCCccccccc
Q 017718 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (367)
Q Consensus 114 ~e~----i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~ 184 (367)
.+. +... .+.|..+||+ ..+.+.+.+.++.+++++ ++++.+|+.||....| +.
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~------g~----------- 136 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGG------GI----------- 136 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCC------cc-----------
Confidence 222 2111 1247899997 678888888999998863 9999999999974110 00
Q ss_pred cccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEcCC-CCCC
Q 017718 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQ 256 (367)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs~~-gg~~ 256 (367)
.+.. ++++.+ +++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .++.
T Consensus 137 ------------------~l~~--~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 137 ------------------AIGQ--DPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred ------------------cccc--CHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0000 222322 3888888999999998654 4478899999999999874 2211
Q ss_pred C------------C---Cccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 257 L------------D---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 257 ~------------~---~~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
. . .+++ .++.+.++++.+ ++|||++|||++++|+.++|.+|||+||+||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 1 1 1222 346777777766 699999999999999999999999999999999862 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
.++..++++|..+|+..|+++++|+.+.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3788999999999999999999999864
No 25
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.91 E-value=6.4e-22 Score=192.60 Aligned_cols=238 Identities=20% Similarity=0.247 Sum_probs=169.0
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCC---------------------------
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------- 111 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~--------------------------- 111 (367)
|++|+++|.++++||++|.-+... +....+.+...|..+++. |...
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSR------NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCC------CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 689999999999999998643322 344555577888776652 2110
Q ss_pred -------CCHH----HHHhh---CCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCC
Q 017718 112 -------SSVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (367)
Q Consensus 112 -------~~~e----~i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~ 177 (367)
..++ ++.+. ...|.+.|+. ..+.+...+.+++++++|++++.+|+.||.. + |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~--~----------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPT--D----------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC--C----------C-
Confidence 0111 22221 1256788986 5677777889999999999999999998531 0 0
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCcccc-HHHHHhhcCCCEEEEecCC----HHHHHHHHHcCCcEEEEcCC
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-WKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNH 252 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~l~~~~~~Pv~vK~v~~----~~~a~~~~~~G~d~i~vs~~ 252 (367)
+. . +.... +.-.. .+++++.+++||++|+..+ .+.++.+.++|+|+|+++|+
T Consensus 141 ~~--~--------------g~~~~-------~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 141 DI--S--------------GAEVE-------QRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred Cc--c--------------cchHH-------HHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 00 0 00000 00011 1378888899999999854 35688899999999999996
Q ss_pred CC-CCCC---------C---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 253 GA-RQLD---------Y---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 253 gg-~~~~---------~---~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
.. ...+ + |+ -.++.+.++++.+ ++|||++|||+|++|+.++|.+|||+||+||++++
T Consensus 198 ~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~---- 271 (325)
T cd04739 198 FYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR---- 271 (325)
T ss_pred cCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----
Confidence 42 1111 1 11 2345666666655 79999999999999999999999999999999987
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 316 EGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 316 ~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 272 ~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 272 HGPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred cCch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 3664 778899999999999999999999984
No 26
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.90 E-value=1e-21 Score=189.43 Aligned_cols=236 Identities=21% Similarity=0.262 Sum_probs=174.2
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC--------------------------C
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~--------------------------~ 112 (367)
|++|+++|+++++||++|+-... .+..+++.+.+.|..+++ .|... .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999983222 244678888888888765 33311 1
Q ss_pred CHHH----HHhh---CCCceEEEEeecCCHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhhhcCCCCccccccc
Q 017718 113 SVEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (367)
Q Consensus 113 ~~e~----i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~ 184 (367)
..+. +.+. ...|..+||. ..+.+...+.+++++++| +++|.+|+.||....- +. .
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g------g~------~---- 137 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG------GM------A---- 137 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC------cc------c----
Confidence 1222 2221 1257889986 567888899999999999 9999999999973100 00 0
Q ss_pred cccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEcCCC-CCC
Q 017718 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQ 256 (367)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs~~g-g~~ 256 (367)
+. .++.+.+ +++|+.+++||++|+..+. +.++.+.++|+|+|+++|.. |..
T Consensus 138 -------------------~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 138 -------------------FG--TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred -------------------cc--cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 00 0223322 3888888999999998654 34788999999999997731 110
Q ss_pred --C-------------CCc----cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 257 --L-------------DYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 257 --~-------------~~~----~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
. ..+ +..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++ +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~ 269 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----D 269 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----C
Confidence 0 011 22567888888877 79999999999999999999999999999999986 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+ .+++.++++++.+|...|+++++|+.+.
T Consensus 270 P----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 270 P----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred c----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4 3788899999999999999999999864
No 27
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.3e-22 Score=195.10 Aligned_cols=247 Identities=26% Similarity=0.316 Sum_probs=190.5
Q ss_pred eEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHH--hhC--CCceEEEEeec
Q 017718 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVA--STG--PGIRFFQLYVY 132 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~~~~------~~e~i~--~~~--~~~~~~QLy~~ 132 (367)
.+....+..++++|||.+.+ |.++++.|+++|. ..++|+|.+. +-+... ... ..|..+||. +
T Consensus 3 ~~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g 75 (323)
T COG0042 3 KIGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-G 75 (323)
T ss_pred ccccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-C
Confidence 34567788999999998876 8899999999999 8889988432 111111 111 267899998 7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.|++.+.+.++.+++.|++.|+||++||++ +++.. +.++.++. +|++
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~~----------------g~Ga~Ll~--~p~l 122 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVKG----------------GAGAALLK--NPEL 122 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcCC----------------CcchhhcC--CHHH
Confidence 899999999999999999999999999984 11111 11234444 4444
Q ss_pred --cH-HHHHhhcC-CCEEEEecCC--------HHHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHhcCCC
Q 017718 213 --SW-KWLQTITK-LPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 213 --~~-~~l~~~~~-~Pv~vK~v~~--------~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
.+ +.+++.++ +||.||.... .+.++.+.++|++.++| ||.+ +.+.++..++.+.++++.++. +
T Consensus 123 v~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~~-i 199 (323)
T COG0042 123 LAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVPS-I 199 (323)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCCC-C
Confidence 33 38888884 9999999832 24688999999999999 6665 566778899999999999843 9
Q ss_pred cEEEecCCCCHHHHHHHHH-cCCCEEEech-----HHHHHh---hccCh---HHHHHHHHHHHHHHHHHHHHhCCCChhh
Q 017718 279 PVFLDGGVRRGTDVFKALA-LGASGIFIGR-----PVVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKE 346 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~-lGAd~V~ig~-----~~l~~l---~~~G~---~~v~~~i~~l~~el~~~m~~~G~~si~~ 346 (367)
|||++|+|.+.+|+.+.|. .|+|+||+|| |+++.. ...|+ ....+.++.+..+++......|...+..
T Consensus 200 pvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 279 (323)
T COG0042 200 PVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRR 279 (323)
T ss_pred eEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 9999999999999999999 6899999999 566652 12343 4567788899999999999999777888
Q ss_pred hccccee
Q 017718 347 ITRDHIV 353 (367)
Q Consensus 347 l~~~~l~ 353 (367)
++++...
T Consensus 280 ~r~h~~~ 286 (323)
T COG0042 280 LRKHLGY 286 (323)
T ss_pred HHHHHHH
Confidence 8876543
No 28
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.90 E-value=4.4e-22 Score=193.37 Aligned_cols=245 Identities=18% Similarity=0.207 Sum_probs=178.5
Q ss_pred eEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCC-HH---H----HHhh--CCCceEEEEeecC
Q 017718 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-VE---E----VAST--GPGIRFFQLYVYK 133 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~-~e---~----i~~~--~~~~~~~QLy~~~ 133 (367)
+|.+..++.|+++|||++.+ |.++++.|.++|..+++++|-+.. +. + .... .+.+..+||+ +.
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 35667889999999998876 889999999999999988874331 10 0 1111 1256779997 78
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
|++.+.+.++++++.|++.|.+|++||+. ++..++ . ++.+.. ++++
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~~~g------------~----Gs~ll~--~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK---------------KVNRKL------------A----GSALLQ--YPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHcCCC------------c----ccHHhc--CHHHH
Confidence 99999999999999999999999999973 011010 1 112232 4443
Q ss_pred -cH-HHHHhhcCCCEEEEecC----C----HHHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHhcCCCcE
Q 017718 213 -SW-KWLQTITKLPILVKGVL----T----AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 213 -~~-~~l~~~~~~Pv~vK~v~----~----~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~~v 280 (367)
.+ +.+++.+++||.+|... + .+.++.+.++|+|+|+++ |++ +...++..++.+.++++.+ ++||
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh--~rt~~~~~~G~a~~~~i~~ik~~~--~iPV 197 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIH--GRTRACLFNGEAEYDSIRAVKQKV--SIPV 197 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEe--cCccccccCCCcChHHHHHHHHhc--CCcE
Confidence 22 37788889999999962 1 245778999999999994 443 4556777899999999887 7999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEEechH-----HHHHhhc----cC----hHHHHHHHHHHHHHHHHHHHHhCCC-Chh
Q 017718 281 FLDGGVRRGTDVFKALA-LGASGIFIGRP-----VVYSLAA----EG----EKGVRRVLEMLREEFELAMALSGCR-SLK 345 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~-lGAd~V~ig~~-----~l~~l~~----~G----~~~v~~~i~~l~~el~~~m~~~G~~-si~ 345 (367)
|++|||.+++|+.+++. .|||+||+||+ |+|.... .| +....+.++.+.++++......|.. .+.
T Consensus 198 I~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (321)
T PRK10415 198 IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYR 277 (321)
T ss_pred EEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHH
Confidence 99999999999999998 69999999994 4553221 13 1234567778888888888877753 466
Q ss_pred hhcccce
Q 017718 346 EITRDHI 352 (367)
Q Consensus 346 ~l~~~~l 352 (367)
+++++.-
T Consensus 278 ~~rk~~~ 284 (321)
T PRK10415 278 IARKHVS 284 (321)
T ss_pred HHHHHHH
Confidence 6666543
No 29
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.90 E-value=8.4e-22 Score=191.21 Aligned_cols=256 Identities=24% Similarity=0.333 Sum_probs=174.7
Q ss_pred ccccceeecccc---CCCCCCccceeE-cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017718 42 AFSRILFRPRIL---IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (367)
Q Consensus 42 ~~~~i~l~pr~l---~~~~~vd~st~i-~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i 117 (367)
.||++.|+|... +...++|+++.+ -+.+++.||+-|||...+ |..+|.+.+++|...++.-. .++|+.
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~~--~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHRN--MSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEESS--SCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecCC--CCHHHH
Confidence 599999999774 455566666556 689999999999996543 78999999999988888543 454432
Q ss_pred H-------hhCC-------CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 118 A-------STGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 118 ~-------~~~~-------~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
. ...| ....+-...+..++ ..+.++...++|++.|+| |+.. ++
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-~~er~~~L~~agvD~ivI--D~a~----------g~---------- 132 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-DFERAEALVEAGVDVIVI--DSAH----------GH---------- 132 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-HHHHHHHHHHTT-SEEEE--E-SS----------TT----------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCHH-HHHHHHHHHHcCCCEEEc--cccC----------cc----------
Confidence 2 1111 12222222222221 134455566789999887 3321 11
Q ss_pred ccccccCccccccchhhHHHhhhccCccccHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------ 256 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------ 256 (367)
.+++.. ..+++|+.++ +||++..+.+.+.++.++++|||+|.|.-.+|.-
T Consensus 133 -----------------s~~~~~------~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v 189 (352)
T PF00478_consen 133 -----------------SEHVID------MIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREV 189 (352)
T ss_dssp -----------------SHHHHH------HHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHH
T ss_pred -----------------HHHHHH------HHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccc
Confidence 001110 2448888885 9999999999999999999999999996444431
Q ss_pred CCCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH-------------------------
Q 017718 257 LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------------- 310 (367)
Q Consensus 257 ~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l------------------------- 310 (367)
...|.|.+.++.+++++..+ .+|||+||||+++.|++|||++|||+||+|+.|-
T Consensus 190 ~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS 269 (352)
T PF00478_consen 190 TGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGS 269 (352)
T ss_dssp HSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTS
T ss_pred cccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEeccccc
Confidence 23467899999999887653 7999999999999999999999999999999771
Q ss_pred -HHhhc------------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 311 -YSLAA------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 311 -~~l~~------------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
.++.. +|. ..+.+++..|...|+..|.++|..+|.||+...
T Consensus 270 ~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 270 LGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp HHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred HHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 11100 111 138899999999999999999999999999764
No 30
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.89 E-value=1.7e-21 Score=192.47 Aligned_cols=270 Identities=21% Similarity=0.290 Sum_probs=187.0
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|... ...+++|++|.+. .+.+..||+-|||...+ +..++.+.+++|...+++. ..++|++.+
T Consensus 11 tfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~~ 82 (404)
T PRK06843 11 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQRK 82 (404)
T ss_pred CccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHHH
Confidence 699999999754 3557899998885 57789999999997654 6789999999998888863 355665432
Q ss_pred hC------C--Cce------------------EE------------------------EEe----ecCCHHHHHHHHHHH
Q 017718 120 TG------P--GIR------------------FF------------------------QLY----VYKDRNVVAQLVRRA 145 (367)
Q Consensus 120 ~~------~--~~~------------------~~------------------------QLy----~~~d~~~~~~~l~ra 145 (367)
.. . .+. .+ ||+ .+..++ ..+.++.+
T Consensus 83 eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~-~~~~v~~l 161 (404)
T PRK06843 83 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDID-TIERVEEL 161 (404)
T ss_pred HHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHH-HHHHHHHH
Confidence 10 0 000 00 111 111222 44566666
Q ss_pred HHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc-HHHHHhhc-CC
Q 017718 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-WKWLQTIT-KL 223 (367)
Q Consensus 146 ~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~l~~~~-~~ 223 (367)
.++|++.|+| |+... . + ....+ ++++|+.+ ++
T Consensus 162 v~aGvDvI~i--D~a~g----------~--~--------------------------------~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 162 VKAHVDILVI--DSAHG----------H--S--------------------------------TRIIELVKKIKTKYPNL 195 (404)
T ss_pred HhcCCCEEEE--ECCCC----------C--C--------------------------------hhHHHHHHHHHhhCCCC
Confidence 6788887766 43210 0 0 00012 34888887 68
Q ss_pred CEEEEecCCHHHHHHHHHcCCcEEEEcCCCC-----CCCC-CccchHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHH
Q 017718 224 PILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLD-YVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKAL 296 (367)
Q Consensus 224 Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~~~via~GGI~~~~dv~kal 296 (367)
+|+++.+.+.++|+.+.++|+|+|.++...| +..+ .+.+.+..+.++.+.+. ..+|||++|||+++.|++|||
T Consensus 196 ~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KAL 275 (404)
T PRK06843 196 DLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAI 275 (404)
T ss_pred cEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH
Confidence 9999999999999999999999999864333 3333 35677888777766543 279999999999999999999
Q ss_pred HcCCCEEEechHHHH--------------------Hhhc-------------------------cChH-------HHHHH
Q 017718 297 ALGASGIFIGRPVVY--------------------SLAA-------------------------EGEK-------GVRRV 324 (367)
Q Consensus 297 ~lGAd~V~ig~~~l~--------------------~l~~-------------------------~G~~-------~v~~~ 324 (367)
++||++||+|++|.- +++. +|.+ .+.++
T Consensus 276 alGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~ 355 (404)
T PRK06843 276 AAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDI 355 (404)
T ss_pred HcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCHHHH
Confidence 999999999998831 1110 0111 18889
Q ss_pred HHHHHHHHHHHHHHhCCCChhhhccc-ceeeccCCCCCCCCCC
Q 017718 325 LEMLREEFELAMALSGCRSLKEITRD-HIVTEWDASLPRPVPR 366 (367)
Q Consensus 325 i~~l~~el~~~m~~~G~~si~~l~~~-~l~~~~~~~~~~~~~~ 366 (367)
+..|...|+..|.++|+.+|.||+.. ........+....-||
T Consensus 356 ~~~l~gglrs~m~y~Ga~~i~el~~~a~fv~~t~~~~~E~~~h 398 (404)
T PRK06843 356 LTQLKGGLMSGMGYLGAATISDLKINSKFVKISHSSLKESHPH 398 (404)
T ss_pred HHHHHHHHHHHhhccCCCcHHHHHhcCeEEEEchhhhhccCCC
Confidence 99999999999999999999999843 3333334444444444
No 31
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.89 E-value=2.5e-21 Score=189.28 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=167.4
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCC----------------------------
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~---------------------------- 110 (367)
|++|+++|.+|++||++|.-+... +....+.+.+.|...++. |..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999988854432 233344477777776552 211
Q ss_pred -------CCCHHHHH-------hhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCC
Q 017718 111 -------TSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (367)
Q Consensus 111 -------~~~~e~i~-------~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p 176 (367)
+..+++.. +....|.+.|+. ..+.+...+++++++++|++++.+|+.||....
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~-g~~~~e~~~~a~~~~~agad~ielN~scpp~~~------------ 142 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLN-GSSAGGWVDYARQIEQAGADALELNIYYLPTDP------------ 142 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC------------
Confidence 01122111 111257888986 456667778899999999999999999864200
Q ss_pred CccccccccccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCC----HHHHHHHHHcCCcEEEE
Q 017718 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIV 249 (367)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~----~~~a~~~~~~G~d~i~v 249 (367)
. .. +.. .+...| +++++.+++||++|.... .+.++.+.++|+|+|++
T Consensus 143 -~--~~--------------g~~---------~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 143 -D--IS--------------GAE---------VEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred -C--Cc--------------ccc---------HHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 0 00 000 001112 378888899999998754 35578899999999999
Q ss_pred cCCCCC-CC---------CCc---c----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 250 SNHGAR-QL---------DYV---P----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 250 s~~gg~-~~---------~~~---~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+|+... .. .++ + ..++.+.++++.+ ++|||++|||+|++|+.|+|.+|||+||+||++++
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~- 273 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR- 273 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh-
Confidence 886321 11 111 1 1345566666655 79999999999999999999999999999999987
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 313 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 313 l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
+|+ .+++.+.+||+.+|...|+++++|+++..
T Consensus 274 ---~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 274 ---HGP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred ---hCc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 355 37889999999999999999999999854
No 32
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.89 E-value=6.9e-21 Score=183.10 Aligned_cols=234 Identities=21% Similarity=0.256 Sum_probs=168.1
Q ss_pred ceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCCC--------------------------CH
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------SV 114 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~--------------------------~~ 114 (367)
+|+++|.++++||++|+ |..+ ....+++.+...|..+++. |.+.. ..
T Consensus 1 ~~~~~G~~~~nP~~~aa-g~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILAS-GTFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECC-CCCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 57899999999999995 2111 1335566555554777653 32111 11
Q ss_pred HH----HHhh---CCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 115 EE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 115 e~----i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
++ +.+. ...|..+||. ..+.+...+.+++++++|++++.+|+.||....|- -
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g------~-------------- 133 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGG------M-------------- 133 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCc------c--------------
Confidence 22 2221 1257889997 56788888999999999999999999999741110 0
Q ss_pred ccCccccccchhhHHHhhhccCcccc---HHHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEcCC-CCCCC--
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQL-- 257 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs~~-gg~~~-- 257 (367)
.+. .++.+. .+++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .|+..
T Consensus 134 ---------------~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 134 ---------------AFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred ---------------ccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 000 022222 23788888999999987543 4478899999999999874 22111
Q ss_pred -------------CCcc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHH
Q 017718 258 -------------DYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 320 (367)
Q Consensus 258 -------------~~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~ 320 (367)
..++ ..++.+.++++.+ ++|||++|||.+++|+.++|++|||+|++||++++ ++
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch--
Confidence 1122 2457788888776 79999999999999999999999999999999986 34
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 321 VRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 321 v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
.+++.++++|.++|+..|+++++|+++.
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3778999999999999999999999863
No 33
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.88 E-value=9e-21 Score=183.27 Aligned_cols=220 Identities=19% Similarity=0.205 Sum_probs=157.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcC-CceeecCCCCC--------CHHHHHh------hC--CCceEEEEeecCC
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TG--PGIRFFQLYVYKD 134 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G-~~~~vs~~~~~--------~~e~i~~------~~--~~~~~~QLy~~~d 134 (367)
+|+++|||++.+ |.++++.|.+.| ..+++++|-+. ....+.+ .. ..|..+||+ +.|
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 589999999886 889999999999 78889988331 1111111 11 268999998 789
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--
Q 017718 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-- 212 (367)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-- 212 (367)
++.+.+.++++++.|++.|.||++||++ +++.. +. ++.++. ++.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~~~------------g~----Gs~Ll~--~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVNGS------------GG----GATLLK--DPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHhcC------------CC----chHhhc--CHHHHH
Confidence 9999999999999999999999999973 11100 01 112232 3443
Q ss_pred cH-HHHHhhc--CCCEEEEecCC-------HHHHHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEE
Q 017718 213 SW-KWLQTIT--KLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~-~~l~~~~--~~Pv~vK~v~~-------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~vi 281 (367)
.+ +.+++.+ ++||.+|.... .+.++.+.++|+|.|+|++....+.+.+++ .++.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 22 3777777 49999998632 244788999999999994322224445654 789999999887 79999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEech-----HHHHHhhccCh--HHHHHHHHHHHHHHH
Q 017718 282 LDGGVRRGTDVFKALA-LGASGIFIGR-----PVVYSLAAEGE--KGVRRVLEMLREEFE 333 (367)
Q Consensus 282 a~GGI~~~~dv~kal~-lGAd~V~ig~-----~~l~~l~~~G~--~~v~~~i~~l~~el~ 333 (367)
++|||.|++|+.+++. .|||+||||| ||+|.....|. ....+.++.+.++++
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~ 258 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTR 258 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999997 6899999999 55665433332 223455555665554
No 34
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.88 E-value=1.2e-20 Score=186.12 Aligned_cols=248 Identities=20% Similarity=0.277 Sum_probs=174.2
Q ss_pred CCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CC---C----------------------
Q 017718 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW---S---------------------- 110 (367)
Q Consensus 57 ~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~---~---------------------- 110 (367)
+..|++|+|+|+++++||++|.-... .+....+.+.+.|...++. |. .
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~t------~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~ 80 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPPG------TNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAK 80 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccCC------CCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccc
Confidence 46789999999999999999984332 2445555656668776652 11 0
Q ss_pred -C------C------CHH----HHH---hhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHh
Q 017718 111 -T------S------SVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (367)
Q Consensus 111 -~------~------~~e----~i~---~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~ 169 (367)
. . .++ ++. +..+ .|.+..+....+.+...+++++++++|++++.+|+.||....
T Consensus 81 ~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~----- 155 (385)
T PLN02495 81 GRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMP----- 155 (385)
T ss_pred cccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-----
Confidence 0 0 122 221 1223 367777754467888899999999999999999999997310
Q ss_pred hhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH----HHHHHHHHc
Q 017718 170 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA----EDARIAVQA 242 (367)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~ 242 (367)
.+.. +..+.. +++. .. +++++.+++||++|+..+. +.|+.+.++
T Consensus 156 -----------~r~~----------------g~~~gq--~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~ 206 (385)
T PLN02495 156 -----------ERKM----------------GAAVGQ--DCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKS 206 (385)
T ss_pred -----------cCcc----------------chhhcc--CHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHh
Confidence 0000 000111 2222 22 3788888999999999654 447889999
Q ss_pred CCcEEEEcCCCC--CCC----------------CCc---cc----hHHHHHHHHHHhc----CCCcEEEecCCCCHHHHH
Q 017718 243 GAAGIIVSNHGA--RQL----------------DYV---PA----TIMALEEVVKATQ----GRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 243 G~d~i~vs~~gg--~~~----------------~~~---~~----~~~~l~~i~~~~~----~~~~via~GGI~~~~dv~ 293 (367)
|+|+|++.|+-. ..+ .+| ++ .+..+.++++.++ .++|||+.|||.+++|++
T Consensus 207 Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~ 286 (385)
T PLN02495 207 GCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAA 286 (385)
T ss_pred CCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHH
Confidence 999999998532 111 111 11 2344555666553 258999999999999999
Q ss_pred HHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 294 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
++|.+||++||+++.+++ +|+. +++.+.+||+.+|...|+++++|+++..+
T Consensus 287 e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 287 EFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred HHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 999999999999999886 4764 77889999999999999999999997654
No 35
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.88 E-value=4.2e-21 Score=185.95 Aligned_cols=234 Identities=19% Similarity=0.263 Sum_probs=163.1
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHHhhCC--CceEEEEeecCCHHHHHHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ 143 (367)
|+++|||.+.+ |.++++.|+++|. .+++++|.+. ...+.....+ .|..+||+ +.|++.+.+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 79999999876 8899999999998 7888888332 1122222223 68999998 789999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhh
Q 017718 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTI 220 (367)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~ 220 (367)
.+++.|++.|+||++||+.- +... +.+..++. ++++ ++ +.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~---------------v~~~----------------g~Gs~Ll~--~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR---------------VQNG----------------NFGACLMG--NADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH---------------hCCC----------------CeehHhhc--CHHHHHHHHHHHHHH
Confidence 99999999999999999740 0000 01122333 3443 22 378888
Q ss_pred cCCCEEEEecCC----------HHHHHHHHHcCCcEEEEcCCCCCC---CCC-------ccchHHHHHHHHHHhcCCCcE
Q 017718 221 TKLPILVKGVLT----------AEDARIAVQAGAAGIIVSNHGARQ---LDY-------VPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 221 ~~~Pv~vK~v~~----------~~~a~~~~~~G~d~i~vs~~gg~~---~~~-------~~~~~~~l~~i~~~~~~~~~v 280 (367)
+++||.+|.... .+.++.+.++|++.|+| ||++. ... .+..++.+.++++.+. ++||
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itv--HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipV 198 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIV--HARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTI 198 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEE--eCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcE
Confidence 899999999742 12378889999999999 66542 111 2336778888877653 6999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEech-----HHHHHhhc----cC---hHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGR-----PVVYSLAA----EG---EKGVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~-----~~l~~l~~----~G---~~~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
|++|||.|.+|+.+++. |||+||||| ||+|.... +| .....+.++.+.++++..... ...+.+++
T Consensus 199 i~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~r 275 (318)
T TIGR00742 199 EINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHIT 275 (318)
T ss_pred EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHH
Confidence 99999999999999996 999999999 45554321 12 112345566666666654333 23556666
Q ss_pred ccce
Q 017718 349 RDHI 352 (367)
Q Consensus 349 ~~~l 352 (367)
++..
T Consensus 276 k~~~ 279 (318)
T TIGR00742 276 RHLL 279 (318)
T ss_pred HHHH
Confidence 5543
No 36
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.87 E-value=1.1e-20 Score=183.56 Aligned_cols=243 Identities=21% Similarity=0.252 Sum_probs=172.3
Q ss_pred cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC-C-------HHHHHhhCC--CceEEEEeecCCH
Q 017718 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-------VEEVASTGP--GIRFFQLYVYKDR 135 (367)
Q Consensus 66 ~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~-~-------~e~i~~~~~--~~~~~QLy~~~d~ 135 (367)
.+..+..|+++|||.+.+ +.++++.|+++|..+++++|-+. + ..+.....+ .|..+||. +.++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCH
Confidence 567889999999998875 78999999999999888887321 1 111222222 57889997 7899
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c
Q 017718 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S 213 (367)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~ 213 (367)
+.+.+.+++++++|+++|.+|++||.. +|. ..+ . ++.+.. ++.+ .
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~--------------~~~------------~----Gs~l~~--~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KIT--------------KKG------------A----GSALLR--DPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-Hhc--------------CCC------------c----cchHhC--CHHHHHH
Confidence 999999999999999999999999952 211 000 0 111111 2333 2
Q ss_pred H-HHHHhhcCCCEEEEecC--------CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 214 W-KWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 214 ~-~~l~~~~~~Pv~vK~v~--------~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
+ +.+++.+++||.+|... ..+.++.+.++|+|+|++++....+...++..++.+.++++.+ ++|||++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 2 37888889999999852 1355788999999999995422122334567888999998877 69999999
Q ss_pred CCCCHHHHHHHHH-cCCCEEEechHHHH-----Hhh----ccCh----HHHHHHHHHHHHHHHHHHHHhCCC-Chhhhcc
Q 017718 285 GVRRGTDVFKALA-LGASGIFIGRPVVY-----SLA----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITR 349 (367)
Q Consensus 285 GI~~~~dv~kal~-lGAd~V~ig~~~l~-----~l~----~~G~----~~v~~~i~~l~~el~~~m~~~G~~-si~~l~~ 349 (367)
||.+++|+.+++. .|||+||+||+++. .-. ..|+ ....+.++.+.++++...+..|.. .+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999994 79999999996653 211 1121 134456677777777777777642 3555554
Q ss_pred c
Q 017718 350 D 350 (367)
Q Consensus 350 ~ 350 (367)
+
T Consensus 280 ~ 280 (319)
T TIGR00737 280 H 280 (319)
T ss_pred H
Confidence 4
No 37
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.87 E-value=9.2e-21 Score=182.60 Aligned_cols=224 Identities=23% Similarity=0.305 Sum_probs=154.2
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCCC--------------------------
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~-------------------------- 112 (367)
|++|+++|+++++||++|+-... .+....+.+...|..+++. |....
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPT------TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCC------CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 68999999999999999993222 1344555555557765542 21110
Q ss_pred -------CHHH----HH---hhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCC
Q 017718 113 -------SVEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (367)
Q Consensus 113 -------~~e~----i~---~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~ 177 (367)
.++. +. ...+ .|...|++-..+++.+.+.++++++.|++++.+|+.||..-.+
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~------------ 142 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE------------ 142 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC------------
Confidence 0121 11 1122 5788999733388888899999999999999999999974110
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEc
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 250 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs 250 (367)
++. +..+.. +++. ++ +++++.+++||++|+..+. +.++.+.++|+|+|+++
T Consensus 143 ----~~~----------------G~~l~~--~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 143 ----RGM----------------GAAVGQ--DPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ----CCC----------------chhhcc--CHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 000 001111 2222 22 3788888999999998654 66888999999999988
Q ss_pred CCCCC---------------------CCCCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 251 NHGAR---------------------QLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 251 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
|+... +..+|++ +++.+.++++.+..++|||++|||++++|+.++|.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75311 1122333 4788999988876579999999999999999999999999999
Q ss_pred chHHHHHhhccChHHHHHHHHHHHHH
Q 017718 306 GRPVVYSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 306 g~~~l~~l~~~G~~~v~~~i~~l~~e 331 (367)
||.+++ +|+. ++..+.+|
T Consensus 281 ~ta~~~----~g~~----~~~~i~~~ 298 (299)
T cd02940 281 CTAVMN----QGFT----IVDDMCTG 298 (299)
T ss_pred ceeecc----cCCc----HHHHHhhh
Confidence 998876 4664 44445444
No 38
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.87 E-value=1.8e-20 Score=179.05 Aligned_cols=259 Identities=19% Similarity=0.240 Sum_probs=182.0
Q ss_pred ccccceeeccccC--CCCCCccceeEc-----CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCH
Q 017718 42 AFSRILFRPRILI--DVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (367)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~st~i~-----g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~ 114 (367)
.||++.|+|+... .-+++|++.+|. ...+..|++-|+|--. ++..+|.+.+++|...++.- ..++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk--~~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHK--HYSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEec--CCCH
Confidence 7999999997553 336899987765 4556799999999544 47899999999999998853 3456
Q ss_pred HHHHh----hCCC-ceEEEEeecCCHHHHHHHHHHHHH--cCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 115 EEVAS----TGPG-IRFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 115 e~i~~----~~~~-~~~~QLy~~~d~~~~~~~l~ra~~--~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
|+..+ ..+. ...+-+-.+..++.. +.++...+ +|++.|+| |+.. |++
T Consensus 82 e~~~~fv~~~~~~~~~~~~vavG~~~~d~-er~~~L~~~~~g~D~ivi--D~Ah----------Ghs------------- 135 (346)
T PRK05096 82 EEWAAFVNNSSADVLKHVMVSTGTSDADF-EKTKQILALSPALNFICI--DVAN----------GYS------------- 135 (346)
T ss_pred HHHHHHHHhccccccceEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCC----------CcH-------------
Confidence 65332 1211 111112223333333 33444444 58888876 4321 110
Q ss_pred ccCccccccchhhHHHhhhccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CC--CCc
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QL--DYV 260 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~--~~~ 260 (367)
.++.. ..+++|+.+ +++|+...+.+.+.++.++++|||+|.|.-..|. +. ..|
T Consensus 136 --------------~~~i~------~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG 195 (346)
T PRK05096 136 --------------EHFVQ------FVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVG 195 (346)
T ss_pred --------------HHHHH------HHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccC
Confidence 00000 234888877 5899999999999999999999999998643342 11 246
Q ss_pred cchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc----
Q 017718 261 PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---- 315 (367)
Q Consensus 261 ~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~---- 315 (367)
.|.+.++.+++++... .+|||+||||+++.|++|||++|||+||+|+.|- ++++.
T Consensus 196 ~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am 275 (346)
T PRK05096 196 YPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAM 275 (346)
T ss_pred hhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHH
Confidence 7788889888876543 6999999999999999999999999999999771 12111
Q ss_pred -------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc--ceee
Q 017718 316 -------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD--HIVT 354 (367)
Q Consensus 316 -------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~--~l~~ 354 (367)
+|. ..+.+++..+...|+..|.++|..+|.||+.. ++..
T Consensus 276 ~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~v 336 (346)
T PRK05096 276 KRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRV 336 (346)
T ss_pred hhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEE
Confidence 111 02889999999999999999999999999643 4444
No 39
>PLN02826 dihydroorotate dehydrogenase
Probab=99.87 E-value=1.1e-19 Score=180.83 Aligned_cols=123 Identities=29% Similarity=0.455 Sum_probs=101.5
Q ss_pred cCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCC-CC----------CCCC---cc----chHHHHHHHHHHhcC
Q 017718 221 TKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHG-AR----------QLDY---VP----ATIMALEEVVKATQG 276 (367)
Q Consensus 221 ~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~g-g~----------~~~~---~~----~~~~~l~~i~~~~~~ 276 (367)
.++||++|+.. +.++ |+.+.++|+|+|+++|+- ++ +..+ |+ .+.+.++++++.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 46899999964 4334 888999999999999942 11 1112 22 266788899888877
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 277 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
++|||++|||.+++|++++|.+||++||++|+++| +|+. ++..+++||.++|...|+++++|+.+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp~----~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGPA----LIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCHH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999988 4764 7788999999999999999999998743
No 40
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.86 E-value=4.1e-20 Score=176.64 Aligned_cols=173 Identities=25% Similarity=0.397 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 134 DRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
..+...+.+...++++ ++++.+|+.||.. |. .+.+.. +++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~g-----------------------~~~l~~--~~e~ 148 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNT-------------PG-----------------------GRALGQ--DPEL 148 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------CC-----------------------hhhhcc--CHHH
Confidence 3455666777777777 7888888888862 10 001110 2222
Q ss_pred --cH-HHHHhhcCCCEEEEecCCHH----HHHHHHHcCCcEEEEcCCCC-CC-------------CCC---cc----chH
Q 017718 213 --SW-KWLQTITKLPILVKGVLTAE----DARIAVQAGAAGIIVSNHGA-RQ-------------LDY---VP----ATI 264 (367)
Q Consensus 213 --~~-~~l~~~~~~Pv~vK~v~~~~----~a~~~~~~G~d~i~vs~~gg-~~-------------~~~---~~----~~~ 264 (367)
.. +++++..++||++|+..+.+ .|+.+.++|+|+|++.|+-. +. ..+ |+ -+.
T Consensus 149 l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al 228 (310)
T COG0167 149 LEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228 (310)
T ss_pred HHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHH
Confidence 22 38888889999999997653 38899999999999999532 11 012 22 266
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCCh
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 344 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si 344 (367)
..++++++.++.++|||+.|||.|++|+++.+++||++|||||++++ +|+. +++.+.++|.++|...|+.|+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp~----i~~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGPG----IVKEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCch----HHHHHHHHHHHHHHHcCCCCH
Confidence 78888888887789999999999999999999999999999999987 5774 788999999999999999999
Q ss_pred hhhcccce
Q 017718 345 KEITRDHI 352 (367)
Q Consensus 345 ~~l~~~~l 352 (367)
+|+++...
T Consensus 301 ~d~iG~~~ 308 (310)
T COG0167 301 QDIIGSAL 308 (310)
T ss_pred HHHhchhc
Confidence 99987654
No 41
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.86 E-value=4.5e-20 Score=185.75 Aligned_cols=245 Identities=21% Similarity=0.278 Sum_probs=170.7
Q ss_pred CccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCC----C----------------------
Q 017718 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS----T---------------------- 111 (367)
Q Consensus 59 vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~----~---------------------- 111 (367)
.|++|+++|++|++||++|.-. +.. ....+.+.. +.|..+++. |.. +
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~---~~~--~~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAP---PTN--KYYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcC---CCC--CHHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 4789999999999999999732 111 123344444 356654431 110 0
Q ss_pred -----CCHHH----H---HhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC-CchhHHhhhhcCCCC
Q 017718 112 -----SSVEE----V---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP 177 (367)
Q Consensus 112 -----~~~e~----i---~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~~~~~~~~~p~ 177 (367)
..++. + ....+ .+..+||....+.+.+.+.++.++++|+++|.+|+.||.. +.|
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------------ 143 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------------ 143 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc------------
Confidence 01121 1 11222 5578999743378888899999999999999999999972 111
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEc
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 250 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs 250 (367)
+. +..+.. +++. .. +++++.+++||++|+..+. +.|+.+.++|+|+|++.
T Consensus 144 -----~~----------------g~~~~~--~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 144 -----GM----------------GSAVGQ--VPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -----CC----------------cccccC--CHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 00 000111 2222 22 3778778899999998543 55788999999999976
Q ss_pred CCC-C-----------------C---CCCCccc----hHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 251 NHG-A-----------------R---QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 251 ~~g-g-----------------~---~~~~~~~----~~~~l~~i~~~~~-~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
|+- + + +..+|++ .++.+.++++.++ .++|||++|||.+++|++++|.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 641 1 1 1122444 5788888887663 27999999999999999999999999999
Q ss_pred echHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 305 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 305 ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
|||.+++ +|+. ++..+.+||+.+|...|+.++.++.+..+
T Consensus 281 i~ta~~~----~gp~----ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 281 VCTAAMQ----YGFR----IVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeeecc----CCch----hHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 9999886 4664 67789999999999999999999987544
No 42
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.85 E-value=2.3e-19 Score=173.59 Aligned_cols=238 Identities=19% Similarity=0.186 Sum_probs=164.8
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC--------------------------C
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~--------------------------~ 112 (367)
|++|+++|.+|++||++|.-... .+....+.+.+.|..+++ .|... .
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 68999999999999999984321 234455568888888775 23211 1
Q ss_pred CHH----HHHh---hCC-CceEEEEeecCCHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 113 SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 113 ~~e----~i~~---~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
..+ ++.+ ..+ .|...++. +.+.+...+.+++++++| ++++.+|+.||..... ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~----------------~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPGK----------------PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCc----------------cc
Confidence 122 2221 111 45666775 556677778889998888 8999999999952110 00
Q ss_pred ccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecCCH---HHHHHH---HHcCCcEEEEcCCC-
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVLTA---EDARIA---VQAGAAGIIVSNHG- 253 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~~~---~~a~~~---~~~G~d~i~vs~~g- 253 (367)
+ . .|++. . .+++++.+++||++|+..+. +.++.+ .+.|+++|...|.-
T Consensus 138 ~--------------------g--~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 138 I--------------------A--YDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred c--------------------c--cCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 0 0 01111 2 23788888999999998543 223333 45677877776631
Q ss_pred -CC---------CC-----CC---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 254 -AR---------QL-----DY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 254 -g~---------~~-----~~---~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|. .. .+ |+ ..+..+.++++.++.++|||++|||.+++|++|+|.+||++||+++++++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 11 00 11 22 24566777777776679999999999999999999999999999999987
Q ss_pred HhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 312 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 312 ~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 276 ----~gp~----~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 ----EGPA----VFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ----hChH----HHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 3654 778899999999999999999999873
No 43
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.83 E-value=2.1e-18 Score=169.27 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=156.3
Q ss_pred CCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCCC----------------------
Q 017718 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS---------------------- 112 (367)
Q Consensus 56 ~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~~---------------------- 112 (367)
..+++++|+++|.++++||++|. |.. .+....+.+.+.|..+++ .|....
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45788999999999999999877 322 244566778899888775 332110
Q ss_pred ------CHH----HHHhh-CCCceEEEEeecC------CHHHHHHHHHHHHHcCCcEEEEecCCCCC-CchhHHhhhhcC
Q 017718 113 ------SVE----EVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFT 174 (367)
Q Consensus 113 ------~~e----~i~~~-~~~~~~~QLy~~~------d~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~~~~~~~~ 174 (367)
.++ ++.+. ...|.++++.... ..+...++++++.+ +++++.+|+.||.. +.|. .
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~------~- 188 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRD------L- 188 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCccc------c-
Confidence 011 22221 1235677775321 23444455555543 58999999999864 1110 0
Q ss_pred CCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcC-----CCEEEEecCC------HHHHHHHH
Q 017718 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITK-----LPILVKGVLT------AEDARIAV 240 (367)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~-----~Pv~vK~v~~------~~~a~~~~ 240 (367)
.++.. . .+++|+.++ +||++|+..+ .+.|+.+.
T Consensus 189 ---------------------------------~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~ 235 (344)
T PRK05286 189 ---------------------------------QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLAL 235 (344)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 01111 1 237777776 9999999843 24478889
Q ss_pred HcCCcEEEEcCCCC-------------CCCCCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEE
Q 017718 241 QAGAAGIIVSNHGA-------------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 303 (367)
Q Consensus 241 ~~G~d~i~vs~~gg-------------~~~~~~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V 303 (367)
++|+|+|+++|.-- ++..+|++ .++.+.++++.+++++|||++|||++++|+.+++.+|||+|
T Consensus 236 ~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 236 EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 99999999988420 01112332 56678888887766799999999999999999999999999
Q ss_pred EechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhC
Q 017718 304 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 340 (367)
Q Consensus 304 ~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G 340 (367)
|+||++++ +|+. ++..+++||+.+|...|
T Consensus 316 ~v~~~~~~----~gP~----~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 316 QIYSGLIY----EGPG----LVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHH----hCch----HHHHHHHHHHHHHHhcC
Confidence 99999987 3564 77889999999998876
No 44
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.83 E-value=4e-20 Score=178.84 Aligned_cols=237 Identities=25% Similarity=0.341 Sum_probs=151.7
Q ss_pred EeCcccchhccCChhhHHHHHHHHHcCCc-eeecCCCCC-----CHH---HHHhhCC--CceEEEEeecCCHHHHHHHHH
Q 017718 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----SVE---EVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (367)
Q Consensus 75 ~iAPm~~~~l~~~~~e~~~a~aa~~~G~~-~~vs~~~~~-----~~e---~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ 143 (367)
++|||.+.+ |.++++.|.++|.. .++++|-+. ..+ +.....+ .|..+||. ++|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 589998875 88999999999999 888888431 111 1112223 58999998 789999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhh
Q 017718 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTI 220 (367)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~ 220 (367)
.+.+.|+++|+||++||.+ +++.+ +.++.++. +++. .+ +.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~---------------~v~~~----------------g~Ga~Ll~--~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP---------------KVTKG----------------GAGAALLK--DPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH---------------HHHHC----------------T-GGGGGC---HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH---------------HHhcC----------------CcChhhhc--ChHHhhHHHHhhhcc
Confidence 9989999999999999983 11111 11223443 3333 33 378888
Q ss_pred cCCCEEEEecC--C------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 221 TKLPILVKGVL--T------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 221 ~~~Pv~vK~v~--~------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
+++||.+|... + .+-++.+.++|+++|+|++....|...++..++.+.++++.+ ++|||++|||.|.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 89999999973 1 345889999999999995443446677899999999999888 6999999999999999
Q ss_pred HHHHHc-CCCEEEech-----HHHHHh---hccCh----HHHHHHHHHHHHHHHHHHHHhC-CCChhhhccccee
Q 017718 293 FKALAL-GASGIFIGR-----PVVYSL---AAEGE----KGVRRVLEMLREEFELAMALSG-CRSLKEITRDHIV 353 (367)
Q Consensus 293 ~kal~l-GAd~V~ig~-----~~l~~l---~~~G~----~~v~~~i~~l~~el~~~m~~~G-~~si~~l~~~~l~ 353 (367)
.+.+.. |+|+||||| ||+|.. ...|. ..+.+.++.+.++++......| ...+..++++..+
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 273 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKW 273 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCC
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 999985 999999999 567752 11111 1145667777888887777775 3456666666544
No 45
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.82 E-value=2.6e-18 Score=175.58 Aligned_cols=134 Identities=24% Similarity=0.391 Sum_probs=110.9
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------CCCCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++|+.+ ++||+++.+.+.++++.+.++|||+|.++.+.|. ..+.|.|.+..+.++.+.... ++|||++|||+
T Consensus 275 ~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~ 354 (495)
T PTZ00314 275 KLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIK 354 (495)
T ss_pred HHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCC
Confidence 888886 6899999999999999999999999999654331 235677888888888776542 69999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc-----------------------cCh------
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----------------------EGE------ 318 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~-----------------------~G~------ 318 (367)
++.|++||+++||++||+|+.|.- +++. +|.
T Consensus 355 ~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~~~v~~ 434 (495)
T PTZ00314 355 NSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKVAQGVSGSVVD 434 (495)
T ss_pred CHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccccCCceEEeeec
Confidence 999999999999999999998732 1110 011
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 319 -KGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 319 -~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
..+.+++..+..+|+..|.++|+.+|.||+.
T Consensus 435 ~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 435 KGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 1288999999999999999999999999986
No 46
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.82 E-value=1e-18 Score=178.47 Aligned_cols=152 Identities=26% Similarity=0.308 Sum_probs=118.9
Q ss_pred HHHHhhcCCCEEEEe--cCCHHHHHHHHHcCCcEEEEcCCCC-----C-CCCCccchHHHHHHHHHHh-------cCCCc
Q 017718 215 KWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT-------QGRIP 279 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~--v~~~~~a~~~~~~G~d~i~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~~~~~ 279 (367)
+++|+.++.++.|+. +.+.++|+.+.++|||+|.|++||| + +.+.+++.+.++.++++++ +.++|
T Consensus 275 ~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~ 354 (502)
T PRK07107 275 DWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP 354 (502)
T ss_pred HHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce
Confidence 488888864444444 8999999999999999999999999 4 5677899999999998865 22499
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc--------------------cChH
Q 017718 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------------------EGEK 319 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~--------------------~G~~ 319 (367)
||+||||+++.|++|||++|||+||+|++|- ++++. +|.+
T Consensus 355 viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~egv~ 434 (502)
T PRK07107 355 ICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFEEGVD 434 (502)
T ss_pred EEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccCCccE
Confidence 9999999999999999999999999999882 11111 1111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc-ceeeccCCCCCCCCCC
Q 017718 320 -------GVRRVLEMLREEFELAMALSGCRSLKEITRD-HIVTEWDASLPRPVPR 366 (367)
Q Consensus 320 -------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~-~l~~~~~~~~~~~~~~ 366 (367)
.+.+++..+...|+..|.++|..+|.||+.. .+......+....-||
T Consensus 435 ~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~~f~~~t~~~~~e~~~h 489 (502)
T PRK07107 435 SYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITLVSSTSIVEGGAH 489 (502)
T ss_pred EEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCCeEEEECcchhhccCCC
Confidence 2888999999999999999999999999855 3333334444444443
No 47
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.82 E-value=1.7e-18 Score=169.09 Aligned_cols=240 Identities=20% Similarity=0.213 Sum_probs=164.3
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHHhhCC--CceEEEEeecCCHHHH
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~QLy~~~d~~~~ 138 (367)
...+.|+++|||.+.+ |.++++.|+++|. .+++++|-+. ...+.....+ .|..+||+ +.|++..
T Consensus 7 ~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~ 79 (333)
T PRK11815 7 KLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADL 79 (333)
T ss_pred cCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHH
Confidence 3456799999998876 7899999999997 6888888321 1122222222 68999998 7899999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-H
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-K 215 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~ 215 (367)
.+.+++++++|+++|.||++||..-.|. .+ .++ .+.. ++.+ .+ +
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~----~~-----------------------~Gs----~L~~--~p~~~~eiv~ 126 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQN----GR-----------------------FGA----CLMA--EPELVADCVK 126 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccC----CC-----------------------eee----HHhc--CHHHHHHHHH
Confidence 9999999999999999999999741110 00 011 1122 3443 33 3
Q ss_pred HHHhhcCCCEEEEecCC----------HHHHHHHHHcCCcEEEEcCCCC-CCCC-------CccchHHHHHHHHHHhcCC
Q 017718 216 WLQTITKLPILVKGVLT----------AEDARIAVQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGR 277 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~----------~~~a~~~~~~G~d~i~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~ 277 (367)
.+++.+++||.+|.... .+-++.+.++|+|+|++++..+ .+.. ..+..++.+.++++.+. +
T Consensus 127 avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ 205 (333)
T PRK11815 127 AMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-H 205 (333)
T ss_pred HHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-C
Confidence 78888899999998521 2336788999999999953211 1111 12346788888877642 6
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEechHHH-----HHhhc---cCh----HHHHHHHHHHHHHHHHHHHHhCCCChh
Q 017718 278 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV-----YSLAA---EGE----KGVRRVLEMLREEFELAMALSGCRSLK 345 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l-----~~l~~---~G~----~~v~~~i~~l~~el~~~m~~~G~~si~ 345 (367)
+|||++|||++.+|+.+++. |||+|||||+++ +.... .|. ....++++.+.++++..... |. .+.
T Consensus 206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 282 (333)
T PRK11815 206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLN 282 (333)
T ss_pred CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHH
Confidence 99999999999999999997 899999999654 33211 122 12445666677777666553 43 355
Q ss_pred hhcccc
Q 017718 346 EITRDH 351 (367)
Q Consensus 346 ~l~~~~ 351 (367)
.++++.
T Consensus 283 ~~rk~~ 288 (333)
T PRK11815 283 HITRHM 288 (333)
T ss_pred HHHHHH
Confidence 665543
No 48
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.81 E-value=6.7e-18 Score=172.69 Aligned_cols=136 Identities=21% Similarity=0.326 Sum_probs=110.0
Q ss_pred cHH---HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCC--c---cchHHHHHHHHHHhcCCCc
Q 017718 213 SWK---WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--V---PATIMALEEVVKATQGRIP 279 (367)
Q Consensus 213 ~~~---~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~--~---~~~~~~l~~i~~~~~~~~~ 279 (367)
.|+ ++|+.+ +.+|+++.+.+.++|+.+.++|||+|.+++|+|+ +... + .+++..++++.+.. ++|
T Consensus 276 ~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vp 353 (505)
T PLN02274 276 QLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVP 353 (505)
T ss_pred HHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCe
Confidence 465 899888 4899999999999999999999999999988763 2221 2 23555677776654 799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc----------------------cC
Q 017718 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA----------------------EG 317 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~----------------------~G 317 (367)
||++|||+++.|++|||++||++||+|+.|.- +++. +|
T Consensus 354 VIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~eg 433 (505)
T PLN02274 354 VIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQG 433 (505)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccCCc
Confidence 99999999999999999999999999998832 1110 11
Q ss_pred hH-------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 318 EK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 318 ~~-------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
.+ .+.+++..|...|+..|.++|+.+|.||+..
T Consensus 434 v~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 434 VSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred eEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 11 2889999999999999999999999999866
No 49
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.80 E-value=6.4e-18 Score=165.31 Aligned_cols=251 Identities=25% Similarity=0.284 Sum_probs=145.1
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHH
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~ 147 (367)
.+++.||+++.|+++.+. ++.-.++++++.+.|+.+..++.. .+.++.... .....+|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-KDLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-CCceEEEcC-CCCCCCCHHHhc----
Confidence 457899999999998664 467789999999999888777653 444443322 122378974 344444444443
Q ss_pred cCCcEEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCcccccc-chhhHHHhhhccCccc----cH----HHH
Q 017718 148 AGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEAN-DSGLAAYVAGQIDRSL----SW----KWL 217 (367)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~----~~----~~l 217 (367)
.+++|-|-+.--.. -..|..+|. +++.. ++... .......+.+...+++ +| ++|
T Consensus 134 -~a~~iEIKigQGAK------pG~GG~Lp~~KV~~~---------ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~L 197 (368)
T PF01645_consen 134 -QADMIEIKIGQGAK------PGEGGHLPGEKVTEE---------IARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEEL 197 (368)
T ss_dssp -C-SEEEEE---TTS------TTT--EE-GGG--HH---------HHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHH
T ss_pred -CCCeEEEEEecCcc------ccCcceechhhchHH---------HHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHH
Confidence 45666665542210 001111221 11100 00000 0000111112222222 22 278
Q ss_pred Hhhc-CCCEEEEecCC--HHH-HHHHHHcCCcEEEEcCC-CCCC-------CCCccchHHHHHHHHHHh-----cCCCcE
Q 017718 218 QTIT-KLPILVKGVLT--AED-ARIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPV 280 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v~~--~~~-a~~~~~~G~d~i~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~~~v 280 (367)
|+.+ ++||.+|.+.. .++ +..+.++|+|.|+++++ ||+. -+.|.|....|.++.+.+ ++++.+
T Consensus 198 r~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~L 277 (368)
T PF01645_consen 198 RELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSL 277 (368)
T ss_dssp HHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEE
T ss_pred HhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEE
Confidence 8888 89999999843 344 34489999999999987 4442 146788888888888765 457999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc-----------------------------ChHHHHHHHHHHHHH
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREE 331 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~-----------------------------G~~~v~~~i~~l~~e 331 (367)
+++||++++.|++|+++||||+|.+||++|+++.|. +.+.|.+++..+.+|
T Consensus 278 i~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~e 357 (368)
T PF01645_consen 278 IASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEE 357 (368)
T ss_dssp EEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHH
T ss_pred EEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998752 346799999999999
Q ss_pred HHHHHHHhCCC
Q 017718 332 FELAMALSGCR 342 (367)
Q Consensus 332 l~~~m~~~G~~ 342 (367)
++..|..+|.+
T Consensus 358 l~~~~~a~G~~ 368 (368)
T PF01645_consen 358 LREILAALGKR 368 (368)
T ss_dssp HHHHHHHHT-S
T ss_pred HHHHHHHhCCC
Confidence 99999999964
No 50
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.79 E-value=1.5e-17 Score=159.88 Aligned_cols=220 Identities=19% Similarity=0.138 Sum_probs=148.9
Q ss_pred eeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC--------------------------CCH-
Q 017718 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------SSV- 114 (367)
Q Consensus 63 t~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~--------------------------~~~- 114 (367)
++++|.++++||++|+-... .+....+.+.+.|..+++ .|... ..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC------TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCC------CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 47899999999999984322 355666666678888775 22211 012
Q ss_pred ---HHHHhh------CCCceEEEEeecCCHHHHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHhhhhcCCCCccccc
Q 017718 115 ---EEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (367)
Q Consensus 115 ---e~i~~~------~~~~~~~QLy~~~d~~~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~ 182 (367)
+++.+. ...|...|+. .. .+...+.++++++. |++++.+|+.||......
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~-g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~---------------- 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVT-GS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKP---------------- 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECC-CC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcc----------------
Confidence 223221 1257888987 34 77777778888775 799999999999731100
Q ss_pred cccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH------HHHHHHHHc--CCcEEEEcC
Q 017718 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA------EDARIAVQA--GAAGIIVSN 251 (367)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~------~~a~~~~~~--G~d~i~vs~ 251 (367)
. +. .+++. +. +++++.+++||++|+.... +.|+.+.++ |+|+|++.|
T Consensus 137 ~--------------------~~--~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 137 P--------------------PA--YDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred c--------------------cc--CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 0 00 01221 22 3788888999999998432 235556677 999999876
Q ss_pred CCC---------CC-------CCCccc-------hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 252 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 252 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
+-+ +. ..+|.+ .+..+.++++.++.++|||++|||.+++|++++|.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 421 11 112332 3455677777775569999999999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHH
Q 017718 309 VVYSLAAEGEKGVRRVLEMLREEFELAM 336 (367)
Q Consensus 309 ~l~~l~~~G~~~v~~~i~~l~~el~~~m 336 (367)
+++ +|+. +++.+.+||+.+|
T Consensus 275 ~~~----~gp~----~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGK----EGPK----VFARIEKELEDIW 294 (294)
T ss_pred hhh----cCch----HHHHHHHHHHhhC
Confidence 986 3664 6677888887764
No 51
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.79 E-value=1.7e-17 Score=169.81 Aligned_cols=136 Identities=27% Similarity=0.418 Sum_probs=112.6
Q ss_pred HHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcC-----CCCCCC-CCccchHHHHHHHHHHhc-CCCcEEEecCC
Q 017718 215 KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-DYVPATIMALEEVVKATQ-GRIPVFLDGGV 286 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~-----~gg~~~-~~~~~~~~~l~~i~~~~~-~~~~via~GGI 286 (367)
+++++.+ ++||+++.+.+.++|+.+.++|+|+|.++. |+++.+ .++.++++++.++++..+ .++|||++|||
T Consensus 261 ~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi 340 (486)
T PRK05567 261 REIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGI 340 (486)
T ss_pred HHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCC
Confidence 3888887 899999999999999999999999999843 333443 457899999999987663 36999999999
Q ss_pred CCHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc------------------------cCh----
Q 017718 287 RRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------------------------EGE---- 318 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~------------------------~G~---- 318 (367)
+++.|++|||++|||+||+|++|-- +++. +|.
T Consensus 341 ~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g~~~~~ 420 (486)
T PRK05567 341 RYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEGIEGRV 420 (486)
T ss_pred CCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCceEEeC
Confidence 9999999999999999999997721 1110 111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 319 ---KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 319 ---~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
..+.+++..+...|+..|.++|..+|.||+..
T Consensus 421 ~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 421 PYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 12889999999999999999999999999843
No 52
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.79 E-value=9.1e-18 Score=170.22 Aligned_cols=133 Identities=30% Similarity=0.437 Sum_probs=110.4
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC---C---CCCccchHHHHHHHHHHhc-CCCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---Q---LDYVPATIMALEEVVKATQ-GRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~---~---~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~ 287 (367)
++|+.+ ++||+++.+.+.++|+.+.++|+|+|.|+.+.|. + ..++.+.+..+.++.+... .++|||++|||+
T Consensus 258 ~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~ 337 (450)
T TIGR01302 258 EIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIR 337 (450)
T ss_pred HHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCC
Confidence 788875 7999999999999999999999999999866552 1 2467888899988877653 379999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHH--------------------HHhhc------------------------cChH----
Q 017718 288 RGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EGEK---- 319 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~------------------------~G~~---- 319 (367)
++.|++|||++||++||+|+.|. ++++. +|.+
T Consensus 338 ~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~~egv~~~~~ 417 (450)
T TIGR01302 338 YSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVPEGVEGAVP 417 (450)
T ss_pred CHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccccCCceEEccc
Confidence 99999999999999999999872 11110 1111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 320 ---GVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 320 ---~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
.+.+++..+...|+..|.++|+.++.||+
T Consensus 418 ~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 418 YKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred ccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 38889999999999999999999999986
No 53
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.79 E-value=1.7e-17 Score=161.85 Aligned_cols=245 Identities=20% Similarity=0.232 Sum_probs=157.0
Q ss_pred chhhHHHhHhccccceeecccc-CCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCC
Q 017718 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW 109 (367)
Q Consensus 32 ~~~t~~~n~~~~~~i~l~pr~l-~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~ 109 (367)
-|.+++-....+..+...|-.+ ....+.|++|+++|.++++||++|. |.. .+....+.+.+.|..+++ .|.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GFD------KNAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CCC------CCHHHHHHHHHCCCcEEEEecc
Confidence 3455555555666655555221 4567889999999999999998877 221 234455555578887665 232
Q ss_pred CCC----------------------------C----HHHHHhhC--CCceEEEEeecCC------HHHHHHHHHHHHHcC
Q 017718 110 STS----------------------------S----VEEVASTG--PGIRFFQLYVYKD------RNVVAQLVRRAERAG 149 (367)
Q Consensus 110 ~~~----------------------------~----~e~i~~~~--~~~~~~QLy~~~d------~~~~~~~l~ra~~~G 149 (367)
... . ++++.+.. ..|.++|+..... .+...++++++.. +
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 110 1 12232221 2578888863221 2333344444433 3
Q ss_pred CcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcC----
Q 017718 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITK---- 222 (367)
Q Consensus 150 ~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~---- 222 (367)
++++.+|+.||..... +.. .++.. . .+++|+.++
T Consensus 161 ad~ielN~scP~~~g~----------------~~~-----------------------~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPGL----------------RDL-----------------------QGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCcc----------------ccc-----------------------cCHHHHHHHHHHHHHHHhhccc
Confidence 8999999999974110 000 01111 1 236777665
Q ss_pred -CCEEEEecCC------HHHHHHHHHcCCcEEEEcCCCC-------------CCCCCcc----chHHHHHHHHHHhcCCC
Q 017718 223 -LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRI 278 (367)
Q Consensus 223 -~Pv~vK~v~~------~~~a~~~~~~G~d~i~vs~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~~ 278 (367)
+||++|.... .+.++.+.++|+|+|+++|.-. .+..+|+ .+++.+.++++.+++++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 9999999843 2347888999999999987411 0011222 34677888888776679
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~e 331 (367)
|||++|||++++|+.+++.+|||+||+||++++ +|+. ++..+++|
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~----~gP~----~~~~i~~~ 326 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY----EGPG----LVKRIKRE 326 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh----hCcH----HHHHHHhc
Confidence 999999999999999999999999999999987 3664 44555554
No 54
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.78 E-value=3.9e-17 Score=165.86 Aligned_cols=135 Identities=27% Similarity=0.329 Sum_probs=111.2
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++|+.+ ++||++-.+.+.+.++.+.++|||+|.|+..+|+. ..+|.++...+.++++.... .+|||++|||+
T Consensus 259 ~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~ 338 (475)
T TIGR01303 259 AVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVR 338 (475)
T ss_pred HHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 788766 79999977999999999999999999998777752 24577888888888655432 69999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHH----------H-----------Hhh-----------------------ccChHH---
Q 017718 288 RGTDVFKALALGASGIFIGRPVV----------Y-----------SLA-----------------------AEGEKG--- 320 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l----------~-----------~l~-----------------------~~G~~~--- 320 (367)
++.|++|||++||++||+|+.|- + +++ .+|.+|
T Consensus 339 ~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eGv~~~~~ 418 (475)
T TIGR01303 339 HPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEGISTSRM 418 (475)
T ss_pred CHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCceecccc
Confidence 99999999999999999999771 1 111 023332
Q ss_pred --------HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 321 --------VRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 321 --------v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+.+++..+...|+..|.++|+++|.||+..
T Consensus 419 ~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~ 456 (475)
T TIGR01303 419 GLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER 456 (475)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC
Confidence 778999999999999999999999999865
No 55
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.77 E-value=5e-17 Score=155.70 Aligned_cols=208 Identities=24% Similarity=0.314 Sum_probs=147.0
Q ss_pred eeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCCC-----------------------------
Q 017718 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS----------------------------- 112 (367)
Q Consensus 63 t~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~----------------------------- 112 (367)
|+++|+++++||++|.-... .+....+.+.+.|..+++. |....
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999995442 2567788888888777652 22110
Q ss_pred ------CHH----HHHhh----CCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCc
Q 017718 113 ------SVE----EVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (367)
Q Consensus 113 ------~~e----~i~~~----~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~ 178 (367)
..+ ++.+. ...+..+||. ..+.+...+.+++++++|+++|.+|+.||......
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~------------ 141 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGGR------------ 141 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc------------
Confidence 111 22221 1257788987 56788888899999999999999999999731100
Q ss_pred cccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecC--C----HHHHHHHHHcCCcEEEE
Q 017718 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVL--T----AEDARIAVQAGAAGIIV 249 (367)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~--~----~~~a~~~~~~G~d~i~v 249 (367)
.+ . .++.+ . .+++|+.+++||++|... + .+.++.+.++|+|+|++
T Consensus 142 ----~~--------------------~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 142 ----QL--------------------G--QDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ----cc--------------------c--cCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 0 01111 1 237888789999999873 3 34588899999999999
Q ss_pred cCCC-CCC------------CC---Ccc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 250 SNHG-ARQ------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 250 s~~g-g~~------------~~---~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+|+- ++. .. ++. ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 8742 110 01 111 246677888877754799999999999999999999999999999999
Q ss_pred HHHhhccChH
Q 017718 310 VYSLAAEGEK 319 (367)
Q Consensus 310 l~~l~~~G~~ 319 (367)
+. +|+.
T Consensus 276 ~~----~GP~ 281 (289)
T cd02810 276 MW----DGPD 281 (289)
T ss_pred Hh----cCcc
Confidence 86 4664
No 56
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.75 E-value=4.4e-17 Score=151.49 Aligned_cols=185 Identities=16% Similarity=0.161 Sum_probs=129.5
Q ss_pred ceEeCcccchhccCChhhHHHHH-HHHHcCCceeecCCCC----------------------CCHHHHH------hhCCC
Q 017718 73 PIMIAPTAMQKMAHPEGEYATAR-AASAAGTIMTLSSWST----------------------SSVEEVA------STGPG 123 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~-aa~~~G~~~~vs~~~~----------------------~~~e~i~------~~~~~ 123 (367)
|+++|||++.+ +.+|++ .|...|+.+ ++.++. .+.+.+. ...+.
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~~-~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLVF-LGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEEE-EcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCC
Confidence 89999999876 678998 566666643 433221 1222221 11235
Q ss_pred ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017718 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (367)
Q Consensus 124 ~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (367)
+..+|++ +.|++.+.+.++++++. ++.|.+|++||..- +..++ .++.
T Consensus 74 p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~---------------v~~~g----------------~G~~ 120 (233)
T cd02911 74 LVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQPE---------------MVEAG----------------AGEA 120 (233)
T ss_pred eEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcHH---------------HhcCC----------------cchH
Confidence 7899998 78899999999998774 69999999999730 11000 1222
Q ss_pred hhhccCccc--cH-HHHHhhcCCCEEEEecCC-----HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc
Q 017718 204 VAGQIDRSL--SW-KWLQTITKLPILVKGVLT-----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 275 (367)
Q Consensus 204 ~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~-----~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 275 (367)
++. +++. .+ +.+++ .++||++|.... .+.++.+.++|+|+|.+++ +. .+....++.+++++ +
T Consensus 121 Ll~--~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~--~~--~g~~ad~~~I~~i~--~- 190 (233)
T cd02911 121 LLK--DPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDA--MD--PGNHADLKKIRDIS--T- 190 (233)
T ss_pred HcC--CHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECc--CC--CCCCCcHHHHHHhc--C-
Confidence 333 3332 32 37776 589999999732 4568899999999987753 21 12345677787775 3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 276 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
++|||++|||.+++|+.+++..|||+||+||+
T Consensus 191 -~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 -ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred -CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999994
No 57
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.74 E-value=8.4e-17 Score=148.90 Aligned_cols=197 Identities=20% Similarity=0.243 Sum_probs=142.5
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC------CHH--HHHhhC--CCceEEEEeecCCHHHHHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~------~~e--~i~~~~--~~~~~~QLy~~~d~~~~~~~l 142 (367)
|+++|||.+.+ |+++++.+.++|...++++|-.. .-. ...... +.|..+||. ..+++...+.+
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 68999997764 89999999999988888877221 111 111111 267899997 67888889999
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHh
Q 017718 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQT 219 (367)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~ 219 (367)
++++++|++++.||+.||..-.|. .++ ++ .+.. ++.+ + .+.+++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~-----------------------G~----~l~~--~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGA-----------------------GA----ALLK--DPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCe-----------------------ee----hhcC--CHHHHHHHHHHHHH
Confidence 999999999999999998631110 000 00 0011 2222 2 237777
Q ss_pred hcCCCEEEEecCCH-------HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 220 ITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~-------~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
..+.|+.+|..... +.++.+.++|+|+|.+++....+...++..++.+.++++.+ ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 77899999987322 33677889999999995432122234456788888887755 7999999999999999
Q ss_pred HHHHHc-CCCEEEechHHHH
Q 017718 293 FKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~l-GAd~V~ig~~~l~ 311 (367)
.+++.. |||+||+||+++.
T Consensus 199 ~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHh
Confidence 999998 8999999998875
No 58
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.73 E-value=1.3e-16 Score=159.31 Aligned_cols=259 Identities=20% Similarity=0.201 Sum_probs=173.3
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHH
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~ 147 (367)
..+..||.++.|+++.+. ++...++++++.+.|.-+..++.. ...++. ...+..+.|+- ......+.+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGG-e~~~~~--~~~~s~I~Qva-SGRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGG-EDPERY--EDGRSAIKQVA-SGRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCC-CCHHHh--ccccceEEEec-cccCccCHHHhC----
Confidence 667889999999998875 457789999999999877666554 444433 22245678865 333444444443
Q ss_pred cCCcEEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCccccccchhh-HHHhhhccCccc-cHH-------HH
Q 017718 148 AGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGL-AAYVAGQIDRSL-SWK-------WL 217 (367)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~-~~~-------~l 217 (367)
.++++-|-+.--.. --.|-++|. |++.. .++.+.... ...+++.+++++ +.+ .|
T Consensus 234 -~a~~ieIKiaQGAK------PGeGG~Lpg~KV~~~---------IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dL 297 (485)
T COG0069 234 -NADAIEIKIAQGAK------PGEGGQLPGEKVTPE---------IAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDL 297 (485)
T ss_pred -ccceEEEEeccCCC------CCCCCCCCCccCCHH---------HHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHH
Confidence 34444444432110 001222332 22210 000000000 012222233333 332 66
Q ss_pred Hhhc-CCCEEEEecC--CHHHHHH-HHHcCCcEEEEcCC-CCCC-------CCCccchHHHHHHHHHHh-----cCCCcE
Q 017718 218 QTIT-KLPILVKGVL--TAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPV 280 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v~--~~~~a~~-~~~~G~d~i~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~~~v 280 (367)
|+.. ..+|.||.+. ..++... ..+++||.|+|++| |||. -+.|.|....|++..+.+ ++++.|
T Consensus 298 k~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l 377 (485)
T COG0069 298 KEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKL 377 (485)
T ss_pred HhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEE
Confidence 7665 3679999984 3455444 88999999999998 5553 245777777788887764 468999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc-----------------------------ChHHHHHHHHHHHHH
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREE 331 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~-----------------------------G~~~v~~~i~~l~~e 331 (367)
+++||++|+.||+|+++||||.|.+||+.|+++.|. +++.|.+++..+.+|
T Consensus 378 ~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e 457 (485)
T COG0069 378 IADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEE 457 (485)
T ss_pred EecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988752 357899999999999
Q ss_pred HHHHHHHhCCCChhhhcccc
Q 017718 332 FELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 332 l~~~m~~~G~~si~~l~~~~ 351 (367)
++++|+.+|.+++.||++..
T Consensus 458 ~rella~lG~~~l~el~g~~ 477 (485)
T COG0069 458 LRELLAALGKRSLSELIGRT 477 (485)
T ss_pred HHHHHHHhCCCCHHHHhcch
Confidence 99999999999999999654
No 59
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.73 E-value=1.5e-16 Score=149.00 Aligned_cols=121 Identities=27% Similarity=0.434 Sum_probs=99.3
Q ss_pred CCCEEEEecCCH------HHHHHHHHcCCcEEEEcCCC-CC----------CCC---Ccc----chHHHHHHHHHHhcCC
Q 017718 222 KLPILVKGVLTA------EDARIAVQAGAAGIIVSNHG-AR----------QLD---YVP----ATIMALEEVVKATQGR 277 (367)
Q Consensus 222 ~~Pv~vK~v~~~------~~a~~~~~~G~d~i~vs~~g-g~----------~~~---~~~----~~~~~l~~i~~~~~~~ 277 (367)
+.|+++|...+. +.+....+...|+++++|.. .+ .-. +|+ .+.+.++++++.++++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 469999998542 33666778999999999842 11 001 222 3567889998888889
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 278 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|||+.|||.||.|+.+.+.+||+.|++++++.| +|+. +++.++.||...|...|+.++.|+.+.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp~----i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGPA----IIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCch----hHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999999999999999999999999999998877 5764 888999999999999999999999865
No 60
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.72 E-value=2.2e-16 Score=151.91 Aligned_cols=113 Identities=25% Similarity=0.342 Sum_probs=82.5
Q ss_pred HHHhhcCCCEEEEecC---CH---HHHHHHHHcCCcEEEEcCCCCC----------CC----C---Ccc----chHHHHH
Q 017718 216 WLQTITKLPILVKGVL---TA---EDARIAVQAGAAGIIVSNHGAR----------QL----D---YVP----ATIMALE 268 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~---~~---~~a~~~~~~G~d~i~vs~~gg~----------~~----~---~~~----~~~~~l~ 268 (367)
++++..++||++|+.. +. ..+..+.+.|+++|++.|.-.. .. . +|+ .++..+.
T Consensus 156 ~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~ 235 (295)
T PF01180_consen 156 AVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVR 235 (295)
T ss_dssp HHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHH
T ss_pred HHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHH
Confidence 7777789999999986 22 2355566889999998774211 01 1 122 2556778
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHH
Q 017718 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 336 (367)
Q Consensus 269 ~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m 336 (367)
++++.++.++|||+.|||.|++|+.++|.+||++||++|.+++. |+. +++.+.+||+.+|
T Consensus 236 ~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 236 ELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 88888866799999999999999999999999999999999873 664 6778888888876
No 61
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.2e-16 Score=148.17 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=147.7
Q ss_pred cCeeeccce-EeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC-C-H--HHHH----hhCC--CceEEEEeecCC
Q 017718 66 LGFKISMPI-MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-V--EEVA----STGP--GIRFFQLYVYKD 134 (367)
Q Consensus 66 ~g~~l~~Pi-~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~-~-~--e~i~----~~~~--~~~~~QLy~~~d 134 (367)
|-.+...|. ++|||-..+ ++++++.+++.|...+.+.|-.. + . |... ...+ .|..+|+- .+|
T Consensus 12 f~~~~~~~~ri~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~nd 84 (358)
T KOG2335|consen 12 FWSKQGRPKRIVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GND 84 (358)
T ss_pred hhhhcCCcccccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCC
Confidence 333444442 699996554 89999999999999988877211 0 0 1111 1122 68999986 789
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc-
Q 017718 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS- 213 (367)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 213 (367)
++.+.+.++.+...+ ++|++|++||.. + -.+-+| +.+++. ++.+.
T Consensus 85 p~~ll~Aa~lv~~y~-D~idlNcGCPq~-~---a~~g~y---------------------------Ga~L~~--~~eLv~ 130 (358)
T KOG2335|consen 85 PENLLKAARLVQPYC-DGIDLNCGCPQK-V---AKRGGY---------------------------GAFLMD--NPELVG 130 (358)
T ss_pred HHHHHHHHHHhhhhc-CcccccCCCCHH-H---HhcCCc---------------------------cceecc--CHHHHH
Confidence 999999988888877 999999999952 0 011111 112222 22221
Q ss_pred --HHHHHhhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEcCCCCCC----CCCccchHHHHHHHHHHhcCCCcEE
Q 017718 214 --WKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 214 --~~~l~~~~~~Pv~vK~v~------~~~~a~~~~~~G~d~i~vs~~gg~~----~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
...+++.++.||.+|+.. +.+.++++.++|++.++| ||.+. ...++..++.++.+++.+++ +|||
T Consensus 131 e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipvi 207 (358)
T KOG2335|consen 131 EMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPVI 207 (358)
T ss_pred HHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEE
Confidence 127788889999999983 456699999999999999 66652 22578899999999998854 9999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEechHHHH
Q 017718 282 LDGGVRRGTDVFKALA-LGASGIFIGRPVVY 311 (367)
Q Consensus 282 a~GGI~~~~dv~kal~-lGAd~V~ig~~~l~ 311 (367)
++|+|.+.+|+..++. .|||+||+|+..|+
T Consensus 208 aNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 208 ANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred eeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 9999999999999999 89999999995443
No 62
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.70 E-value=2.5e-15 Score=146.89 Aligned_cols=108 Identities=22% Similarity=0.300 Sum_probs=79.6
Q ss_pred HHHhhcC-------CCEEEEecCC------HHHHHHHHHcCCcEEEEcCCCC-------------CCCCCccc----hHH
Q 017718 216 WLQTITK-------LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVPA----TIM 265 (367)
Q Consensus 216 ~l~~~~~-------~Pv~vK~v~~------~~~a~~~~~~G~d~i~vs~~gg-------------~~~~~~~~----~~~ 265 (367)
++++.++ +||++|+..+ .+.|+.+.++|+|+|++.|+-- ...-+|++ ...
T Consensus 197 ~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~ 276 (335)
T TIGR01036 197 AVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTE 276 (335)
T ss_pred HHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHH
Confidence 5555554 9999999853 2347889999999999998421 00112222 445
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHH
Q 017718 266 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 266 ~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~e 331 (367)
.+.++++.+++++|||+.|||.+++|+.++|.+||++|++||++++ +|+. +++.+.+|
T Consensus 277 ~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~----~Gp~----~~~~i~~~ 334 (335)
T TIGR01036 277 IIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY----WGPP----LVKEIVKE 334 (335)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH----hCch----HHHHHHhh
Confidence 6677777666689999999999999999999999999999999987 3664 44455544
No 63
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.68 E-value=6.2e-15 Score=149.95 Aligned_cols=135 Identities=30% Similarity=0.377 Sum_probs=108.9
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CC--CCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QL--DYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~--~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++|+.+ +++|+...+.+.+.|+.+.++|+|+|-|.-..|. +. ..+.|.+.++.++.+.... .+|||++|||+
T Consensus 261 ~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~ 340 (479)
T PRK07807 261 AVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVR 340 (479)
T ss_pred HHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCC
Confidence 778777 6889888999999999999999999988543332 11 2356889999999876533 79999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH---------------------------Hhh-----------------ccChHH---
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY---------------------------SLA-----------------AEGEKG--- 320 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~---------------------------~l~-----------------~~G~~~--- 320 (367)
++.|+.|+|++||++||+|+.|.- ++. .+|.++
T Consensus 341 ~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eGv~~~~~ 420 (479)
T PRK07807 341 HPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEGISTSRM 420 (479)
T ss_pred CHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCCccceee
Confidence 999999999999999999998731 111 012111
Q ss_pred --------HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 321 --------VRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 321 --------v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+.+++..|...|+..|.++|..+|.||+..
T Consensus 421 ~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 421 YLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred eccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 778899999999999999999999999855
No 64
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.66 E-value=4.6e-15 Score=163.47 Aligned_cols=252 Identities=21% Similarity=0.139 Sum_probs=166.8
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCc
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ 151 (367)
.+|.++.|+++.+. ++...++++++.+.|+....|+. ....++.. .......+|+-. .....+.+.+.. ++
T Consensus 859 ~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEG-G~~p~~~~-~~~~~~i~QiaS-GrFGv~~e~l~~-----a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEG-GEDPARYG-TEKVSKIKQVAS-GRFGVTPAYLVN-----AE 929 (1485)
T ss_pred cccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCC-CCCHHHHh-cccCCeEEEccC-CcCCCCHHHhcc-----CC
Confidence 36899999998764 46778999999999988766655 34555542 222456888753 333333334432 56
Q ss_pred EEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCccccccch-hhHHHhhhccCccc-cHH-------HHHhhc
Q 017718 152 AIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDS-GLAAYVAGQIDRSL-SWK-------WLQTIT 221 (367)
Q Consensus 152 ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~-~~~-------~l~~~~ 221 (367)
.|-|.+.--.. --.|.++|. |++. - +++.... .....+++.+++++ +.+ .||+..
T Consensus 930 ~ieIKi~QGAK------PG~GG~Lpg~KV~~-~--------IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~ 994 (1485)
T PRK11750 930 VLQIKVAQGAK------PGEGGQLPGDKVNP-L--------IARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVN 994 (1485)
T ss_pred EEEEEecCCCC------CCCCCcCccccCCH-H--------HHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhC
Confidence 66665542221 001222332 2220 0 0000000 00112222233343 322 677766
Q ss_pred -CCCEEEEecCC--H-HHHHHHHHcCCcEEEEcCCC-CCC-------CCCccchHHHHHHHHHHh-----cCCCcEEEec
Q 017718 222 -KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDG 284 (367)
Q Consensus 222 -~~Pv~vK~v~~--~-~~a~~~~~~G~d~i~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~~~via~G 284 (367)
+.||.||.+.. . ..+.-+.++|+|.|+++||. |+. -+.|.|....|.++.+.+ ++++.|+++|
T Consensus 995 ~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~G 1074 (1485)
T PRK11750 995 PKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDG 1074 (1485)
T ss_pred CCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence 57999999843 2 23445778999999999984 442 134666556677776654 4689999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhhcc----------------------------ChHHHHHHHHHHHHHHHHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFELAM 336 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~----------------------------G~~~v~~~i~~l~~el~~~m 336 (367)
|++|+.|++|+++||||.|.+||++|++++|. .++.|.+++..+.+|++.+|
T Consensus 1075 gl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~l 1154 (1485)
T PRK11750 1075 GLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWM 1154 (1485)
T ss_pred CcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998762 13579999999999999999
Q ss_pred HHhCCCChhhh
Q 017718 337 ALSGCRSLKEI 347 (367)
Q Consensus 337 ~~~G~~si~~l 347 (367)
..+|.++++|+
T Consensus 1155 a~lG~~s~~el 1165 (1485)
T PRK11750 1155 AQLGVRSLEDL 1165 (1485)
T ss_pred HHhCCCCHHHh
Confidence 99999999999
No 65
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.65 E-value=1.2e-14 Score=140.48 Aligned_cols=184 Identities=22% Similarity=0.245 Sum_probs=129.9
Q ss_pred eEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------HhhCCCceEEEEeecCCHH
Q 017718 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~QLy~~~d~~ 136 (367)
+++| +..||+.+||++.+ +..++.++.++|...+++... .+.|++ .+....|+.+.+.... +.
T Consensus 6 ~~lg--i~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-~~ 75 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLS-PF 75 (307)
T ss_pred HHhC--CCCCEEcCCCCCCC------CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCC-CC
Confidence 3455 66899999998753 568999999999888876432 334433 2222245555543221 11
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHH
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKW 216 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (367)
..+.++.+.+.|++.+.++.+.| .-..++
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g~p--------------------------------------------------~~~i~~ 104 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAGNP--------------------------------------------------GKYIPR 104 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCCCc--------------------------------------------------HHHHHH
Confidence 23456666677877766533211 001125
Q ss_pred HHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 217 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 217 l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
+|+. +++|+. .+.+.++++.+.++|+|+|+++++ ||+. +..+++..++++++.+ ++|||++|||.+++|+.+
T Consensus 105 lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~ 178 (307)
T TIGR03151 105 LKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAA 178 (307)
T ss_pred HHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHH
Confidence 5543 677765 678999999999999999999875 4442 3345889999999877 799999999999999999
Q ss_pred HHHcCCCEEEechHHHHHhh
Q 017718 295 ALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~~l~ 314 (367)
++++|||+|++||.|+....
T Consensus 179 al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 179 AFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHHcCCCEeecchHHhcccc
Confidence 99999999999999987543
No 66
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.61 E-value=4.4e-14 Score=138.02 Aligned_cols=93 Identities=30% Similarity=0.467 Sum_probs=69.2
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++ .++.++. .+.+.++|+.+.+.|+|+|++.|. ||+.. +.+ +++.+++++++.+ ++|||+.|||.++.++
T Consensus 131 ~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPViaAGGI~dg~~i 205 (330)
T PF03060_consen 131 RLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVIAAGGIADGRGI 205 (330)
T ss_dssp HHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EEEESS--SHHHH
T ss_pred HHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEEEecCcCCHHHH
Confidence 4443 5777765 578999999999999999999874 66644 222 6888899999888 7999999999999999
Q ss_pred HHHHHcCCCEEEechHHHHHh
Q 017718 293 FKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~~l 313 (367)
..+|++|||+|++||.|+...
T Consensus 206 aaal~lGA~gV~~GTrFl~t~ 226 (330)
T PF03060_consen 206 AAALALGADGVQMGTRFLATE 226 (330)
T ss_dssp HHHHHCT-SEEEESHHHHTST
T ss_pred HHHHHcCCCEeecCCeEEecc
Confidence 999999999999999998643
No 67
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.61 E-value=1.4e-14 Score=133.88 Aligned_cols=149 Identities=14% Similarity=0.107 Sum_probs=110.9
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.+..+|+. ..+++...+.++.+++ +++.|.||+.||++ ++...+ .+.
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~~~g----------------~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EITEIG----------------IGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHcCCC----------------Cch
Confidence 57899987 6788888888888766 89999999999983 011000 112
Q ss_pred HhhhccCccc--cH-HHHHhhcCCCEEEEecCC------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH
Q 017718 203 YVAGQIDRSL--SW-KWLQTITKLPILVKGVLT------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 273 (367)
Q Consensus 203 ~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~ 273 (367)
.+.. |++. .+ +.+++ .++||++|+... .+.++.+.++|+|+|.|+ .++. ..+...++.++++++.
T Consensus 115 ~Ll~--dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~-g~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELLK--NKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD--AMYP-GKPYADMDLLKILSEE 188 (231)
T ss_pred hhcC--CHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe--eCCC-CCchhhHHHHHHHHHh
Confidence 2333 3333 22 25663 589999999852 256899999999999994 3321 1122688999999987
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
++ .+|||++|||.+.+|+.+++..|||+||+||+.+.
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 72 49999999999999999999999999999998875
No 68
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.51 E-value=9.9e-14 Score=134.11 Aligned_cols=135 Identities=27% Similarity=0.378 Sum_probs=103.7
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----C--CCCccchHHHHHHHHHHhc-CCCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ-GRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~ 287 (367)
|+|+.+ .+.|+...+.+.+.|+.++++|||++.|.-..|. | ..-|.+...++.++.+... -.+|||+||||+
T Consensus 285 ~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq 364 (503)
T KOG2550|consen 285 YIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQ 364 (503)
T ss_pred HHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcC
Confidence 888887 4778888889999999999999999999643332 2 2335555555555554332 279999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHH--------------------HH------Hhh----------------ccCh-------
Q 017718 288 RGTDVFKALALGASGIFIGRPV--------------------VY------SLA----------------AEGE------- 318 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~--------------------l~------~l~----------------~~G~------- 318 (367)
+..++.|||.+||++||+|..+ .+ ++. ++|.
T Consensus 365 ~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvkiAQGVsg~v~dK 444 (503)
T KOG2550|consen 365 NVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKIAQGVSGSVQDK 444 (503)
T ss_pred ccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEeeccCcEEEeccC
Confidence 9999999999999999999844 11 111 0121
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 319 KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 319 ~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
..+.+++..+...++..+...|++|+++++..
T Consensus 445 Gsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 445 GSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred cchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 23889999999999999999999999999854
No 69
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.51 E-value=2.3e-12 Score=119.63 Aligned_cols=188 Identities=24% Similarity=0.298 Sum_probs=127.5
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHH-------HHhhCCCceEEEEeecCCHHHHHHHHH
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRNVVAQLVR 143 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~-------i~~~~~~~~~~QLy~~~d~~~~~~~l~ 143 (367)
..|++.|||.+.+ +..+++++.+.|....++... .+.++ +.+....+..+++..........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999998764 678999999998644443221 12222 222221345577764321134557788
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCC
Q 017718 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKL 223 (367)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 223 (367)
.+.++|++.+.++-+.+. -..+++++ .++
T Consensus 75 ~~~~~g~d~v~l~~~~~~--------------------------------------------------~~~~~~~~-~~i 103 (236)
T cd04730 75 VALEEGVPVVSFSFGPPA--------------------------------------------------EVVERLKA-AGI 103 (236)
T ss_pred HHHhCCCCEEEEcCCCCH--------------------------------------------------HHHHHHHH-cCC
Confidence 899999999877433100 00113333 367
Q ss_pred CEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 224 PILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 224 Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd 301 (367)
+++++ +.+.+.++.+.+.|+|+|.+.+. ||+........++.+.++++.. ++||++.|||++++|+.+++.+|||
T Consensus 104 ~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~Gad 180 (236)
T cd04730 104 KVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGAD 180 (236)
T ss_pred EEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCc
Confidence 77765 45678899999999999998653 2222111134677888888766 7999999999999999999999999
Q ss_pred EEEechHHHHHhhccChH
Q 017718 302 GIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 302 ~V~ig~~~l~~l~~~G~~ 319 (367)
+|++||.++....+.+..
T Consensus 181 gV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 181 GVQMGTRFLATEESGASP 198 (236)
T ss_pred EEEEchhhhcCcccCCCH
Confidence 999999999876554444
No 70
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.43 E-value=7.6e-12 Score=120.63 Aligned_cols=182 Identities=16% Similarity=0.201 Sum_probs=124.6
Q ss_pred ccceEeCcccchhccCChhh-HHHHHHHHHcCCceeecCCCCCCHHHHH-------hh-CCCceEEEEeecCCHHHHHHH
Q 017718 71 SMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEVA-------ST-GPGIRFFQLYVYKDRNVVAQL 141 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e-~~~a~aa~~~G~~~~vs~~~~~~~e~i~-------~~-~~~~~~~QLy~~~d~~~~~~~ 141 (367)
..||+-+||++.+ + ..|+.+..++|..-+++.. ..+.|++. +. ...|+.+.|....+.....+.
T Consensus 2 ~yPIiqgpM~~vs------~~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~ 74 (320)
T cd04743 2 RYPIVQGPMTRVS------DVAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQ 74 (320)
T ss_pred CCCEECCCcCCCC------CcHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHH
Confidence 5799999998754 3 5899999999987666532 23444322 21 225666665322222334456
Q ss_pred HHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhc
Q 017718 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTIT 221 (367)
Q Consensus 142 l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 221 (367)
++.+.+.+.+.+.++.+.|. ..+.+++ .
T Consensus 75 l~vi~e~~v~~V~~~~G~P~---------------------------------------------------~~~~lk~-~ 102 (320)
T cd04743 75 LAVVRAIKPTFALIAGGRPD---------------------------------------------------QARALEA-I 102 (320)
T ss_pred HHHHHhcCCcEEEEcCCChH---------------------------------------------------HHHHHHH-C
Confidence 67777777776665433220 0124443 4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhc--------CCCcEEEecCCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~~~via~GGI~~~~d 291 (367)
+++++. .+.+++.|+++.++|+|+|++.|+ ||+. +..+++.+++++.+.+. .++|||+.|||.++..
T Consensus 103 Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~ 179 (320)
T cd04743 103 GISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERS 179 (320)
T ss_pred CCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHH
Confidence 777764 468999999999999999999885 6653 23455556666655541 2699999999999999
Q ss_pred HHHHHHcCC--------CEEEechHHHHHhh
Q 017718 292 VFKALALGA--------SGIFIGRPVVYSLA 314 (367)
Q Consensus 292 v~kal~lGA--------d~V~ig~~~l~~l~ 314 (367)
+..++++|| ++|++||.|+..-.
T Consensus 180 ~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~E 210 (320)
T cd04743 180 AAMVSALAAPLAERGAKVGVLMGTAYLFTEE 210 (320)
T ss_pred HHHHHHcCCcccccccccEEEEccHHhcchh
Confidence 999999999 89999999988543
No 71
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.42 E-value=3.5e-12 Score=124.51 Aligned_cols=97 Identities=32% Similarity=0.478 Sum_probs=80.5
Q ss_pred HHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCC--CCccchHHHHHHHHHHhcCC-CcEEEecCCCCH
Q 017718 215 KWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGGVRRG 289 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-~~via~GGI~~~ 289 (367)
+.++. .+.+++.+ +.+...|++++++|+|+|++.+. ||+.- +..+++..+++++++++ + +|||+.|||.++
T Consensus 121 ~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg 196 (336)
T COG2070 121 ARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADG 196 (336)
T ss_pred HHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccCh
Confidence 35554 56677654 57899999999999999999764 55532 34677899999999998 5 999999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 290 TDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
.++..+|++||++|++||.|+..-.|
T Consensus 197 ~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 197 RGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred HHHHHHHHhccHHHHhhhhhhccccc
Confidence 99999999999999999999875443
No 72
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.29 E-value=2e-10 Score=112.50 Aligned_cols=222 Identities=19% Similarity=0.171 Sum_probs=133.7
Q ss_pred ceeEcCeeeccceEeCcccchhcc----CC-hhhHHHHHHHHHcCCceeecCCCCC--------------CHH------H
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMA----HP-EGEYATARAASAAGTIMTLSSWSTS--------------SVE------E 116 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~----~~-~~e~~~a~aa~~~G~~~~vs~~~~~--------------~~e------~ 116 (367)
..+|.+.++++-|+.+||+...-. .+ +....+-+.-++-|+.+++++.... +.+ +
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 477889999999999999532211 11 2234566666667888876543110 111 1
Q ss_pred HHhh---CCCceEEEEeecCC---------------------------HH-------HHHHHHHHHHHcCCcEEEEecCC
Q 017718 117 VAST---GPGIRFFQLYVYKD---------------------------RN-------VVAQLVRRAERAGFKAIALTVDT 159 (367)
Q Consensus 117 i~~~---~~~~~~~QLy~~~d---------------------------~~-------~~~~~l~ra~~~G~~ai~itvd~ 159 (367)
+.+. .....++||+-... .+ ...+.+++|+++||+++.||...
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2211 22467888853111 11 12334567788999999999873
Q ss_pred CCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecC-----
Q 017718 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVL----- 231 (367)
Q Consensus 160 p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~----- 231 (367)
-. +-+.|--|. .+.++ .+-.++ +. . ...| . .+.+|+.++.||.+|+..
T Consensus 166 Gy-------Ll~qFlSp~-~N~Rt---------D~yGGs-le---n---R~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 166 GY-------LINEFLSPL-SNKRT---------DEYGGS-PE---N---RYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred ch-------HHHHhcCCc-cCCcC---------CCCCCC-HH---H---HHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 11 112221010 00000 000111 10 0 0112 1 237888888899999973
Q ss_pred ---CHHH----HHHHHHcCCcEEEEcCCCCCCC----CC-ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 232 ---TAED----ARIAVQAGAAGIIVSNHGARQL----DY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 232 ---~~~~----a~~~~~~G~d~i~vs~~gg~~~----~~-~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
+.++ ++.+.++|+|.|.|+. |+.. .. ....++...++++.+ ++||+++|+|++++++.++|+-|
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~--g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g 297 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSS--GAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNN 297 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCC--CCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcC
Confidence 4443 6788899999999964 3311 11 111456667777766 79999999999999999999987
Q ss_pred -CCEEEechHHHH
Q 017718 300 -ASGIFIGRPVVY 311 (367)
Q Consensus 300 -Ad~V~ig~~~l~ 311 (367)
||+|++||+++-
T Consensus 298 ~~D~V~~gR~~ia 310 (337)
T PRK13523 298 RADLIFIGRELLR 310 (337)
T ss_pred CCChHHhhHHHHh
Confidence 999999999985
No 73
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.28 E-value=3.6e-10 Score=112.62 Aligned_cols=215 Identities=19% Similarity=0.165 Sum_probs=126.1
Q ss_pred eccceEeCccc-chhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-------hh-C-CCceEEEEeec-CCHHHH
Q 017718 70 ISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-KDRNVV 138 (367)
Q Consensus 70 l~~Pi~iAPm~-~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~-------~~-~-~~~~~~QLy~~-~d~~~~ 138 (367)
+..|++.+||+ +.+ ...|+.+..++|..-.++... .+.+++. +. . ..|+.+.|+.. .+++..
T Consensus 12 iryPii~gpMa~Gis------s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e 84 (418)
T cd04742 12 LRYAYVAGAMARGIA------SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELE 84 (418)
T ss_pred CCccEECCcccCCCC------CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhH
Confidence 67899999997 443 468999999999888887543 3455443 21 2 35788888753 345555
Q ss_pred HHHHHHHHHcCCcEEEEe--cCC-CCCCchhHHhhhhcCC-CCc-cccccccccccCcccc-ccchhhHHHhhhccCccc
Q 017718 139 AQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTL-PPF-LTLKNFQGLDLGKMDE-ANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~it--vd~-p~~g~r~~~~~~~~~~-p~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 212 (367)
.+.++.+.+.|.+.+... .+. |.. .+.++ .|+.. +.+ +..++ ..+.+ +... ..+..... .+.-
T Consensus 85 ~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~------~ViakVsr~e-vAs~~f~p-pp~~ 153 (418)
T cd04742 85 EGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIAN------RIIAKVSRPE-VAEAFMSP-APER 153 (418)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccc------eEEEecCChh-hhhhhcCC-CCHH
Confidence 667888888998876543 111 111 11111 01100 000 00000 00000 0000 11111110 0111
Q ss_pred cHHHHHhhcCCCEEEEecCCHHHHHHHHHcC-CcEEEEcC-CCCCCCCCccchHHHHHHHHHH---h------cCCCcEE
Q 017718 213 SWKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVKA---T------QGRIPVF 281 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G-~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~~---~------~~~~~vi 281 (367)
..+.+++. ++.+.++|+.+.+.| +|.|++.. .||+. +..++..+++.+.+. + ..++||+
T Consensus 154 ~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipVi 223 (418)
T cd04742 154 ILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYGYRRPIRVG 223 (418)
T ss_pred HHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccccCCCceEE
Confidence 22344332 223899999999999 59999974 36654 223455666666542 2 1259999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+.|||.|+.++..++++||++|++||.|+-.
T Consensus 224 AAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 224 AAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred EECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 9999999999999999999999999999764
No 74
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.27 E-value=1.2e-10 Score=114.92 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=150.7
Q ss_pred eccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCC-------HHH-HHhhCC--CceEEEEeecCCHHHHH
Q 017718 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-------VEE-VASTGP--GIRFFQLYVYKDRNVVA 139 (367)
Q Consensus 70 l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~-------~e~-i~~~~~--~~~~~QLy~~~d~~~~~ 139 (367)
+.--.++||.+-. ||++|+|.|.++|...+.|+|+-+. -|- +...++ ..+.+||- +..++.+.
T Consensus 263 ~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQla-g~~pdt~~ 335 (614)
T KOG2333|consen 263 FRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLA-GSKPDTAA 335 (614)
T ss_pred cccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEec-cCChHHHH
Confidence 4457889997544 4889999999999999999986431 111 222222 57889997 55666665
Q ss_pred HHHHHH-HHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc-HHHH
Q 017718 140 QLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-WKWL 217 (367)
Q Consensus 140 ~~l~ra-~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~l 217 (367)
..++.+ +....+.|+||++||.. +.. + .+.+++ ++.-+..-+. ....
T Consensus 336 kaaq~i~e~~~VDFIDlN~GCPID------lvy----------~-----------qG~GsA----Ll~rp~rl~~~l~~m 384 (614)
T KOG2333|consen 336 KAAQVIAETCDVDFIDLNMGCPID------LVY----------R-----------QGGGSA----LLNRPARLIRILRAM 384 (614)
T ss_pred HHHHHHHhhcceeeeeccCCCChh------eee----------c-----------cCCcch----hhcCcHHHHHHHHHH
Confidence 555544 34679999999999973 210 0 112222 2211000001 1122
Q ss_pred Hhhc-CCCEEEEecCCH--------HHHHHHH-HcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 218 QTIT-KLPILVKGVLTA--------EDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v~~~--------~~a~~~~-~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.... .+||.||+.+.. +-...+. +-|+++|++++...-|-++..+.|+.+.++.+.+...+|+|++|.|.
T Consensus 385 ~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~ 464 (614)
T KOG2333|consen 385 NAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDIL 464 (614)
T ss_pred HHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccc
Confidence 2333 469999998421 2233344 89999999944333466788889999999998886569999999999
Q ss_pred CHHHHHHHHHcC--CCEEEech-----HHHHHhhccCh---HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 288 RGTDVFKALALG--ASGIFIGR-----PVVYSLAAEGE---KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 288 ~~~dv~kal~lG--Ad~V~ig~-----~~l~~l~~~G~---~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
|.+|-.+.+..+ -+.|||+| ||||...-+-. ..-.+-++.|++=...-|+..|..
T Consensus 465 S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSD 529 (614)
T KOG2333|consen 465 SWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSD 529 (614)
T ss_pred cHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCc
Confidence 999999998876 89999999 88886432100 000123444555555555555543
No 75
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.26 E-value=4.3e-10 Score=99.75 Aligned_cols=184 Identities=24% Similarity=0.248 Sum_probs=118.3
Q ss_pred eEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCC-------CC---HHHHHhhCCCceEEEEeecCCHHHHHHHH
Q 017718 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (367)
Q Consensus 74 i~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~-------~~---~e~i~~~~~~~~~~QLy~~~d~~~~~~~l 142 (367)
|++++|..+.. +.....++.+.+.|+.++.. +... .. ++.+......+..+|++.....+.....+
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765421 23467899999998766532 2211 11 33333334467899998654444444446
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHHHHhhc
Q 017718 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKWLQTIT 221 (367)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~l~~~~ 221 (367)
++++++|++.+.++..++.. | + ... ..+++++.+
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-------------~-------------------------~-------~~~~~~~~i~~~~ 112 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-------------A-------------------------R-------EDLELIRELREAV 112 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-------------H-------------------------H-------HHHHHHHHHHHhc
Confidence 78899999999998876531 0 0 000 123667766
Q ss_pred -CCCEEEEecCCHHHHHH-HHHcCCcEEEEcCCCCCCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 222 -KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 222 -~~Pv~vK~v~~~~~a~~-~~~~G~d~i~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
++|+++|.....+.... +.+.|+|+|.++++.+.+...... ....+..+.... ++||+++|||.+++++.+++.
T Consensus 113 ~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~~~ 190 (200)
T cd04722 113 PDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALA 190 (200)
T ss_pred CCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHH
Confidence 79999998754332222 688999999998764433222221 123344443333 799999999999999999999
Q ss_pred cCCCEEEech
Q 017718 298 LGASGIFIGR 307 (367)
Q Consensus 298 lGAd~V~ig~ 307 (367)
+|||+|++||
T Consensus 191 ~Gad~v~vgs 200 (200)
T cd04722 191 LGADGVIVGS 200 (200)
T ss_pred hCCCEEEecC
Confidence 9999999996
No 76
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.23 E-value=1.3e-09 Score=109.23 Aligned_cols=221 Identities=19% Similarity=0.190 Sum_probs=127.7
Q ss_pred eEcCeeeccceEeCccc-chhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-------hhCC-Cc-eEEEEeecC
Q 017718 64 TVLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGP-GI-RFFQLYVYK 133 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~-~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~-------~~~~-~~-~~~QLy~~~ 133 (367)
+++| +..|++.+||+ +.+ ...|+.+..++|....++... .+++++. +..+ ++ +.+.|+...
T Consensus 13 ~~lg--iryPiiqgpMa~GiS------s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~ 83 (444)
T TIGR02814 13 EDYG--VRYAYVAGAMANGIA------SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSP 83 (444)
T ss_pred HHhC--CCCcEECccccCCCC------CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccC
Confidence 3444 67899999997 332 568999999999888887543 4555543 2222 35 888887543
Q ss_pred -CHHHHHHHHHHHHHcCCcEEEEec--C-CCCCCchhHHhhhhcCCCC--ccccccccccccCccccccchhhHHHhhhc
Q 017718 134 -DRNVVAQLVRRAERAGFKAIALTV--D-TPRLGRREADIKNRFTLPP--FLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (367)
Q Consensus 134 -d~~~~~~~l~ra~~~G~~ai~itv--d-~p~~g~r~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (367)
+++...++++.+.+.|.+.+...- + +|.. .+.+. .|+.... .+..++ ..+.+-......+....
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~------~ViakVsr~~vAs~f~~- 153 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRN------RLIAKVSRPEVAEAFMS- 153 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccc------eEEEecCCHHHHHHhcC-
Confidence 344444567777788888765431 1 1211 11100 0110000 000000 00000000001111110
Q ss_pred cCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcC-CcEEEEcC-CCCCCCCCccchHHHHHHHHH---Hh------cC
Q 017718 208 IDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT------QG 276 (367)
Q Consensus 208 ~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G-~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~---~~------~~ 276 (367)
+.+.-..+.|++ .++.+.++|+.+.+.| +|.|++.. .||+. +..++..+++++.+ .+ ..
T Consensus 154 p~p~~~v~~L~~--------~G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~ 223 (444)
T TIGR02814 154 PAPAHILQKLLA--------EGRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRK 223 (444)
T ss_pred CCcHHHHHHHHH--------cCCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCC
Confidence 011112233332 2234999999999999 49888863 36654 23456677777753 33 12
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 277 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
++||++.|||.|+.++..++++|||+|++||.|+-..
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 6899999999999999999999999999999998643
No 77
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.21 E-value=5.9e-10 Score=108.63 Aligned_cols=95 Identities=24% Similarity=0.253 Sum_probs=73.4
Q ss_pred HHHHhhc--CCCEEEEecC--------CHHH----HHHHHHcCCcEEEEcCCCCCCCCC--------ccchHHHHHHHHH
Q 017718 215 KWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATIMALEEVVK 272 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~--------~~~~----a~~~~~~G~d~i~vs~~gg~~~~~--------~~~~~~~l~~i~~ 272 (367)
+.+|+.+ ++||.+|... +.++ ++.+.++|+|+|.+++....+... ....++.+..+++
T Consensus 199 ~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 199 AAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred HHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 3788877 6899999873 2333 678899999999997633221111 1234566777877
Q ss_pred HhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHHH
Q 017718 273 ATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 273 ~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l~ 311 (367)
.+ ++||+++|||++++++.+++.. |||+|++||+++.
T Consensus 279 ~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 279 AV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 77 7999999999999999999998 7999999999985
No 78
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.19 E-value=5.4e-11 Score=113.11 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=169.5
Q ss_pred eccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhh--------
Q 017718 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-------- 120 (367)
Q Consensus 49 ~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~-------- 120 (367)
.|..|..++++|.+++..|.+.++||.++.- .|-....+.+-|-..|-++...---+..-..|...
T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~------Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~ 164 (471)
T KOG1799|consen 91 GLKALLYLKSIEELVDWDGQKPANPFHQKSK------PPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSP 164 (471)
T ss_pred chhhhcchhhhhhhccccCccCCCccccCCC------CCCccHHHHHhhhhcccchhheeeeecchhhheecccceeecc
Confidence 3566667889999999999999999988763 23335678888888887776531100000000000
Q ss_pred ------CC-CceEEE--Eee-----------------------------cCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 121 ------GP-GIRFFQ--LYV-----------------------------YKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 121 ------~~-~~~~~Q--Ly~-----------------------------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
.| ++.|.. |.. -.+..-..++..+.+++|.+.+-+|+.||..
T Consensus 165 t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphg 244 (471)
T KOG1799|consen 165 TKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHG 244 (471)
T ss_pred CCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCC
Confidence 01 111110 000 0011224567788888999999999988862
Q ss_pred CchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCH----H
Q 017718 163 GRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTA----E 234 (367)
Q Consensus 163 g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~----~ 234 (367)
++. ++... +. .++.++-+ |++....+|++.|...+. +
T Consensus 245 ------------m~ergmgla---------------------~g--q~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~re 289 (471)
T KOG1799|consen 245 ------------MCERGMGLA---------------------LG--QCPIVDCEVCGWINAKATIPMVSKMTPNITDKRE 289 (471)
T ss_pred ------------Cccccccce---------------------ec--cChhhhHHHhhhhhhccccccccccCCCcccccc
Confidence 121 11111 11 13444333 999889999999998765 4
Q ss_pred HHHHHHHcCCcEEEEcCCC------------------CCCCCCc-------cchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 235 DARIAVQAGAAGIIVSNHG------------------ARQLDYV-------PATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~g------------------g~~~~~~-------~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.|+.+.+.|+.+|...|+- |+.-.+| |.++..+..|++.++ ..|+.+.|||.++
T Consensus 290 var~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~ 368 (471)
T KOG1799|consen 290 VARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETG 368 (471)
T ss_pred cchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcccc
Confidence 4778888999999876620 1111122 334555666666664 7999999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 290 TDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
.|.+..|.+|++.|++++..+. +|.. .++.+..||+..|.+.|..+|++++++.|.
T Consensus 369 ~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 369 YDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSLQ 424 (471)
T ss_pred cchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcchh
Confidence 9999999999999999998764 5654 456788999999999999999999998654
No 79
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.13 E-value=7.1e-09 Score=101.94 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=67.6
Q ss_pred HHHHhhcCC--CEEEEecC--------CHHH----HHHHHHcC-CcEEEEcCCCCCCC-----------CCcc-chHHHH
Q 017718 215 KWLQTITKL--PILVKGVL--------TAED----ARIAVQAG-AAGIIVSNHGARQL-----------DYVP-ATIMAL 267 (367)
Q Consensus 215 ~~l~~~~~~--Pv~vK~v~--------~~~~----a~~~~~~G-~d~i~vs~~gg~~~-----------~~~~-~~~~~l 267 (367)
+.+|+.++. ||.+|+.. +.++ ++.+.++| +|.|.||. |...- .... ..++..
T Consensus 199 ~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 199 AAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA-GSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred HHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC-CCCCcccccccccCCCCCCcchhHHHH
Confidence 388888865 45555442 2333 67888898 89999963 22110 0111 135667
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 268 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 268 ~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
..+++.+ ++|||++|||++.+++.+++..| ||+|++||+++.
T Consensus 278 ~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 278 ARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred HHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 7777777 79999999999999999999975 999999999985
No 80
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.09 E-value=1.1e-08 Score=100.44 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=72.0
Q ss_pred HHHHhhc--CCCEEEEec--------CCHHH----HHHHHHcCCcEEEEcCCCCC--CC-CCcc-chHHHHHHHHHHhcC
Q 017718 215 KWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMALEEVVKATQG 276 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v--------~~~~~----a~~~~~~G~d~i~vs~~gg~--~~-~~~~-~~~~~l~~i~~~~~~ 276 (367)
+.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|+|.++..+.+ +. ...+ ...+.+.++++.+
T Consensus 212 ~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~-- 289 (336)
T cd02932 212 DAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA-- 289 (336)
T ss_pred HHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--
Confidence 3888888 689999966 23443 56778899999999753221 11 1111 1346677777777
Q ss_pred CCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 277 RIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||+++|||.+++++.++|..| ||+|++||+++.
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 79999999999999999999998 999999999985
No 81
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.06 E-value=1.3e-08 Score=93.99 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=72.4
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+++..++|+++ .+.+.++++.+.+.|+|+|.++++|-+.. .......+.++++++.+ ++||++.|||++++|+.
T Consensus 113 ~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~ 189 (221)
T PRK01130 113 RIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAK 189 (221)
T ss_pred HHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHH
Confidence 444324677754 67789999999999999998765443221 22344577888888877 79999999999999999
Q ss_pred HHHHcCCCEEEechHHH
Q 017718 294 KALALGASGIFIGRPVV 310 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l 310 (367)
+++++|||+|++|+.++
T Consensus 190 ~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 190 KALELGAHAVVVGGAIT 206 (221)
T ss_pred HHHHCCCCEEEEchHhc
Confidence 99999999999999875
No 82
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.02 E-value=1.2e-08 Score=100.63 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=69.3
Q ss_pred HHHHhhcC------CCEEEEecC--------CHH----HHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHh
Q 017718 215 KWLQTITK------LPILVKGVL--------TAE----DARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKAT 274 (367)
Q Consensus 215 ~~l~~~~~------~Pv~vK~v~--------~~~----~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~ 274 (367)
+.+|+.++ .||.+|... +.+ .++.+.++|+|+|.|+..+.+. ........+.+.++++.+
T Consensus 202 ~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~ 281 (353)
T cd04735 202 KAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERI 281 (353)
T ss_pred HHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHh
Confidence 37887764 466666652 233 3678889999999997532211 111122344555666655
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 275 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 275 ~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
..++|||++|||++++++.++++.|||+|++||+++.
T Consensus 282 ~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 282 AGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 4479999999999999999999999999999999985
No 83
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.01 E-value=2.7e-08 Score=99.26 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=69.7
Q ss_pred HHHHhhc--CCCEEEEecC----------------------CHHH----HHHHHHcCCcEEEEcCCCCC--CCC-C----
Q 017718 215 KWLQTIT--KLPILVKGVL----------------------TAED----ARIAVQAGAAGIIVSNHGAR--QLD-Y---- 259 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~----------------------~~~~----a~~~~~~G~d~i~vs~~gg~--~~~-~---- 259 (367)
+.+|+.+ +.||.+|+.. +.++ ++.+.++|+|+|.|+. |+ +.. .
T Consensus 209 ~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~ 286 (382)
T cd02931 209 EEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA--GSYDAWYWNHPPM 286 (382)
T ss_pred HHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC--CCCcccccccCCc
Confidence 3888887 4699999863 2233 6778889999999964 32 111 1
Q ss_pred --ccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 260 --VPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 260 --~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
... .++....+++.+ ++||+++|||++++++.++|+-| ||+|++||+++.
T Consensus 287 ~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 287 YQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred cCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 111 134566777776 79999999999999999999976 999999999975
No 84
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.00 E-value=3e-08 Score=91.42 Aligned_cols=93 Identities=24% Similarity=0.283 Sum_probs=73.9
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
++++..++|+++ .+.+.+++..+.++|+|+|.+.++|-+. .......++.+.++++.+ ++||++.|||++++|+.
T Consensus 117 ~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~ 193 (219)
T cd04729 117 RIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAA 193 (219)
T ss_pred HHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHH
Confidence 555544577766 5678899999999999999776554322 122335678888888877 79999999999999999
Q ss_pred HHHHcCCCEEEechHHHH
Q 017718 294 KALALGASGIFIGRPVVY 311 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~ 311 (367)
+++.+|||+|++|+.++.
T Consensus 194 ~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 194 KALELGADAVVVGSAITR 211 (219)
T ss_pred HHHHCCCCEEEEchHHhC
Confidence 999999999999998764
No 85
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.97 E-value=6.3e-08 Score=95.69 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=67.9
Q ss_pred HHHHhhc--CCCEEEEecC------------CHHH----HHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHh
Q 017718 215 KWLQTIT--KLPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKAT 274 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~------------~~~~----a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~ 274 (367)
+.+|+.+ +.||.+|+.. +.++ ++.+.++|+|.|.++. |.. +...+ .......++++.+
T Consensus 202 ~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~-g~~~~~~~~~-~~~~~~~~~k~~~ 279 (361)
T cd04747 202 KAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCST-RRFWEPEFEG-SELNLAGWTKKLT 279 (361)
T ss_pred HHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecC-CCccCCCcCc-cchhHHHHHHHHc
Confidence 3888887 4799999872 2233 5567899999999875 211 11111 2344555666666
Q ss_pred cCCCcEEEecCC------------------CCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 275 QGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 275 ~~~~~via~GGI------------------~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||+++|+| ++++++.++|.-| ||+|++||+++.
T Consensus 280 --~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 280 --GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred --CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 7999999999 6999999999976 999999999875
No 86
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.91 E-value=7.5e-08 Score=95.08 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHhhcC--CCEEEEecC--------CHHH----HHHHHHcCCcEEEEcC--CCCCCCC----Cccc-hHHHHHHHHHH
Q 017718 215 KWLQTITK--LPILVKGVL--------TAED----ARIAVQAGAAGIIVSN--HGARQLD----YVPA-TIMALEEVVKA 273 (367)
Q Consensus 215 ~~l~~~~~--~Pv~vK~v~--------~~~~----a~~~~~~G~d~i~vs~--~gg~~~~----~~~~-~~~~l~~i~~~ 273 (367)
+.+|+..+ .||.+|+.. +.++ ++.+.++|+|+|.||. |..+... .... ..+...++++.
T Consensus 195 ~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~ 274 (353)
T cd02930 195 RAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA 274 (353)
T ss_pred HHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh
Confidence 37888774 567766652 3333 6788899999999974 2222111 1111 23445677777
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+ ++||+++|++++.+++.++++.| +|+|++||+++.
T Consensus 275 v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 275 V--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred C--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 6 89999999999999999999976 999999999875
No 87
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.90 E-value=2.6e-07 Score=100.07 Aligned_cols=94 Identities=24% Similarity=0.232 Sum_probs=69.5
Q ss_pred HHHHhhc--CCCEEEEecC--------CH----HHHHHHHHcCCcEEEEcCCCCCCCC----Ccc-chHHHHHHHHHHhc
Q 017718 215 KWLQTIT--KLPILVKGVL--------TA----EDARIAVQAGAAGIIVSNHGARQLD----YVP-ATIMALEEVVKATQ 275 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~--------~~----~~a~~~~~~G~d~i~vs~~gg~~~~----~~~-~~~~~l~~i~~~~~ 275 (367)
+.+|+.+ +.||.+|+.. +. +.++.+.++|+|.|.||. |++... .++ .......++++.+
T Consensus 609 ~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~~~~~~ik~~~- 686 (765)
T PRK08255 609 RAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSS-GQVSKDEKPVYGRMYQTPFADRIRNEA- 686 (765)
T ss_pred HHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCC-CCCCcCCCCCcCccccHHHHHHHHHHc-
Confidence 3788876 4799999973 23 336788999999999963 222111 111 1233445666666
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 276 GRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||+++|+|++++++.++|..| ||+|++||+++.
T Consensus 687 -~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 687 -GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred -CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 79999999999999999999976 999999999985
No 88
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.89 E-value=3.9e-08 Score=96.55 Aligned_cols=93 Identities=18% Similarity=0.084 Sum_probs=71.6
Q ss_pred HHHHhhcCC-CEEEEecC-----------CH----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC
Q 017718 215 KWLQTITKL-PILVKGVL-----------TA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 215 ~~l~~~~~~-Pv~vK~v~-----------~~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
+.+|+.++. ||.+|+.. +. +.++.+.+.|+|.|.|+. |..........++...++++.+ ++
T Consensus 210 ~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~ik~~~--~i 286 (338)
T cd02933 210 DAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE-PRVAGNPEDQPPDFLDFLRKAF--KG 286 (338)
T ss_pred HHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCCCCcccccchHHHHHHHHHc--CC
Confidence 388887754 89999862 22 336788899999999963 3322112334567777888877 79
Q ss_pred cEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
|||++|||+ ++++.++++.| ||+|++||+++.
T Consensus 287 pvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 287 PLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred CEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 999999997 99999999976 999999999875
No 89
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.86 E-value=2.6e-08 Score=88.59 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=69.5
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+|+.. -+++..+.+.|++..+.++|+|.|-....|.+. .. ..+.++++.++.+. .+|||+.|+|.+++++.
T Consensus 87 ~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~tpe~a~ 160 (192)
T PF04131_consen 87 EIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHTPEQAA 160 (192)
T ss_dssp HHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--SHHHHH
T ss_pred HHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCCHHHHH
Confidence 677765 677889999999999999999999876666542 23 56789999998763 79999999999999999
Q ss_pred HHHHcCCCEEEechHHHH
Q 017718 294 KALALGASGIFIGRPVVY 311 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~ 311 (367)
++|.+||++|.+|+++--
T Consensus 161 ~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 161 KALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHTT-SEEEE-HHHH-
T ss_pred HHHhcCCeEEEECcccCC
Confidence 999999999999997753
No 90
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.82 E-value=7.8e-08 Score=94.40 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=70.3
Q ss_pred HHHhhc--CCCEEEEec--------CCHHH----HHHHHHcCCcEEEEcCCCCC--CCCCc---------cc--hHHHHH
Q 017718 216 WLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QLDYV---------PA--TIMALE 268 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--------~~~~~----a~~~~~~G~d~i~vs~~gg~--~~~~~---------~~--~~~~l~ 268 (367)
.+|+.. +.||.+|.. .+.++ ++.+.++|+|.|.|+. |+ +.... +. .++...
T Consensus 208 aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (338)
T cd04733 208 AIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAE 285 (338)
T ss_pred HHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHH
Confidence 788887 479999986 34443 6788899999999964 32 11110 01 145566
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 269 ~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++++.+ ++||+++|+|.+.+++.++++.| ||+|++||+++-
T Consensus 286 ~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 286 KIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 777777 79999999999999999999987 999999999974
No 91
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.81 E-value=1.4e-06 Score=86.11 Aligned_cols=95 Identities=28% Similarity=0.350 Sum_probs=69.1
Q ss_pred HHHHhhcC--CCEEEEecC---------CH----HHHHHHHHcC-CcEEEEcCCCCC---CCCCc-cc-hHHHHHHHHHH
Q 017718 215 KWLQTITK--LPILVKGVL---------TA----EDARIAVQAG-AAGIIVSNHGAR---QLDYV-PA-TIMALEEVVKA 273 (367)
Q Consensus 215 ~~l~~~~~--~Pv~vK~v~---------~~----~~a~~~~~~G-~d~i~vs~~gg~---~~~~~-~~-~~~~l~~i~~~ 273 (367)
+.+|+.++ .||.++++. +. +-++.+.+.| +|+|.+++-+.. ..... +. .......++..
T Consensus 207 ~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~ 286 (363)
T COG1902 207 DAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKA 286 (363)
T ss_pred HHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHh
Confidence 38888885 589999873 22 3378899999 799999862211 11111 11 12334445555
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+ .+|||++|+|++++.+.++++-| ||+|.+||+||.
T Consensus 287 ~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 287 V--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred c--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 5 69999999999999999999998 999999999985
No 92
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.75 E-value=9.3e-07 Score=87.88 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=64.2
Q ss_pred HHHHhhcC--CCEEEEecC----------CHHH----HHHHHHcCCcEEEEcCCCCCCC-----CC--ccchHHHHHHHH
Q 017718 215 KWLQTITK--LPILVKGVL----------TAED----ARIAVQAGAAGIIVSNHGARQL-----DY--VPATIMALEEVV 271 (367)
Q Consensus 215 ~~l~~~~~--~Pv~vK~v~----------~~~~----a~~~~~~G~d~i~vs~~gg~~~-----~~--~~~~~~~l~~i~ 271 (367)
+.+|+.++ .||.+|+.. +.++ ++.+.+ .+|.+.++. |.... .. ....++...+++
T Consensus 208 ~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~-g~~~~~~~~~~~~~~~~~~~~~~~ik 285 (370)
T cd02929 208 EDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNV-GDWANDGEDSRFYPEGHQEPYIKFVK 285 (370)
T ss_pred HHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecC-CCccccccccccCCccccHHHHHHHH
Confidence 38888874 567777651 2333 344544 489998864 21110 00 111245566777
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 272 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 272 ~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+.+ ++|||++|||++++++.++|..| ||+|++||+++-
T Consensus 286 ~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 286 QVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 766 79999999999999999999987 999999999984
No 93
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.75 E-value=2.4e-07 Score=85.13 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=65.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd 301 (367)
++-+++ .+.+.++++.+.+.|+|.+.+++..++. ..+..+.+.++++.++.++||++.|||.+++|+.+++.+|||
T Consensus 121 g~~~~v-~v~~~~e~~~~~~~g~~~i~~t~~~~~~---~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~ 196 (217)
T cd00331 121 GMEVLV-EVHDEEELERALALGAKIIGINNRDLKT---FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGAD 196 (217)
T ss_pred CCeEEE-EECCHHHHHHHHHcCCCEEEEeCCCccc---cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCC
Confidence 444433 2468888999999999999885322222 233457777777765447899999999999999999999999
Q ss_pred EEEechHHHH
Q 017718 302 GIFIGRPVVY 311 (367)
Q Consensus 302 ~V~ig~~~l~ 311 (367)
+|.+|++++.
T Consensus 197 gvivGsai~~ 206 (217)
T cd00331 197 AVLIGESLMR 206 (217)
T ss_pred EEEECHHHcC
Confidence 9999998864
No 94
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.72 E-value=5.9e-06 Score=81.90 Aligned_cols=91 Identities=12% Similarity=-0.051 Sum_probs=64.5
Q ss_pred HHHHhhcC-CCEEEEec-----------CCHHH-----HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcC
Q 017718 215 KWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQG 276 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v-----------~~~~~-----a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~ 276 (367)
+.+|+.++ -+|.+|+. .+.++ ++.+.+.|+|+|.|+.. . .....+ ....-.++++.+
T Consensus 217 ~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~-~--~~~~~~~~~~~~~~ik~~~-- 291 (362)
T PRK10605 217 DAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP-D--WAGGEPYSDAFREKVRARF-- 291 (362)
T ss_pred HHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc-c--ccCCccccHHHHHHHHHHC--
Confidence 37777763 25888874 23333 57788899999999852 1 111111 223345566666
Q ss_pred CCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 277 RIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||++.|++ +++.+.++|+-| ||+|++||+++.
T Consensus 292 ~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 292 HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 6899999996 899999999988 999999999985
No 95
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.72 E-value=1.9e-07 Score=87.95 Aligned_cols=93 Identities=27% Similarity=0.364 Sum_probs=77.0
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC-----------------------C-------CccchHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------D-------YVPATIM 265 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~-----------------------~-------~~~~~~~ 265 (367)
.+|+.++.|+ +.++.+.++|.++.+.|+|.|-...+|++.- + ...+.++
T Consensus 106 ~iK~~~~~l~-MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~e 184 (283)
T cd04727 106 IDKHKFKVPF-VCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYE 184 (283)
T ss_pred HHHHHcCCcE-EccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHH
Confidence 6666677666 6789999999999999999998877666532 0 1235778
Q ss_pred HHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 266 ALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 266 ~l~~i~~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|.++.+.. ++||+ +.|||.+++++.+++.+||++|++|+.++.
T Consensus 185 lLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 185 LVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred HHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 899888866 79997 999999999999999999999999998864
No 96
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.64 E-value=3.7e-07 Score=86.06 Aligned_cols=93 Identities=27% Similarity=0.344 Sum_probs=77.2
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC---------------------C----------CccchH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------YVPATI 264 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~---------------------~----------~~~~~~ 264 (367)
.+|+.+++|+ +.++.+.++|.++.+.|+|.|-..+.||+.- . .-.+.+
T Consensus 108 ~~K~~f~vpf-mad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 186 (287)
T TIGR00343 108 IDKKKFKVPF-VCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPV 186 (287)
T ss_pred HHHHHcCCCE-EccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCH
Confidence 5667778887 6689999999999999999999887776531 0 012567
Q ss_pred HHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 265 MALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|.++++.. ++||+ +.|||.|++|+.+++.+|||+|.+|+.++.
T Consensus 187 elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 187 ELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred HHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 8888888765 79998 999999999999999999999999998864
No 97
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=4.6e-06 Score=74.82 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=72.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
...-+.+..+.+.|++..|.++|+|.|-..-+|.+. .....+.+++++++.+ . .++||+.|.+.|++++.+++.+
T Consensus 125 ~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~ 201 (229)
T COG3010 125 YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEI 201 (229)
T ss_pred cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHh
Confidence 455688999999999999999999998755445432 2234568888888876 3 7999999999999999999999
Q ss_pred CCCEEEechHHH
Q 017718 299 GASGIFIGRPVV 310 (367)
Q Consensus 299 GAd~V~ig~~~l 310 (367)
||++|.+|+++-
T Consensus 202 Ga~aVvVGsAIT 213 (229)
T COG3010 202 GADAVVVGSAIT 213 (229)
T ss_pred CCeEEEECcccC
Confidence 999999999763
No 98
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.59 E-value=2.1e-06 Score=80.09 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.|.+.+....... ....++.+.++.+.+ .+||++.|||++.+|+.+++.+||++|++|+.++.
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 46688999999999998653111111 235788899998877 79999999999999999998999999999998875
No 99
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.59 E-value=1.4e-06 Score=82.57 Aligned_cols=166 Identities=18% Similarity=0.197 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhh---hcCCCCccccccccccccCccccc--cchhhHHHhhhccCccc
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~ 212 (367)
..++++..++.|+.++-+..|....+.-..+++. ...+|- ..+++.-.. ...... .++... ++....-+.-
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPv--l~kdfi~~~-~qi~~a~~~GAD~V-lLi~~~l~~~ 147 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPV--LRKDFIIDP-YQIYEARAAGADAI-LLIVAALDDE 147 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCE--EeeeecCCH-HHHHHHHHcCCCEE-EEEeccCCHH
Confidence 3467788888999999888877665555544432 222331 112211000 000000 000000 0111000111
Q ss_pred cHH-HHH--hhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 213 SWK-WLQ--TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 213 ~~~-~l~--~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+ .++ +..++-+++ .+.+.++++++.++|+|.|.+.| +.+..-....+...++.+.+++..++|+.|||.++
T Consensus 148 ~l~~li~~a~~lGl~~lv-evh~~~E~~~A~~~gadiIgin~---rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ 223 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLV-EVHDEEELERALKLGAPLIGINN---RNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTP 223 (260)
T ss_pred HHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHHcCCCEEEECC---CCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCH
Confidence 222 111 223555443 56788899999999999888743 33333334466667777666545799999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+|+.+++.+|||+|.+|+.++.
T Consensus 224 ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 224 EDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred HHHHHHHHcCCCEEEECHHHcC
Confidence 9999999999999999998874
No 100
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.58 E-value=4.4e-06 Score=75.94 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=67.9
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC-CC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+|+.. +..|.+ .+.+.++++.+.+.|+|+|.++.-..+. .. ..+..++.++++.+.+ ++||++.||| +.+++
T Consensus 88 ~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~~~ 163 (201)
T PRK07695 88 SVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPENT 163 (201)
T ss_pred HHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHHHH
Confidence 455444 334544 4678899999999999999775322221 11 1223567778877665 7999999999 99999
Q ss_pred HHHHHcCCCEEEechHHHH
Q 017718 293 FKALALGASGIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~ 311 (367)
.+++.+||++|++++.+..
T Consensus 164 ~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 164 RDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHcCCCEEEEEHHHhc
Confidence 9999999999999998875
No 101
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.55 E-value=1.2e-05 Score=75.99 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
..+.+.++++.. +.||++.|||++++++.+++..|||+|.+|++++.-+
T Consensus 186 ~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 186 LNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred HHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 345666666654 6799999999999999999999999999999987654
No 102
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.52 E-value=1.6e-05 Score=74.62 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+++ .++..++-.. .+.+..+...+..-..+.++-.+|+.........+.+.++++... +.||+++|||++++++.
T Consensus 124 ~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~ 201 (244)
T PRK13125 124 IIKN-KGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDAR 201 (244)
T ss_pred HHHH-cCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHH
Confidence 4443 4555555443 346777887777655565553444322222334456777766543 57899999999999999
Q ss_pred HHHHcCCCEEEechHHHHHh
Q 017718 294 KALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~~l 313 (367)
+++..|||++.+||.++.-+
T Consensus 202 ~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 202 DALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHcCCCEEEECHHHHHHH
Confidence 99999999999999887543
No 103
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.52 E-value=1.5e-06 Score=82.23 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=75.8
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------------------CC------------CccchHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------------------LD------------YVPATIM 265 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------------------~~------------~~~~~~~ 265 (367)
.+|+.+++|+ +.++.+.++|.++.+.|+|.|-..+..|+. +. .-.+.++
T Consensus 115 ~~K~~f~~~f-mad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~e 193 (293)
T PRK04180 115 IDKWDFTVPF-VCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYE 193 (293)
T ss_pred HHHHHcCCCE-EccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHH
Confidence 6677778887 568899999999999999999887544431 00 0235678
Q ss_pred HHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 266 ALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 266 ~l~~i~~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|.++++.. ++||+ +.|||.|++|+.+++.+||++|++|+.++.
T Consensus 194 lL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 194 LVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 888888865 79998 999999999999999999999999998864
No 104
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.50 E-value=1e-05 Score=79.66 Aligned_cols=94 Identities=27% Similarity=0.324 Sum_probs=67.9
Q ss_pred HHHhhc--CCCEEEEecCC---------HH---HHHHHHHcCCcEEEEcCCCCC------C-CCC--cc-chHHHHHHHH
Q 017718 216 WLQTIT--KLPILVKGVLT---------AE---DARIAVQAGAAGIIVSNHGAR------Q-LDY--VP-ATIMALEEVV 271 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v~~---------~~---~a~~~~~~G~d~i~vs~~gg~------~-~~~--~~-~~~~~l~~i~ 271 (367)
.+|+.. +.||.+|+... .+ .++.+.++|+|.+.++..... . ... .+ ...+....++
T Consensus 208 aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik 287 (341)
T PF00724_consen 208 AIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIK 287 (341)
T ss_dssp HHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHH
T ss_pred HHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhh
Confidence 777776 57899999721 12 267889999999877532111 0 011 11 1234556666
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 272 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 272 ~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+.+ ++|||+.|||++++.+.++++.| ||+|.+||+++.
T Consensus 288 ~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 288 KAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 666 79999999999999999999987 999999999986
No 105
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.47 E-value=1e-05 Score=73.95 Aligned_cols=170 Identities=16% Similarity=0.184 Sum_probs=104.5
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (367)
+=+....+.+...++++.+.+.|++.+-+|.+.|..-..-+.++..+.-+-.+....+...+ .. +.......+++.
T Consensus 13 ~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~--~~-~~a~~aGA~fiv- 88 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE--QV-DRLADAGGRLIV- 88 (206)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH--HH-HHHHHcCCCEEE-
Confidence 33444677888888888888999999999988886433345555544211000000000000 00 000000001111
Q ss_pred ccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 207 QIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 207 ~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
-|.++-+ ..+...+.|+++ ++.+++++..+.+.|+|+|.+.- ......+.+.++++.++.++|+++.|
T Consensus 89 --sp~~~~~v~~~~~~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~ipvvaiG 158 (206)
T PRK09140 89 --TPNTDPEVIRRAVALGMVVMP-GVATPTEAFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDVPVFAVG 158 (206)
T ss_pred --CCCCCHHHHHHHHHCCCcEEc-ccCCHHHHHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCCeEEEEC
Confidence 1122222 333345667655 58999999999999999999842 11223566666666553369999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|| +.+++...+++||++|.+++.++.
T Consensus 159 GI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 159 GV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 99 889999999999999999998864
No 106
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.46 E-value=8e-06 Score=75.08 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=108.6
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc--ccccccccCccccccchhhHHH
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL--KNFQGLDLGKMDEANDSGLAAY 203 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (367)
.+-+....+.+....+++.+.+.|+..+-||+++|..-.-.+.++..+.-.+++.. ......+ .. +......+++
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~--~~-~~a~~aGA~F 91 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAV--TA-RLAILAGAQF 91 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHH--HH-HHHHHcCCCE
Confidence 45555577889999999999999999999999998754445566655421011111 0000000 00 0000011111
Q ss_pred hhhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 204 VAGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 204 ~~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+. .|.++-+ ......++|++- ++.++.++..+.++|+|+|-+.- ......+.++.++..++ .+|++
T Consensus 92 iv---sP~~~~~v~~~~~~~~i~~iP-G~~T~~E~~~A~~~Gad~vklFP-------a~~~G~~~ik~l~~~~p-~ip~~ 159 (213)
T PRK06552 92 IV---SPSFNRETAKICNLYQIPYLP-GCMTVTEIVTALEAGSEIVKLFP-------GSTLGPSFIKAIKGPLP-QVNVM 159 (213)
T ss_pred EE---CCCCCHHHHHHHHHcCCCEEC-CcCCHHHHHHHHHcCCCEEEECC-------cccCCHHHHHHHhhhCC-CCEEE
Confidence 11 1222222 223345888855 88999999999999999999842 11112445666655553 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|||. .+++.+++++||++|.+|+.++-
T Consensus 160 atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 160 VTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred EECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 999997 69999999999999999998853
No 107
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.45 E-value=9e-07 Score=82.87 Aligned_cols=77 Identities=25% Similarity=0.284 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc---CCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l---GAd~V~ig~~~ 309 (367)
.+.++.+.+.|++.+++.+...-+...|+ .++.+.++.+.+ ++|||++|||++.+|+.+++.+ |||+|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 35688899999999999653322333454 899999998876 7999999999999999998754 99999999999
Q ss_pred HHH
Q 017718 310 VYS 312 (367)
Q Consensus 310 l~~ 312 (367)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 863
No 108
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.42 E-value=1.5e-06 Score=81.23 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|+|+|++++-..... .....++.+.++.+.+ ++|||++|||++.+|+.+++.. |||+|++||++..
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~-~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGT-KKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC-CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 4667889999999999965211001 1123678888887766 8999999999999999999997 9999999999986
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 229 ~ 229 (243)
T cd04731 229 G 229 (243)
T ss_pred C
Confidence 3
No 109
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.42 E-value=8.6e-07 Score=83.84 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-HcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal-~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.+++.+-..-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 3667889999999999964322122344 4888999998876 79999999999999999999 799999999999998
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
.
T Consensus 232 ~ 232 (258)
T PRK01033 232 K 232 (258)
T ss_pred C
Confidence 3
No 110
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.40 E-value=1.3e-06 Score=80.94 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
...++..|+++.++|++.|-.-+. -|+. .|....+.|..+++.. ++|||++|||.+++|+.+++.+|||+|++|+
T Consensus 130 c~dd~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 130 CTDDPVLAKRLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 347899999999999999955211 1111 2556688888887764 7999999999999999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
++..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 8863
No 111
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.40 E-value=3.1e-06 Score=79.75 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.++++++.......+ ..++.+.++.+.. ++|||++|||++.+|+.+++.. ||++|++|+++.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3567889999999999976432111123 3688888888776 7999999999999999999974 9999999999876
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 3
No 112
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.39 E-value=5.9e-05 Score=71.51 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 266 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 266 ~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
.+..+++.. +.||...+||++++++.++...|||+|.+|++++.-+
T Consensus 193 ~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 193 LIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred HHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 344444433 7999999999999999999999999999999997644
No 113
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.36 E-value=1.8e-06 Score=80.05 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=63.0
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
...++..++++.++|++.|-.-+. -|+. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++
T Consensus 130 c~~d~~~ak~l~~~G~~~vmPlg~pIGsg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 130 CTDDPVLAKRLEEAGCAAVMPLGAPIGSG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 347899999999999999955211 1111 2455677788887764 7999999999999999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
++..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 8863
No 114
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.35 E-value=8.5e-06 Score=73.50 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=99.2
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (367)
+-++...+.+...++++.+.+.|++.+.++...+..-.--+.++..+ |. .+...++... ..... .......++.
T Consensus 7 ~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~--~~~~iGag~v~~~--~~~~~-a~~~Ga~~i~ 81 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEF--PEALIGAGTVLTP--EQADA-AIAAGAQFIV 81 (190)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCEEEEEeCCCH--HHHHH-HHHcCCCEEE
Confidence 44455667777788888888889999888887664211113333333 21 0000000000 00000 0000000110
Q ss_pred hccCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 206 GQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 206 ~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
. +..+.+....++..+.|+++ ++.+.+++..+.++|+|+|-+.. ..+...+.+..+.+..+ .+|+++.||
T Consensus 82 ~-p~~~~~~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p-------~~~~g~~~~~~l~~~~~-~~p~~a~GG 151 (190)
T cd00452 82 S-PGLDPEVVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFP-------AEAVGPAYIKALKGPFP-QVRFMPTGG 151 (190)
T ss_pred c-CCCCHHHHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcC-------CcccCHHHHHHHHhhCC-CCeEEEeCC
Confidence 0 00011222334446778766 77899999999999999999843 11223455666654442 589999999
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
| +.+++.+++.+||++|.+++.+.
T Consensus 152 I-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 152 V-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred C-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9 99999999999999999999875
No 115
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.35 E-value=2.4e-06 Score=79.21 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.+-++.+.+.|++.+++.+....+...+ +.++.+.++.+.+ ++||+++|||++.+|+.+++..||++|++||.++.+
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 3557889999999999964321122233 6788999998876 799999999999999999999999999999998763
No 116
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.32 E-value=2.4e-06 Score=79.16 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.|.+.+...-+...| +.++.+.++.+.+ .+|||++|||++.+|+.+++..| |++|++||++++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4667888999999888853221112234 5789999998876 69999999999999999999998 999999999986
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
No 117
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=5.3e-06 Score=81.47 Aligned_cols=202 Identities=20% Similarity=0.250 Sum_probs=132.7
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCC--CCHHHHH---------------------hhCC--
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVA---------------------STGP-- 122 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~--~~~e~i~---------------------~~~~-- 122 (367)
..+.+-+++|||- . -|+++++-.|-+.|..++.+..-. ..++-+. ...|
T Consensus 7 l~y~nk~iLApMv--r----~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMV--R----AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHH--H----hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 4467789999993 2 257899999999999998765411 1111110 0011
Q ss_pred -CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017718 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 123 -~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
....||+- ..+.+...+..+.. ......+++|++||-. |+.-.++ +
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~lv-~nDvsgidiN~gCpK~----------fSi~~gm---------------------g 127 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKLV-DNDVSGIDINMGCPKE----------FSIHGGM---------------------G 127 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHHh-hcccccccccCCCCCc----------cccccCC---------------------C
Confidence 34667875 45666654444333 3457778999999852 2110011 1
Q ss_pred HHhhhccCccccH-HHHHhhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHH
Q 017718 202 AYVAGQIDRSLSW-KWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVK 272 (367)
Q Consensus 202 ~~~~~~~d~~~~~-~~l~~~~~~Pv~vK~v~------~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~ 272 (367)
..+..++|.-..+ ..+.+...+|+..|+.. +.+..++....|+.+|.| |+.+. -..-+.+.+.+.++++
T Consensus 128 aalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~v--h~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 128 AALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITV--HCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred chhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEE--EeeccccCCCCCCCHHHHHHHHH
Confidence 1112222222232 36667779999999972 345588899999999999 55432 2235678889999998
Q ss_pred HhcCCCcEEEecCCCC---HHHHHHHHH-cCCCEEEechHHHH
Q 017718 273 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFIGRPVVY 311 (367)
Q Consensus 273 ~~~~~~~via~GGI~~---~~dv~kal~-lGAd~V~ig~~~l~ 311 (367)
.++ .+|||++||..+ +.|+.+... .|++.||+.|...+
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 884 399999999999 899998887 69999999996654
No 118
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.31 E-value=2.9e-06 Score=78.59 Aligned_cols=77 Identities=26% Similarity=0.354 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.+.++.+.+.|++.+++.+-..-+...+ ..++.+.++.+.+ ++||++.|||++.+|+.+++.+|||+|++||.++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 4567889999999998753211111223 4688888888775 799999999999999999999999999999999864
No 119
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.30 E-value=3.2e-06 Score=78.48 Aligned_cols=76 Identities=28% Similarity=0.270 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH-HHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k-al~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.++|+|.|++++....+...+ ..++.+.++++.+ .+||+++|||++.+|+.+ ....|||+|++|++|-|
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h~ 232 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhhC
Confidence 4678999999999999976322111223 3688888888876 799999999999999999 55589999999998853
No 120
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.29 E-value=5.1e-05 Score=71.79 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=62.0
Q ss_pred cCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCC-C--CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 221 TKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH-G--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~-g--g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.++..+.=.. .+.+.++...+..-++|.+-.. | |..-.......+.+.++++.. ++||++.+||++++|+.++
T Consensus 141 ~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~ 218 (258)
T PRK13111 141 HGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAI 218 (258)
T ss_pred cCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHH
Confidence 4554443222 3356677777777777765222 2 221112223445778887755 7999999999999999999
Q ss_pred HHcCCCEEEechHHHHHhh
Q 017718 296 LALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 296 l~lGAd~V~ig~~~l~~l~ 314 (367)
+.. ||+|.+|++++..+.
T Consensus 219 ~~~-ADGviVGSaiv~~~~ 236 (258)
T PRK13111 219 AAV-ADGVIVGSALVKIIE 236 (258)
T ss_pred HHh-CCEEEEcHHHHHHHH
Confidence 975 999999999987654
No 121
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.29 E-value=2.9e-06 Score=91.53 Aligned_cols=134 Identities=28% Similarity=0.283 Sum_probs=98.3
Q ss_pred HHhhc-CCCEEEEecCCHH---HHHHHHHcCCcEEEEcCC-CCCCCC------CccchHHH-HHHHHH-----HhcCCCc
Q 017718 217 LQTIT-KLPILVKGVLTAE---DARIAVQAGAAGIIVSNH-GARQLD------YVPATIMA-LEEVVK-----ATQGRIP 279 (367)
Q Consensus 217 l~~~~-~~Pv~vK~v~~~~---~a~~~~~~G~d~i~vs~~-gg~~~~------~~~~~~~~-l~~i~~-----~~~~~~~ 279 (367)
++... .-.|.||.+...- .|.-.+++.||.|.||+| ||+... ..--+|++ |.|..+ .+++++-
T Consensus 1092 Lk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv~NdLR~rvV 1171 (2142)
T KOG0399|consen 1092 LKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLVLNDLRGRVV 1171 (2142)
T ss_pred hhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHhhccccccEE
Confidence 44433 3568999984321 244566788999999999 555321 11123332 334333 2456788
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc--------------------------C-hHHHHHHHHHHHHHH
Q 017718 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--------------------------G-EKGVRRVLEMLREEF 332 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~--------------------------G-~~~v~~~i~~l~~el 332 (367)
+-.||++++|.||+-|-.+||+-..+++.-|.+++|- | ++.|.+++-.+.+|+
T Consensus 1172 lqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEv 1251 (2142)
T KOG0399|consen 1172 LQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEV 1251 (2142)
T ss_pred EEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999777776541 3 467889999999999
Q ss_pred HHHHHHhCCCChhhhccc
Q 017718 333 ELAMALSGCRSLKEITRD 350 (367)
Q Consensus 333 ~~~m~~~G~~si~~l~~~ 350 (367)
+.+|..+|++++.|+-+.
T Consensus 1252 R~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1252 RGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHhCcchHHHHhcc
Confidence 999999999999999643
No 122
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.25 E-value=2e-05 Score=72.88 Aligned_cols=87 Identities=24% Similarity=0.263 Sum_probs=64.9
Q ss_pred HHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++.. .|+.+|.+ ++.++ ++.+.++|+|+|..|. | +..+..+.+.+..+++..+++++|.++|||
T Consensus 114 ~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsT-G---~~~~gat~~~v~~m~~~~~~~~~IKasGGI 188 (221)
T PRK00507 114 AVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTST-G---FSTGGATVEDVKLMRETVGPRVGVKASGGI 188 (221)
T ss_pred HHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCC-C---CCCCCCCHHHHHHHHHHhCCCceEEeeCCc
Confidence 444433 47889985 33333 5678999999776643 3 223336677777777777778999999999
Q ss_pred CCHHHHHHHHHcCCCEEEech
Q 017718 287 RRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~ 307 (367)
++.+|+.+.+.+||+.++..+
T Consensus 189 rt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 189 RTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CCHHHHHHHHHcCcceEccCc
Confidence 999999999999999987655
No 123
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.22 E-value=7.6e-06 Score=77.20 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
.+.++.+.++|+|.|++++-.. ......+.++.+.++++.+ ++|||++|||++.+|+.+++..| ||+|++|+.+..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 4567899999999999965211 1112335678888888876 79999999999999999999988 999999998865
No 124
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.17 E-value=1.6e-05 Score=74.25 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+-++.+.++|++.|.+.+-.+ .....+..++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3668899999999998866332 1123455788888988877 79999999999999999999999999999998764
No 125
>PLN02591 tryptophan synthase
Probab=98.12 E-value=0.00038 Score=65.50 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=61.6
Q ss_pred hcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCC-CCCCCc-cc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 220 ITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGA-RQLDYV-PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 220 ~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg-~~~~~~-~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
..++..+.=.. .+.+-.+...+..-.+|.+-..-| +....+ +. ..+.+.++++.. ++||+.--||++++|+.+
T Consensus 129 ~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~ 206 (250)
T PLN02591 129 KNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQ 206 (250)
T ss_pred HcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHH
Confidence 34665555333 334556666666666777633222 211122 22 334577776643 899999889999999999
Q ss_pred HHHcCCCEEEechHHHHHh
Q 017718 295 ALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~~l 313 (367)
++..|||+|.+|++++.-.
T Consensus 207 ~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 207 IAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred HHhcCCCEEEECHHHHHhh
Confidence 9999999999999998654
No 126
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.09 E-value=1.9e-05 Score=74.37 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+-|+.+.+.|++.|.+.+-.+. .......++.++++.+.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~-~~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITAS-SEGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-cccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 36688899999999999764331 123467888999998877 79999999999999999999999999999998764
No 127
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.09 E-value=2e-05 Score=74.30 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=63.9
Q ss_pred CH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 232 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 232 ~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
++ +.|+.+.+.|++.+.+.+.-+. .......++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|++||.++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 6688999999999999764321 124456788899998877 7999999999999999999999999999999876
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 4
No 128
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.08 E-value=7.4e-05 Score=67.33 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=66.0
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.+++..+++.++. +.+++++..+.+.|+|+|-+.-. ....-.+.+.+++..++ ++|+++.||| +.+++...
T Consensus 99 ~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~~-~ipvvaiGGI-~~~n~~~~ 169 (187)
T PRK07455 99 EAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPLG-HIPLIPTGGV-TLENAQAF 169 (187)
T ss_pred HHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhCC-CCcEEEeCCC-CHHHHHHH
Confidence 4445556777664 89999999999999999998321 01223556666666552 6999999999 77999999
Q ss_pred HHcCCCEEEechHHH
Q 017718 296 LALGASGIFIGRPVV 310 (367)
Q Consensus 296 l~lGAd~V~ig~~~l 310 (367)
++.||++|.+++.++
T Consensus 170 l~aGa~~vav~s~i~ 184 (187)
T PRK07455 170 IQAGAIAVGLSGQLF 184 (187)
T ss_pred HHCCCeEEEEehhcc
Confidence 999999999999764
No 129
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.07 E-value=7.3e-05 Score=70.42 Aligned_cols=164 Identities=24% Similarity=0.324 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhh---hcCCCCccccccccccccCccccccchhhHHH---hhhccCccc
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY---VAGQIDRSL 212 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~ 212 (367)
.++++.-++.|+.+|-|..|....+....|++. ...+|- -.+.+- ++...+.+....+ ++. +....++.
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv--L~KDFI-id~~QI~eA~~~G-ADaVLLI~~~L~~~- 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV--LRKDFI-IDPYQIYEARAAG-ADAVLLIAAILSDD- 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E--EEES----SHHHHHHHHHTT--SEEEEEGGGSGHH-
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc--ccccCC-CCHHHHHHHHHcC-CCEeehhHHhCCHH-
Confidence 345666778999999999998887766666653 233331 111110 0000000000000 000 00000110
Q ss_pred cHH---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 213 SWK---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 213 ~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
... ......++-++| .+-+.++++++.++|++.|-|.|.- +.+-....+...++...++.++.+|+.+||.+.
T Consensus 146 ~l~~l~~~a~~lGle~lV-EVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~ 221 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALV-EVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTP 221 (254)
T ss_dssp HHHHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSH
T ss_pred HHHHHHHHHHHcCCCeEE-EECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCH
Confidence 111 222334665554 5678899999999999988886633 333333344444555556667899999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+|+.++..+|+|+|.||+.+|.
T Consensus 222 ~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 222 EDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp HHHHHHCTTT-SEEEESHHHHT
T ss_pred HHHHHHHHCCCCEEEECHHHhC
Confidence 9999999999999999999986
No 130
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.06 E-value=5.6e-05 Score=69.12 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCC
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 341 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~ 341 (367)
.++.++.+++.+ ++|||++||..+.+|..+++..| ||++..++-|.|. + .-..|++..|...|.
T Consensus 187 Dl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 187 DLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred CHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 556777777777 89999999999999999999988 9999999888774 2 234566777777665
No 131
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.05 E-value=3.3e-05 Score=70.96 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=60.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-|+.=...++-.|++++++|+..|.--+.. |+ ..|..+...|..+++.. ++|||.|+||.++.|+.+++.+||
T Consensus 123 GF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~ 198 (247)
T PF05690_consen 123 GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGA 198 (247)
T ss_dssp T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-
T ss_pred CCEEeecCCCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 44555555578889999999999998874421 11 12455677888888877 899999999999999999999999
Q ss_pred CEEEechHHH
Q 017718 301 SGIFIGRPVV 310 (367)
Q Consensus 301 d~V~ig~~~l 310 (367)
|+|.+-+++.
T Consensus 199 daVLvNTAiA 208 (247)
T PF05690_consen 199 DAVLVNTAIA 208 (247)
T ss_dssp SEEEESHHHH
T ss_pred ceeehhhHHh
Confidence 9999999774
No 132
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.04 E-value=9.9e-05 Score=67.13 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCC--CCCCCC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNH--GARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+.+++..+.+.|+|+|.++.- +++... ..+..++.+.++++.. .++||++.||| +.+++.+++.+||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 35788899999999999998531 111111 1122377888887766 24999999999 7899999999999999999
Q ss_pred hHHH
Q 017718 307 RPVV 310 (367)
Q Consensus 307 ~~~l 310 (367)
+.+.
T Consensus 189 s~i~ 192 (212)
T PRK00043 189 SAIT 192 (212)
T ss_pred HHhh
Confidence 9865
No 133
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.03 E-value=0.00023 Score=66.71 Aligned_cols=164 Identities=23% Similarity=0.267 Sum_probs=94.2
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhh---cCCCCccccccccccccCcccccc--chhhHHHhhhccCccccH
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNR---FTLPPFLTLKNFQGLDLGKMDEAN--DSGLAAYVAGQIDRSLSW 214 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~ 214 (367)
++++..++.|+.+|-|..|....+....+++.- ..+|- -.+.+- +....+.+.. ++...-.+....++. ..
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~Pv--L~KDFI-id~~QI~ea~~~GADavLLI~~~L~~~-~l 140 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPV--LRKDFI-LDEIQIREARAFGASAILLIVRILTPS-QI 140 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCE--Eecccc-CCHHHHHHHHHcCCCEEEeEHhhCCHH-HH
Confidence 566778889999998888877766666555432 22231 111110 0000000000 000000000000110 11
Q ss_pred H---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 215 K---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 215 ~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+ ......++-++| .+-+.++++++.++|++.|-|-|..-.++ ....+...++...++..+.+|+.|||.+++|
T Consensus 141 ~~l~~~a~~lGle~LV-EVh~~~El~~a~~~ga~iiGINnRdL~t~---~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d 216 (247)
T PRK13957 141 KSFLKHASSLGMDVLV-EVHTEDEAKLALDCGAEIIGINTRDLDTF---QIHQNLVEEVAAFLPPNIVKVGESGIESRSD 216 (247)
T ss_pred HHHHHHHHHcCCceEE-EECCHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 1 222334665555 56788889999999999887866432222 2233344455566666788999999999999
Q ss_pred HHHHHHcCCCEEEechHHHHH
Q 017718 292 VFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~~ 312 (367)
+.+...+ ||+|.||+.+|.+
T Consensus 217 ~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 217 LDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHHHHh-CCEEEECHHHhCC
Confidence 9997776 9999999999863
No 134
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.00 E-value=3.5e-05 Score=76.32 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=61.6
Q ss_pred CEEEEecCC----HHHHHHHHHcCCcEEEEcCCCCCCCC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 224 PILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 224 Pv~vK~v~~----~~~a~~~~~~G~d~i~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
.|.+|...+ .+.++.++++|+|.|++++.--.|.+ ++...+..|.++.+.+ ++|||+ |+|.+.+|+.+++.+
T Consensus 132 ~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~-G~V~t~e~A~~~~~a 208 (369)
T TIGR01304 132 GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIA-GGVNDYTTALHLMRT 208 (369)
T ss_pred ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHHc
Confidence 388888754 36689999999999999543211222 2233456677777766 799998 999999999999999
Q ss_pred CCCEEEech
Q 017718 299 GASGIFIGR 307 (367)
Q Consensus 299 GAd~V~ig~ 307 (367)
|||+|++|+
T Consensus 209 GaDgV~~G~ 217 (369)
T TIGR01304 209 GAAGVIVGP 217 (369)
T ss_pred CCCEEEECC
Confidence 999999886
No 135
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.98 E-value=0.00013 Score=66.64 Aligned_cols=167 Identities=15% Similarity=0.142 Sum_probs=106.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc--ccccccccCccccccchhhHHH
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL--KNFQGLDLGKMDEANDSGLAAY 203 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (367)
.+-+....+.+...++++.+.+.|++.+-||+++|..-.--+.++..+ |. +.. .+....+ ..+......+++
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~-~~vGAGTVl~~~---~a~~a~~aGA~F 83 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PD-ALIGAGTVLNPE---QLRQAVDAGAQF 83 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CC-CEEEEEeCCCHH---HHHHHHHcCCCE
Confidence 445555778898889999999999999999999987434344555444 31 111 1100000 000000001111
Q ss_pred hhhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 204 VAGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 204 ~~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+. .|.++-+ ...+..++|++- +++++.++..+.++|+|.|.+.-.+ .-+|+..+..| +.-+ .+++++
T Consensus 84 iv---sP~~~~~v~~~~~~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~yikal---~~pl-p~i~~~ 152 (204)
T TIGR01182 84 IV---SPGLTPELAKHAQDHGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGGVKMLKAL---AGPF-PQVRFC 152 (204)
T ss_pred EE---CCCCCHHHHHHHHHcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCCHHHHHHH---hccC-CCCcEE
Confidence 11 2223222 223346888866 8999999999999999999996421 11234444443 3333 379999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
..|||.- +++...|.+||.+|++|+.+.
T Consensus 153 ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 153 PTGGINL-ANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred ecCCCCH-HHHHHHHhCCCEEEEEChhhc
Confidence 9999976 899999999999999999775
No 136
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00024 Score=66.57 Aligned_cols=164 Identities=20% Similarity=0.269 Sum_probs=98.4
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhHHhh---hhcCCCCccccccccccccCccccc--cchhhHHHhhhccCcc-c-c
Q 017718 141 LVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVAGQIDRS-L-S 213 (367)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~-~-~ 213 (367)
+++.-++.|+.+|-|..|.+...-..++++ ....+|- -.+.+- +....+... .++...-.+....+.. + .
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~Pv--L~KDFi-iD~yQI~~Ar~~GADavLLI~~~L~~~~l~e 147 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPV--LRKDFI-IDPYQIYEARAAGADAVLLIVAALDDEQLEE 147 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCe--eeccCC-CCHHHHHHHHHcCcccHHHHHHhcCHHHHHH
Confidence 566667789999999999888655555553 3344441 111110 000000000 0110000111111111 1 1
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 214 WKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
+.......++-++| .+.+.++++++.++|++-|-+-|..=+++.. ..+...++....+.++.+|+.+||.+++|+.
T Consensus 148 l~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf~v---dl~~t~~la~~~p~~~~~IsESGI~~~~dv~ 223 (254)
T COG0134 148 LVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTLEV---DLETTEKLAPLIPKDVILISESGISTPEDVR 223 (254)
T ss_pred HHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchhee---cHHHHHHHHhhCCCCcEEEecCCCCCHHHHH
Confidence 11222334666655 5788999999999999998887744333333 3333455555666678899999999999999
Q ss_pred HHHHcCCCEEEechHHHH
Q 017718 294 KALALGASGIFIGRPVVY 311 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~ 311 (367)
+....|||++.||+.+|.
T Consensus 224 ~l~~~ga~a~LVG~slM~ 241 (254)
T COG0134 224 RLAKAGADAFLVGEALMR 241 (254)
T ss_pred HHHHcCCCEEEecHHHhc
Confidence 999999999999999986
No 137
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.98 E-value=0.0008 Score=63.06 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHcCCcEEEE-cCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIV-SNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~v-s~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+..+.+.+...+.|.+ +-.|++. ....+...+.+.++++.. ++||+++|||++.+++.++... ||++.+|+
T Consensus 140 T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 140 TPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 4567777777756666665 3234332 212344557777777654 8999999999999999999999 99999999
Q ss_pred HHHHHh
Q 017718 308 PVVYSL 313 (367)
Q Consensus 308 ~~l~~l 313 (367)
.++.-+
T Consensus 217 aiv~~~ 222 (242)
T cd04724 217 ALVKII 222 (242)
T ss_pred HHHHHH
Confidence 887654
No 138
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.92 E-value=0.00034 Score=63.54 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHcCCcee-ec-CC----CCCCHHHHHhhCCC-ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 89 GEYATARAASAAGTIMT-LS-SW----STSSVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~-vs-~~----~~~~~e~i~~~~~~-~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
.-..+++++ +.|+..+ ++ ++ ....++++++..++ ....-+... |++. ..++.+.++|++.+.++.-++.
T Consensus 13 ~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad~i~vh~~~~~ 88 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGADIVTVLGVADD 88 (206)
T ss_pred HHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCCEEEEeccCCH
Confidence 345677777 6676644 33 12 11234556555442 233333222 4442 2467788999999887654321
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec--C-CHHHHHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV--L-TAEDARI 238 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v--~-~~~~a~~ 238 (367)
. + ..+ ..++.++ .++++++-.. . ..+.++.
T Consensus 89 ~--------------------~----------------~~~----------~i~~~~~-~g~~~~~~~~~~~t~~~~~~~ 121 (206)
T TIGR03128 89 A--------------------T----------------IKG----------AVKAAKK-HGKEVQVDLINVKDKVKRAKE 121 (206)
T ss_pred H--------------------H----------------HHH----------HHHHHHH-cCCEEEEEecCCCChHHHHHH
Confidence 0 0 000 1123443 5888887643 2 2478888
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+.|+|.|.+. +|......++...+.+.++++.++ .+++.++||| +.+++.+++..|||.+.+||.++
T Consensus 122 ~~~~g~d~v~~~-pg~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 122 LKELGADYIGVH-TGLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred HHHcCCCEEEEc-CCcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 999999999884 222112233445666777776653 4677779999 88899999999999999999865
No 139
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.91 E-value=0.00015 Score=64.67 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHcCCcEEEEcCC--CCC-CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIVSNH--GAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~--gg~-~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+++..+.+.|+|+|.++.. +.. +....+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 5778899999999999998642 111 1111345677788877654 79999999995 7999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 8753
No 140
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.90 E-value=0.00011 Score=69.98 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=65.9
Q ss_pred HHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHH
Q 017718 216 WLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~d 291 (367)
.+|+..+ ...+.-.+.+.|+++.+.++|+|.|.+.| .+.+.|.++++..+ .++.+.++||| +.+.
T Consensus 174 ~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~n 242 (273)
T PRK05848 174 HARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYPHVLLEASGNI-TLEN 242 (273)
T ss_pred HHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCCCeEEEEECCC-CHHH
Confidence 6666554 23344477899999999999999998876 25555666665433 26779999999 9999
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.++..+|+|.+.+|+++.
T Consensus 243 i~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 243 INAYAKSGVDAISSGSLIH 261 (273)
T ss_pred HHHHHHcCCCEEEeChhhc
Confidence 9999999999999999765
No 141
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.88 E-value=8.3e-05 Score=68.85 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+.+.+.|+|.+.+..-.+. ..+....++.+.++.+.+ .+||++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 46788899999999999753221 123455788888888877 79999999999999999999999999999997753
No 142
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.87 E-value=0.0013 Score=58.53 Aligned_cols=170 Identities=23% Similarity=0.140 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC---CceEEEEeecCC----HHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~---~~~~~QLy~~~d----~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
.-..+.+.+.+.|+..++-.. ..++.+.+..+ -+.++++.. .. .+...+.+++++++|++++.+... .
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~-~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~--~ 88 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGF-PTGLTTTEVKVAEVEEAIDLGADEIDVVIN--I 88 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEEEEecc--H
Confidence 345788888888887654322 22333333322 345566542 23 466777889999999999987442 1
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHHHHhh--cCCCEEEEecC----CHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKWLQTI--TKLPILVKGVL----TAE 234 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~l~~~--~~~Pv~vK~v~----~~~ 234 (367)
. .+ |.. + . +.-. .++.+.+. .++|++++... +.+
T Consensus 89 ~-~~----------~~~----~-----------------~-------~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~ 129 (201)
T cd00945 89 G-SL----------KEG----D-----------------W-------EEVLEEIAAVVEAADGGLPLKVILETRGLKTAD 129 (201)
T ss_pred H-HH----------hCC----C-----------------H-------HHHHHHHHHHHHHhcCCceEEEEEECCCCCCHH
Confidence 0 00 000 0 0 0001 12355555 48999999872 444
Q ss_pred H----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 235 D----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 235 ~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
. ++.+.+.|+++|..+. |.. .+...++.+.++++..+.++++++.||+.+.+++..++.+||+++.+|
T Consensus 130 ~~~~~~~~~~~~g~~~iK~~~-~~~---~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 130 EIAKAARIAAEAGADFIKTST-GFG---GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHHHhCCCEEEeCC-CCC---CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 4 3345789999999864 211 122355666777666544689999999999999999999999999875
No 143
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.87 E-value=0.0035 Score=57.61 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CCHH----HHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecC
Q 017718 89 GEYATARAASAAGTIMTLSSWST------SSVE----EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~------~~~e----~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd 158 (367)
.|+.-.+.+.+.|..-.++|..+ .+.+ ++.+..+++..+|++ ..|.+.+.+..++..+..- .++|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~~-~i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLAP-NIVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhCC-CeEEEe-
Confidence 56777888888888777776532 2233 344444567889997 5565555444444444432 233321
Q ss_pred CCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHHH
Q 017718 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARI 238 (367)
Q Consensus 159 ~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~ 238 (367)
|+ +.. +. . ..+.|++ -++++.+-.+.+.+.|..
T Consensus 85 -P~------------------T~~----------------Gl-~----------A~~~L~~-~Gi~v~~T~vfs~~Qa~~ 117 (213)
T TIGR00875 85 -PM------------------TSE----------------GL-K----------AVKILKK-EGIKTNVTLVFSAAQALL 117 (213)
T ss_pred -CC------------------CHH----------------HH-H----------HHHHHHH-CCCceeEEEecCHHHHHH
Confidence 11 000 00 0 1113333 488999999999999999
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
+.++|+++|.. .=||--+.+....+.+.++.+.+ +.+..|++.+ +++..++.+++.+|||.|-+.-.++..+..
T Consensus 118 Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~~ 194 (213)
T TIGR00875 118 AAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRHPRHVLEAALIGADIATMPLDVMQQLFN 194 (213)
T ss_pred HHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCCHHHHHHHHHcCCCEEEcCHHHHHHHHc
Confidence 99999998876 33443344455566666666554 2367776655 999999999999999999999988887653
No 144
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.86 E-value=0.00049 Score=63.56 Aligned_cols=169 Identities=13% Similarity=0.148 Sum_probs=105.3
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcC--CCCcccc--ccccccccCccccccchhhH
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPPFLTL--KNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~--~p~~~~~--~~~~~~~~~~~~~~~~~~~~ 201 (367)
.+=++...+.+...++++.+.+.|++.+-||+++|..-...+.++..+. .|. +.. ......+ ..+......+
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~-~~vGaGTVl~~e---~a~~a~~aGA 92 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPG-MILGVGSIVDAA---TAALYIQLGA 92 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCC-eEEeeEeCcCHH---HHHHHHHcCC
Confidence 4445557889999999999999999999999999885444455543331 121 111 0000000 0000000011
Q ss_pred HHhhhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCc
Q 017718 202 AYVAGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 279 (367)
Q Consensus 202 ~~~~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~ 279 (367)
+++. .|.++-+ ......++|++ =+++++.++..+.++|++.|-+.-.+ ..|+. .++.+..-++ .++
T Consensus 93 ~FiV---sP~~~~~v~~~~~~~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~~---~ikal~~p~p-~i~ 160 (222)
T PRK07114 93 NFIV---TPLFNPDIAKVCNRRKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGPG---FVKAIKGPMP-WTK 160 (222)
T ss_pred CEEE---CCCCCHHHHHHHHHcCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCHH---HHHHHhccCC-CCe
Confidence 1111 1222222 22234578885 48899999999999999999996311 12333 3333333332 789
Q ss_pred EEEecCCCC-HHHHHHHHHcCCCEEEechHHH
Q 017718 280 VFLDGGVRR-GTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 280 via~GGI~~-~~dv~kal~lGAd~V~ig~~~l 310 (367)
++..|||.- .+++..++.+||.+|++|+.+.
T Consensus 161 ~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 161 IMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred EEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 999999985 5899999999999999999664
No 145
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.85 E-value=0.00018 Score=66.58 Aligned_cols=76 Identities=28% Similarity=0.351 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|+|.+.+..--|. ..+....++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++-
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 35588889999999999753221 223456788898888876 79999999999999999999999999999998764
No 146
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.84 E-value=8.2e-05 Score=69.15 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-|+.=...++-.|++++++|+..|.--+.. |+ .-|..+...|..|++.. ++||+.++||.+++|+.+++.+||
T Consensus 137 GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGa 212 (267)
T CHL00162 137 GFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGA 212 (267)
T ss_pred CCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCC
Confidence 44455445577888999999999998764321 11 12455667777777654 799999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.+.+.+..
T Consensus 213 DgVL~nSaIak 223 (267)
T CHL00162 213 SGVLLNTAVAQ 223 (267)
T ss_pred CEEeecceeec
Confidence 99999998864
No 147
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.83 E-value=0.00048 Score=73.41 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhh---hcCCCCccccccccccccCcccccc--chhhHHHhhhccCccccH
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEAN--DSGLAAYVAGQIDRSLSW 214 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~ 214 (367)
++++.-++.|+.+|-|..|-...+--..+++. ...+|- -.+.+. ++...+.+.. ++...-.+....++. .+
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~Pv--LrKDFI-id~~QI~ea~~~GADavLLI~~~L~~~-~l 149 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPV--LRKDFI-VTDYQIWEARAHGADLVLLIVAALDDA-QL 149 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCE--Eecccc-CCHHHHHHHHHcCCCEeehhHhhcCHH-HH
Confidence 45666778999999998887776655555543 333331 111110 0000000000 000000000111110 12
Q ss_pred H---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 215 K---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 215 ~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+ ......++-++| .+-+.++++++.++|++.|-|-|.- +.+-....+...++...++.++.+|+.+||.+++|
T Consensus 150 ~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRd---L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d 225 (695)
T PRK13802 150 KHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARN---LKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVE 225 (695)
T ss_pred HHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCC---CccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 2 222334666655 5788999999999999988886633 33322334444455556666788999999999999
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
+.++..+|||+|.||+.+|.
T Consensus 226 ~~~l~~~G~davLIGeslm~ 245 (695)
T PRK13802 226 VEDYARAGADAVLVGEGVAT 245 (695)
T ss_pred HHHHHHCCCCEEEECHHhhC
Confidence 99999999999999998865
No 148
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.82 E-value=0.00027 Score=64.86 Aligned_cols=67 Identities=28% Similarity=0.319 Sum_probs=51.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.++|+|+|-.|. | +..+..+.+.+..+++.++++++|-++|||++.+|+++++.+||+-++..
T Consensus 138 ~~ia~eaGADfvKTsT-G---f~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 138 CEICIDAGADFVKTST-G---FGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHHHHHhCCCEEEeCC-C---CCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 6778999999999863 2 11223455555555566666899999999999999999999999987543
No 149
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.82 E-value=0.00094 Score=63.45 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=65.4
Q ss_pred cHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.++.+|+..+ ...+--.+-+.++++.+.++|+|+|-+.| -..+.++++.+.++.++|+.++||| +.++
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~----------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDN----------MKPEEIKEAVQLLKGRVLLEASGGI-TLDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhcCCCcEEEECCC-CHHH
Confidence 3457777664 23334456789999999999999999865 2225566666655446999999999 6899
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
+......|+|.+.+|..+
T Consensus 236 i~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 236 LEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHcCCCEEEeCHHH
Confidence 999999999999997644
No 150
>PLN02411 12-oxophytodienoate reductase
Probab=97.81 E-value=0.00092 Score=67.04 Aligned_cols=94 Identities=13% Similarity=0.020 Sum_probs=61.8
Q ss_pred HHHHhhcC-CCEEEEecCC---------------HHHHHHHHHc------CCcEEEEcCCCCC---CCC---Cccc--hH
Q 017718 215 KWLQTITK-LPILVKGVLT---------------AEDARIAVQA------GAAGIIVSNHGAR---QLD---YVPA--TI 264 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~~---------------~~~a~~~~~~------G~d~i~vs~~gg~---~~~---~~~~--~~ 264 (367)
+.+|+.++ -.|.+|+... .+.++.+.+. |+|+|.|+..... ... .++. ..
T Consensus 223 ~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 302 (391)
T PLN02411 223 QAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEA 302 (391)
T ss_pred HHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchh
Confidence 37888774 2588888731 1124444442 5999999852110 000 0111 11
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
....++++.+ ++|||+.|+| +.+++.++++.| ||+|.+||++|.
T Consensus 303 ~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 303 QLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred HHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 3346677766 7899999999 679999999999 999999999985
No 151
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.80 E-value=0.0014 Score=62.65 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=64.1
Q ss_pred HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
++.+|+..+ .+| --.+-+.++++.+.++|+|+|.+.| ...+.+.++.+..+.++|+.++||| +.+.+
T Consensus 180 v~~~r~~~~~~~I-~VEv~tleea~eA~~~gaD~I~LD~----------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni 247 (277)
T PRK05742 180 VAAAHRIAPGKPV-EVEVESLDELRQALAAGADIVMLDE----------LSLDDMREAVRLTAGRAKLEASGGI-NESTL 247 (277)
T ss_pred HHHHHHhCCCCeE-EEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHH
Confidence 445555432 333 3345789999999999999998854 2344566666555458999999999 68999
Q ss_pred HHHHHcCCCEEEechHHH
Q 017718 293 FKALALGASGIFIGRPVV 310 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l 310 (367)
.++...|+|.+.+|.+..
T Consensus 248 ~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 248 RVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHcCCCEEEEChhhc
Confidence 999999999999998654
No 152
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.77 E-value=0.00012 Score=72.73 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=61.8
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++. .+++.++.. ...+-++.+.++|+|.|+++++...+.+.+.. .+..+.++.+.. ++|||+ |+|.+.+++
T Consensus 126 ~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-G~V~t~e~A 201 (368)
T PRK08649 126 EIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-GGCVTYTTA 201 (368)
T ss_pred HHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-eCCCCHHHH
Confidence 55553 455544442 13467899999999999994322123333332 345566666655 799999 999999999
Q ss_pred HHHHHcCCCEEEech
Q 017718 293 FKALALGASGIFIGR 307 (367)
Q Consensus 293 ~kal~lGAd~V~ig~ 307 (367)
.+++.+|||+|++|+
T Consensus 202 ~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 202 LHLMRTGAAGVLVGI 216 (368)
T ss_pred HHHHHcCCCEEEECC
Confidence 999999999999996
No 153
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.77 E-value=0.00021 Score=65.43 Aligned_cols=35 Identities=40% Similarity=0.765 Sum_probs=31.1
Q ss_pred CCcE--EEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 277 RIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 277 ~~~v--ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
++|| |+.|||-|+.|++-.+.||||+|++|+.++.
T Consensus 206 rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 206 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 5555 6899999999999999999999999997765
No 154
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.76 E-value=0.0042 Score=57.02 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------C-CH----HHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEec
Q 017718 89 GEYATARAASAAGTIMTLSSWST------S-SV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~------~-~~----e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itv 157 (367)
.|+.-.+.+.+.|..-.++|..+ . .. .++++..+++..+|++ ..|.+.+.+..++..+.+ ..++|-+
T Consensus 7 a~~~ei~~~~~~~~i~GvTTNPsll~k~~~~~~~~~~~~i~~~~~~~v~~qv~-~~~~e~~i~~a~~l~~~~-~~~~iKI 84 (211)
T cd00956 7 ADLEEIKKASETGLLDGVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVV-STDAEGMVAEARKLASLG-GNVVVKI 84 (211)
T ss_pred CCHHHHHHHHhcCCcCccccCHHHHHhcCCcCHHHHHHHHHHhcCCCEEEEEE-eCCHHHHHHHHHHHHHhC-CCEEEEE
Confidence 46666777777776655655421 1 22 2333444567888987 567666655555555442 2233322
Q ss_pred CCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHH
Q 017718 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDAR 237 (367)
Q Consensus 158 d~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~ 237 (367)
|.. . .+. . ..+.|++. ++++.+-.+.+.+.|.
T Consensus 85 --P~T------------------~----------------~gl-~----------ai~~L~~~-gi~v~~T~V~s~~Qa~ 116 (211)
T cd00956 85 --PVT------------------E----------------DGL-K----------AIKKLSEE-GIKTNVTAIFSAAQAL 116 (211)
T ss_pred --cCc------------------H----------------hHH-H----------HHHHHHHc-CCceeeEEecCHHHHH
Confidence 110 0 000 0 11244433 7899999999999999
Q ss_pred HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 238 ~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
.+.++|+++|.. +-||--+.+....+.+.++.+.... +..|++ .|+++..++..++.+|||.|-+.-.++..+.
T Consensus 117 ~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~ 193 (211)
T cd00956 117 LAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRNPQHVIEAALAGADAITLPPDVLEQLL 193 (211)
T ss_pred HHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCCHHHHHHHHHcCCCEEEeCHHHHHHHh
Confidence 999999998554 4455444555666666666655421 344555 5699999999999999999999998887765
Q ss_pred c
Q 017718 315 A 315 (367)
Q Consensus 315 ~ 315 (367)
.
T Consensus 194 ~ 194 (211)
T cd00956 194 K 194 (211)
T ss_pred c
Confidence 4
No 155
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.75 E-value=0.00059 Score=62.21 Aligned_cols=65 Identities=32% Similarity=0.354 Sum_probs=48.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
++.+.++|+|+|-.+ +|-. ....+.+.+..+.+.++.++||-++|||++.+++++.+.+||+-++
T Consensus 137 ~ria~e~GaD~IKTs-TG~~---~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 137 CEIAIEAGADFIKTS-TGFG---PGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred HHHHHHhCCCEEEcC-CCCC---CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 678999999999986 2321 2224444444444444458999999999999999999999998764
No 156
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.75 E-value=0.012 Score=56.31 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=76.0
Q ss_pred cCCHHHHHHHH-HcCCcEEEEc--C-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHcCCCEE
Q 017718 230 VLTAEDARIAV-QAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 303 (367)
Q Consensus 230 v~~~~~a~~~~-~~G~d~i~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G--GI~~~~dv~kal~lGAd~V 303 (367)
..++++|+.+. +.|+|++-++ + ||-+ ....+-.++.|.++.+.+ ++|+++-| ||. .+++.+++..|++.|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~ki 227 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKI 227 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 36789998887 4699999994 3 4532 222234788999999887 79999999 875 588999999999999
Q ss_pred EechHHHHHhhc-------cCh-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G~-----~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
-+.|.+..+... ..+ .-.....+.+++..+..|+.+|..
T Consensus 228 nv~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 228 NVATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EEhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988654210 000 112333455666667777777753
No 157
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.74 E-value=0.00076 Score=68.72 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=79.7
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
..++-.+| .+-+.++++++.++|++.|-+-|..=.++.. ..+.-.++...++.++.+|+.+||.+++|+.++ ..|
T Consensus 157 ~lGl~~lv-Evh~~~El~~al~~~a~iiGiNnRdL~t~~v---d~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~ 231 (454)
T PRK09427 157 SLNMGVLT-EVSNEEELERAIALGAKVIGINNRNLRDLSI---DLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPF 231 (454)
T ss_pred HcCCcEEE-EECCHHHHHHHHhCCCCEEEEeCCCCccceE---CHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-Hhc
Confidence 34665555 6788999999999999988887643322322 333344445556667889999999999999886 458
Q ss_pred CCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 300 Ad~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
||+|.||+.+|.+ .. ..+.+..+ +......||.++.+++.
T Consensus 232 ~davLiG~~lm~~---~d---~~~~~~~L---~~~~vKICGit~~eda~ 271 (454)
T PRK09427 232 ANGFLIGSSLMAE---DD---LELAVRKL---ILGENKVCGLTRPQDAK 271 (454)
T ss_pred CCEEEECHHHcCC---CC---HHHHHHHH---hccccccCCCCCHHHHH
Confidence 9999999999863 11 12233333 22345779999988876
No 158
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.73 E-value=0.00015 Score=67.16 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=53.8
Q ss_pred HHHHHHcCCcEEEEcCCC--CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
...+.+.|+ ++++..-. |+ ...+.++.+.++.+.+ .+|||++|||++.+|+.++..+||++|.+|+++..
T Consensus 147 ~~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 147 RDFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 345566787 66654311 21 1235688888888776 79999999999999999988899999999999875
No 159
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.72 E-value=0.00086 Score=63.74 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=59.8
Q ss_pred hhcCCCEEEEe---------cCCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 219 TITKLPILVKG---------VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 219 ~~~~~Pv~vK~---------v~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
..+++|+++-. ..+.+. ++.+.+.|+|+|-.+-+| ..+.+.++.+.. ++||+++||
T Consensus 136 ~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV~a~GG 204 (267)
T PRK07226 136 EEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPVVIAGG 204 (267)
T ss_pred HHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCEEEEeC
Confidence 34688887731 122222 678889999999886321 346677766544 799999999
Q ss_pred CC--CHHHHHHHH----HcCCCEEEechHHHH
Q 017718 286 VR--RGTDVFKAL----ALGASGIFIGRPVVY 311 (367)
Q Consensus 286 I~--~~~dv~kal----~lGAd~V~ig~~~l~ 311 (367)
|+ |.+++++.+ .+||+++.+||.++.
T Consensus 205 i~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 205 PKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 99 777777765 899999999998875
No 160
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.69 E-value=0.0045 Score=58.43 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHcCCcEEEE-cCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIV-SNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~v-s~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+-.++..+..=-+|.+ |-.|=|. ........+.+..+++.. ++||..-=||++++++.+.... ||+|.+||
T Consensus 158 t~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGS 234 (265)
T COG0159 158 TPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGS 234 (265)
T ss_pred CCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcH
Confidence 3445555555554334443 3222221 111112456677776665 8999987799999999999999 99999999
Q ss_pred HHHHHhh
Q 017718 308 PVVYSLA 314 (367)
Q Consensus 308 ~~l~~l~ 314 (367)
+++.-+.
T Consensus 235 AiV~~i~ 241 (265)
T COG0159 235 AIVKIIE 241 (265)
T ss_pred HHHHHHH
Confidence 9987654
No 161
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.68 E-value=0.00081 Score=63.92 Aligned_cols=119 Identities=19% Similarity=0.115 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.+..+.|+++|++.+.+++.||.. .+..- +.. .+. +| -+...++
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd------~~~~g----g~~-----------------------Rm~--~p-~~I~aIk 70 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD------IRAAG----GVA-----------------------RMA--DP-KMIEEIM 70 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch------HhhcC----Cee-----------------------ecC--CH-HHHHHHH
Confidence 345788999999999999999973 22110 000 010 11 1345888
Q ss_pred hhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 219 TITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 219 ~~~~~Pv~vK~v~-~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
+.+++||+.|... ...+|+.+.++|+|.|.-|..- .|..+.+..++... ++|+ ..|++|-++++.++.
T Consensus 71 ~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~f--mad~~~l~EAlrai~ 139 (293)
T PRK04180 71 DAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVPF--VCGARNLGEALRRIA 139 (293)
T ss_pred HhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCCE--EccCCCHHHHHHHHH
Confidence 8899999999874 4789999999999999643211 12334455554433 4554 457999999999999
Q ss_pred cCCCEEE
Q 017718 298 LGASGIF 304 (367)
Q Consensus 298 lGAd~V~ 304 (367)
+|||.|.
T Consensus 140 ~GadmI~ 146 (293)
T PRK04180 140 EGAAMIR 146 (293)
T ss_pred CCCCeee
Confidence 9999874
No 162
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.68 E-value=0.00072 Score=60.86 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=61.3
Q ss_pred EecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-C--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 228 KGVLTAEDARIAVQAGAAGIIVSNHGARQLD-Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 228 K~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
-.+.+.+++..+.+.|+|+|.++.-.-+... . .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.
T Consensus 101 ~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 101 VSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVA 178 (196)
T ss_pred EeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 3457788888899999999998653222111 1 1224677777766542 5999999999 58999999999999999
Q ss_pred echHHHH
Q 017718 305 IGRPVVY 311 (367)
Q Consensus 305 ig~~~l~ 311 (367)
+|+.++-
T Consensus 179 ~~~~i~~ 185 (196)
T TIGR00693 179 VVSAIMQ 185 (196)
T ss_pred EhHHhhC
Confidence 9998763
No 163
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.67 E-value=0.0015 Score=62.20 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=66.9
Q ss_pred cHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.++.+|+..+ ...+.-.+.+.++++.+.++|+|+|-+.+- ..+.+.++.+..+.++|+.++||| +.+.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHH
Confidence 3456777654 223333457899999999999999999652 246677777665446999999999 6899
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.++...|+|++.+|++..
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999998654
No 164
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.67 E-value=0.00039 Score=65.12 Aligned_cols=75 Identities=27% Similarity=0.231 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|+|.|.+-.--+. .+.....+.+.++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+..+.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 36688889999999887542121 13445678999998877 79999999999999999999999999999997764
No 165
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.66 E-value=0.003 Score=60.61 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=61.7
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGT 290 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~ 290 (367)
.+|+..+ .+| --.+.+.+++..+.++|+|+|-+.|- ++ +.+.++.+.+ ..++++.++||| +.+
T Consensus 188 ~~r~~~~~~~~I-~VEv~tleea~eA~~~GaD~I~LDn~-------~~---e~l~~av~~~~~~~~~i~leAsGGI-t~~ 255 (288)
T PRK07428 188 RIRQRIPYPLTI-EVETETLEQVQEALEYGADIIMLDNM-------PV---DLMQQAVQLIRQQNPRVKIEASGNI-TLE 255 (288)
T ss_pred HHHHhCCCCCEE-EEECCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHHHhcCCCeEEEEECCC-CHH
Confidence 5666554 223 22457899999999999999999752 22 3334433332 357999999999 699
Q ss_pred HHHHHHHcCCCEEEechHHH
Q 017718 291 DVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l 310 (367)
.+.++.++|+|.+.+|+++.
T Consensus 256 ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 256 TIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred HHHHHHHcCCCEEEEchhhh
Confidence 99999999999999999765
No 166
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.65 E-value=0.00033 Score=65.38 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+-++.+.+.|+..+++..- -|+ ..-+.++.+.++.+.. ++||++.|||++.+|+.+++.+|+++|.+|+++.
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt---~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~ 225 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGK---MSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAH 225 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCC---CCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHH
Confidence 35577888999998887542 121 1225677888887765 7999999999999999999999999999999886
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
-
T Consensus 226 ~ 226 (234)
T PRK13587 226 Q 226 (234)
T ss_pred h
Confidence 4
No 167
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.65 E-value=0.0012 Score=61.20 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=66.5
Q ss_pred HHHHHhhcCCCEEEEe--cCCHHHHHHHHHcCCcEEEEcCCCCCCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 214 WKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~--v~~~~~a~~~~~~G~d~i~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
...+|+..+--.++.. ..+.+++..+.+.|+|+|.++.---+.. +..+...+.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 3455544432234433 2467888888899999999964211111 12233456777776655 7999999999 899
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999998874
No 168
>PRK01362 putative translaldolase; Provisional
Probab=97.65 E-value=0.0087 Score=55.08 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=71.4
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~ 297 (367)
-++++.+-.+.+...|..+.++|+++|.. .=||--+.+......+.++.+.+. .+..|++ ..+++..++.++..
T Consensus 100 ~Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~~~v~~~~~ 176 (214)
T PRK01362 100 EGIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHPMHVLEAAL 176 (214)
T ss_pred CCCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCHHHHHHHHH
Confidence 38899999999999999999999998876 334444455566666666665542 2455555 55999999999999
Q ss_pred cCCCEEEechHHHHHhhc
Q 017718 298 LGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~ 315 (367)
+|||.+-+.-.++..+..
T Consensus 177 ~G~d~iTi~~~vl~~l~~ 194 (214)
T PRK01362 177 AGADIATIPYKVIKQLFK 194 (214)
T ss_pred cCCCEEecCHHHHHHHHc
Confidence 999999999888877653
No 169
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.64 E-value=0.00053 Score=61.92 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=65.7
Q ss_pred HHHhhcCCCEEE--EecCCHHHHHHHHHcCCcEEEEcCCCCC-CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~v--K~v~~~~~a~~~~~~G~d~i~vs~~gg~-~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++ .++++++ =...+++++..+.+.|+|.+.+.- +.. +..+.+...+.++++.+.. ++|++++|||+ .+++
T Consensus 98 ~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~~~i 172 (202)
T cd04726 98 AAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHR-GIDAQAAGGWWPEDDLKKVKKLL--GVKVAVAGGIT-PDTL 172 (202)
T ss_pred HHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcC-cccccccCCCCCHHHHHHHHhhc--CCCEEEECCcC-HHHH
Confidence 4443 5777775 355788888888999999988831 111 1111344567777776543 79999999995 9999
Q ss_pred HHHHHcCCCEEEechHHH
Q 017718 293 FKALALGASGIFIGRPVV 310 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l 310 (367)
.+++..|||+|.+||+++
T Consensus 173 ~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 173 PEFKKAGADIVIVGRAIT 190 (202)
T ss_pred HHHHhcCCCEEEEeehhc
Confidence 999999999999999874
No 170
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.63 E-value=0.0018 Score=63.20 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=96.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhh---h-cCCCCccccccccccccCccccc--cchhhHHHhhhccCc-cc
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVAGQIDR-SL 212 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~---~-~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~-~~ 212 (367)
++++.-++.|+.+|-|-.|....+-...+++. . ..+|- -.+.+- +....+.+. .++..--.+....++ .+
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv--LrKDFI-ID~yQI~eAr~~GADAVLLIaaiL~~~~L 219 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL--LCKEFI-VDAWQIYYARSKGADAILLIAAVLPDLDI 219 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE--eecccc-CCHHHHHHHHHcCCCcHHHHHHhCCHHHH
Confidence 45666678899999999998887666655543 2 33331 111110 000000000 011000011111111 11
Q ss_pred -cHHHHHhhcCCCEEEEecCCHHHHHHHHHc-CCcEEEEcCCCCCCCCCccchHHHHHHHH--HHh-cCCCcEEEecCCC
Q 017718 213 -SWKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVV--KAT-QGRIPVFLDGGVR 287 (367)
Q Consensus 213 -~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~--~~~-~~~~~via~GGI~ 287 (367)
.+-.+.+..++-++| .+-+.++++++.++ |++.|-|-|..=.++.....+..-|.... +.+ +.++.+++.+||.
T Consensus 220 ~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~ 298 (338)
T PLN02460 220 KYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLF 298 (338)
T ss_pred HHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCC
Confidence 111333445766655 67889999999998 99988887743333333333322222200 022 2356789999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+++|+..+..+|||+|.||..++.
T Consensus 299 t~~Dv~~l~~~GadAvLVGEsLMr 322 (338)
T PLN02460 299 TPDDVAYVQNAGVKAVLVGESLVK 322 (338)
T ss_pred CHHHHHHHHHCCCCEEEECHHHhC
Confidence 999999999999999999999986
No 171
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.61 E-value=0.0041 Score=56.34 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
.+.......++|++.+... |++.....+...+.+.++++..+. .+|++++|||+ .+++.+++..|||.+.+||+
T Consensus 117 ~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsa 195 (210)
T TIGR01163 117 LEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSA 195 (210)
T ss_pred HHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChH
Confidence 3333344557899776431 222222234455666666655431 37899999996 79999999999999999998
Q ss_pred HH
Q 017718 309 VV 310 (367)
Q Consensus 309 ~l 310 (367)
++
T Consensus 196 i~ 197 (210)
T TIGR01163 196 IF 197 (210)
T ss_pred Hh
Confidence 86
No 172
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.61 E-value=0.0033 Score=58.09 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 262 ATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
...+.+.++++.... .+||.++|||. .+.+.+....|||.+.+||.++
T Consensus 149 ~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 149 HTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred hHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 355666666665432 48999999999 8899999999999999999854
No 173
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.60 E-value=0.012 Score=54.40 Aligned_cols=187 Identities=18% Similarity=0.142 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHH----HHHhhCC--CceEEEEeecCCHHHHHHHHHHHH-HcCCcEEE
Q 017718 89 GEYATARAASAAGTIMTLSSWST-------SSVE----EVASTGP--GIRFFQLYVYKDRNVVAQLVRRAE-RAGFKAIA 154 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~-------~~~e----~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ra~-~~G~~ai~ 154 (367)
.|+.-.+.+.+.|..-.++|..+ ...+ ++++..+ .+..+|++ ..|.+.+.+..++.. ..| +.++
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~-~~~~~~mi~eA~~l~~~~~-~nv~ 85 (222)
T PRK12656 8 LNLEAIKKWHEILPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVV-AQDYEGILKDAHEIRRQCG-DDVY 85 (222)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEE-ECCHHHHHHHHHHHHHHhC-CCEE
Confidence 46777777888887777776522 1222 3444433 47889997 566665544444443 234 3233
Q ss_pred EecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHH
Q 017718 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAE 234 (367)
Q Consensus 155 itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~ 234 (367)
|-+ |.. .. ++ . ..+.|++ -++++.+-.+.+.+
T Consensus 86 VKI--P~T------------------~~----------------Gl-~----------Ai~~L~~-~Gi~vn~T~ifs~~ 117 (222)
T PRK12656 86 IKV--PVT------------------PA----------------GL-A----------AIKTLKA-EGYHITATAIYTVF 117 (222)
T ss_pred EEe--CCC------------------HH----------------HH-H----------HHHHHHH-CCCceEEeeeCCHH
Confidence 322 110 00 00 0 1113332 38999999999999
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|..+.++|+++|.. .=||--+.|......+.++.+.+ +.+..|++.+ +++..++.+++.+|||.+-+.-.++.
T Consensus 118 Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~a~~~G~d~vTvp~~vl~ 194 (222)
T PRK12656 118 QGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNVAQVNKAFALGAQAVTAGPDVFE 194 (222)
T ss_pred HHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHHHcCCCEEecCHHHHH
Confidence 999999999998765 33443333333445555554443 3356777765 99999999999999999999988887
Q ss_pred HhhccC--hHHHHHHHHHH
Q 017718 312 SLAAEG--EKGVRRVLEML 328 (367)
Q Consensus 312 ~l~~~G--~~~v~~~i~~l 328 (367)
.+..+. ..+++.+.+.|
T Consensus 195 ~l~~~p~t~~~~~~F~~dw 213 (222)
T PRK12656 195 AAFAMPSIQKAVDDFADDW 213 (222)
T ss_pred HHhcCCcHHHHHHHHHHHH
Confidence 664322 23444444443
No 174
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.59 E-value=0.00034 Score=65.03 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|+..|++..-..-....| +.++.+.++++.+ ++|||++|||++.+|+.++...|+++|.+|++|..
T Consensus 150 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G-~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 150 EEFAKRLEELGAGEIILTDIDRDGTMQG-PDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEETTTTTTSSS---HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred HHHHHHHHhcCCcEEEEeeccccCCcCC-CCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 3557889999999998864211001122 4668888888877 89999999999999999999999999999999864
No 175
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.57 E-value=0.0011 Score=65.39 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=64.3
Q ss_pred CEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC-C-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 224 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 224 Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd 301 (367)
.++---+.+.+++..+.+.|+|+|.++--..+. . +..+..++.+..+.+.. ++||++-|||. .+++.+.+.+||+
T Consensus 241 ~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ni~~l~~~Ga~ 317 (347)
T PRK02615 241 KIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSNIPEVLQAGAK 317 (347)
T ss_pred CEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCc
Confidence 344334467899999999999999986533321 1 11234567777776655 79999999995 8899999999999
Q ss_pred EEEechHHHH
Q 017718 302 GIFIGRPVVY 311 (367)
Q Consensus 302 ~V~ig~~~l~ 311 (367)
+|.+++.++-
T Consensus 318 gVAvisaI~~ 327 (347)
T PRK02615 318 RVAVVRAIMG 327 (347)
T ss_pred EEEEeHHHhC
Confidence 9999998863
No 176
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.55 E-value=0.0043 Score=59.27 Aligned_cols=147 Identities=22% Similarity=0.192 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHh---hhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADI---KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
.+.++++.+++.+.+..++.--...+|.|.-+. +.|...|.++.... .+.. + .+ |+.-. .+
T Consensus 106 ~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd--~vLi----k--dn----Hi~~~---~i~ 170 (278)
T PRK08385 106 ETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSD--AILI----K--DN----HLALV---PLE 170 (278)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcc--cEEE----c--cC----HHHHH---HHH
Confidence 456677777777888888877777788776332 33332232211100 0000 0 00 00000 01
Q ss_pred -cHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEEecC
Q 017718 213 -SWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGG 285 (367)
Q Consensus 213 -~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via~GG 285 (367)
..+.+|+.. ..+|.| .+-+.++++.+.++|+|.|.+.|- +.+.+.++++.+ +.++.+.++||
T Consensus 171 ~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 112455443 245433 568999999999999999988772 233444444332 24788999999
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
| +.+.+.++..+|+|.+.+|.+..
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 89999999999999999998664
No 177
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.55 E-value=0.022 Score=52.63 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CC----HHHHHhhCC--CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEe
Q 017718 89 GEYATARAASAAGTIMTLSSWST------SS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~------~~----~e~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 156 (367)
.|+.-.+.+.+.|..-.++|..+ .+ +.++++..+ ++..+|+. ..|.+.+.+..++..+.+- .++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~~-ni~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSIIA-DIVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 46777778888888777776532 22 234444433 46778987 5666655444444444432 23332
Q ss_pred cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHH
Q 017718 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDA 236 (367)
Q Consensus 157 vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a 236 (367)
+ |.. .. ++ . ..+.|++ -++++.+-.+.+.+.|
T Consensus 86 I--P~T------------------~~----------------Gl-~----------A~~~L~~-~GI~vn~T~vfs~~Qa 117 (220)
T PRK12653 86 V--PVT------------------AE----------------GL-A----------AIKMLKA-EGIPTLGTAVYGAAQG 117 (220)
T ss_pred e--CCC------------------HH----------------HH-H----------HHHHHHH-cCCCeeEEEecCHHHH
Confidence 2 110 00 00 0 1113333 3899999999999999
Q ss_pred HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 237 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 237 ~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
..+..+|+++|... =||--+.+......+.++.+.. +.+..|++.+ +++..++.+++.+|||.+-+.-.++..+
T Consensus 118 ~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l 194 (220)
T PRK12653 118 LLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKTPRQALDCLLAGCESITLPLDVAQQM 194 (220)
T ss_pred HHHHhcCCcEEEee--cChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 99999999988763 2332233333444444444433 2356666654 9999999999999999999999888876
Q ss_pred hc
Q 017718 314 AA 315 (367)
Q Consensus 314 ~~ 315 (367)
..
T Consensus 195 ~~ 196 (220)
T PRK12653 195 IS 196 (220)
T ss_pred Hc
Confidence 54
No 178
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.54 E-value=0.006 Score=55.41 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=60.9
Q ss_pred HHHhhcCCCEEEEec-CCHHH--HHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 216 WLQTITKLPILVKGV-LTAED--ARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~--a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
.+++..+.+++-... .+..+ +..+.+.|+|++.+........ .+.+..++.++++. . ++|+++.||| +++
T Consensus 90 ~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGGI-~~~ 164 (203)
T cd00405 90 QLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S--RKPVILAGGL-TPD 164 (203)
T ss_pred HHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c--CCCEEEECCC-ChH
Confidence 555555666653222 22222 2345568999998865321111 12345677777664 2 7899999999 999
Q ss_pred HHHHHHHcC-CCEEEechHHH
Q 017718 291 DVFKALALG-ASGIFIGRPVV 310 (367)
Q Consensus 291 dv~kal~lG-Ad~V~ig~~~l 310 (367)
++.+++..| +++|-+.|.+.
T Consensus 165 Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 165 NVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred HHHHHHHhcCCCEEEcCCccc
Confidence 999999999 99999999765
No 179
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.54 E-value=0.01 Score=56.09 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=87.7
Q ss_pred HHHHhhCC-CceEEEEeecCCHH-HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCcc
Q 017718 115 EEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (367)
Q Consensus 115 e~i~~~~~-~~~~~QLy~~~d~~-~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~ 192 (367)
+++.+..+ .|.++--|.+.=.. -.++.+++++++|+++++| .|.|..
T Consensus 79 ~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIi-pDLP~e------------------------------ 127 (259)
T PF00290_consen 79 KEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLII-PDLPPE------------------------------ 127 (259)
T ss_dssp HHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEE-TTSBGG------------------------------
T ss_pred HHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEE-cCCChH------------------------------
Confidence 34442333 67778778421011 1467889999999999876 443320
Q ss_pred ccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCC-CCCCCc--cchHHHH
Q 017718 193 DEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGA-RQLDYV--PATIMAL 267 (367)
Q Consensus 193 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg-~~~~~~--~~~~~~l 267 (367)
..-.|....+..++.++.=.. .+.+-.+...+.+-.+|.+-..-| |..... ....+.+
T Consensus 128 -----------------e~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i 190 (259)
T PF00290_consen 128 -----------------ESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFI 190 (259)
T ss_dssp -----------------GHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHH
Confidence 000222222234544332222 445667776776667777633322 211111 2234567
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 268 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 268 ~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
..+++.. ++||++-=||++++|+.+.. .|||+|.||++++.-+...+
T Consensus 191 ~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 191 KRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp HHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred HHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 7776655 89999977999999999888 99999999999998665434
No 180
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.54 E-value=0.002 Score=59.78 Aligned_cols=65 Identities=31% Similarity=0.562 Sum_probs=51.6
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC--CCHHH----HHHHHHcCCCEEEechHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGTD----VFKALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI--~~~~d----v~kal~lGAd~V~ig~~~ 309 (367)
++.+.++|+|+|-+++.+ ..+.+.++.+.. ++||++.||+ .+.+| +..++.+||++|.+||.+
T Consensus 149 ~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i 217 (235)
T cd00958 149 ARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNI 217 (235)
T ss_pred HHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhh
Confidence 566889999999995322 456677777655 7899999997 66766 777788999999999988
Q ss_pred HH
Q 017718 310 VY 311 (367)
Q Consensus 310 l~ 311 (367)
+.
T Consensus 218 ~~ 219 (235)
T cd00958 218 FQ 219 (235)
T ss_pred hc
Confidence 74
No 181
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.54 E-value=0.001 Score=61.68 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=64.4
Q ss_pred HHHHHHHHHcC-CcEEEEcC-CCCCC-CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAG-AAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G-~d~i~vs~-~gg~~-~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.++...+.| +|+|.+.. +.|.. ....+...+.+.++++.. .++||.++||| +.+++.+.+.+|||.+.+||++
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHH
Confidence 45566666664 99996632 22222 223445667777776653 25799999999 7899999999999999999986
Q ss_pred HHHhhccChHHHHHHHHHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEMLREEFELAM 336 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l~~el~~~m 336 (367)
+. .+.....++.++++++..|
T Consensus 206 ~~------~~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 206 FG------APDYAEVISGLRASVEKAA 226 (229)
T ss_pred hC------CCCHHHHHHHHHHHHHHhh
Confidence 42 1223445666666665543
No 182
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=97.53 E-value=0.022 Score=52.60 Aligned_cols=187 Identities=18% Similarity=0.164 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CC----HHHHHhhCC--CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEe
Q 017718 89 GEYATARAASAAGTIMTLSSWST------SS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~------~~----~e~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 156 (367)
+|+.-.+.+.+.|..-.++|..+ .+ +.++++..+ ++..+|++ ..|.+.+.+-.++..+.+- .++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~qv~-~~d~e~mi~eA~~l~~~~~-nv~IK 85 (220)
T PRK12655 8 ANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTM-SRDAQGMVEEAKRLRNAIP-GIVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCCEEEEEe-eCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 46677777888887777776532 22 234444432 56777987 5566655444444444432 23332
Q ss_pred cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHH
Q 017718 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDA 236 (367)
Q Consensus 157 vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a 236 (367)
+ |+. .. ++ . ..+.|++ -++++.+-.+.+.+.|
T Consensus 86 I--P~T------------------~~----------------Gl-~----------Ai~~L~~-~GI~vn~T~vfs~~Qa 117 (220)
T PRK12655 86 I--PVT------------------AE----------------GL-A----------AIKKLKK-EGIPTLGTAVYSAAQG 117 (220)
T ss_pred e--CCC------------------HH----------------HH-H----------HHHHHHH-CCCceeEeEecCHHHH
Confidence 2 110 00 00 0 1113333 3899999999999999
Q ss_pred HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 237 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 237 ~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
..+..+|+++|... =||--+.|......+.++.+.. +.+..|++.+ +++..++.+++.+|||.+-+.-.++..+
T Consensus 118 ~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l 194 (220)
T PRK12655 118 LLAALAGAKYVAPY--VNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKTPRQALDCLLAGCQSITLPLDVAQQM 194 (220)
T ss_pred HHHHHcCCeEEEee--cchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 99999999987752 2332233333455555554443 2356666655 9999999999999999999999888776
Q ss_pred hccC--hHHHHHHHHHH
Q 017718 314 AAEG--EKGVRRVLEML 328 (367)
Q Consensus 314 ~~~G--~~~v~~~i~~l 328 (367)
..+- ..+++.+.+.|
T Consensus 195 ~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 195 LNTPAVESAIEKFEQDW 211 (220)
T ss_pred HcCCChHHHHHHHHHHH
Confidence 5432 24555555444
No 183
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.53 E-value=0.0037 Score=59.61 Aligned_cols=83 Identities=23% Similarity=0.243 Sum_probs=57.8
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv 292 (367)
.+|+..+-..+.-.+.+.+++..+.++|+|+|-+++- .+.. +.++.+.++ .++|++++||| +.+.+
T Consensus 176 ~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~-------~p~~---l~~~~~~~~~~~~~i~i~AsGGI-~~~ni 244 (272)
T cd01573 176 RLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKF-------SPEE---LAELVPKLRSLAPPVLLAAAGGI-NIENA 244 (272)
T ss_pred HHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCC-------CHHH---HHHHHHHHhccCCCceEEEECCC-CHHHH
Confidence 5555443222333457899999999999999998651 1112 233333222 26999999999 88999
Q ss_pred HHHHHcCCCEEEechHH
Q 017718 293 FKALALGASGIFIGRPV 309 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~ 309 (367)
.++...|+|++.+|..+
T Consensus 245 ~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 245 AAYAAAGADILVTSAPY 261 (272)
T ss_pred HHHHHcCCcEEEEChhh
Confidence 99999999999777653
No 184
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.51 E-value=0.00066 Score=62.98 Aligned_cols=75 Identities=25% Similarity=0.323 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.|.+..-.+ .........+.+.++.+.+ .+||+++|||++.+|+.+++..||+.|.+|+..+
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l 107 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAAL 107 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 3568888999999988865332 1123346778888888876 7999999999999999999999999999999765
No 185
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.51 E-value=0.00054 Score=63.83 Aligned_cols=75 Identities=28% Similarity=0.445 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.++.+.+.|++.+.+-...+ .........+.+.++.+.. .+|++++|||++.+|+.+++.+|||.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 4678899999999998854221 1123345677888887766 7999999999999999999999999999999665
No 186
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.50 E-value=0.0005 Score=64.09 Aligned_cols=75 Identities=25% Similarity=0.243 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+.++.+.+. ++.+++.+-.+ ......+..+.+.++.+.. .+||++.|||++.+|+.+++.+||++|.+|+++..+
T Consensus 150 ~~~~~~~~~-~~~li~~di~~-~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 150 ELLRRLAKW-PEELIVLDIDR-VGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHHHh-CCeEEEEEcCc-cccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 345667777 88777754211 0011235677888888766 799999999999999999999999999999998753
No 187
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.48 E-value=0.00093 Score=67.81 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=65.4
Q ss_pred HHHhhcCCCEEEE-ec-CC-HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVK-GV-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK-~v-~~-~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
..++ .++++++. .. .+ .+.++.+.+.|+|+|.+. .|.+....++...+.|+++++.. ++||++.||| +.+.+
T Consensus 102 ~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~ 176 (430)
T PRK07028 102 AARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DAETA 176 (430)
T ss_pred HHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CHHHH
Confidence 3444 57777763 22 23 466788899999999774 23221122344567788877655 6999999999 68999
Q ss_pred HHHHHcCCCEEEechHHHH
Q 017718 293 FKALALGASGIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~ 311 (367)
.+++..|||.+.+||.++.
T Consensus 177 ~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 177 AKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHcCCCEEEEChHHcC
Confidence 9999999999999998753
No 188
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.48 E-value=0.0038 Score=56.86 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=83.4
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhh
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (367)
.+-+....+.+...++++.+.+.|++.+-||+++|.. .+
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a--------------------------------------~~--- 44 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAA--------------------------------------LD--- 44 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccH--------------------------------------HH---
Confidence 3445557788999999999999999999999987631 00
Q ss_pred hccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 206 GQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 206 ~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.++.+++.. ++-|.+..|++.++++.+.++|+++|+--+ ...+++..+.+ . ++|.+ =
T Consensus 45 -------~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----------~~~~vi~~a~~-~--~i~~i--P 102 (201)
T PRK06015 45 -------AIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----------TTQELLAAAND-S--DVPLL--P 102 (201)
T ss_pred -------HHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--C
Confidence 122444444 356777778999999999999999986421 12333433322 2 45544 5
Q ss_pred CCCCHHHHHHHHHcCCCEEEec
Q 017718 285 GVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig 306 (367)
|+.|+.++..++.+||+.|=+-
T Consensus 103 G~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 103 GAATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred CCCCHHHHHHHHHCCCCEEEEC
Confidence 8999999999999999987543
No 189
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.45 E-value=0.00098 Score=62.08 Aligned_cols=87 Identities=29% Similarity=0.424 Sum_probs=59.3
Q ss_pred hcCCCEEEEecCCHH-------------HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCc----EEE
Q 017718 220 ITKLPILVKGVLTAE-------------DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP----VFL 282 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~-------------~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~----via 282 (367)
.+++|+++=.....+ .++.+.++|+|.|-.+- |+. ........+.+.++.+.. .+| |.+
T Consensus 123 ~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~t-g~~-~~~t~~~~~~~~~~~~~~--~~p~~~~Vk~ 198 (236)
T PF01791_consen 123 KYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTST-GKP-VGATPEDVELMRKAVEAA--PVPGKVGVKA 198 (236)
T ss_dssp TSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE--SSS-SCSHHHHHHHHHHHHHTH--SSTTTSEEEE
T ss_pred cCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecC-Ccc-ccccHHHHHHHHHHHHhc--CCCcceEEEE
Confidence 457888887443322 26778999999999974 322 222233444555555433 466 999
Q ss_pred ecCC------CCHHHHHHHHHcCC--CEEEechHHH
Q 017718 283 DGGV------RRGTDVFKALALGA--SGIFIGRPVV 310 (367)
Q Consensus 283 ~GGI------~~~~dv~kal~lGA--d~V~ig~~~l 310 (367)
+||| ++.+++.+++.+|| .++..||.+.
T Consensus 199 sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 199 SGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp ESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred eCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 9999 99999999999999 7888888653
No 190
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.44 E-value=0.0073 Score=57.75 Aligned_cols=84 Identities=24% Similarity=0.133 Sum_probs=63.8
Q ss_pred HHHhhcCCC-EEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~~P-v~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+|+..+-. .+-=.+.+.++++.+.+.|+|+|.+.+ -..+.+.++++..+.++|+.+.||| +.+++.+
T Consensus 180 ~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~ 248 (277)
T PRK08072 180 SVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLENLPA 248 (277)
T ss_pred HHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHHHHHH
Confidence 566655422 222234788999999999999998843 2336677776665446889999999 8899999
Q ss_pred HHHcCCCEEEechHHH
Q 017718 295 ALALGASGIFIGRPVV 310 (367)
Q Consensus 295 al~lGAd~V~ig~~~l 310 (367)
+...|+|.+.+|.+..
T Consensus 249 ~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 249 YGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHcCCCEEEEChhhc
Confidence 9999999999998664
No 191
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.44 E-value=0.00083 Score=64.94 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=63.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-+++=...++..++++.+.|+-++.--.. -|+ ..+....+.|..+.+.. ++||+.++||.+++|+.+++.+||
T Consensus 197 Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGs--g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGa 272 (326)
T PRK11840 197 GFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGS--GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGC 272 (326)
T ss_pred CCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 3334333457899999999999954443111 111 12344777787777764 799999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.+.+++..
T Consensus 273 dgVL~nSaIa~ 283 (326)
T PRK11840 273 DGVLMNTAIAE 283 (326)
T ss_pred CEEEEcceecc
Confidence 99999997753
No 192
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.0006 Score=62.50 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-|..-...++-.|+++.++|+.+|.=-+. -|+ .-|+-+.+.|.-|++.. ++|||.|-||.++.|+..++.+|+
T Consensus 130 GF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~ 205 (262)
T COG2022 130 GFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGA 205 (262)
T ss_pred CCEEeeccCCCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhccc
Confidence 3444444446677899999999988763221 111 12455677787777776 899999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.+-+++--
T Consensus 206 DaVL~NTAiA~ 216 (262)
T COG2022 206 DAVLLNTAIAR 216 (262)
T ss_pred ceeehhhHhhc
Confidence 99999997743
No 193
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.41 E-value=0.00073 Score=62.81 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.|+...+. ++.+.+-.--| ...+.+..++.+.++.+.+ .+||+++|||++-+|+.+++.+||+.|.+|+..+
T Consensus 34 ~~a~~~~~~-~~~l~ivDldg-a~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDG-AFEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcc-hhcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 456777776 88887743222 1223456788899988766 7999999999999999999999999999999754
No 194
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00098 Score=61.83 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l 310 (367)
+.+++..+.|+..|+++.-. .|+ .-+.++.+.++.+++ ++|||++|||++-+|+..+-.+ |..+|.+||+++
T Consensus 151 ~l~~~~~~~g~~~ii~TdI~---~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 151 ELAKRLEEVGLAHILYTDIS---RDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred HHHHHHHhcCCCeEEEEecc---cccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 56889999999999986521 111 235788889999888 8999999999999999999999 999999999987
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
-
T Consensus 226 ~ 226 (241)
T COG0106 226 E 226 (241)
T ss_pred c
Confidence 5
No 195
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0011 Score=60.90 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|++-.+.|||-++.-.-.. ..++....++.+.++++.+ -+|+..-|||++-+|+.+.|.+|||-|.|.++.+.
T Consensus 33 VelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 4779999999999998733111 1223345778888888877 79999999999999999999999999999997764
No 196
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.40 E-value=0.00076 Score=63.22 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-----C-CCEEEe
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFI 305 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-----G-Ad~V~i 305 (367)
+-++.+.+.|+..|++.+- -|+. .| +.++.+.++.+.. ++|||++|||++.+|+.++..+ | +++|.+
T Consensus 148 e~~~~~~~~g~~~ii~tdI~rdGt~--~G-~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 148 SLLKRLKEYGLEEIVHTEIEKDGTL--QE-HDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred HHHHHHHhcCCCEEEEEeechhhcC--CC-cCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 5588899999999998641 1211 22 5778888888775 8999999999999999999987 6 999999
Q ss_pred chHHHH
Q 017718 306 GRPVVY 311 (367)
Q Consensus 306 g~~~l~ 311 (367)
|+++..
T Consensus 223 g~Al~~ 228 (241)
T PRK14114 223 GRAFLE 228 (241)
T ss_pred ehHHHC
Confidence 999865
No 197
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.40 E-value=0.0073 Score=57.53 Aligned_cols=85 Identities=26% Similarity=0.243 Sum_probs=62.6
Q ss_pred HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC--CCcEEEecCCCCHH
Q 017718 214 WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGT 290 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~~~via~GGI~~~~ 290 (367)
++.+|+..+ ...+.-.+.+.+++..+.++|+|+|-+.+- ..+.+.++.+.++. ++||.++|||. .+
T Consensus 171 v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGIt-~~ 239 (269)
T cd01568 171 VKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGIT-LE 239 (269)
T ss_pred HHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCCC-HH
Confidence 447777664 223344567899999999999999999651 12444555444433 78999999995 78
Q ss_pred HHHHHHHcCCCEEEechHH
Q 017718 291 DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~ 309 (367)
.+.++...|||++.+|..+
T Consensus 240 ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 240 NIRAYAETGVDVISTGALT 258 (269)
T ss_pred HHHHHHHcCCCEEEEcHHH
Confidence 8999999999999998654
No 198
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.39 E-value=0.015 Score=52.98 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=97.7
Q ss_pred hHHHHHHHHHcCCceeecCCCCC----CHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 017718 90 EYATARAASAAGTIMTLSSWSTS----SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (367)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~~~~----~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (367)
-..+++++.+.|+..+==|+++. .++++.+..|+ +..+.--=.+.+.++++.++|++.++ +|..
T Consensus 18 a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~-----~~vGAGTVl~~e~a~~ai~aGA~Fiv----SP~~--- 85 (201)
T PRK06015 18 AVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEE-----AIVGAGTILNAKQFEDAAKAGSRFIV----SPGT--- 85 (201)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCC-----CEEeeEeCcCHHHHHHHHHcCCCEEE----CCCC---
Confidence 35899999999998764344332 23444444442 22222222234467888889998876 2321
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCc
Q 017718 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAGAA 245 (367)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d 245 (367)
++ +.-...+..++|++ =+++++.++..+.++|++
T Consensus 86 -------------------------------------------~~--~vi~~a~~~~i~~i-PG~~TptEi~~A~~~Ga~ 119 (201)
T PRK06015 86 -------------------------------------------TQ--ELLAAANDSDVPLL-PGAATPSEVMALREEGYT 119 (201)
T ss_pred -------------------------------------------CH--HHHHHHHHcCCCEe-CCCCCHHHHHHHHHCCCC
Confidence 01 01011234578875 488999999999999999
Q ss_pred EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 246 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 246 ~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.|.+.-.+ .-+|+..+ +.++.-++ +++++..|||.. +++...|.+|+.++..|+.+.
T Consensus 120 ~vK~FPa~---~~GG~~yi---kal~~plp-~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 120 VLKFFPAE---QAGGAAFL---KALSSPLA-GTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred EEEECCch---hhCCHHHH---HHHHhhCC-CCcEEecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 99995311 11234433 33433343 799999999966 789999999988777766543
No 199
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.38 E-value=0.046 Score=52.43 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=77.8
Q ss_pred CCHHHHHHHHH-cCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~~~-~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G--GI~~~~dv~kal~lGAd~V~ 304 (367)
.++++|+.+.+ .|+|++.++- ||-+. ....-.++.|.++.+.+ ++|+.+=| ||. .+++.+++.+|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence 58899999886 9999999752 44221 12234688899998887 79999999 886 4779999999999999
Q ss_pred echHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|.+..+... .. ..-.....+.+++.+++.|+.+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654221 00 1223344567778888888888753
No 200
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.38 E-value=0.0012 Score=61.14 Aligned_cols=75 Identities=31% Similarity=0.450 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.+.+-.-.+. ..+.....+.+.++.+.+ .+|+...|||++.+|+.+++.+|||.|.+|+..+
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l 105 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAV 105 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 35688889999999998543221 223445778888888876 7999999999999999999999999999998665
No 201
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.38 E-value=0.00067 Score=63.75 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|++.+.+-. + +.+..+.+.++.+.+ .+||...||||+ +++.+++.+||+.|.+|+..+-
T Consensus 41 ~~~A~~~~~~Ga~~lHvVD-----L--g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIM-----L--GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEE-----C--CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 5789999999999998743 2 444888999998877 799999999998 9999999999999999996653
No 202
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.37 E-value=0.0011 Score=61.87 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=60.7
Q ss_pred CH-HHHHHHHH-cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 232 TA-EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 232 ~~-~~a~~~~~-~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
++ +.|+...+ .|+|.+.+..=-+. ..+.+...+.+.++.+.+ .+||.+.|||+|-+|+.+++.+||+.|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 66788888 69999988542211 124456788999998866 799999999999999999999999999999965
Q ss_pred H
Q 017718 310 V 310 (367)
Q Consensus 310 l 310 (367)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 4
No 203
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.36 E-value=0.024 Score=51.24 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcEEEEcC-CCC-CCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.++... .++|++.+.. +.| +.........+.+.++++... .++|+++.|||.. +++.+++..|||++.+||
T Consensus 118 ~~~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgs 195 (211)
T cd00429 118 VEVLEPYL-DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGS 195 (211)
T ss_pred HHHHHHHH-hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECH
Confidence 34444443 4489887643 222 222222334455566655442 1489999999996 999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
+++-
T Consensus 196 ai~~ 199 (211)
T cd00429 196 ALFG 199 (211)
T ss_pred HHhC
Confidence 8863
No 204
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.36 E-value=0.0023 Score=57.10 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=57.9
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
-+-+.++++.+.+.|+|++.++---.+. .+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++|.+-
T Consensus 101 S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 101 SCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVI 177 (180)
T ss_dssp EESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEES
T ss_pred ecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEE
Confidence 4578899999999999999997522221 112334677788887776 7999999999 7899999999999999988
Q ss_pred hHH
Q 017718 307 RPV 309 (367)
Q Consensus 307 ~~~ 309 (367)
+++
T Consensus 178 ~aI 180 (180)
T PF02581_consen 178 SAI 180 (180)
T ss_dssp HHH
T ss_pred eeC
Confidence 753
No 205
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.36 E-value=0.00094 Score=60.57 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=95.6
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc--ccccccccCccccccchhhHHHh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL--KNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
+=+....+.+...++++.+.+.|++.+-||.++|-.-.--+.++..+ |. +.. ......+ ..+......++++
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~-~~vGAGTV~~~e---~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PD-LLVGAGTVLTAE---QAEAAIAAGAQFI 84 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TT-SEEEEES--SHH---HHHHHHHHT-SEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CC-CeeEEEeccCHH---HHHHHHHcCCCEE
Confidence 33444677888888888889999999999999885322223344444 32 111 0000000 0000001111111
Q ss_pred hhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 205 AGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 205 ~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
. .|.++-+ ......++|++ =+++++.++..+.++|++.+-+.-.+ .-+|+. .++.++.-++ +++++.
T Consensus 85 v---SP~~~~~v~~~~~~~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~---~~GG~~---~ik~l~~p~p-~~~~~p 153 (196)
T PF01081_consen 85 V---SPGFDPEVIEYAREYGIPYI-PGVMTPTEIMQALEAGADIVKLFPAG---ALGGPS---YIKALRGPFP-DLPFMP 153 (196)
T ss_dssp E---ESS--HHHHHHHHHHTSEEE-EEESSHHHHHHHHHTT-SEEEETTTT---TTTHHH---HHHHHHTTTT-T-EEEE
T ss_pred E---CCCCCHHHHHHHHHcCCccc-CCcCCHHHHHHHHHCCCCEEEEecch---hcCcHH---HHHHHhccCC-CCeEEE
Confidence 1 1223222 22234578885 48899999999999999999995321 112343 3444433332 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 283 DGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|||.- +++...+.+|+.+|++|+.+.-
T Consensus 154 tGGV~~-~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 154 TGGVNP-DNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp BSS--T-TTHHHHHTSTTBSEEEESGGGS
T ss_pred cCCCCH-HHHHHHHhCCCEEEEECchhcC
Confidence 999986 7899999999999999996653
No 206
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.32 E-value=0.007 Score=55.54 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=70.0
Q ss_pred HHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 214 WKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
....++..+-..++..+ .+.+++..+.+.|+|+|.++.-..+.- +..+.-++.+.++.+.. ++|+++-||| +.+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 33555555544445443 578999999999999999854333322 22334567788777765 6999999998 468
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+...+..||++|.+-|+++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 899999999999999998875
No 207
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.30 E-value=0.0013 Score=61.70 Aligned_cols=73 Identities=19% Similarity=0.116 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH---HcCCCEEEechH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGASGIFIGRP 308 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal---~lGAd~V~ig~~ 308 (367)
+.++.+.+.|+..|++.+- -|+ ..| +.++.+.++++.. ++|||++|||++.+|+.+.- ..|+++|.+|++
T Consensus 153 ~~~~~~~~~g~~~ii~tdI~~dGt--~~G-~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~A 227 (243)
T TIGR01919 153 VLERLLDSGGCSRVVVTDSKKDGL--SGG-PNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKL 227 (243)
T ss_pred HHHHHHHhCCCCEEEEEecCCccc--CCC-cCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHH
Confidence 5578889999999998652 121 122 5677888887765 79999999999999999864 359999999998
Q ss_pred HHH
Q 017718 309 VVY 311 (367)
Q Consensus 309 ~l~ 311 (367)
+.-
T Consensus 228 l~~ 230 (243)
T TIGR01919 228 LYA 230 (243)
T ss_pred HHc
Confidence 764
No 208
>PRK12376 putative translaldolase; Provisional
Probab=97.30 E-value=0.055 Score=50.51 Aligned_cols=176 Identities=16% Similarity=0.170 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHH----HHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEe
Q 017718 89 GEYATARAASAAGTIMTLSSWST-------SSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~-------~~~e----~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 156 (367)
.|+.-.+.+.+.|..-.++|..+ ...+ ++++..+ ++..+|++ ..|.+.+.+..++..+.+-. ++|-
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~~n-v~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLGEN-VYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhCCC-eEEE
Confidence 46777888888888877876532 1333 3344444 57888986 56666554444554444432 3332
Q ss_pred cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccc-hhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHH
Q 017718 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND-SGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAED 235 (367)
Q Consensus 157 vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~ 235 (367)
+- +. .. .+ .++ . ..+.|++ -++|+-+-.+.+...
T Consensus 91 IP--~T------------------~~-------------~G~~gl-~----------Ai~~L~~-~GI~vn~T~vfs~~Q 125 (236)
T PRK12376 91 IP--IT------------------NT-------------KGESTI-P----------LIKKLSA-DGVKLNVTAIFTIEQ 125 (236)
T ss_pred EC--Cc------------------Cc-------------cchhHH-H----------HHHHHHH-CCCeEEEeeecCHHH
Confidence 21 10 00 00 000 0 1123333 389999999999998
Q ss_pred HHHHHHc----CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 236 ARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~----G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+..+.++ |+++|.. .=||--|.+......+.++.+.+. .++.|++.+ ||+..++.+++.+|||.+-+.-.+
T Consensus 126 a~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~~v 202 (236)
T PRK12376 126 VKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTPDV 202 (236)
T ss_pred HHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCHHH
Confidence 8755555 5888776 334433555555666666655442 256777766 999999999999999999999888
Q ss_pred HHHhh
Q 017718 310 VYSLA 314 (367)
Q Consensus 310 l~~l~ 314 (367)
+..+.
T Consensus 203 ~~~l~ 207 (236)
T PRK12376 203 LKKLP 207 (236)
T ss_pred HHHHH
Confidence 77654
No 209
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.30 E-value=0.0027 Score=60.11 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.|.+..-.+. .....+..+.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~ 107 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL 107 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence 35689999999999998653221 112346788898888765 7999999999999999999999999999998654
No 210
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.30 E-value=0.021 Score=57.62 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=65.6
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCC-C--CCccchHHHHHHHHHHhc-------CCCcEEEec
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ-L--DYVPATIMALEEVVKATQ-------GRIPVFLDG 284 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~-~--~~~~~~~~~l~~i~~~~~-------~~~~via~G 284 (367)
.+|+..+--.++..+ -+.+++.++.+.|+|+|.++----+. . ...+--++.|.++.+.+. ..+||++-|
T Consensus 292 ~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIG 371 (437)
T PRK12290 292 NLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIG 371 (437)
T ss_pred hhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEEC
Confidence 444443322344443 56889999999999999985311111 1 122334566666655442 269999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|| +.+++...+..||++|.+-|.++-
T Consensus 372 GI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 372 GI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred Cc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 99 889999999999999999998873
No 211
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.0056 Score=55.87 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=108.4
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC---CCchh-HHhhhhcCCCCccccccccccccCccc-cccchh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR---LGRRE-ADIKNRFTLPPFLTLKNFQGLDLGKMD-EANDSG 199 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~---~g~r~-~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~ 199 (367)
...|+-. |.-.+++.++-+++..-...+|-+++|. .|.|- +.+|..| |.+.....+.-...+... +....+
T Consensus 4 p~LQvAL--D~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 4 PLLQVAL--DLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred cceEeee--cccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHHc
Confidence 4678754 4444566677777765557888999997 23222 4455544 554443322111100000 000000
Q ss_pred hHHHhhhcc-CccccHH-HHH--hhcCCCEEEEec--CCHHHHHH-HHHcCCcEEEEcCCCCCC--CCCccchHHHHHHH
Q 017718 200 LAAYVAGQI-DRSLSWK-WLQ--TITKLPILVKGV--LTAEDARI-AVQAGAAGIIVSNHGARQ--LDYVPATIMALEEV 270 (367)
Q Consensus 200 ~~~~~~~~~-d~~~~~~-~l~--~~~~~Pv~vK~v--~~~~~a~~-~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i 270 (367)
.+.++.-.. -+.-+.+ .++ +.+++-+.+=+. -++++... +.++|+|.+.+ |-|+. ..+-.+.++.|.++
T Consensus 80 GAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~i 157 (217)
T COG0269 80 GADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKI 157 (217)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHH
Confidence 000000000 0111333 232 345666666554 45666554 44599999999 66653 22333346777777
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 271 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 271 ~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
++.....+.|-..||| +++++-.+...|++.|.+||.+. +........+.+++++.
T Consensus 158 k~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt------~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 158 KKLSDLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAIT------GAKDPAEAARKFKEEID 213 (217)
T ss_pred HHhhccCceEEEecCC-CHHHHHHHhcCCCCEEEECchhc------CCCCHHHHHHHHHHHHh
Confidence 7765434788889998 57999999999999999999775 33333345556666553
No 212
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.0015 Score=59.90 Aligned_cols=88 Identities=26% Similarity=0.320 Sum_probs=64.2
Q ss_pred HHHhhcCCCEEEEec-----CCHH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++..+-++.+|.+ ++.+ ..+.+.++|+|+|--|. | +..+..+.+-+.-+++.+++++.|=++|||
T Consensus 117 ~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTST-G---f~~~gAT~edv~lM~~~vg~~vgvKaSGGI 192 (228)
T COG0274 117 AVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTST-G---FSAGGATVEDVKLMKETVGGRVGVKASGGI 192 (228)
T ss_pred HHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCC-C---CCCCCCCHHHHHHHHHHhccCceeeccCCc
Confidence 455555555778887 2322 25678999999999873 3 224455666666666667778999999999
Q ss_pred CCHHHHHHHHHcCCCEEEech
Q 017718 287 RRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~ 307 (367)
+|.+|+.+++.+||.-++..+
T Consensus 193 rt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 193 RTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred CCHHHHHHHHHHhHHHhcccc
Confidence 999999999999976665443
No 213
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.26 E-value=0.011 Score=54.84 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=69.3
Q ss_pred HHHHhhc-CCCEEEEec-CCHH-HHHHHHHcCCcEEEEcCCCCCC-C---------------------------------
Q 017718 215 KWLQTIT-KLPILVKGV-LTAE-DARIAVQAGAAGIIVSNHGARQ-L--------------------------------- 257 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v-~~~~-~a~~~~~~G~d~i~vs~~gg~~-~--------------------------------- 257 (367)
+++|+.+ ++|+-+|.- .+++ .++.+.++|+|.|.++..++.. +
T Consensus 57 ~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~ 136 (228)
T PTZ00170 57 KSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDT 136 (228)
T ss_pred HHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHcc
Confidence 4777766 788888875 4443 3667788888888885422210 0
Q ss_pred ---------------CC---ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 258 ---------------DY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 258 ---------------~~---~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
++ .+..++-+.++++..+ .+.|.++|||+. +.+.++..+|||.+.+||++.. . +
T Consensus 137 ~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~---a---~ 208 (228)
T PTZ00170 137 DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFK---A---K 208 (228)
T ss_pred chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhC---C---C
Confidence 00 0112333444444332 478999999976 5788888999999999998542 1 1
Q ss_pred HHHHHHHHHHHHHHH
Q 017718 320 GVRRVLEMLREEFEL 334 (367)
Q Consensus 320 ~v~~~i~~l~~el~~ 334 (367)
...+.++.++++++.
T Consensus 209 d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 209 DRKQAIELLRESVQK 223 (228)
T ss_pred CHHHHHHHHHHHHHH
Confidence 233455666665554
No 214
>PRK06801 hypothetical protein; Provisional
Probab=97.24 E-value=0.047 Score=52.47 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=75.1
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCc-cchHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~~~via~GG--I~~~~dv~kal~lGAd~V 303 (367)
.++++|+.+. +.|+|++-++. ||-+ ++. ...++.|.++++.+ ++|+.+-|| |. .+++.+++.+|++.|
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y--~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKY--KGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKI 230 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCC--CCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 4678888877 89999999953 3322 122 24788899998877 799999998 76 578999999999999
Q ss_pred EechHHHHHhhc-------cCh-------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EGE-------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G~-------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
-++|.+..+... ..+ .-.....+.+++.++..|+.+|..
T Consensus 231 Nv~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 231 NFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred EehhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654210 111 112233455667777777777753
No 215
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.19 E-value=0.0033 Score=58.08 Aligned_cols=89 Identities=28% Similarity=0.353 Sum_probs=60.3
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCC--CCCc-cchH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQ--LDYV-PATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~--~~~~-~~~~-~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.++.+++ .+.+.+.++.+.+.|.|.|.+-+. -|+. .... +... +.+..+++. ..++||++.|||++++++..
T Consensus 113 ~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI~~~e~~~~ 190 (223)
T PRK04302 113 LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGISTGEDVKA 190 (223)
T ss_pred CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHH
Confidence 4665544 456678888888999998876432 1221 1111 1122 223333332 23689999999999999999
Q ss_pred HHHcCCCEEEechHHHH
Q 017718 295 ALALGASGIFIGRPVVY 311 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~ 311 (367)
++..|||+|.+|++++.
T Consensus 191 ~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 191 ALELGADGVLLASGVVK 207 (223)
T ss_pred HHcCCCCEEEEehHHhC
Confidence 99999999999999985
No 216
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.16 E-value=0.0021 Score=59.85 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|+|.+.+..=-+. .+.....+.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 46689999999999998642221 14456788888888776 6899999999999999999999999999999654
No 217
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.16 E-value=0.0023 Score=59.45 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|+...+.|++.+.+-.=-+ ...+.+...+.+.++.+.+ .+||.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLda-a~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDA-AKEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHH-HCCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccC-cccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 668888899999998853111 1234456788899998877 69999999999999999999999999999997664
No 218
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.13 E-value=0.018 Score=55.17 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=63.7
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+|+..+ .+|.| .+.+.++++.+.++|+|.|.+.| -+.+.+.++.+.+++++.+.++||| +.+.+.
T Consensus 189 ~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDn----------mspe~l~~av~~~~~~~~leaSGGI-~~~ni~ 256 (290)
T PRK06559 189 QARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDN----------MSLEQIEQAITLIAGRSRIECSGNI-DMTTIS 256 (290)
T ss_pred HHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhcCceEEEEECCC-CHHHHH
Confidence 5555443 34443 56899999999999999999987 2445556666655568899999998 568888
Q ss_pred HHHHcCCCEEEechHHH
Q 017718 294 KALALGASGIFIGRPVV 310 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l 310 (367)
++..+|.|.+.+|.+..
T Consensus 257 ~yA~tGVD~Is~galth 273 (290)
T PRK06559 257 RFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHhcCCCEEEeCcccc
Confidence 89899999999998654
No 219
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.13 E-value=0.0029 Score=58.86 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=51.6
Q ss_pred HcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC-cEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 241 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 241 ~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~-~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
-.|...+.+...++ .+.+...+.+.++++.+ +. ||+..|||++.+++.+++..|||.|.+|+.+.-
T Consensus 152 ~~g~~~vYle~gs~---~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGG---AGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCC---CCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 34666666643222 24456788888888876 56 999999999999999999999999999998864
No 220
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.12 E-value=0.017 Score=53.16 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=85.1
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
..+-+....+.+...++++.+.+.|++.+-||++.|.. .+
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~--------------------------------------~~-- 55 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAA--------------------------------------LE-- 55 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccH--------------------------------------HH--
Confidence 34555667888998999999999999999998876521 00
Q ss_pred hhccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 205 AGQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 205 ~~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
.++.+++.. ++-|.+-.+.+.++++.+.++|+++++.-+ ...+.+..+.+ . .+|++
T Consensus 56 --------~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~----------~~~~vi~~a~~-~--~i~~i-- 112 (212)
T PRK05718 56 --------AIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG----------LTPPLLKAAQE-G--PIPLI-- 112 (212)
T ss_pred --------HHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--
Confidence 122455444 355777777999999999999999997632 12245544433 2 45554
Q ss_pred cCCCCHHHHHHHHHcCCCEEEe
Q 017718 284 GGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 284 GGI~~~~dv~kal~lGAd~V~i 305 (367)
=|+.|+.++..++.+||+.|-+
T Consensus 113 PG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 113 PGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred CCCCCHHHHHHHHHCCCCEEEE
Confidence 4799999999999999999887
No 221
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.09 E-value=0.051 Score=51.13 Aligned_cols=200 Identities=21% Similarity=0.267 Sum_probs=107.0
Q ss_pred ccceeEcCeeeccceEe-CcccchhccCChhhHHHHHHHHHcCCceeec-CCCCCCHHHHHhhCCCceEEEEeecCCHHH
Q 017718 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~i-APm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~ 137 (367)
++.+.+.+.....+.+| .|.+.- ..+--..+|+.++++|+.+..+ .+... . .|+.|| +-..+-
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~~kpR-------t--s~~sf~---G~G~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGAYKPR-------T--SAASFQ---GLGLQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecccCCC-------C--CCcccC---CCCHHH
Confidence 34444555555545444 443322 2233358999999999998874 33211 1 345565 333455
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKW 216 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 216 (367)
...+.+.+++.|...+- ++-.+ +.-+....+ .+ -+. -+.... +.+.
T Consensus 68 l~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-vd-ilq--------------------------Igs~~~~n~~L 114 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-LD-VIQ--------------------------VGARNMQNFEF 114 (250)
T ss_pred HHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-CC-EEE--------------------------ECcccccCHHH
Confidence 66677777788877553 22211 111111000 00 000 000111 2222
Q ss_pred HH--hhcCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCc---cchHHHHHHHHHHhcCCCcEEEe--
Q 017718 217 LQ--TITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLD-- 283 (367)
Q Consensus 217 l~--~~~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~~~via~-- 283 (367)
|+ ..+++||++|.- .++++ ++.+.+.|..-|++--.|=++.... ...+..++.+++.. .+|||++
T Consensus 115 L~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~S 192 (250)
T PRK13397 115 LKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVS 192 (250)
T ss_pred HHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCC
Confidence 22 235899999987 45555 5667788886666642232222221 33556677776655 6899996
Q ss_pred --cCCCC--HHHHHHHHHcCCCEEEechHH
Q 017718 284 --GGVRR--GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 284 --GGI~~--~~dv~kal~lGAd~V~ig~~~ 309 (367)
+|.|. ..-...|+++|||+++|-+-+
T Consensus 193 Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 193 HSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133567788999999998744
No 222
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.08 E-value=0.0029 Score=58.32 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=54.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|..+...|...+.+... |. ....+.+..+++.+. ++|++..|||++.+++.+++.+|||.|.+|+.+.-
T Consensus 141 A~aae~~g~~ivyLe~S-G~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLEYS-GA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeCCC-CC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 67788889888888622 21 245677777777542 68999999999999999999999999999998763
No 223
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.05 E-value=0.027 Score=54.17 Aligned_cols=85 Identities=24% Similarity=0.220 Sum_probs=64.0
Q ss_pred HHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
|+.+|+.. ..||. -.+-+.++++.+.++|+|.|.+.| -+.+.+.++.+..+.++.+.++||| +.+.+
T Consensus 199 v~~~r~~~~~~kIe-VEv~sleea~ea~~~gaDiI~LDn----------~s~e~~~~av~~~~~~~~ieaSGGI-~~~ni 266 (296)
T PRK09016 199 VEKAFWLHPDVPVE-VEVENLDELDQALKAGADIIMLDN----------FTTEQMREAVKRTNGRALLEVSGNV-TLETL 266 (296)
T ss_pred HHHHHHhCCCCCEE-EEeCCHHHHHHHHHcCCCEEEeCC----------CChHHHHHHHHhhcCCeEEEEECCC-CHHHH
Confidence 33555443 24543 366889999999999999999977 1235566666655568899999998 46788
Q ss_pred HHHHHcCCCEEEechHHH
Q 017718 293 FKALALGASGIFIGRPVV 310 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l 310 (367)
.++-.+|+|.+.+|.+..
T Consensus 267 ~~yA~tGVD~Is~galth 284 (296)
T PRK09016 267 REFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHhcCCCEEEeCcccc
Confidence 888899999999998553
No 224
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.04 E-value=0.035 Score=55.59 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=87.5
Q ss_pred CHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCc
Q 017718 113 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (367)
Q Consensus 113 ~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~ 191 (367)
.++++.+..+ .+....|-. .|.+.+. ++.+.++|++.+.++.-.+..
T Consensus 216 iVk~Lr~~~~~~~I~~DLK~-~Di~~~v--v~~~a~aGAD~vTVH~ea~~~----------------------------- 263 (391)
T PRK13307 216 VISKIREVRPDAFIVADLKT-LDTGNLE--ARMAADATADAVVISGLAPIS----------------------------- 263 (391)
T ss_pred HHHHHHHhCCCCeEEEEecc-cChhhHH--HHHHHhcCCCEEEEeccCCHH-----------------------------
Confidence 3456665544 345666653 4555442 777888999988776532110
Q ss_pred cccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec--CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHH
Q 017718 192 MDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV--LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALE 268 (367)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v--~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~ 268 (367)
...+ ..+.+|+ .++-+.+-.. .++ +.++.+ ..++|.|.+. .+....+..+.++.+.
T Consensus 264 -------ti~~----------ai~~akk-~GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllh--t~vdp~~~~~~~~kI~ 322 (391)
T PRK13307 264 -------TIEK----------AIHEAQK-TGIYSILDMLNVEDPVKLLESL-KVKPDVVELH--RGIDEEGTEHAWGNIK 322 (391)
T ss_pred -------HHHH----------HHHHHHH-cCCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEc--cccCCCcccchHHHHH
Confidence 0000 1113333 4555555322 233 344444 7899999884 2221112345667777
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 269 ~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
++++. ..+++|.++|||. .+++.+++.+|||.+.+||.+.
T Consensus 323 ~ikk~-~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 323 EIKKA-GGKILVAVAGGVR-VENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred HHHHh-CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 77665 3478999999999 7889899999999999999854
No 225
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.02 E-value=0.0037 Score=57.10 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=52.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
|..+...|++.|.+-...|. ..+...+.+.++++.+ ++|++.-|||++.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 56677889999988542222 2234577888888877 799999999999999999999999999987
No 226
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.00 E-value=0.04 Score=52.94 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=62.8
Q ss_pred cHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH---hcCCCcEEEecCCCC
Q 017718 213 SWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVRR 288 (367)
Q Consensus 213 ~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~~~via~GGI~~ 288 (367)
.|+.+|+.. ..|+.| .+-+.+++..+.++|+|.|.+.| + +.+.++++.+. ...++.+.++||| +
T Consensus 189 ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDn-----m-----~~e~vk~av~~~~~~~~~v~ieaSGGI-~ 256 (289)
T PRK07896 189 ALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDN-----F-----PVWQTQEAVQRRDARAPTVLLESSGGL-T 256 (289)
T ss_pred HHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCC-----C-----CHHHHHHHHHHHhccCCCEEEEEECCC-C
Confidence 344666544 355443 67899999999999999999986 1 13333333332 3457889999998 5
Q ss_pred HHHHHHHHHcCCCEEEechHHH
Q 017718 289 GTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.+.++..+|+|.+.+|.+..
T Consensus 257 ~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred HHHHHHHHhcCCCEEEeChhhc
Confidence 6888899999999999998664
No 227
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.99 E-value=0.029 Score=51.54 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=95.0
Q ss_pred hHHHHHHHHHcCCceeecCCCCC----CHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 017718 90 EYATARAASAAGTIMTLSSWSTS----SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (367)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~~~~----~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (367)
-..+++++.+.|+..+==++.+. .++++.+..|+ +..+.+--.+.+.++++.++|++.++. |..
T Consensus 29 a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~-----~~IGAGTVl~~~~a~~a~~aGA~Fivs----P~~--- 96 (212)
T PRK05718 29 AVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPE-----ALIGAGTVLNPEQLAQAIEAGAQFIVS----PGL--- 96 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCC-----CEEEEeeccCHHHHHHHHHcCCCEEEC----CCC---
Confidence 35789999999988662223322 34455555542 222333333446678888899988752 210
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCc
Q 017718 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAGAA 245 (367)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d 245 (367)
++. .+++.+ ..++|++ =+++++.++..+.++|++
T Consensus 97 -------------------------------------------~~~-vi~~a~-~~~i~~i-PG~~TptEi~~a~~~Ga~ 130 (212)
T PRK05718 97 -------------------------------------------TPP-LLKAAQ-EGPIPLI-PGVSTPSELMLGMELGLR 130 (212)
T ss_pred -------------------------------------------CHH-HHHHHH-HcCCCEe-CCCCCHHHHHHHHHCCCC
Confidence 000 111222 2577774 478899889999999999
Q ss_pred EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 246 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 246 ~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.+.-.+ .. +|+ ..++.++.-++ .++++..|||.- +++.+.+.+|+..++. +.+|+
T Consensus 131 ~vKlFPa~--~~-gg~---~~lk~l~~p~p-~~~~~ptGGV~~-~ni~~~l~ag~v~~vg-gs~L~ 187 (212)
T PRK05718 131 TFKFFPAE--AS-GGV---KMLKALAGPFP-DVRFCPTGGISP-ANYRDYLALPNVLCIG-GSWMV 187 (212)
T ss_pred EEEEccch--hc-cCH---HHHHHHhccCC-CCeEEEeCCCCH-HHHHHHHhCCCEEEEE-ChHhC
Confidence 99994311 11 233 34444443343 699999999976 8899999999555544 55554
No 228
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.98 E-value=0.008 Score=56.04 Aligned_cols=74 Identities=22% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.+.+-.-.+. .+.....+.+.++.+.. -.|+...|||++-+|+.+++.+||+-|.+|+..+
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a--~~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~ 106 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAA--EGVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVF 106 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc--CCCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhh
Confidence 36688889999999998653332 13455678888887643 2499999999999999999999999999999664
No 229
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=96.98 E-value=0.17 Score=47.24 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHHHHH----h-hCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEe
Q 017718 89 GEYATARAASAAGTIMTLSSWST-------SSVEEVA----S-TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~-------~~~e~i~----~-~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 156 (367)
.|+.-.+.+.+.|..-.++|..+ ...+++. . ..+++..+|++ ..|.+.+.+..++..+.+- .++|-
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~~-nv~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWGN-NVNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcCC-CeEEE
Confidence 46777888888888878876522 1233332 2 22367889997 6676666555555555553 34442
Q ss_pred cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHHHHhhcCCCEEEEecCCHHH
Q 017718 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKWLQTITKLPILVKGVLTAED 235 (367)
Q Consensus 157 vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~l~~~~~~Pv~vK~v~~~~~ 235 (367)
+ |+. .. .+ ...+ ..+.|++ -++++-+-.+.+...
T Consensus 91 I--P~T------------------~~-------------~G-----------~~~l~ai~~L~~-~GI~vn~T~vfs~~Q 125 (236)
T TIGR02134 91 I--PVT------------------NT-------------KG-----------ESTGPLIQKLSA-DGITLNVTALTTIEQ 125 (236)
T ss_pred E--CCc------------------Cc-------------cc-----------chHHHHHHHHHH-CCCcEEeehcCCHHH
Confidence 2 210 00 00 0000 1123433 388999988999988
Q ss_pred HHHH---HHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 236 ARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~---~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+..+ .++| +++|.. .-||--|.|......+.++.+.+. .+..|++.+ +|+..++.++..+|||.+-+.-.+
T Consensus 126 a~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~~v 202 (236)
T TIGR02134 126 VEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAHDI 202 (236)
T ss_pred HHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCHHH
Confidence 8864 4589 588776 335533555555555555554432 367888876 999999999999999999999888
Q ss_pred HHHhh
Q 017718 310 VYSLA 314 (367)
Q Consensus 310 l~~l~ 314 (367)
+..+.
T Consensus 203 ~~~l~ 207 (236)
T TIGR02134 203 LAKLP 207 (236)
T ss_pred HHHHH
Confidence 77664
No 230
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.97 E-value=0.0086 Score=57.25 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=65.5
Q ss_pred HHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 214 WKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 214 ~~~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
++.+|+..+ .+|.| .+.+.++++.+.++|+|.|.+.| -+.+.+.++.+.++.+.++.++||| +.+.
T Consensus 184 i~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn----------~s~e~l~~av~~~~~~~~leaSGGI-~~~n 251 (281)
T PRK06106 184 IRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDN----------MTPDTLREAVAIVAGRAITEASGRI-TPET 251 (281)
T ss_pred HHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCC----------CCHHHHHHHHHHhCCCceEEEECCC-CHHH
Confidence 335666543 44444 56899999999999999999987 2345666666666667889999999 4678
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.++-.+|.|.+.+|.+..
T Consensus 252 i~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 252 APAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHhcCCCEEEeChhhc
Confidence 8888899999999998654
No 231
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=96.94 E-value=0.0091 Score=52.92 Aligned_cols=86 Identities=23% Similarity=0.244 Sum_probs=60.4
Q ss_pred HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHH---HhcCCCcEEEecCCCCH
Q 017718 214 WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~---~~~~~~~via~GGI~~~ 289 (367)
|+.+++..+ .+-+.=.+.+.++++.+.++|+|.|.+.|- .+ +.+.++.+ ....++.|.++||| +.
T Consensus 70 v~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~---~~~~~~v~~l~~~~~~v~ie~SGGI-~~ 138 (169)
T PF01729_consen 70 VKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SP---EDLKEAVEELRELNPRVKIEASGGI-TL 138 (169)
T ss_dssp HHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CH---HHHHHHHHHHHHHTTTSEEEEESSS-ST
T ss_pred HHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CH---HHHHHHHHHHhhcCCcEEEEEECCC-CH
Confidence 336666553 332344678899999999999999999872 23 33333333 44557999999999 45
Q ss_pred HHHHHHHHcCCCEEEechHHH
Q 017718 290 TDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+.++...|+|.+.+|+...
T Consensus 139 ~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 139 ENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp TTHHHHHHTT-SEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEcChhhc
Confidence 778889999999999998654
No 232
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.94 E-value=0.0051 Score=57.67 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.|+...+.|+|.+.+-.--+ ...+.+...+.+.++.+.+ .||...|||++-+|+.+++.+||+-|.+||..+
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~-a~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSK-AIENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCC-cccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 568888999999998754211 1224456788899988765 599999999999999999999999999999553
No 233
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.93 E-value=0.0047 Score=57.57 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.++.+.+.|+..|++.+- -|+. .| +.++.+..+.+. ..|+|++|||++.+|+.++..+|+++|.+|+++.-
T Consensus 150 e~~~~l~~~g~~~ii~tdI~~dGt~--~G-~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 150 DGIKKVNELELLGIIFTYISNEGTT--KG-IDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HHHHHHHhcCCCEEEEecccccccC--cC-cCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 5678899999999888642 1211 22 456667766543 34599999999999999999999999999998753
No 234
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.015 Score=53.09 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=101.3
Q ss_pred ecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccc--cccccccCccccccchhhHHHhhhcc
Q 017718 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQGLDLGKMDEANDSGLAAYVAGQI 208 (367)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (367)
...+.+....+++...+.|+++|-||+.+|....--+.+++.+ |. .... .+...+ .. .....+.++++-
T Consensus 20 r~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~--p~-~lIGAGTVL~~~--q~-~~a~~aGa~fiV--- 90 (211)
T COG0800 20 RGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEF--PE-ALIGAGTVLNPE--QA-RQAIAAGAQFIV--- 90 (211)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhC--cc-cEEccccccCHH--HH-HHHHHcCCCEEE---
Confidence 3678888889999999999999999999999766666666655 31 1110 000000 00 000000011110
Q ss_pred CccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 209 DRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 209 d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.|.++-+ ......++|++ =+++++-++..+.++|++.+-+.-.. ..+++.....+. ..-.+++++..|||
T Consensus 91 sP~~~~ev~~~a~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~---~~Gg~~~~ka~~----gP~~~v~~~pTGGV 162 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPYI-PGVATPTEIMAALELGASALKFFPAE---VVGGPAMLKALA----GPFPQVRFCPTGGV 162 (211)
T ss_pred CCCCCHHHHHHHHhCCCccc-CCCCCHHHHHHHHHcChhheeecCcc---ccCcHHHHHHHc----CCCCCCeEeecCCC
Confidence 2333333 33344678885 58899999999999999999985321 112332222221 11136899999999
Q ss_pred CCHHHHHHHHHcCCCEEEechHHH
Q 017718 287 RRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
..- .+...+++|+.+|++|+-+.
T Consensus 163 s~~-N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 163 SLD-NAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred CHH-HHHHHHhCCceEEecCcccc
Confidence 764 89999999999998888554
No 235
>PRK08185 hypothetical protein; Provisional
Probab=96.87 E-value=0.45 Score=45.70 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHc-CCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIAVQA-GAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~~~~-G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ 304 (367)
.++++|+...+. |+|++.++. ||-+.-...| -.++.|.+|++.+ ++|+++=||+..+ +++.|++.+|..-|=
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 578999888876 999999964 4432211111 2588999998877 7999999999655 556678899999999
Q ss_pred echHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|-+..+... ..+ .-.....+.+++..+..|+.+|..
T Consensus 227 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 227 ISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred eChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977554210 111 113334456777777888888854
No 236
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.85 E-value=0.0036 Score=58.21 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=33.8
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 277 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
++|||++|||++.+|+.++..+|+++|.+|++|.++
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 799999999999999999999999999999998763
No 237
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=96.84 E-value=0.01 Score=53.79 Aligned_cols=96 Identities=26% Similarity=0.479 Sum_probs=67.9
Q ss_pred cHH-HHHh-hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC---------------------CCC---------c
Q 017718 213 SWK-WLQT-ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LDY---------V 260 (367)
Q Consensus 213 ~~~-~l~~-~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---------------------~~~---------~ 260 (367)
+|+ .+.+ ++++|++ .++-+..+|.+-+..|+.-|..-+.-|+. .+. -
T Consensus 114 D~~hhI~KhnFkvPFv-CG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i 192 (296)
T KOG1606|consen 114 DWDHHIEKHNFKVPFV-CGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEI 192 (296)
T ss_pred cccchhhhhcCcCcee-eccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 676 5543 4588984 57777888888888899988887654431 010 0
Q ss_pred cchHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 261 PATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 261 ~~~~~~l~~i~~~~~~~~~v--ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
..+.+++.+..+. +++|| ++.|||.++.|++-.+.||+|+|.+|+.++.
T Consensus 193 ~aP~dLv~~t~q~--GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 193 AAPYDLVKQTKQL--GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred cCcHHHHHHHHHc--CCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 1234455555442 36776 6899999999999999999999999996654
No 238
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=96.84 E-value=0.034 Score=50.78 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCcEEEEcC-C-CCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.++. ...++|+|.+.. + |++.....+...+.+.++++.... ..+|.++|||+. +++.+++..|+|.|.+||
T Consensus 122 ~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 122 LEPLED-VLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGS 199 (220)
T ss_pred HHHHHH-HHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEECh
Confidence 344443 344689877643 2 222222223344555555554422 144678999999 799999999999999999
Q ss_pred HHH
Q 017718 308 PVV 310 (367)
Q Consensus 308 ~~l 310 (367)
+++
T Consensus 200 ai~ 202 (220)
T PRK05581 200 AVF 202 (220)
T ss_pred hhh
Confidence 876
No 239
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.83 E-value=0.048 Score=52.40 Aligned_cols=76 Identities=28% Similarity=0.364 Sum_probs=59.5
Q ss_pred CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 223 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 223 ~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
.+|.| .+-+.++++.+.++|+|.|.+.| -+.+.+.++.+.+++++.+.++||| |.+.+.++..+|.|.
T Consensus 206 ~kIeV-Evetleea~eA~~aGaDiImLDn----------mspe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~ 273 (294)
T PRK06978 206 VPVQI-EVETLAQLETALAHGAQSVLLDN----------FTLDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDR 273 (294)
T ss_pred CcEEE-EcCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCE
Confidence 34433 56789999999999999999987 2345555565555567889999998 578888888899999
Q ss_pred EEechHHH
Q 017718 303 IFIGRPVV 310 (367)
Q Consensus 303 V~ig~~~l 310 (367)
+.+|.+..
T Consensus 274 IS~galth 281 (294)
T PRK06978 274 ISIGALTK 281 (294)
T ss_pred EEeCcccc
Confidence 99998553
No 240
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=96.81 E-value=0.045 Score=52.34 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=59.5
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~d 291 (367)
.+|+.. ..+|.| .+.+.++++.+.++|+|.|.+.| -+.+.+.++.+.+ ..++.|.++||| +.+.
T Consensus 181 ~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn----------~~~e~l~~~v~~l~~~~~~~~leasGGI-~~~n 248 (277)
T TIGR01334 181 RLKQTAPERKITV-EADTIEQALTVLQASPDILQLDK----------FTPQQLHHLHERLKFFDHIPTLAAAGGI-NPEN 248 (277)
T ss_pred HHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECC----------CCHHHHHHHHHHHhccCCCEEEEEECCC-CHHH
Confidence 555544 244433 56799999999999999999975 1222333333333 347889999998 5788
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
+.++..+|+|.+.+|.++
T Consensus 249 i~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 249 IADYIEAGIDLFITSAPY 266 (277)
T ss_pred HHHHHhcCCCEEEeCcce
Confidence 999999999999999863
No 241
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=96.80 E-value=0.061 Score=51.59 Aligned_cols=148 Identities=14% Similarity=0.039 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHh---hhhcCCCCccccccccccccCccccccchhhHHHhhhccC-ccc
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADI---KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID-RSL 212 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~ 212 (367)
.+.++++.+++.+.+.-++.--...+|.|.-+. +.|...+.++.... .+ + ---.|+.-... ..+
T Consensus 109 ~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd--~v----L------ikdNHi~~~g~~~~i 176 (284)
T PRK06096 109 YLAQMLALLRERYPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAE--TI----L------LFANHRHFLHDPQDW 176 (284)
T ss_pred HHHHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcch--hh----h------hHHHHHHHhCCcccH
Confidence 456777777777777777766666677776222 22322222111100 00 0 00011111000 011
Q ss_pred --cHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCC
Q 017718 213 --SWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 286 (367)
Q Consensus 213 --~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI 286 (367)
..+.+|+..+ .+| .=.+.+.++++.+.++|+|.|.+.| . +.+.+.++.+.+ ..++.+-++|||
T Consensus 177 ~~av~~~r~~~~~~kI-eVEv~tleqa~ea~~agaDiI~LDn-------~---~~e~l~~av~~~~~~~~~~~leaSGGI 245 (284)
T PRK06096 177 SGAINQLRRHAPEKKI-VVEADTPKEAIAALRAQPDVLQLDK-------F---SPQQATEIAQIAPSLAPHCTLSLAGGI 245 (284)
T ss_pred HHHHHHHHHhCCCCCE-EEECCCHHHHHHHHHcCCCEEEECC-------C---CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 1225555443 343 4466899999999999999999976 1 233344444433 247889999998
Q ss_pred CCHHHHHHHHHcCCCEEEechH
Q 017718 287 RRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~ 308 (367)
|.+.+.++..+|+|.+.+|.+
T Consensus 246 -~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 -NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred -CHHHHHHHHhcCCCEEEECcc
Confidence 578899899999999998875
No 242
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.77 E-value=0.012 Score=66.76 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via-~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+.|..+++.|+..|++|..+-..-....|.+-++..+.+.+ +.++.||+ +|.+++.-|++..+.+||++|.-.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 34778899999999999865321112334444444444433 44788888 8999999999999999999995443
Q ss_pred HHH--HHhhccC------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 308 PVV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 308 ~~l--~~l~~~G------~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
++- ..+...| .+.+.+++..+.++|...|..+|.++++.-++.-+.
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 331 1111223 356889999999999999999999999988876553
No 243
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.77 E-value=0.0069 Score=57.25 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=58.0
Q ss_pred CHHH-HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC--CCEEEechH
Q 017718 232 TAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRP 308 (367)
Q Consensus 232 ~~~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG--Ad~V~ig~~ 308 (367)
++.+ +....+.|+..|++..-..-.. ..-+.++.+.++.+.+ ++|||++|||++-+|+.+...+| ...|.+|++
T Consensus 164 ~~~e~~~~~~~~g~~eii~TdI~rDGt-l~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkA 240 (262)
T PLN02446 164 AVDEETLEFLAAYCDEFLVHGVDVEGK-RLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSA 240 (262)
T ss_pred CHHHHHHHHHHhCCCEEEEEEEcCCCc-ccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEee
Confidence 4455 6888999999999864211001 1224678888888876 89999999999999999999884 688999998
Q ss_pred HH
Q 017718 309 VV 310 (367)
Q Consensus 309 ~l 310 (367)
+.
T Consensus 241 l~ 242 (262)
T PLN02446 241 LD 242 (262)
T ss_pred HH
Confidence 74
No 244
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.77 E-value=0.0085 Score=56.24 Aligned_cols=73 Identities=29% Similarity=0.202 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.++...+.|++.+.+..--+. .+.+...+.+.++.+.+ .+|+.+.|||+|.+|+.+++.+||+-|.+||..+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 4466678889888877532111 14456788899998877 6899999999999999999999999999999654
No 245
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.76 E-value=0.0089 Score=55.23 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=50.9
Q ss_pred cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 242 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 242 ~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|...+.+-..||. +.+...+.+..+++.++ ++||+..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 57777777432332 33445777888877653 69999999999999999999999999999997753
No 246
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.73 E-value=0.28 Score=48.75 Aligned_cols=205 Identities=22% Similarity=0.284 Sum_probs=110.3
Q ss_pred CCCCCccceeEcCeeec--cc-eEeCcccchhccCChhhHHHHHHHHHcCCceeecC-CCCCCHHHHHhhCCCceEEEEe
Q 017718 55 DVSKIDMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTSSVEEVASTGPGIRFFQLY 130 (367)
Q Consensus 55 ~~~~vd~st~i~g~~l~--~P-i~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~-~~~~~~e~i~~~~~~~~~~QLy 130 (367)
+...-|+.+.+.+..+. .| +++.|... -..+.-..+|+.+++.|+.+.... +.. .. .|+.||
T Consensus 99 ~~~~~~~~~~~~~~~~g~~~~~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~~kp-------Rt--sp~~f~-- 164 (360)
T PRK12595 99 KKKPEDTIVDVKGEVIGDGNQSFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGAFKP-------RT--SPYDFQ-- 164 (360)
T ss_pred ccCCCCCEEEECCEEecCCCeeeEEecccc---cCHHHHHHHHHHHHHcCCcEEEccccCC-------CC--CCcccc--
Confidence 33344555555554442 34 45556322 223334578888999998887632 111 11 344555
Q ss_pred ecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCc
Q 017718 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (367)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (367)
+-..+....+.+.+++.|...+. ++-.+ +.-+....+ .+- +. -+..
T Consensus 165 -g~~~e~l~~L~~~~~~~Gl~~~t-~v~d~----~~~~~l~~~-vd~-lk--------------------------I~s~ 210 (360)
T PRK12595 165 -GLGVEGLKILKQVADEYGLAVIS-EIVNP----ADVEVALDY-VDV-IQ--------------------------IGAR 210 (360)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHHh-CCe-EE--------------------------ECcc
Confidence 33446666677778888877653 22111 111111111 000 00 0001
Q ss_pred cc-cHHHHH--hhcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCC---CccchHHHHHHHHHHhcCCC
Q 017718 211 SL-SWKWLQ--TITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 211 ~~-~~~~l~--~~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~~ 278 (367)
.. ++..|+ ..+++||++|..+ +.++ ++.+.+.|.+-|++--+|=+... .....+..++.+++.. .+
T Consensus 211 ~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~ 288 (360)
T PRK12595 211 NMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HL 288 (360)
T ss_pred cccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CC
Confidence 11 233222 2358999999875 6665 45666788866666433433222 1123667788777755 68
Q ss_pred cEEEecCCCCH----H--HHHHHHHcCCCEEEechHH
Q 017718 279 PVFLDGGVRRG----T--DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 279 ~via~GGI~~~----~--dv~kal~lGAd~V~ig~~~ 309 (367)
||+.|.+=..| . -...|+++|||+++|-+-+
T Consensus 289 PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 289 PVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 99996442222 2 3445788999999999866
No 247
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.73 E-value=0.0073 Score=57.08 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|++.+.|-.=+| +.+...+.+.+|++ + .+||-.-||||+ +++.++|.+||+-|.|||..+-
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4779999999999998754222 23456788888887 6 599999999996 9999999999999999997653
No 248
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.73 E-value=0.023 Score=54.07 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=59.6
Q ss_pred cHHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+++.+++.+++||+-|.. ....+|+.+.++|+|.|.-|..- .|..+.+..++... ++|+ ..|++|-++
T Consensus 58 ~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpf--mad~~~l~E 126 (287)
T TIGR00343 58 MIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPF--VCGARDLGE 126 (287)
T ss_pred HHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCE--EccCCCHHH
Confidence 456888999999999876 44789999999999999643211 12344444444433 4444 457999999
Q ss_pred HHHHHHcCCCEEE
Q 017718 292 VFKALALGASGIF 304 (367)
Q Consensus 292 v~kal~lGAd~V~ 304 (367)
++.++.+|||.|.
T Consensus 127 Alrai~~GadmI~ 139 (287)
T TIGR00343 127 ALRRINEGAAMIR 139 (287)
T ss_pred HHHHHHCCCCEEe
Confidence 9999999999773
No 249
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.074 Score=48.87 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..|.....+.+++.+++|++.+ ++|. +-..| .+|+. + ..
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DV---------MDghF-------VPNiT---f--------------------Gp 50 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDV---------MDGHF-------VPNIT---F--------------------GP 50 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEec---------cCCCc-------CCCcc---c--------------------CH
Confidence 5677888899999999999976 4452 00111 11110 0 00
Q ss_pred ccHHHHHhhcCCCEEEEec-CCHHH-HHHHHHcCCcEEEEcCC---------------C---------CCC---------
Q 017718 212 LSWKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNH---------------G---------ARQ--------- 256 (367)
Q Consensus 212 ~~~~~l~~~~~~Pv~vK~v-~~~~~-a~~~~~~G~d~i~vs~~---------------g---------g~~--------- 256 (367)
...+++|+.++.|+=+=.- .+++. .....++|+|.|.++-. | +|.
T Consensus 51 ~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~ 130 (220)
T COG0036 51 PVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD 130 (220)
T ss_pred HHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh
Confidence 0123677766677655543 34433 66777888888887431 0 010
Q ss_pred -C-----------CCc----cchHHHHHHHHHHhcC--CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh
Q 017718 257 -L-----------DYV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 318 (367)
Q Consensus 257 -~-----------~~~----~~~~~~l~~i~~~~~~--~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~ 318 (367)
. .+| +..++-++++++.... ++-|-+||||.. +.+-++.++|||.+..|| .+|. +.
T Consensus 131 ~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AGad~~VaGS-alF~----~~ 204 (220)
T COG0036 131 DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAGADVFVAGS-ALFG----AD 204 (220)
T ss_pred hCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcCCCEEEEEE-EEeC----Cc
Confidence 0 122 3455666666665542 567889999964 557777779999999999 5553 22
Q ss_pred HHHHHHHHHHHHHH
Q 017718 319 KGVRRVLEMLREEF 332 (367)
Q Consensus 319 ~~v~~~i~~l~~el 332 (367)
+ ....++.++.++
T Consensus 205 d-~~~~i~~~~~~~ 217 (220)
T COG0036 205 D-YKATIRELRGEL 217 (220)
T ss_pred c-HHHHHHHHHHHh
Confidence 2 444555555543
No 250
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.71 E-value=0.016 Score=55.39 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via-~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
++|..+++.|+..|++|..+-..-....+.+-++..+.+++ +.++.||+ +|-+|+.-|++-.+..|||+|.=.-
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 45788999999999998755221111233444444444443 34677777 7889999999999999999985322
Q ss_pred HH--HHHhhccC-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 308 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 308 ~~--l~~l~~~G-------~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
+| +..+...| ++.+.+++..+.+.|...|..+|.+.++.-++.-+.
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 22 22222223 357889999999999999999999999988776553
No 251
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.66 E-value=0.029 Score=58.10 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=65.1
Q ss_pred HHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEcCCCCCC-C-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
..|+..+-..++.. +.+.+++..+.+.|+|+|.++--..+. . +..+.-++.+.++.+.. ++||++-|||. .+++
T Consensus 382 ~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~~ 458 (502)
T PLN02898 382 LARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASNA 458 (502)
T ss_pred HHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHHH
Confidence 44544432233333 467899999999999999875321111 1 11122467777776654 79999999995 8999
Q ss_pred HHHHHcCCC---EEEechHHHH
Q 017718 293 FKALALGAS---GIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~lGAd---~V~ig~~~l~ 311 (367)
.+.+.+||+ +|.+++.++-
T Consensus 459 ~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 459 ASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHcCCCcCceEEEEeHHhc
Confidence 999999999 9999998863
No 252
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.65 E-value=0.041 Score=53.09 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHcCCcEEEEc--C-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG--I~~~~dv~kal~lGAd~V~i 305 (367)
.++++|+.+.+.|+|+|-++ + ||-+.-....-.++.|.+|.+.+. ++|+++-|| |. .+++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 57899999999999999998 3 564421122356888999988772 499999998 64 47899999999999999
Q ss_pred chHHHH
Q 017718 306 GRPVVY 311 (367)
Q Consensus 306 g~~~l~ 311 (367)
+|.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
No 253
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.65 E-value=0.33 Score=46.55 Aligned_cols=107 Identities=13% Similarity=0.220 Sum_probs=75.7
Q ss_pred CCHHHHHHH-HHcCCcEEEEcC---CCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~-~~~G~d~i~vs~---~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ 304 (367)
.++++|... .+.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|..-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 577877665 479999999875 5543 2332 578999998877 8999998887666 677789999999999
Q ss_pred echHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|-+..+... ..+ .-.....+.+++..+..|+.+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543210 010 113344466777788888888854
No 254
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.63 E-value=0.09 Score=49.59 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=93.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceeecCC---------CCC--------C----H---HHHHhhCC-CceE
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---------STS--------S----V---EEVASTGP-GIRF 126 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~---------~~~--------~----~---e~i~~~~~-~~~~ 126 (367)
.||+-+..|. + -.|+.+.+.|+.+.+.-. ++. + . +||....+ .|.+
T Consensus 15 ~pIig~gaGt-G--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAGT-G--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEESS-H--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeecc-c--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 4766665432 2 489999999999886311 111 0 1 23333333 5778
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (367)
+-+......-.+...+++.++.||..+. |.|..|.=.-..|+ .+..
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~---NfPTvgliDG~fR~-------------------------------~LEe 131 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ---NFPTVGLIDGQFRQ-------------------------------NLEE 131 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE---E-S-GGG--HHHHH-------------------------------HHHH
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE---ECCcceeeccHHHH-------------------------------HHHh
Confidence 8776433334567889999999999875 44543211100110 0000
Q ss_pred ccCccc--cHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcC---CCCC-CCCCccc---hHHHHHHHHHHh--
Q 017718 207 QIDRSL--SWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPA---TIMALEEVVKAT-- 274 (367)
Q Consensus 207 ~~d~~~--~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~---~gg~-~~~~~~~---~~~~l~~i~~~~-- 274 (367)
..-.+ ..+.++... .-=+.+--+.+.++|+...++|||.|+++- .||. ......+ ..+.+.++.++.
T Consensus 132 -~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~ 210 (268)
T PF09370_consen 132 -TGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARA 210 (268)
T ss_dssp -TT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHC
T ss_pred -cCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHH
Confidence 00111 223444433 223444456799999999999999999842 1222 1122222 223344444433
Q ss_pred -cCCCc-EEEecCCCCHHHHHHHHHc--CCCEEEechHH
Q 017718 275 -QGRIP-VFLDGGVRRGTDVFKALAL--GASGIFIGRPV 309 (367)
Q Consensus 275 -~~~~~-via~GGI~~~~dv~kal~l--GAd~V~ig~~~ 309 (367)
+.++- ++--|-|.+++|+...+.. |+++..-|+.+
T Consensus 211 v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 211 VNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp C-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 23443 4445669999999999983 68888777744
No 255
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.62 E-value=0.018 Score=55.09 Aligned_cols=83 Identities=22% Similarity=0.189 Sum_probs=63.6
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+|+..+ .+|.| .+.+.++++.+.++|+|.|.+.| -+.+.+.++.+.++++..+.++||| |.+.+.
T Consensus 185 ~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn----------~s~e~l~~av~~~~~~~~leaSGgI-~~~ni~ 252 (281)
T PRK06543 185 HVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDN----------FSLDDLREGVELVDGRAIVEASGNV-NLNTVG 252 (281)
T ss_pred HHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECC----------CCHHHHHHHHHHhCCCeEEEEECCC-CHHHHH
Confidence 5555543 44443 67899999999999999999987 2344555555555667889999998 568899
Q ss_pred HHHHcCCCEEEechHHH
Q 017718 294 KALALGASGIFIGRPVV 310 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l 310 (367)
++..+|.|.+.+|.+..
T Consensus 253 ~yA~tGVD~Is~galth 269 (281)
T PRK06543 253 AIASTGVDVISVGALTH 269 (281)
T ss_pred HHHhcCCCEEEeCcccc
Confidence 99999999999998553
No 256
>PRK08999 hypothetical protein; Provisional
Probab=96.61 E-value=0.013 Score=56.61 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCC-CCCc-cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQ-LDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~~~-~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+-+.+++..+.+.|+|+|.++--..+. .... +..++.+.++++.. ++||++-||| +.+++...+.+||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 467888999999999999986422221 1112 22467777777665 7999999999 99999999999999998866
Q ss_pred HH
Q 017718 308 PV 309 (367)
Q Consensus 308 ~~ 309 (367)
.+
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 43
No 257
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.55 E-value=0.014 Score=55.11 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.++.+...| +|+|+|++.+ .+.+..++.|.++++... ++|++..||+ +++.+.+++.. ||++.+||.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~----TG~~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKT----TGTEVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCC----CCCCCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 5577777777 9999998743 133567888888876543 6899999998 57889998887 99999999763
No 258
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.54 E-value=0.027 Score=53.14 Aligned_cols=89 Identities=28% Similarity=0.277 Sum_probs=58.0
Q ss_pred HHHhhcCCCEEEEec-----CCHH-----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcE
Q 017718 216 WLQTITKLPILVKGV-----LTAE-----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPV 280 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~-----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~v 280 (367)
.+++..+-++.+|.+ ++.+ ..+.+.++|||+|-.|. | +..+..+.+.+.-+++.+ ++++.|
T Consensus 123 ~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTST-G---f~~~gAt~edv~lm~~~i~~~~~~~~vgI 198 (257)
T PRK05283 123 ACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTST-G---KVPVNATLEAARIMLEVIRDMGVAKTVGF 198 (257)
T ss_pred HHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCC-C---CCCCCCCHHHHHHHHHHHHhcccCCCeeE
Confidence 444443324677876 2323 25678999999999864 2 112224444444444443 357899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
=++|||++.+++.+++.+|.+.. |.-|+
T Consensus 199 KAsGGIrt~~~A~~~i~ag~~~l--g~~~~ 226 (257)
T PRK05283 199 KPAGGVRTAEDAAQYLALADEIL--GADWA 226 (257)
T ss_pred EccCCCCCHHHHHHHHHHHHHHh--Chhhc
Confidence 99999999999999999998753 55554
No 259
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.54 E-value=0.0088 Score=56.50 Aligned_cols=82 Identities=24% Similarity=0.406 Sum_probs=58.1
Q ss_pred hhcCCCEEEEec--------CCH---HH-HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 219 TITKLPILVKGV--------LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 219 ~~~~~Pv~vK~v--------~~~---~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
..+++|+++... .+. .. ++.+.++|+|+|-++.. ...+.+.++.+.. ++||.+.|||
T Consensus 133 ~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVva~GGi 201 (258)
T TIGR01949 133 DDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVVVAGGP 201 (258)
T ss_pred HHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEEEecCC
Confidence 346788877422 121 22 57788999999998521 2466777776655 7999999999
Q ss_pred C--CHHHHH----HHHHcCCCEEEechHHHH
Q 017718 287 R--RGTDVF----KALALGASGIFIGRPVVY 311 (367)
Q Consensus 287 ~--~~~dv~----kal~lGAd~V~ig~~~l~ 311 (367)
+ +.+++. .++.+||+++.+|+.++.
T Consensus 202 ~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 202 KTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 9 655554 445899999999998874
No 260
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.52 E-value=0.01 Score=54.02 Aligned_cols=72 Identities=32% Similarity=0.344 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCC-----------CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLD-----------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~-----------~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
+-|..+.++|+|.|-. .||+.-. ...+++..-.+|.+.+ ++||+...|+..-. +=-++++||.+
T Consensus 136 ~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~vT-~PmAiaaGAsG 210 (242)
T PF04481_consen 136 QLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAVT-APMAIAAGASG 210 (242)
T ss_pred HHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchhh-HHHHHHcCCcc
Confidence 4488999999998876 5665311 1234566666777766 89999999997754 55688999999
Q ss_pred EEechHHH
Q 017718 303 IFIGRPVV 310 (367)
Q Consensus 303 V~ig~~~l 310 (367)
|++|+.+=
T Consensus 211 VGVGSavn 218 (242)
T PF04481_consen 211 VGVGSAVN 218 (242)
T ss_pred cchhHHhh
Confidence 99999763
No 261
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.52 E-value=0.14 Score=48.75 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=59.5
Q ss_pred cHHHHHhhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~-~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+++.+++.+++||+-+.-- ...+++.+.++|+|.|..+..- . |..+.+..++... ++|++ .|++|-++
T Consensus 56 ~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~------r-P~~~~~~~iK~~~--~~l~M--AD~stleE 124 (283)
T cd04727 56 MIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL------T-PADEEHHIDKHKF--KVPFV--CGARNLGE 124 (283)
T ss_pred HHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC------C-cHHHHHHHHHHHc--CCcEE--ccCCCHHH
Confidence 5668999999999987654 3789999999999999643211 1 2344555555433 45554 57999999
Q ss_pred HHHHHHcCCCEEE
Q 017718 292 VFKALALGASGIF 304 (367)
Q Consensus 292 v~kal~lGAd~V~ 304 (367)
+..+..+|||.|.
T Consensus 125 al~a~~~Gad~I~ 137 (283)
T cd04727 125 ALRRISEGAAMIR 137 (283)
T ss_pred HHHHHHCCCCEEE
Confidence 9999999999873
No 262
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.47 E-value=0.063 Score=49.29 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCC-CC--CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+-+.+++..+.+.|+|++.++---.+. .. ..+..++.+.++.+.. .++||++-|||. .+++.+.+..||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 367888999999999999996422221 11 1223455666665542 269999999997 789999999999999999
Q ss_pred hHHHH
Q 017718 307 RPVVY 311 (367)
Q Consensus 307 ~~~l~ 311 (367)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 98863
No 263
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.44 E-value=0.006 Score=56.58 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=44.2
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.=.|...|.+-...|+ .++.+ +.+.++++.+ .+.|+|..|||+|++++.+++..|||.|.+|+.+--
T Consensus 150 ~~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 150 EYLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HHTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HHhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 3467888887431121 12222 3333455544 389999999999999999999999999999997753
No 264
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.43 E-value=0.013 Score=60.97 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-cCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-lGAd~V~ig~~~ 309 (367)
.+-++.+.+.|+..|.+..- -|+ ..-..++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|
T Consensus 441 ~~~~~~~~~~Gageil~t~id~DGt---~~G~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~f 515 (538)
T PLN02617 441 YELAKAVEELGAGEILLNCIDCDGQ---GKGFDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIF 515 (538)
T ss_pred HHHHHHHHhcCCCEEEEeecccccc---ccCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeee
Confidence 35589999999999988541 111 1224677888888777 899999999999999999998 679999999988
Q ss_pred HHH
Q 017718 310 VYS 312 (367)
Q Consensus 310 l~~ 312 (367)
.|.
T Consensus 516 h~~ 518 (538)
T PLN02617 516 HRK 518 (538)
T ss_pred ccC
Confidence 773
No 265
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.36 E-value=0.03 Score=50.28 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=54.0
Q ss_pred cHHHHHhhcCCCEE--EEec---------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 213 SWKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~--vK~v---------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+...+|+.+++||| +|.. .+.+++..+.++|+|.|-+..+..... .+..+.+.+|++. ...++
T Consensus 23 dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~---~~l~M 96 (192)
T PF04131_consen 23 DIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEK---YQLVM 96 (192)
T ss_dssp HHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHC---TSEEE
T ss_pred HHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHh---CcEEe
Confidence 44588888999985 2321 467999999999999999986543221 3445566666552 24444
Q ss_pred EecCCCCHHHHHHHHHcCCCEEE
Q 017718 282 LDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ 304 (367)
..|.|-+|+..+..+|+|.|.
T Consensus 97 --ADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 97 --ADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp --EE-SSHHHHHHHHHTT-SEEE
T ss_pred --eecCCHHHHHHHHHcCCCEEE
Confidence 458999999999999999884
No 266
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.34 E-value=0.15 Score=50.15 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=70.2
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCC-ccc--hHHHHHHHHHHhcCCCcEEEecCCCCH-
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY-VPA--TIMALEEVVKATQGRIPVFLDGGVRRG- 289 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~-~~~--~~~~l~~i~~~~~~~~~via~GGI~~~- 289 (367)
.+++||++|..+ +.++ ++.+...|-+-+++--.|.++... ... .+..++.+++.. .+|||++..=.+|
T Consensus 198 ~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi~d~sH~~G~ 275 (335)
T PRK08673 198 KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVIVDPSHATGK 275 (335)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEEEeCCCCCcc
Confidence 368999999874 4555 556667888777775445545422 222 345566666554 6999886544444
Q ss_pred -----HHHHHHHHcCCCEEEechHHHHHhh-ccChHHH-HHHHHHHHHHHHHHHHHhC
Q 017718 290 -----TDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFELAMALSG 340 (367)
Q Consensus 290 -----~dv~kal~lGAd~V~ig~~~l~~l~-~~G~~~v-~~~i~~l~~el~~~m~~~G 340 (367)
.-...|+++|||+++|-.-+--.-+ ++|...+ -+-++.|.++++..-..+|
T Consensus 276 ~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 276 RDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred ccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 4556788899999999874422100 2332111 1234455555555555544
No 267
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.33 E-value=0.022 Score=51.97 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=55.7
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
++++.. ++.|.+..+.+.++++.+.++|+++|+- - + ...+++..+.+ . .+|.+- |+.|+.++.+
T Consensus 52 ~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs-P--~-------~~~~v~~~~~~-~--~i~~iP--G~~TptEi~~ 116 (204)
T TIGR01182 52 LLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS-P--G-------LTPELAKHAQD-H--GIPIIP--GVATPSEIML 116 (204)
T ss_pred HHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC-C--C-------CCHHHHHHHHH-c--CCcEEC--CCCCHHHHHH
Confidence 666655 4678888889999999999999999853 1 1 12234433322 2 677776 9999999999
Q ss_pred HHHcCCCEEEe
Q 017718 295 ALALGASGIFI 305 (367)
Q Consensus 295 al~lGAd~V~i 305 (367)
|+.+||+.|=+
T Consensus 117 A~~~Ga~~vKl 127 (204)
T TIGR01182 117 ALELGITALKL 127 (204)
T ss_pred HHHCCCCEEEE
Confidence 99999998754
No 268
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.31 E-value=0.19 Score=46.59 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=64.3
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCC
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 288 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~ 288 (367)
++|+. ++...+... ...+..+...+ -+|.|.+- +-|......-+..++-+.++++... .++.|-+||||.
T Consensus 105 ~Ir~~-g~k~GlalnP~T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~- 181 (223)
T PRK08745 105 LIKSH-GCQAGLVLNPATPVDILDWVLP-ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK- 181 (223)
T ss_pred HHHHC-CCceeEEeCCCCCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-
Confidence 55553 444433333 45566665555 37777652 2232222334556666666665432 247799999997
Q ss_pred HHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHH
Q 017718 289 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 332 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el 332 (367)
.+.+.++..+|||.+.+||.+ |. .+...+.++.+++.+
T Consensus 182 ~eti~~l~~aGaDi~V~GSai-F~-----~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 182 ADNIGAIAAAGADTFVAGSAI-FN-----APDYAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHHHHcCCCEEEEChhh-hC-----CCCHHHHHHHHHHHH
Confidence 567888888999999999984 42 112344556665543
No 269
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.29 E-value=0.1 Score=49.50 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=56.0
Q ss_pred hhcCCCEEEEec------CCH-----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 219 TITKLPILVKGV------LTA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 219 ~~~~~Pv~vK~v------~~~-----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
+.|++|+++ .. .+. ..++.+.+.|||.|-+-- . . +.+.++.+.. .+||+..||=.
T Consensus 137 ~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y-------~---~-~~f~~vv~a~--~vPVviaGG~k 202 (264)
T PRK08227 137 LRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY-------V---E-EGFERITAGC--PVPIVIAGGKK 202 (264)
T ss_pred HHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC-------C---H-HHHHHHHHcC--CCcEEEeCCCC
Confidence 458999887 32 111 227889999999998732 1 1 5677777755 79999999988
Q ss_pred CH-HHHH----HHHHcCCCEEEechHHH
Q 017718 288 RG-TDVF----KALALGASGIFIGRPVV 310 (367)
Q Consensus 288 ~~-~dv~----kal~lGAd~V~ig~~~l 310 (367)
.. +|++ .++..||.+|.+||-+.
T Consensus 203 ~~~~~~L~~v~~ai~aGa~Gv~~GRNIf 230 (264)
T PRK08227 203 LPERDALEMCYQAIDEGASGVDMGRNIF 230 (264)
T ss_pred CCHHHHHHHHHHHHHcCCceeeechhhh
Confidence 53 3344 56778999999999554
No 270
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.28 E-value=0.018 Score=57.88 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+..+.++|+|.|++....|. +....+.+.++++..+ +++|+ .|+|.|.+++..++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998653321 2345677888877653 45544 589999999999999999999877
No 271
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.26 E-value=0.4 Score=44.62 Aligned_cols=111 Identities=13% Similarity=0.228 Sum_probs=65.3
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCC
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 288 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~ 288 (367)
.+|+ .++...+... ...+..+...+ -+|.|.+- +-|......-+..++-+.++++.... ++.|-+||||.
T Consensus 103 ~Ik~-~G~kaGlalnP~T~~~~l~~~l~-~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~- 179 (229)
T PRK09722 103 EIRR-AGMKVGLVLNPETPVESIKYYIH-LLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN- 179 (229)
T ss_pred HHHH-cCCCEEEEeCCCCCHHHHHHHHH-hcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-
Confidence 4444 2444433333 44566665554 36777653 22221223345566666666654422 47799999998
Q ss_pred HHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 289 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
.+.+.++..+|||.+.+||..+|+. .+...+.++.+++.++
T Consensus 180 ~~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 180 QKTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 5678888899999999998766631 1123445666665443
No 272
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.24 E-value=0.19 Score=46.77 Aligned_cols=93 Identities=10% Similarity=-0.020 Sum_probs=57.4
Q ss_pred HHHHhhcCC--CEEEEec--CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecC
Q 017718 215 KWLQTITKL--PILVKGV--LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGG 285 (367)
Q Consensus 215 ~~l~~~~~~--Pv~vK~v--~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GG 285 (367)
+++|+. +. ...+... ...+..+...+. +|.|.+- +-|......-+..++-+.++++.... ++.|-+|||
T Consensus 110 ~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGG 187 (228)
T PRK08091 110 EWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGS 187 (228)
T ss_pred HHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 356553 44 3333332 456777666653 7887763 22221222334456666666554322 577999999
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|. .+.+.++..+|||.+.+|+. +|
T Consensus 188 I~-~~ti~~l~~aGaD~~V~GSa-lF 211 (228)
T PRK08091 188 MT-LELASYLKQHQIDWVVSGSA-LF 211 (228)
T ss_pred CC-HHHHHHHHHCCCCEEEEChh-hh
Confidence 97 56788888999999999997 45
No 273
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.21 E-value=0.024 Score=59.12 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCC-C-CCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-----------HHHHHHHHcCC
Q 017718 234 EDARIAVQAGAAGIIVSNHGAR-Q-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 300 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~-~-~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-----------~dv~kal~lGA 300 (367)
+.|+...+.|||-|.+-+--+. . .....+.++.+.++.+.+ .+|+.+-||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 6689999999999998653221 1 112234578888988877 7999999999998 55899999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|-|.||+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997665
No 274
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.19 E-value=0.1 Score=56.83 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=62.1
Q ss_pred HHHHHhhcCCCEEEEe-cCCHHHHHHHH----Hc---CCcEEEEcCCCCCC-CCCc--cchHHHHHHHHHHhcC-CCcEE
Q 017718 214 WKWLQTITKLPILVKG-VLTAEDARIAV----QA---GAAGIIVSNHGARQ-LDYV--PATIMALEEVVKATQG-RIPVF 281 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~-v~~~~~a~~~~----~~---G~d~i~vs~~gg~~-~~~~--~~~~~~l~~i~~~~~~-~~~vi 281 (367)
.+..|+..+.-.++.. +-+.+++..+. .. |+|+|.++--..+. .... +.-++.+.++.+.+.. .+||+
T Consensus 91 ~~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~ 170 (755)
T PRK09517 91 YTQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASV 170 (755)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEE
Confidence 3445544332223333 35666665432 22 59999996422221 1121 2256778877776621 39999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+-||| +.+++.+++..||++|.+-+.++
T Consensus 171 AiGGI-~~~~~~~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 171 AIGGV-GLRNAAELAATGIDGLCVVSAIM 198 (755)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEehHhh
Confidence 99999 88999999999999999999886
No 275
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.17 E-value=0.94 Score=43.39 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=102.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ |++...+.+|-. +..+ -+.+.++. ..+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG-SNSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC-CchHHH
Confidence 36677787544444444555777778888876443 334456666532 2222 35666664 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
+.++++.|+++|++++.+.. |.. ...+ ...+.+ -++.+
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~-----------------~~~~-------------~~~i~~----------~~~~i 122 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYY-----------------NKPT-------------QEGLYQ----------HFKAI 122 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 78888999999999998732 211 0000 000111 12356
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
.+.+++||++=.. .+.+..+.+.+.+ .|+-. .++. .....+.++.+..++++.|+. | ...
T Consensus 123 a~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p--~v~gi------K~s~-~d~~~~~~~~~~~~~~~~v~~-G---~d~ 189 (292)
T PRK03170 123 AEATDLPIILYNVPGRTGVDILPETVARLAEHP--NIVGI------KEAT-GDLERVSELIELVPDDFAVYS-G---DDA 189 (292)
T ss_pred HhcCCCCEEEEECccccCCCCCHHHHHHHHcCC--CEEEE------EECC-CCHHHHHHHHHhCCCCeEEEE-C---ChH
Confidence 6667889887654 4567777775542 22210 1111 123444445444443454443 3 234
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
.++..+.+|+++++-|...++
T Consensus 190 ~~~~~l~~G~~G~is~~~n~~ 210 (292)
T PRK03170 190 LALPFLALGGVGVISVAANVA 210 (292)
T ss_pred hHHHHHHcCCCEEEEhHHhhh
Confidence 467788999999998876544
No 276
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.04 E-value=0.034 Score=52.37 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc--CCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l--GAd~V~ig~~~ 309 (367)
+.++.+.+. +..|++.+-. .|+ .-+.++.+.++.+.+ ++|||++||+.+.+|+.++-.+ |...+.+|+++
T Consensus 162 e~~~~~~~~-~~~il~TdI~---rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Al 235 (253)
T TIGR02129 162 ETLEELSKY-CDEFLIHAAD---VEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSAL 235 (253)
T ss_pred HHHHHHHhh-CCEEEEeeec---ccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehH
Confidence 445666666 8888885421 111 225778888888776 8999999999999999988555 55557788876
Q ss_pred H
Q 017718 310 V 310 (367)
Q Consensus 310 l 310 (367)
+
T Consensus 236 f 236 (253)
T TIGR02129 236 D 236 (253)
T ss_pred H
Confidence 4
No 277
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.01 E-value=0.026 Score=58.40 Aligned_cols=246 Identities=18% Similarity=0.213 Sum_probs=134.0
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|... ...+++|++|.+- ...++.||+-|||...+ |..+|.+.++.|-..+++. ++++|+..+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 499999999754 2446789988875 46799999999997664 7799999999998888853 567776543
Q ss_pred hCC-----Cc----eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC-----CCCCchhHHhhhhcCCCCcccccccc
Q 017718 120 TGP-----GI----RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-----PRLGRREADIKNRFTLPPFLTLKNFQ 185 (367)
Q Consensus 120 ~~~-----~~----~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~-----p~~g~r~~~~~~~~~~p~~~~~~~~~ 185 (367)
... .. ..+-+.+ .....++++...+.++..+.|+-+- .+.-...+|++..- ........+.
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~p---d~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diM 165 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSP---NHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVM 165 (495)
T ss_pred HHhhccccccccccCCeecCC---CCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhh
Confidence 211 00 0111221 2233455666677788777764331 11001223433100 0000000000
Q ss_pred cc--ccCcccc-ccchhhHHHhhhcc---------Ccc----ccHHHHHhhc---------CCCEEEEec--CC---HHH
Q 017718 186 GL--DLGKMDE-ANDSGLAAYVAGQI---------DRS----LSWKWLQTIT---------KLPILVKGV--LT---AED 235 (367)
Q Consensus 186 ~~--~~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~~l~~~~---------~~Pv~vK~v--~~---~~~ 235 (367)
.. ....... .......+.+.... +.. ++.+.+.+.. ...+.|... .+ .+.
T Consensus 166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~ 245 (495)
T PTZ00314 166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIER 245 (495)
T ss_pred CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHH
Confidence 00 0000000 00000000000000 000 0111121111 122333222 22 366
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.++|+|.|.+....|++ ...++.+.++++..+ +++|++ |.|.|.+++..++.+|||++-+|
T Consensus 246 ~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 889999999999997533322 224678888887653 578777 99999999999999999999764
No 278
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.99 E-value=0.037 Score=54.15 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++.+.++|+|.|+++.+.|.. ....+.+.++++..+ +++|++ |.+.+.+++.+++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 355888999999999986533321 234567777776553 588887 99999999999999999999874
No 279
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.95 E-value=1.6 Score=41.73 Aligned_cols=109 Identities=26% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCHHHHHHHHH-cCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~-~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~i 305 (367)
.++++|+...+ .|+|.+.++. ||-+......-.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|=+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 57888877664 6999999974 55432111123678899999988 7999998887776 5588899999999999
Q ss_pred chHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCC
Q 017718 306 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGC 341 (367)
Q Consensus 306 g~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~ 341 (367)
+|.+..+... .. ..-.....+.+++.++..|..+|.
T Consensus 226 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 226 NTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9977654211 00 011333445566777777777764
No 280
>PLN02417 dihydrodipicolinate synthase
Probab=95.91 E-value=0.061 Score=51.47 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=59.3
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.|+.|-...-.. -..+.+..+++.+.+++||++.=|=.+..|+++ +-.+|||+|++-.|+.
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 45677899999999766542111111 123445556666677899998666556666665 3458999999999986
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GK---TSQEGLIKHFETVLD 124 (280)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 63 235655555555433
No 281
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.90 E-value=0.18 Score=47.27 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=52.9
Q ss_pred HHHhhcCCCEEEEecC---CH----HHHHHHHHcCCcEEEEcCC-----CCCC-CCCccch---HHHHHHHHHHhcC--C
Q 017718 216 WLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVSNH-----GARQ-LDYVPAT---IMALEEVVKATQG--R 277 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~---~~----~~a~~~~~~G~d~i~vs~~-----gg~~-~~~~~~~---~~~l~~i~~~~~~--~ 277 (367)
.+.....+||++-+-. +. +.++.+.++|+++|.+-.. .|+. ...-.+. .+.|..++++..+ +
T Consensus 63 ~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~ 142 (243)
T cd00377 63 RIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPD 142 (243)
T ss_pred HHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCC
Confidence 5556668998776543 33 3467888999999999321 1110 0011222 3344445555544 6
Q ss_pred CcEEEe--------cCCCCHHHHHH-HHHcCCCEEEechH
Q 017718 278 IPVFLD--------GGVRRGTDVFK-ALALGASGIFIGRP 308 (367)
Q Consensus 278 ~~via~--------GGI~~~~dv~k-al~lGAd~V~ig~~ 308 (367)
++|++= .|+...-.-.+ +..+|||+|++-.+
T Consensus 143 ~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 143 FVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred eEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 888885 23333333333 33489999998754
No 282
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=95.90 E-value=0.061 Score=52.03 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=60.4
Q ss_pred ecCCHHHHHHHHH------cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 229 GVLTAEDARIAVQ------AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 229 ~v~~~~~a~~~~~------~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
.+.+.++++.+.+ +|+|.|.+.|--- ...-...+.+.+.+..+.+++++++-++|||. .+.+.++..+|.|.
T Consensus 209 Ev~tleea~ea~~~~~~~~agaDiImLDnm~~-~~~~~~~~~e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA~tGVD~ 286 (308)
T PLN02716 209 ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVV-PLENGDVDVSMLKEAVELINGRFETEASGNVT-LDTVHKIGQTGVTY 286 (308)
T ss_pred EECCHHHHHHHHHhcccccCCCCEEEeCCCcc-cccccCCCHHHHHHHHHhhCCCceEEEECCCC-HHHHHHHHHcCCCE
Confidence 4678999999999 9999999988300 00111225566667666666678999999994 68888898999999
Q ss_pred EEechHHH
Q 017718 303 IFIGRPVV 310 (367)
Q Consensus 303 V~ig~~~l 310 (367)
+.+|.+..
T Consensus 287 Is~Galth 294 (308)
T PLN02716 287 ISSGALTH 294 (308)
T ss_pred EEeCcccc
Confidence 99998553
No 283
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.87 E-value=0.41 Score=45.54 Aligned_cols=88 Identities=24% Similarity=0.375 Sum_probs=56.6
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCCcc-c--hHHHHHHHHHHhcCCCcEEEecCCCC--
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP-A--TIMALEEVVKATQGRIPVFLDGGVRR-- 288 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~-~--~~~~l~~i~~~~~~~~~via~GGI~~-- 288 (367)
.+++||++|..+ +.++ ++.+...|-.-+++--.|++....-+ . .+..++.+++.. .+||+.|..=..
T Consensus 132 ~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~~D~sHs~G~ 209 (266)
T PRK13398 132 KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPIIVDPSHATGR 209 (266)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEEEeCCCcccc
Confidence 468999999873 5555 45566678766666444554442222 2 334455555443 689999643322
Q ss_pred ----HHHHHHHHHcCCCEEEechHH
Q 017718 289 ----GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ----~~dv~kal~lGAd~V~ig~~~ 309 (367)
...+..++++||++++|-+-+
T Consensus 210 ~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 210 RELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred hhhHHHHHHHHHHcCCCEEEEeccC
Confidence 466778889999999999755
No 284
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.85 E-value=0.069 Score=49.74 Aligned_cols=73 Identities=30% Similarity=0.423 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEcC-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.|+...+.|+..+.+-. .|. ..+++-..+.+.+|.+.+ .+||=.-||||+-+++.+.|.+|++-|.+|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 4678899999999988632 121 224556788999999887 899999999999999999999999999999943
No 285
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.81 E-value=0.037 Score=56.62 Aligned_cols=249 Identities=19% Similarity=0.263 Sum_probs=130.7
Q ss_pred ccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... ..+++|++|.+- +.+++.|++-|||.-.+ |..++.+.++.|-.-++.. ++++|+..+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 4999999997552 446889999875 78999999999996554 6678777777776555542 344543221
Q ss_pred ----hCC--CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCC----CCC-chhHHhhhhcCCCCcccccccccc-
Q 017718 120 ----TGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFTLPPFLTLKNFQGL- 187 (367)
Q Consensus 120 ----~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p----~~g-~r~~~~~~~~~~p~~~~~~~~~~~- 187 (367)
... ....-++..-....-..++++...+.++..+.|.=+.. ..| -..+|+..... + ......+...
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~-~~~V~dvm~~~ 152 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-K-GKPVSEVMTRE 152 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-C-CCCHHHhhCCC
Confidence 111 11000111111223344566667777887776643320 001 11233321000 0 0000000000
Q ss_pred ccCcccc-ccchhhHHHhhhcc---------Ccc----ccHHHHHhhcCCC---------EEEEec--C---CHHHHHHH
Q 017718 188 DLGKMDE-ANDSGLAAYVAGQI---------DRS----LSWKWLQTITKLP---------ILVKGV--L---TAEDARIA 239 (367)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~~l~~~~~~P---------v~vK~v--~---~~~~a~~~ 239 (367)
....... .......+.+.... +.. ++.+.+.+....| ++|-.. . +.+.++.+
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L 232 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEAL 232 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence 0000000 00000000000000 000 1222221111112 222222 1 24678899
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.++|+|.|.+..+-|+ ....++.+.++++... ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 233 ~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 9999999999763332 1346677888877643 688888 99999999999999999999766
No 286
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.80 E-value=0.042 Score=56.97 Aligned_cols=246 Identities=16% Similarity=0.153 Sum_probs=128.9
Q ss_pred ccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... ..+++|++|.+- ...+..||+-|||...+ +..++.+..+.|...++.. +.+.|+...
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 5999999997552 446788887764 36688999999997664 6789999999987656653 345554332
Q ss_pred h----C--CC---ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecC-----CCCCCchhHHhhhhcCCCCcccccccc
Q 017718 120 T----G--PG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD-----TPRLGRREADIKNRFTLPPFLTLKNFQ 185 (367)
Q Consensus 120 ~----~--~~---~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd-----~p~~g~r~~~~~~~~~~p~~~~~~~~~ 185 (367)
. . .. ...+.+. ......++++...+.++..+.|+=+ .++.-.-.+|++..- .+. .....+.
T Consensus 95 ~Irkvk~~~~gmi~dpvtV~---pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~~-~~V~eIM 169 (505)
T PLN02274 95 IVRKAKSRRVGFVSDPVVKS---PSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DRE-TKLSEVM 169 (505)
T ss_pred HHHHhhcccccccCCCeeeC---CCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-ccC-CcHHHHh
Confidence 1 1 10 0111121 2223445566667778877776432 111101123332100 000 0000000
Q ss_pred ccc--cCcccc-ccchhhHHHhhhcc---------Ccc----ccHHHHHhhcC------------CCEEEEe--cC---C
Q 017718 186 GLD--LGKMDE-ANDSGLAAYVAGQI---------DRS----LSWKWLQTITK------------LPILVKG--VL---T 232 (367)
Q Consensus 186 ~~~--~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~~l~~~~~------------~Pv~vK~--v~---~ 232 (367)
... ...... .......+.+.... +.. ++.+.+.+... ..+.+.- .. .
T Consensus 170 t~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~ 249 (505)
T PLN02274 170 TSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESD 249 (505)
T ss_pred ccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccH
Confidence 000 000000 00000000000000 001 12221111111 1233322 12 2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-++.+.++|+|.|.+..+.|+ ....++.+.++++..+ +++||+ |+|.|.+++..++.+|||+|.+|
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 46689999999999999763332 1345688888887653 355554 88999999999999999999775
No 287
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.73 E-value=2.1 Score=41.21 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=73.4
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=.. -+++.|++.+|..-|=+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887766 57999999974 554321 1123678899999887 789888664333 46788899999999999
Q ss_pred chHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|.+..+... ..+ .-.....+.+++.++..|+.+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 232 ATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred CcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977543210 010 113334456677777777777753
No 288
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.72 E-value=0.079 Score=51.09 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=60.1
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.|+.|-... +..-..+++..+++.+.+++||++.-|-.+-.|+++ +-.+|||+|++..|+.
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 46677899999999665442111 111233455666666777899997656566666643 4457999999999997
Q ss_pred HHhhccChHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~e 331 (367)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 345555555555443
No 289
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.71 E-value=0.42 Score=43.82 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=55.1
Q ss_pred HHHhhcCCCEEE---Eec--------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 216 WLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 216 ~l~~~~~~Pv~v---K~v--------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.+++..++|++. |.. .+.++++.+.++|+|.|.+...-.+ ...+....+.+..+++.. +++++.
T Consensus 54 ~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~iiv-- 128 (219)
T cd04729 54 AIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLLMA-- 128 (219)
T ss_pred HHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeEEE--
Confidence 555556788763 222 2346889999999998777431111 011123344555555432 567766
Q ss_pred CCCCHHHHHHHHHcCCCEEEec
Q 017718 285 GVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.+++.++..+|+|.+.+.
T Consensus 129 ~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 129 DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred ECCCHHHHHHHHHcCCCEEEcc
Confidence 6899999999999999998654
No 290
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.69 E-value=0.073 Score=51.51 Aligned_cols=92 Identities=20% Similarity=0.310 Sum_probs=59.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal----~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.|+.|-...-.. --.+.+..+++.+.+++|||+.-|- +-.++++.. .+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45678899999999665442211111 1234566666777778999986663 556665433 47999999999987
Q ss_pred HHhhccChHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~e 331 (367)
+.. .++++.+++..+.+.
T Consensus 113 ~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 632 355665665555443
No 291
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.67 E-value=0.083 Score=47.49 Aligned_cols=76 Identities=29% Similarity=0.291 Sum_probs=55.2
Q ss_pred HHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+++..+ +++..-.+.+.+.+..+.++|+|+|... +. ..+.+ +.++.. .++++. |+.|.+++.+
T Consensus 48 ~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p---~~-------~~~~~-~~~~~~--~~~~i~--gv~t~~e~~~ 112 (190)
T cd00452 48 ALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP---GL-------DPEVV-KAANRA--GIPLLP--GVATPTEIMQ 112 (190)
T ss_pred HHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC---CC-------CHHHH-HHHHHc--CCcEEC--CcCCHHHHHH
Confidence 6666664 5666666788999999999999999642 11 12222 333333 567765 8889999999
Q ss_pred HHHcCCCEEEec
Q 017718 295 ALALGASGIFIG 306 (367)
Q Consensus 295 al~lGAd~V~ig 306 (367)
++.+|||.+.+.
T Consensus 113 A~~~Gad~i~~~ 124 (190)
T cd00452 113 ALELGADIVKLF 124 (190)
T ss_pred HHHCCCCEEEEc
Confidence 999999999983
No 292
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=95.65 E-value=0.057 Score=49.20 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=61.4
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
.+.+.++.+++.+.|+.-|-|-|..=+++....++..-| .+..+.++-+++-+||.|++|+.++-..|..+|.+|-.
T Consensus 192 EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTskL---~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEs 268 (289)
T KOG4201|consen 192 EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTSKL---LEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGES 268 (289)
T ss_pred eeccHHHHHHHHHhCcEEEeecCCccceeeechhhHHHH---HhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHH
Confidence 467888999999999998888764333333333333333 23345578889999999999999999999999999998
Q ss_pred HHHH
Q 017718 309 VVYS 312 (367)
Q Consensus 309 ~l~~ 312 (367)
++..
T Consensus 269 lmk~ 272 (289)
T KOG4201|consen 269 LMKQ 272 (289)
T ss_pred HHhc
Confidence 8863
No 293
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.63 E-value=0.27 Score=48.58 Aligned_cols=119 Identities=20% Similarity=0.341 Sum_probs=70.7
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCC----ccchHHHHHHHHHHhcCCCcEEEec----C
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPVFLDG----G 285 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~~~via~G----G 285 (367)
.+++||++|--+ +.++ ++.+.+.|-+-|++--.|=+++.+ -...+..++.+++.. .+|||+|- |
T Consensus 206 ~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPVi~DpsH~~G 283 (352)
T PRK13396 206 AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPIMIDPSHGTG 283 (352)
T ss_pred ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCEEECCcccCC
Confidence 368999999874 4555 566677888777776545444432 223566777776654 69999973 3
Q ss_pred CC--CHHHHHHHHHcCCCEEEechHHHHHhh-ccChHHH-HHHHHHHHHHHHHHHHHhC
Q 017718 286 VR--RGTDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFELAMALSG 340 (367)
Q Consensus 286 I~--~~~dv~kal~lGAd~V~ig~~~l~~l~-~~G~~~v-~~~i~~l~~el~~~m~~~G 340 (367)
.+ ...-...|+++|||+++|=.-+--.-+ +.|...+ -+-++.|.++++..-..+|
T Consensus 284 ~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g 342 (352)
T PRK13396 284 KSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVG 342 (352)
T ss_pred cHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 32 233445677899999999874422111 1222111 1234455556665555555
No 294
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.61 E-value=0.083 Score=50.76 Aligned_cols=91 Identities=20% Similarity=0.318 Sum_probs=58.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka----l~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||++++-.|+.
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456788999999996654422111111 234555666666678999997665 66666643 347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.++++.+.+
T Consensus 106 ~~~---~~~~i~~~f~~v~~ 122 (289)
T cd00951 106 TEA---PQEGLYAHVEAVCK 122 (289)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 632 35555555555433
No 295
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.61 E-value=0.067 Score=49.21 Aligned_cols=75 Identities=27% Similarity=0.240 Sum_probs=55.0
Q ss_pred HHHhhcC----CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 216 WLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~----~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.+++..+ +.|.+..+.+.++++.+.++|+++|+--+ ...+++..+. .. ++|++- |+.|+.+
T Consensus 57 ~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~----------~~~~v~~~~~-~~--~i~~iP--G~~T~~E 121 (213)
T PRK06552 57 ELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS----------FNRETAKICN-LY--QIPYLP--GCMTVTE 121 (213)
T ss_pred HHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEEC--CcCCHHH
Confidence 6666652 55677778999999999999999987311 1223333322 22 566665 8999999
Q ss_pred HHHHHHcCCCEEEe
Q 017718 292 VFKALALGASGIFI 305 (367)
Q Consensus 292 v~kal~lGAd~V~i 305 (367)
+..++.+|||.|.+
T Consensus 122 ~~~A~~~Gad~vkl 135 (213)
T PRK06552 122 IVTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999998
No 296
>PRK14057 epimerase; Provisional
Probab=95.60 E-value=0.48 Score=44.72 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
...+..+...+. +|.|.+- +-|......-+..++-+.++++.... ++.|-+||||.. +.+.++.++|||.+.+
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVS 220 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEE
Confidence 456777766654 7877763 22211122334455566665554322 577999999975 4688888999999999
Q ss_pred chHH
Q 017718 306 GRPV 309 (367)
Q Consensus 306 g~~~ 309 (367)
|+.+
T Consensus 221 GSal 224 (254)
T PRK14057 221 GSAL 224 (254)
T ss_pred ChHh
Confidence 9875
No 297
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=95.60 E-value=0.04 Score=51.98 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=53.6
Q ss_pred HHHHHH-HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~-~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.++.+ ...++|+|+|++.. .+.+++.+.|.++++.+ .+||++.+|+ |.+.+.+.|.. ||++.+||.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeee
Confidence 345554 67899999997632 23467888899998877 4999998887 56888888865 999999997643
No 298
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.58 E-value=2.4 Score=40.87 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=102.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ | ++.+.+.+|.. +... -+.+.+.. ..+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHH
Confidence 46678887544434444444677777778875432 3 34556766532 1122 34556654 345556
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++++.|++.|++++.+.. |.. ...+ ..++.+ -++.+
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y-----------------~~~~-------------~~~l~~----------~f~~i 121 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY-----------------NKPN-------------QEALYD----------HFAEV 121 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 67788999999999998722 221 1000 001111 12367
Q ss_pred Hhhc-CCCEEEEec-------CCHHHHHHHHH-c-CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 218 QTIT-KLPILVKGV-------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v-------~~~~~a~~~~~-~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+.+ ++||++=.. .+++...++.+ . .+-+|.-+. ..+..+.++.+..+.++.|+. |
T Consensus 122 a~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G--- 187 (294)
T TIGR02313 122 ADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G--- 187 (294)
T ss_pred HHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c---
Confidence 7778 799988764 45677777764 3 233333221 133444455444444554443 4
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.....+.++.+||++++.|..-++
T Consensus 188 ~d~~~~~~l~~Ga~G~is~~~n~~ 211 (294)
T TIGR02313 188 IELLCLPMLAIGAAGSIAATANVE 211 (294)
T ss_pred chHHHHHHHHCCCCEEEecHHhhC
Confidence 235566788999999998885443
No 299
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.54 E-value=0.067 Score=49.43 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH--cCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~--lGAd~V~ig~~~l 310 (367)
.+.|+...+.|+|.+.+-.=-+. .+.+...+.+.++.+. +|+...|||++.+|+.+++. .||+-|.+||..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 46688889999999988542221 1445678888888764 58999999999999999876 2799999999653
No 300
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.48 E-value=0.096 Score=50.89 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal----~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.|+.|-...-.. -..+.+..+++.+++++|||+.-|=.+..++++.. .+|||+|++-.|+.
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 45678899999999765442111111 12345555666677789999865555556666433 37999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.++++.+.+
T Consensus 115 ~~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 115 LPL---DVDTAVQFYRDVAE 131 (309)
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 34555555544433
No 301
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.47 E-value=0.11 Score=49.34 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=59.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-.. -..+.+..+++.+++++||++.-|-.+-.++++ +-.+|||+|++..|+.
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 46677889999999766553222121 234456666676667899998666555555554 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+. ..++++.+++..+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 74 245555555555433
No 302
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.47 E-value=0.063 Score=55.64 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+-++.+.++|+|.|+|.+.-|+ .....+.+.++++..+++++ +..|-|.+.+++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 5578899999999999643321 11236778888776643344 44599999999999999999999884
No 303
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.45 E-value=0.059 Score=53.17 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-+..+.++|+|.|++...-|+ .....+.+.++++..+ ++|||+ |.|-|++-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 46688899999999999753232 1235567888887764 788886 88999999999999999999888
No 304
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.45 E-value=2.4 Score=40.17 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=104.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ + ++.+.+.+|-. +... -+.++++- ..+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHH
Confidence 5567777544444555556788888888876543 2 33445665522 2222 35566654 3355567
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++++.++++|++++.+.- |.. ...+ .....+ -++.+.
T Consensus 82 i~~a~~a~~~Gad~v~v~p--P~y-----------------~~~~-------------~~~~~~----------~~~~ia 119 (281)
T cd00408 82 IELARHAEEAGADGVLVVP--PYY-----------------NKPS-------------QEGIVA----------HFKAVA 119 (281)
T ss_pred HHHHHHHHHcCCCEEEECC--CcC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7888999999999998722 211 0000 000111 123566
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+.+++|+++-.. .+++..+++.+.. +-+|.- +. .....+.++.+..++++.|+. |. ..
T Consensus 120 ~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~---------s~-~d~~~~~~~~~~~~~~~~v~~-G~---d~ 185 (281)
T cd00408 120 DASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKD---------SS-GDLDRLTRLIALLGPDFAVLS-GD---DD 185 (281)
T ss_pred hcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEe---------CC-CCHHHHHHHHHhcCCCeEEEE-cc---hH
Confidence 667899988654 5678777777522 222222 11 344445556555544555553 42 56
Q ss_pred HHHHHHHcCCCEEEechHHH
Q 017718 291 DVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l 310 (367)
.+...+.+|+++++.|...+
T Consensus 186 ~~~~~l~~G~~G~i~~~~n~ 205 (281)
T cd00408 186 LLLPALALGADGAISGAANV 205 (281)
T ss_pred HHHHHHHcCCCEEEehHHhh
Confidence 78888999999999887543
No 305
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=95.42 E-value=0.59 Score=42.12 Aligned_cols=124 Identities=17% Similarity=0.079 Sum_probs=76.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEe-cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALT-VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~it-vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (367)
..|.+.+.+.++.+.+.|++.|-+. +|.+.. | |+ ..
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~-------------~------~~------------------------~~ 43 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFV-------------P------NL------------------------TF 43 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------C------Cc------------------------cc
Confidence 4577888899999999999998775 444431 1 00 00
Q ss_pred ccc-HHHHHhhcCCCEE--EEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 211 SLS-WKWLQTITKLPIL--VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 211 ~~~-~~~l~~~~~~Pv~--vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+. .+++++..+.|+. ++.....+.++.+.++|+|+|++ |++.. ......++.+++ . .+.++..-...
T Consensus 44 ~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v--h~~~~----~~~~~~~~~~~~-~--g~~~~~~~~~~ 114 (210)
T TIGR01163 44 GPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV--HPEAS----EHIHRLLQLIKD-L--GAKAGIVLNPA 114 (210)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--ccCCc----hhHHHHHHHHHH-c--CCcEEEEECCC
Confidence 011 1266655566752 44444456688889999999999 55421 122334444332 3 33333333466
Q ss_pred CHHHHHHHHHcCCCEEEech
Q 017718 288 RGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~ 307 (367)
+..+.++.+..++|.+.+++
T Consensus 115 t~~e~~~~~~~~~d~i~~~~ 134 (210)
T TIGR01163 115 TPLEFLEYVLPDVDLVLLMS 134 (210)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 77888888888999998865
No 306
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.37 E-value=0.074 Score=54.80 Aligned_cols=247 Identities=17% Similarity=0.222 Sum_probs=127.8
Q ss_pred ccccceeeccccC-CC-CCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~-~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... .. +++|++|+ .+..++.||+-|||-..+ +..++.+.++.|-..++.. +.+.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTA-DGTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccC-CCCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHHH
Confidence 5999999997663 34 48899997 488999999999996654 7789999999996666642 334443322
Q ss_pred h---CC-CceEE-EEeecCCHHHHHHHHHHHHHcCCcEEEEecCC--CCCCchhHHhhhhcCCCCccccccccccccCcc
Q 017718 120 T---GP-GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (367)
Q Consensus 120 ~---~~-~~~~~-QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~ 192 (367)
. .. ...+. ....-....-..+++++..+.++..+.|+-+. ++.---.+|++.. +.......+........
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~~~~~V~diMt~~~itV 161 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---DRFTQVRDVMSTDLVTL 161 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---ccCCCHHHhccCCceEE
Confidence 1 11 10110 00001112234456666666777666653221 1100112333210 00000000000000000
Q ss_pred cc-ccchhhHHHhhhc-------c--Ccc----ccHHHHHhhcCC-CEE-EEe---------c--CCHHHHHHHHHcCCc
Q 017718 193 DE-ANDSGLAAYVAGQ-------I--DRS----LSWKWLQTITKL-PIL-VKG---------V--LTAEDARIAVQAGAA 245 (367)
Q Consensus 193 ~~-~~~~~~~~~~~~~-------~--d~~----~~~~~l~~~~~~-Pv~-vK~---------v--~~~~~a~~~~~~G~d 245 (367)
.. .......+.+... . +.. +++..+.+.... |.. .++ + ...+.++.+.++|+|
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd 241 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVD 241 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCC
Confidence 00 0000000000000 0 000 122211111111 110 001 1 113558889999999
Q ss_pred EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 246 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 246 ~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.|++..+.|+ +....+.+++|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 242 ~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 242 VLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred EEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 9999754442 4567788899988664 566666 89999999999999999998744
No 307
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.32 E-value=0.17 Score=49.41 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=59.8
Q ss_pred HHHhhc--CCCEEEEecCCHH---HHHHHHHcC--CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017718 216 WLQTIT--KLPILVKGVLTAE---DARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v~~~~---~a~~~~~~G--~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~ 288 (367)
++++.. .+++.+-...+.+ -+..+.++| +|.|++.-.-|+ ....++.+.++++.. ..|.+..|.|.+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t 147 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGT 147 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 455443 2334333334444 367788989 799998653222 134567788888766 568888899999
Q ss_pred HHHHHHHHHcCCCEEEec
Q 017718 289 GTDVFKALALGASGIFIG 306 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig 306 (367)
.+++..++.+|||+|-+|
T Consensus 148 ~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 148 PEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHHHcCcCEEEEC
Confidence 999999999999999877
No 308
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=95.30 E-value=0.14 Score=46.59 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 263 TIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 263 ~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.++-++++++.. +.++.|.+||||+.. .+.++..+|||.+.+||.++
T Consensus 149 ~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 149 VLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp HHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 555555555443 236999999999874 67788889999999998654
No 309
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.30 E-value=0.072 Score=48.77 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.|+...++||++|.+...-+. .. ...+.+..+++.+ ++||+.-|+|++..++..++.+|||+|.++.+.
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~~---g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-FQ---GSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-cC---CCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeecc
Confidence 46799999999999988532111 11 2335566666655 799999999999999999999999999988643
No 310
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.22 E-value=0.15 Score=49.36 Aligned_cols=77 Identities=27% Similarity=0.408 Sum_probs=51.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHH----HHHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~----kal~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.|+.|-...-.. -..+.+..+++.+.+++|||+--|=.+-.+++ .+-.+|||++++-.|++
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 46788999999999765542211111 12345566667777799999944444444444 33348999999999998
Q ss_pred HH
Q 017718 311 YS 312 (367)
Q Consensus 311 ~~ 312 (367)
+.
T Consensus 111 ~k 112 (299)
T COG0329 111 NK 112 (299)
T ss_pred cC
Confidence 74
No 311
>PRK08005 epimerase; Validated
Probab=95.21 E-value=1.5 Score=40.25 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=56.8
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
++|+. ++...+... .+.+..+...+ -+|.|.+- +-|......-+..++-+.++++... ...|.+||||. .+.
T Consensus 101 ~Ik~~-G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~ 176 (210)
T PRK08005 101 DIRAI-GAKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP-AAECWADGGIT-LRA 176 (210)
T ss_pred HHHHc-CCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc-cCCEEEECCCC-HHH
Confidence 55543 444444443 44566665554 47777663 2222222334556666776665543 35799999997 566
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.++..+|||.+.+||.++
T Consensus 177 i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 177 ARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHHHHCCCCEEEEChHhh
Confidence 7788899999999998753
No 312
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.17 E-value=0.15 Score=48.98 Aligned_cols=91 Identities=11% Similarity=0.150 Sum_probs=56.5
Q ss_pred HHHHHHcC-CcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G-~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+.| +++|.+.|+.|-...-... ..+.+..+++.+.+++||++.=|-.+-.|+++ +-.+|||+|++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 45678899 9999997655432211111 23345556666667899988644444555543 334799999999998
Q ss_pred HHHhhccChHHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEMLR 329 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l~ 329 (367)
.+.. .++++.++++.+.
T Consensus 107 y~~~---~~~~i~~yf~~v~ 123 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTII 123 (290)
T ss_pred CCCC---CHHHHHHHHHHHH
Confidence 7642 2455555554443
No 313
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.15 E-value=1.4 Score=41.65 Aligned_cols=92 Identities=28% Similarity=0.459 Sum_probs=59.9
Q ss_pred cHHHHHh--hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCCc-cc--hHHHHHHHHHHhcCCCcEE
Q 017718 213 SWKWLQT--ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~~~l~~--~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~-~~--~~~~l~~i~~~~~~~~~vi 281 (367)
+++-|++ +.++||++|-.+ +.++ |+.....|-..|++.-.|=|+++.. +- .+..++-+++.. .+|||
T Consensus 141 NF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVi 218 (286)
T COG2876 141 NFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVI 218 (286)
T ss_pred hhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEE
Confidence 3444444 357999999864 4554 7777888988888876665655543 22 345566666654 79999
Q ss_pred Eec----CCCCHHH--HHHHHHcCCCEEEec
Q 017718 282 LDG----GVRRGTD--VFKALALGASGIFIG 306 (367)
Q Consensus 282 a~G----GI~~~~d--v~kal~lGAd~V~ig 306 (367)
+|= |=++... +..+++.|||++|+-
T Consensus 219 vDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 219 VDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred ECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 953 3333222 235667899999985
No 314
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.14 E-value=2.8 Score=39.85 Aligned_cols=182 Identities=19% Similarity=0.179 Sum_probs=101.6
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|..+.|+.-.+-.+.++-....+-+.+.|+...+ + +....+.+|-. +... -+.++++- ..+.+.+
T Consensus 6 ~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 84 (284)
T cd00950 6 TALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAEA 84 (284)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHHH
Confidence 5567777544444444555777777888875443 2 23345665522 2222 35566654 3466777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++++.|+++|++++.+.- |.. .... ...+.+ -++.+.
T Consensus 85 ~~~a~~a~~~G~d~v~~~~--P~~-----------------~~~~-------------~~~l~~----------~~~~ia 122 (284)
T cd00950 85 IELTKRAEKAGADAALVVT--PYY-----------------NKPS-------------QEGLYA----------HFKAIA 122 (284)
T ss_pred HHHHHHHHHcCCCEEEEcc--ccc-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 8889999999999998731 211 0000 000111 123555
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+..++||++=.. .+++..+.+.+.. +-+|.-+ . .....+.++.+..++++.|+. | ...
T Consensus 123 ~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s---------~-~~~~~~~~~~~~~~~~~~v~~-G---~d~ 188 (284)
T cd00950 123 EATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEA---------T-GDLDRVSELIALCPDDFAVLS-G---DDA 188 (284)
T ss_pred hcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEEC---------C-CCHHHHHHHHHhCCCCeEEEe-C---ChH
Confidence 667888887653 4677777776542 2222211 1 123344455555544565553 4 234
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+...+.+|+++++.|...++
T Consensus 189 ~~~~~~~~G~~G~~s~~~n~~ 209 (284)
T cd00950 189 LTLPFLALGGVGVISVAANVA 209 (284)
T ss_pred hHHHHHHCCCCEEEehHHHhh
Confidence 566788899999998886543
No 315
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.14 E-value=0.14 Score=49.27 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=57.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka----l~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|.+.|+.|-...-... ..+++..+++.+.+++||++.=|- +-.++++. -.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 466788999999997655432221222 234455566667778999986553 45555543 347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.+++..+.+
T Consensus 111 ~~~---s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCE 127 (296)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555555555443
No 316
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.11 E-value=0.81 Score=41.95 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=54.4
Q ss_pred HHHhhcCCCEEEE---e-----c---CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 216 WLQTITKLPILVK---G-----V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 216 ~l~~~~~~Pv~vK---~-----v---~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.+|+.+++|++.. . + .+.+.++.+.++|+|.|++...-... ..+....+.+..+++. ..++++.
T Consensus 50 ~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~-p~~~~~~~~i~~~~~~--~~i~vi~-- 124 (221)
T PRK01130 50 AIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR-PDGETLAELVKRIKEY--PGQLLMA-- 124 (221)
T ss_pred HHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCCCHHHHHHHHHhC--CCCeEEE--
Confidence 5566667887622 1 1 23567999999999988775311100 0011233445444432 3577765
Q ss_pred CCCCHHHHHHHHHcCCCEEEec
Q 017718 285 GVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.+++.++..+|+|.+.++
T Consensus 125 ~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 125 DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred eCCCHHHHHHHHHcCCCEEEcC
Confidence 5789999999999999999774
No 317
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.08 E-value=0.21 Score=49.08 Aligned_cols=76 Identities=24% Similarity=0.254 Sum_probs=50.8
Q ss_pred HHHHHHcCCcEEEEcCCC---CC-CC------------CCccchHHHHHHHHHHh-cCCCcEEEecCCCCH-HHH----H
Q 017718 236 ARIAVQAGAAGIIVSNHG---AR-QL------------DYVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TDV----F 293 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~g---g~-~~------------~~~~~~~~~l~~i~~~~-~~~~~via~GGI~~~-~dv----~ 293 (367)
++.+.+.|||.|-+--.| +. .. .......+.++.+.+.+ .+++||+.+||=... +|+ .
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 788999999999985432 10 00 01123445566666654 347999999998854 333 3
Q ss_pred HH---HHcCCCEEEechHHHH
Q 017718 294 KA---LALGASGIFIGRPVVY 311 (367)
Q Consensus 294 ka---l~lGAd~V~ig~~~l~ 311 (367)
.+ +..||.++.+||=+..
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred HHHHhhhcCCcchhhchhhhc
Confidence 56 7789999999996654
No 318
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.06 E-value=1.3 Score=42.10 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=56.7
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCC---ccchHHHHHHHHHHhcCCCcEEEecCCCC--
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVRR-- 288 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~~~via~GGI~~-- 288 (367)
.+++||++|..+ +.++ ++.+.+.|.+-|++--.|-+..+. -...+..+..+++.. .+||+.|.+=..
T Consensus 130 ~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~~ds~Hs~G~ 207 (260)
T TIGR01361 130 KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPIIVDPSHAAGR 207 (260)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCEEEcCCCCCCc
Confidence 368999999874 4555 556667888766664233323312 124566777777655 699999433222
Q ss_pred ----HHHHHHHHHcCCCEEEechHH
Q 017718 289 ----GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ----~~dv~kal~lGAd~V~ig~~~ 309 (367)
..-...|.++||++++|-+-+
T Consensus 208 r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 208 RDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred cchHHHHHHHHHHcCCCEEEEEeCC
Confidence 234457888999999998755
No 319
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.04 E-value=0.14 Score=46.50 Aligned_cols=76 Identities=30% Similarity=0.269 Sum_probs=51.9
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+++.. ++-|.+..+.+.++++.+.++|+++++--+ -+.+.+..+.+ . ++|++- |+.|+.++.+
T Consensus 52 ~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~-~--~i~~iP--G~~TptEi~~ 116 (196)
T PF01081_consen 52 ALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYARE-Y--GIPYIP--GVMTPTEIMQ 116 (196)
T ss_dssp HHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHH-H--TSEEEE--EESSHHHHHH
T ss_pred HHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCcccC--CcCCHHHHHH
Confidence 455555 466777778999999999999999987521 13344444433 2 566665 7999999999
Q ss_pred HHHcCCCEEEec
Q 017718 295 ALALGASGIFIG 306 (367)
Q Consensus 295 al~lGAd~V~ig 306 (367)
|+.+||+.|=+-
T Consensus 117 A~~~G~~~vK~F 128 (196)
T PF01081_consen 117 ALEAGADIVKLF 128 (196)
T ss_dssp HHHTT-SEEEET
T ss_pred HHHCCCCEEEEe
Confidence 999999988664
No 320
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=94.92 E-value=0.68 Score=42.14 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=55.3
Q ss_pred HHHHHhhcCCCEEE--Ee---------cCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 214 WKWLQTITKLPILV--KG---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 214 ~~~l~~~~~~Pv~v--K~---------v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
++.+++.+++|||= |- ..+.++...+.++|++.|.+..+-....++ .--+.+.++ + .--.++
T Consensus 58 Ikai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~--~~~~~i~~~-k----~~~~l~ 130 (229)
T COG3010 58 IKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG--DLEELIARI-K----YPGQLA 130 (229)
T ss_pred HHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc--hHHHHHHHh-h----cCCcEE
Confidence 44667777888752 21 245789999999999999887643322222 222333332 1 222455
Q ss_pred ecCCCCHHHHHHHHHcCCCEEE
Q 017718 283 DGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ 304 (367)
.-.+.|.+|.+-|..+|+|.|+
T Consensus 131 MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 131 MADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred EeccCCHHHHHHHHHcCCcEEe
Confidence 5668999999999999999873
No 321
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.90 E-value=0.16 Score=47.73 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+-|+...++||++|.|-.-+. .-...++.|..+++.+ ++||+.-+.|-+..++.++..+|||+|.+=-.+
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 558889999999998854221 1123567777887777 799999999999999999999999999765433
No 322
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.88 E-value=0.19 Score=48.26 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=57.6
Q ss_pred HHHHHH-cCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQ-AGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~-~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+ .|+++|.+.++.|-...-... -.+++..+++.+++++|||+.=|-.+-.++++ +-.+|||+|++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 456778 999999997765532111111 23455666667777899999555556666654 345899999999998
Q ss_pred HHHhhccChHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l 328 (367)
.+.. .++++.++++.+
T Consensus 110 y~~~---~~~~l~~~f~~v 125 (293)
T PRK04147 110 YYPF---SFEEICDYYREI 125 (293)
T ss_pred CCCC---CHHHHHHHHHHH
Confidence 7642 234444444443
No 323
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.86 E-value=0.13 Score=52.90 Aligned_cols=244 Identities=17% Similarity=0.220 Sum_probs=128.8
Q ss_pred ccccceeeccccC-CC-CCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~-~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... .. +++|++|. +..+++.||+-|||--.+ |..+|.+.++.|-..++.. ++++++..+
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeeccc-ccCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 5999999998653 33 48899988 457999999999995543 7899999999998888853 456665432
Q ss_pred hC---C-C----ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCCchhHHhhhhcCCCCccccccccccccC
Q 017718 120 TG---P-G----IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (367)
Q Consensus 120 ~~---~-~----~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~ 190 (367)
.. . . ...+.+. .+ .-+.++++...+.+...++++=+. ++.-.-.+|++.. +.......+......
T Consensus 84 ~v~~VKv~eim~~~pvtv~--p~-~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---~~~~~V~dIMt~~li 157 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLA--PH-DTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---DRFTQVRDIMSTDLV 157 (475)
T ss_pred HHhhcchhhccccCCeEEC--CC-CCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC---CCCCCHHHHccCCce
Confidence 21 1 0 0111222 12 234455666666676655543211 1100112233210 000000000000000
Q ss_pred cccc-ccchhhHHHhhhc-------c--Ccc----ccHHHHHhhcCC-CE-------EEE---ec--CCHHHHHHHHHcC
Q 017718 191 KMDE-ANDSGLAAYVAGQ-------I--DRS----LSWKWLQTITKL-PI-------LVK---GV--LTAEDARIAVQAG 243 (367)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~-------~--d~~----~~~~~l~~~~~~-Pv-------~vK---~v--~~~~~a~~~~~~G 243 (367)
.... .......+.+... . +.. ++...+.+.... |. .+. ++ ...+-++.+.++|
T Consensus 158 tv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aG 237 (475)
T TIGR01303 158 TAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAG 237 (475)
T ss_pred EeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhC
Confidence 0000 0000000000000 0 000 122211111111 21 111 11 1135588999999
Q ss_pred CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 244 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 244 ~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+|.|++..+-|+. ....+.+.+|++... ++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus 238 Vd~i~~D~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 238 VDVLVIDTAHGHQ----VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CCEEEEeCCCCCc----HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 9999997633432 346677888877543 689999 77999999999999999998755
No 324
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.82 E-value=0.23 Score=47.56 Aligned_cols=92 Identities=20% Similarity=0.336 Sum_probs=57.6
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
+..+.+.|+++|.+.++.|-...-... ..+.+..+++.+.+++||++.=|-.+-.++++ +-.+|||+|++..|+.
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 456778999999997655432211222 23445556666677899998555555666553 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.+++..+.+
T Consensus 105 ~~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555455444433
No 325
>PRK06852 aldolase; Validated
Probab=94.79 E-value=0.17 Score=48.90 Aligned_cols=88 Identities=25% Similarity=0.274 Sum_probs=57.6
Q ss_pred hhcCCCEEE----Ee--c---CCH----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 219 TITKLPILV----KG--V---LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 219 ~~~~~Pv~v----K~--v---~~~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
+.|++|+++ ++ + .++ ..++.+.+.|||.|-+--.+ +.+....+.+.++.+.. +++||+..||
T Consensus 164 ~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpVviaGG 238 (304)
T PRK06852 164 HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKVVCAGG 238 (304)
T ss_pred HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcEEEeCC
Confidence 457999876 11 1 121 23788999999999984321 00112346666776654 3799999999
Q ss_pred CCCH-HHHH----HHHH-cCCCEEEechHHHH
Q 017718 286 VRRG-TDVF----KALA-LGASGIFIGRPVVY 311 (367)
Q Consensus 286 I~~~-~dv~----kal~-lGAd~V~ig~~~l~ 311 (367)
=... +|++ .++. .||.+|.+||=+..
T Consensus 239 ~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ 270 (304)
T PRK06852 239 SSTDPEEFLKQLYEQIHISGASGNATGRNIHQ 270 (304)
T ss_pred CCCCHHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 8853 3444 4666 89999999995543
No 326
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=94.79 E-value=0.091 Score=48.42 Aligned_cols=97 Identities=19% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.++++...+.|++-+++.-.---++++..-..+.+..+++..+.+..+.++|||+-.. +-+....|||.+.+|||+.
T Consensus 117 ~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~-~~~~~~~~ad~~VvGr~I~ 195 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVED-LKLFKGIPVKTFIAGRAIR 195 (216)
T ss_pred CCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhh-HHHHhcCCCCEEEECCccc
Confidence 456666666676766555521110123343333344445544443355699999998432 1123345999999999954
Q ss_pred HHhhccChHHHHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREEFEL 334 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~el~~ 334 (367)
.+ +.....++.++++++.
T Consensus 196 ~a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 196 GA------ADPAAAARAFKDEIAK 213 (216)
T ss_pred CC------CCHHHHHHHHHHHHHh
Confidence 22 1233466667666643
No 327
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.76 E-value=0.21 Score=47.88 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=57.0
Q ss_pred HHHHHHc-CCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQA-GAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~-G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+. |+++|.+.++.|-...-.. -..+.+..+++.+.+++|||+.=|-.+-.++++ +..+|||+|++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4667788 9999999776543211111 133455556666677899998433344444443 345899999999998
Q ss_pred HHHhhccChHHHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l~~ 330 (367)
.+.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~~~~~v~~ 124 (288)
T cd00954 107 YYKF---SFEEIKDYYREIIA 124 (288)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 34555555555443
No 328
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.75 E-value=0.24 Score=47.23 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=56.7
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|++++.+.++.|-...-... ..+.+..+++.+.+++||++-=|-.+..++++ +-.+|||+|++..|..
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 466788999999997654422111111 23345555666667899887444445566554 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.++++.+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555555544433
No 329
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.75 E-value=0.14 Score=49.92 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=50.9
Q ss_pred HHHHHHHHHcC--CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G--~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-++.+.++| +|.|++.-+-|+ .....+.++++++..+ . +.+..|.|-+++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34577888885 999999753332 1345677888877663 3 4555688999999999999999999777
No 330
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.73 E-value=4.2 Score=39.05 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++- ||-+.. ...-.++.|.+|++.+ ++|+..=||=.. -+++.|++.+|-.-|=+
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCC-CCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5778877655 69999999874 554321 1123678899999887 789988775544 46677889999999999
Q ss_pred chHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|.+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 230 ATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654211 01 0123344566777777888888754
No 331
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.73 E-value=0.32 Score=47.74 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=57.5
Q ss_pred HHHhhcCCCEEEEecC-CH----HHHHHHHHcCCcEEEEcC---CCCCCCCCcc---chHHHHHHHHHHhcCCCcEEEe-
Q 017718 216 WLQTITKLPILVKGVL-TA----EDARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQGRIPVFLD- 283 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~-~~----~~a~~~~~~G~d~i~vs~---~gg~~~~~~~---~~~~~l~~i~~~~~~~~~via~- 283 (367)
.+++..++||+++... +. +.++.+.++|+|+|.+.- ++.....+.. ...+.+.++++.+ ++||++-
T Consensus 95 ~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV~vKl 172 (334)
T PRK07565 95 RAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPVAVKL 172 (334)
T ss_pred HHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcEEEEe
Confidence 3445557999999863 33 447788899999999831 1111111111 1335556665554 6899984
Q ss_pred -cCCCCHHHHHHHHH-cCCCEEEech
Q 017718 284 -GGVRRGTDVFKALA-LGASGIFIGR 307 (367)
Q Consensus 284 -GGI~~~~dv~kal~-lGAd~V~ig~ 307 (367)
+++.+..++++++. .|+|+|.+-.
T Consensus 173 ~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 173 SPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred CCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 45556778888775 8999987743
No 332
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.72 E-value=0.15 Score=47.13 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=50.0
Q ss_pred CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 223 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 223 ~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
+-|.+..|.+.++++.+.++|+++|+--+ ...+++..+.+ . ++|++ =|+.|+.++..++.+||+.
T Consensus 71 ~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~~-~--~i~~i--PG~~TpsEi~~A~~~Ga~~ 135 (222)
T PRK07114 71 MILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCNR-R--KVPYS--PGCGSLSEIGYAEELGCEI 135 (222)
T ss_pred eEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--CCCCCHHHHHHHHHCCCCE
Confidence 55777778999999999999999986421 12333333322 2 45554 5899999999999999998
Q ss_pred EEec
Q 017718 303 IFIG 306 (367)
Q Consensus 303 V~ig 306 (367)
|=+-
T Consensus 136 vKlF 139 (222)
T PRK07114 136 VKLF 139 (222)
T ss_pred EEEC
Confidence 7543
No 333
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=94.71 E-value=0.31 Score=46.33 Aligned_cols=70 Identities=29% Similarity=0.323 Sum_probs=55.4
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH--hcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-+.++++.+.++|+|.|.+.|- +.+.+.++.+. .++++-+=++||| +.+.+..+..+|.|.+.+|
T Consensus 194 Evesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 194 EVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGI-TLENIREYAETGVDVISVG 262 (280)
T ss_pred EcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeC
Confidence 358999999999999999999882 23445555555 4457888889998 5678888889999999999
Q ss_pred hHH
Q 017718 307 RPV 309 (367)
Q Consensus 307 ~~~ 309 (367)
.+.
T Consensus 263 alt 265 (280)
T COG0157 263 ALT 265 (280)
T ss_pred ccc
Confidence 754
No 334
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.68 E-value=0.84 Score=43.88 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=76.2
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=+
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPYKG-EPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCcCC-CCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887765 58999999874 554321 1123678899998887 7999998877666 6788899999999999
Q ss_pred chHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|-+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 233 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 233 NTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9976543210 00 1123344566777788888888764
No 335
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.65 E-value=4.5 Score=39.08 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=107.3
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhC-C-CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~-~-~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+-..+.|+..++ | +..+.+.||-. +.. . -|...+.- ..+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 56677887643334444455677777788866443 3 33456776632 222 2 34666665 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|++.|++++.+. .|. +...+ ..++.+ .++++
T Consensus 88 ai~lak~a~~~Gad~il~v--~Py-----------------Y~k~~-------------~~gl~~----------hf~~i 125 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPY-----------------YNKPS-------------QEGLYA----------HFKAI 125 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCC-----------------CcCCC-------------hHHHHH----------HHHHH
Confidence 6789999999999999872 222 11100 001111 23477
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
.+.+++|+++=.+ .+++...++.+. -..+-+=.. ...++.+.++....+.+--++.+| .-+
T Consensus 126 a~a~~lPvilYN~P~~tg~~l~~e~i~~la~~-~nivgiKd~--------~gd~~~~~~~~~~~~~~~f~v~~G---~d~ 193 (299)
T COG0329 126 AEAVDLPVILYNIPSRTGVDLSPETIARLAEH-PNIVGVKDS--------SGDLDRLEEIIAALGDRDFIVLSG---DDE 193 (299)
T ss_pred HHhcCCCEEEEeCccccCCCCCHHHHHHHhcC-CCEEEEEeC--------CcCHHHHHHHHHhcCccCeeEEeC---chH
Confidence 7788999998886 467888888772 222223111 125666666665553321144445 356
Q ss_pred HHHHHHHcCCCEEEechH
Q 017718 291 DVFKALALGASGIFIGRP 308 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~ 308 (367)
..+-.+.+|++++..+..
T Consensus 194 ~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 194 LALPALLLGADGVISVTA 211 (299)
T ss_pred HHHHHHhCCCCeEEeccc
Confidence 667888899999998874
No 336
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.63 E-value=0.16 Score=48.69 Aligned_cols=90 Identities=19% Similarity=0.327 Sum_probs=55.1
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka----l~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-... ..+.+..+++.+++++|||+.=|=.+-.++++. -.+|||++++..|+.
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYY 107 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTS
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecccc
Confidence 567789999999997655422111111 234455556667778999985454455555533 347999999999986
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 108 ~~~---s~~~l~~y~~~i 122 (289)
T PF00701_consen 108 FKP---SQEELIDYFRAI 122 (289)
T ss_dssp SSC---CHHHHHHHHHHH
T ss_pred ccc---hhhHHHHHHHHH
Confidence 632 344555454443
No 337
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.61 E-value=0.16 Score=49.71 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=49.9
Q ss_pred HHHHHHHHcCC--cEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~--d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+..+.++|+ |.|.+...-| ......+.+.++++..+ .+||++ |.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 55788899965 9999964222 22345667888877652 455555 67889999999999999999877
No 338
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.60 E-value=0.26 Score=45.07 Aligned_cols=75 Identities=25% Similarity=0.243 Sum_probs=52.9
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+++..+ +.|.+..+.+.++++.+.++|+|+++..+ ...+.+.. +... .++++. | +.|.+++.
T Consensus 54 ~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~~~-~~~~--~~~~~~-G-~~t~~E~~ 118 (206)
T PRK09140 54 ALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVIRR-AVAL--GMVVMP-G-VATPTEAF 118 (206)
T ss_pred HHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHHHH-HHHC--CCcEEc-c-cCCHHHHH
Confidence 5666664 45666667899999999999999997621 12223322 2222 455444 3 99999999
Q ss_pred HHHHcCCCEEEe
Q 017718 294 KALALGASGIFI 305 (367)
Q Consensus 294 kal~lGAd~V~i 305 (367)
++..+|||.|.+
T Consensus 119 ~A~~~Gad~vk~ 130 (206)
T PRK09140 119 AALRAGAQALKL 130 (206)
T ss_pred HHHHcCCCEEEE
Confidence 999999999987
No 339
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=94.56 E-value=0.11 Score=47.52 Aligned_cols=81 Identities=19% Similarity=0.339 Sum_probs=52.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHcCCCEEEechHHHHHhh
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~-dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
+..+.+.|+++..+.. ...+.+.++++..+..+.+ .+|||+... ++.+++..|||.+.+||+++.+
T Consensus 132 ~~m~~e~G~~g~~~~~----------~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-- 198 (215)
T PRK13813 132 AKLAQEAGAFGVVAPA----------TRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-- 198 (215)
T ss_pred HHHHHHhCCCeEEECC----------CcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCC--
Confidence 4567788988876532 1234455565554333444 899999763 6778888999999999985431
Q ss_pred ccChHHHHHHHHHHHHHHH
Q 017718 315 AEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 315 ~~G~~~v~~~i~~l~~el~ 333 (367)
+ ...+.++.++++++
T Consensus 199 ---~-d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ---A-DPREAAKAINEEIR 213 (215)
T ss_pred ---C-CHHHHHHHHHHHHh
Confidence 1 13455666666554
No 340
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.53 E-value=0.17 Score=52.36 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=127.7
Q ss_pred ccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... ..+++|++|.+- +..+..||+-|||...+ +..++.+.++.|..-++.. +++.++..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHHH
Confidence 5999999997652 446789988764 57788999999997664 5677777788876666652 344554321
Q ss_pred h-------C----CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC--CCCCchhHHhhhhcCCCCccccccccc
Q 017718 120 T-------G----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQG 186 (367)
Q Consensus 120 ~-------~----~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~~~~~~~~~p~~~~~~~~~~ 186 (367)
. . ..+.+ +. ...-..++++...+.++..+.|.=+. ++.-...+|++....... ....+..
T Consensus 82 ~I~~vk~~~dim~~~~v~--i~---~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~--~V~dim~ 154 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVT--VT---PDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQ--PVSEVMT 154 (486)
T ss_pred HHHHhhhhhhcccCCCeE--eC---CCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCC--cHHHHcC
Confidence 1 1 01222 21 12234456666666777666553221 000011123221000000 0000000
Q ss_pred -cccCcccc-ccchhhHHHhhhcc---------Ccc----ccHHHHHhhc---------CCCEEEEecC-----CHHHHH
Q 017718 187 -LDLGKMDE-ANDSGLAAYVAGQI---------DRS----LSWKWLQTIT---------KLPILVKGVL-----TAEDAR 237 (367)
Q Consensus 187 -~~~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~~l~~~~---------~~Pv~vK~v~-----~~~~a~ 237 (367)
........ .........+.... +.. ++.+.+.+.. ...+.+...+ +.+.++
T Consensus 155 ~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~ 234 (486)
T PRK05567 155 KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAE 234 (486)
T ss_pred CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHH
Confidence 00000000 00000000000000 000 1222222111 1234444443 257789
Q ss_pred HHHHcCCcEEEEcC-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 238 IAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 238 ~~~~~G~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++|+|.|++.. ||. . ...++.+.++++..+ ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 235 ~L~~agvdvivvD~a~g~-~----~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 235 ALVEAGVDVLVVDTAHGH-S----EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHhCCCEEEEECCCCc-c----hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99999999998864 332 1 235566777766542 688888 99999999999999999999775
No 341
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.53 E-value=4.7 Score=38.75 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=103.3
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ | ++.+.+.||-. +... -+.++++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 35667777433334444445777777788866443 3 33455666532 2222 46677764 34666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++++.++++|++++.+.- |.. ...+ ..++.+ -++.+
T Consensus 88 ai~~a~~a~~~Gadav~~~p--P~y-----------------~~~s-------------~~~i~~----------~f~~v 125 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP--PYL-----------------INGE-------------QEGLYA----------HVEAV 125 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 77888899999999998722 221 0000 000111 12366
Q ss_pred HhhcCCCEEEEec----CCHHHHHHHHH-c-CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 218 QTITKLPILVKGV----LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 218 ~~~~~~Pv~vK~v----~~~~~a~~~~~-~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.+.+++||++=.. .+++...++.+ . .+-+|--+ ...+..+.++.+..++++.|+.-.+. ....
T Consensus 126 ~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds----------~~d~~~~~~~~~~~~~~~~v~~G~~~-~d~~ 194 (296)
T TIGR03249 126 CESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDG----------IGDMEQMIEITQRLGDRLGYLGGMPT-AEVT 194 (296)
T ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEEeCCCc-chhh
Confidence 6677899887643 56787777765 3 23333322 12444455555555445544432111 2334
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
++..+.+||++++.|..-++
T Consensus 195 ~~~~~~~Ga~G~is~~~n~~ 214 (296)
T TIGR03249 195 APAYLPLGVTSYSSAIFNFI 214 (296)
T ss_pred HHHHHhCCCCEEEecHHHhh
Confidence 56778899999998875443
No 342
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.64 Score=43.94 Aligned_cols=79 Identities=27% Similarity=0.461 Sum_probs=53.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHH-HH----HHHHcCCCEEEechHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTD-VF----KALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~d-v~----kal~lGAd~V~ig~~~ 309 (367)
++.+.+.|||.|-+.-.| ..+...++.+.+ .+||+.+||=.. .++ ++ .++..||.++.+||=+
T Consensus 172 aRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 172 ARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred HHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 678999999999874322 225666777777 499999999987 332 22 4556799999999966
Q ss_pred HHHhhccChHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l 328 (367)
... .-++++.+.|..+
T Consensus 241 fQ~---~~p~~m~~Ai~~I 256 (265)
T COG1830 241 FQH---EDPEAMVKAIQAI 256 (265)
T ss_pred hcc---CChHHHHHHHHHH
Confidence 542 2244444444443
No 343
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=94.46 E-value=0.6 Score=42.57 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=68.2
Q ss_pred eecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
|...+-+.+.+-++.++++|++.+++.+-.+ |
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------D 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------C
Confidence 4444556677888888999999998744221 1
Q ss_pred ccccHH---HHHh-hcCCCEEEEec----CCHH-HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcE
Q 017718 210 RSLSWK---WLQT-ITKLPILVKGV----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 210 ~~~~~~---~l~~-~~~~Pv~vK~v----~~~~-~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~v 280 (367)
..++.+ .+.+ .-+.|+++=-. .+++ ..+.+.+.|++.|-.|| |. .......+.|.++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG--g~--~~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG--GA--PTALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST--TS--SSTTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC--CC--CCHHHHHHHHHHHHHHcCCCcEE
Confidence 112222 2222 22566666433 3343 35678899999988754 32 12223456677776666678999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEE
Q 017718 281 FLDGGVRRGTDVFKALA-LGASGI 303 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~-lGAd~V 303 (367)
++-|||+. +.+.+.+. .|+..+
T Consensus 174 m~GgGv~~-~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 174 MPGGGVRA-ENVPELVEETGVREI 196 (201)
T ss_dssp EEESS--T-TTHHHHHHHHT-SEE
T ss_pred EecCCCCH-HHHHHHHHhhCCeEE
Confidence 99999965 44666666 787765
No 344
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.45 E-value=0.53 Score=46.19 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017718 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
+.|....+-...|.+.+.+.++.++++|++.+.||-- .++.+..
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGR-------tr~~kg~----------------------------- 184 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGR-------TREQKGL----------------------------- 184 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecc-------cHHhcCC-----------------------------
Confidence 3567778877899999999999999999998876542 2222200
Q ss_pred HHhhhccCccccHH---HHHhhcC-CCEEEEec-CCHHHHHHHHH-cCCcEEEEc
Q 017718 202 AYVAGQIDRSLSWK---WLQTITK-LPILVKGV-LTAEDARIAVQ-AGAAGIIVS 250 (367)
Q Consensus 202 ~~~~~~~d~~~~~~---~l~~~~~-~Pv~vK~v-~~~~~a~~~~~-~G~d~i~vs 250 (367)
..+..+|+ .||+... +||++=|- .+.+++..+.+ .|+|||.+.
T Consensus 185 ------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 185 ------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred ------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 02334787 6777776 99998774 78999999888 999999874
No 345
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.32 E-value=0.49 Score=41.77 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=46.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC-CCcEEEecCCC--------CHHHHHHHHHcCCCEEEe
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVR--------RGTDVFKALALGASGIFI 305 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~--------~~~dv~kal~lGAd~V~i 305 (367)
.++.+.+.|+++|.+.+ +.+..+++..++ ++||++.=|-. .-+.+.++..+|||++++
T Consensus 18 ~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 36778899999999843 566666666666 79988733332 234455677799999999
Q ss_pred chHHHHH
Q 017718 306 GRPVVYS 312 (367)
Q Consensus 306 g~~~l~~ 312 (367)
..|+.+.
T Consensus 85 ~~~~~~~ 91 (201)
T cd00945 85 VINIGSL 91 (201)
T ss_pred eccHHHH
Confidence 8887654
No 346
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.29 E-value=1.3 Score=42.24 Aligned_cols=85 Identities=25% Similarity=0.536 Sum_probs=55.8
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEe---------
Q 017718 221 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLD--------- 283 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~--------- 283 (367)
++.||.+|-- +++++ ++.+...|-.-|++.-.|-+ +.. -...+..++.+++.. ..+|||+|
T Consensus 129 t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~-fgy~~~~~D~~~ip~mk~~~-t~lPVi~DpSHsvq~p~ 206 (281)
T PRK12457 129 TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSS-FGYDNLVVDMLGFRQMKRTT-GDLPVIFDVTHSLQCRD 206 (281)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-CCCCCcccchHHHHHHHhhC-CCCCEEEeCCccccCCC
Confidence 5788888876 66655 67788889998888765543 211 133455666665532 26899985
Q ss_pred ------cCCCCHH--HHHHHHHcCCCEEEech
Q 017718 284 ------GGVRRGT--DVFKALALGASGIFIGR 307 (367)
Q Consensus 284 ------GGI~~~~--dv~kal~lGAd~V~ig~ 307 (367)
||-|.-- =+..+++.|||++++=.
T Consensus 207 ~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 207 PLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4443322 23467779999999986
No 347
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.28 E-value=0.33 Score=46.60 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=56.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+++++||++.=|=.+-.++++ +-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 466788999999996654422211222 23345556666677899887434334455543 2347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.++++.+.+
T Consensus 108 ~~~---~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAE 124 (292)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555555555433
No 348
>PLN02591 tryptophan synthase
Probab=94.24 E-value=0.88 Score=42.91 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 214 WKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
.+.+|+.+++||++.-- .+.++++.+.+.|+||++|.
T Consensus 181 i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 181 LQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred HHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 34888888999998654 66999999999999999994
No 349
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=94.16 E-value=1 Score=42.86 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=31.3
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.++.|+.+-.- .++++++.+.++|+|+++|.
T Consensus 195 ~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 195 ETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 3888888999999764 56999999999999999994
No 350
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=94.04 E-value=5.5 Score=39.14 Aligned_cols=226 Identities=16% Similarity=0.189 Sum_probs=111.6
Q ss_pred ceEeCcccchhccCChhhH----HHHHHHHHcCCcee-ecCCCCCCHHHHHhhC-CC-ce-----E-----EEEee--cC
Q 017718 73 PIMIAPTAMQKMAHPEGEY----ATARAASAAGTIMT-LSSWSTSSVEEVASTG-PG-IR-----F-----FQLYV--YK 133 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~----~~a~aa~~~G~~~~-vs~~~~~~~e~i~~~~-~~-~~-----~-----~QLy~--~~ 133 (367)
|++||=+|.. | +|++ .+.++|+++|+..+ +=+ ...+++.... +. .+ | +.+|- .-
T Consensus 1 ~~iIAEig~N---H-~Gdl~~A~~lI~~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (329)
T TIGR03569 1 TFIIAEAGVN---H-NGSLELAKKLVDAAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLEL 73 (329)
T ss_pred CEEEEEeCCC---c-cCcHHHHHHHHHHHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCC
Confidence 6788887653 3 3443 68889999998755 222 2333332211 11 11 1 11110 12
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
..+...++.+.+++.|...+.-=.| .+.-|.-..+..|- + +-...++
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd-----~~svd~l~~~~v~~-~--------------------------KIaS~~~~ 121 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFD-----LESADFLEDLGVPR-F--------------------------KIPSGEIT 121 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCC-----HHHHHHHHhcCCCE-E--------------------------EECccccc
Confidence 3456777888888888876642122 11122222221110 0 0001222
Q ss_pred cHHHHHh--hcCCCEEEEecC-CHHH----HHHHHHcCCc---EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 213 SWKWLQT--ITKLPILVKGVL-TAED----ARIAVQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 213 ~~~~l~~--~~~~Pv~vK~v~-~~~~----a~~~~~~G~d---~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
+|..|+. .+++||+++..+ +.++ ++.+.+.|.+ .+.++....+.-......+..++.+++.. .+||..
T Consensus 122 n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~ 199 (329)
T TIGR03569 122 NAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGY 199 (329)
T ss_pred CHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEE
Confidence 3443332 368999999874 4444 4455667875 44442211111111123455666666655 589888
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHH----HHHHHHHHHHHHHHHHHhCC
Q 017718 283 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGC 341 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v----~~~i~~l~~el~~~m~~~G~ 341 (367)
++=-..-.-...|.++||+ +|=+-|-..-...|++.- -+-+..|.++++..-..+|.
T Consensus 200 SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~ 260 (329)
T TIGR03569 200 SDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGD 260 (329)
T ss_pred CCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 6411112333567789999 455544332223343210 12345666667777777774
No 351
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.03 E-value=1.4 Score=42.44 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=77.6
Q ss_pred CCHHHHHHHHH-cCCcEEEEcC---CCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~~-~G~d~i~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V 303 (367)
.++++|+...+ .|+|.+.++. ||-+. ..| -.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 56788877664 7999999974 55432 223 3788999999888 7999998887777 57888999999999
Q ss_pred EechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
=++|.+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 01 1123345566777778888888754
No 352
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=93.94 E-value=6.3 Score=37.91 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=73.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V 303 (367)
.++++|+... +.|+|.+.++. ||-+ .+. -.++.|.+|.+.+ ++|+..=||=.. -+++.|++.+|..-|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5788887655 69999999975 5543 233 3678899999887 789988775444 456778999999999
Q ss_pred EechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
=++|-+..+... +. ..-.....+.+++.++..|+.+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 00 0113334456677777777777754
No 353
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.84 E-value=0.28 Score=48.00 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=49.4
Q ss_pred HHHHHHHH--cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~--~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+-+..+.+ +|+|.|++.-.-|+ .....+.++++++..+ +++||+ |.|-|++-+...+..|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 44666777 59999999653232 2346677888887764 567665 99999999888888999998544
No 354
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=93.65 E-value=6.3 Score=37.20 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=61.8
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcC-----CCCCCCC-C-----ccchHHHHHHHHHHh---cCCCcEEEecCC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLD-Y-----VPATIMALEEVVKAT---QGRIPVFLDGGV 286 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~-----~gg~~~~-~-----~~~~~~~l~~i~~~~---~~~~~via~GGI 286 (367)
-++++-+-.+.+.+.+..+.++|+++|...- +|..++. . +.+....+.++.+.. +.+..|++.+ +
T Consensus 138 ~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS-~ 216 (252)
T cd00439 138 AGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWAS-F 216 (252)
T ss_pred CCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEEe-e
Confidence 4899999999999999999999999888631 1221110 0 113444444554433 2356676644 9
Q ss_pred CCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 287 RRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
++..++.+++ |+|.|-+.-..+..+
T Consensus 217 r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 217 SDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 9999998766 999999988777654
No 355
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=93.64 E-value=7 Score=37.46 Aligned_cols=184 Identities=17% Similarity=0.106 Sum_probs=102.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.++-..+.+.+.+.|+..++ | ++...+.||-. +... -|.+.++- . +-+..
T Consensus 6 ~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~ 83 (289)
T cd00951 6 SFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATA 83 (289)
T ss_pred EEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHH
Confidence 5567777443334444445677778888876442 3 33455666532 2222 35677764 3 66777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.+++++++++|++++.+.. |.. ...+ ..+..+ -++.|.
T Consensus 84 i~~a~~a~~~Gad~v~~~p--P~y-----------------~~~~-------------~~~i~~----------~f~~v~ 121 (289)
T cd00951 84 IAYAQAAEKAGADGILLLP--PYL-----------------TEAP-------------QEGLYA----------HVEAVC 121 (289)
T ss_pred HHHHHHHHHhCCCEEEECC--CCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7899999999999998721 211 0000 001111 123666
Q ss_pred hhcCCCEEEEec----CCHHHHHHHHH-cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH-H
Q 017718 219 TITKLPILVKGV----LTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-V 292 (367)
Q Consensus 219 ~~~~~Pv~vK~v----~~~~~a~~~~~-~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d-v 292 (367)
+.+++||++=.. .+++...++.+ .. ..+-+ .++. ..+..+.++.+..++++.|+. | -.+.++ +
T Consensus 122 ~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p-nivgi-------Kds~-~d~~~~~~~~~~~~~~~~v~~-G-~~~~d~~~ 190 (289)
T cd00951 122 KSTDLGVIVYNRANAVLTADSLARLAERCP-NLVGF-------KDGV-GDIELMRRIVAKLGDRLLYLG-G-LPTAEVFA 190 (289)
T ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHhcCC-CEEEE-------EeCC-CCHHHHHHHHHhcCCCeEEEe-C-CCcchHhH
Confidence 677899988754 46777777776 33 22222 1111 234445555555544454333 3 222233 5
Q ss_pred HHHHHcCCCEEEechHHHH
Q 017718 293 FKALALGASGIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~ 311 (367)
..++.+||++++.|..-++
T Consensus 191 ~~~l~~Ga~G~is~~~n~~ 209 (289)
T cd00951 191 LAYLAMGVPTYSSAVFNFV 209 (289)
T ss_pred HHHHHCCCCEEEechhhhh
Confidence 7788999999988875544
No 356
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=93.48 E-value=0.64 Score=43.32 Aligned_cols=81 Identities=17% Similarity=0.049 Sum_probs=54.9
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.++.+-.+.+...+.+++++++++|+++|.| |+-. |.
T Consensus 135 ~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V--d~~~--------------~g------------------------- 173 (231)
T TIGR00736 135 KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV--DAMY--------------PG------------------------- 173 (231)
T ss_pred CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE--eeCC--------------CC-------------------------
Confidence 467777765445455667888888888888855 3100 00
Q ss_pred HhhhccCccccHH---HHHhhcC-CCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 203 YVAGQIDRSLSWK---WLQTITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~~-~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
.+..+|+ .+++..+ +|||.=+ +.+.++|....++|||+|.+.
T Consensus 174 ------~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 174 ------KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred ------CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 0112465 6667764 8887655 478999999999999999883
No 357
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.47 E-value=0.75 Score=44.37 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=62.1
Q ss_pred cHHHHHhhcCCCEEEEecC--CHH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 213 SWKWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~--~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
+.+.+++..+.|+++-... +++ .++.+.+.|+++|.+.- +....+....++.+.++++.+ ++||++- ++
T Consensus 106 ~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~--~~p~~~~~~~~~~i~~l~~~~--~~pvivK-~v 180 (299)
T cd02809 106 SLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV--DTPVLGRRLTWDDLAWLRSQW--KGPLILK-GI 180 (299)
T ss_pred CHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec--CCCCCCCCCCHHHHHHHHHhc--CCCEEEe-ec
Confidence 3446666556788777652 333 46677889999999842 211111113567788888776 6898885 58
Q ss_pred CCHHHHHHHHHcCCCEEEec
Q 017718 287 RRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig 306 (367)
.+.+++.++..+|||+|.+.
T Consensus 181 ~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 181 LTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 99999999999999999884
No 358
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=93.45 E-value=0.035 Score=49.37 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=76.8
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
..|=|+ .|-..+.+++++++++| +-+++|+|. ..|+. .....-+++
T Consensus 22 ~vfLl~--g~I~~l~~~v~~~~~~g-K~vfVHiDl----------i~Gl~---------------------~D~~~i~~L 67 (175)
T PF04309_consen 22 VVFLLT--GDIGNLKDIVKRLKAAG-KKVFVHIDL----------IEGLS---------------------RDEAGIEYL 67 (175)
T ss_dssp EEEE-S--EECCCHHHHHHHHHHTT--EEEEECCG----------EETB----------------------SSHHHHHHH
T ss_pred EEEEEc--CcHHHHHHHHHHHHHcC-CEEEEEehh----------cCCCC---------------------CCHHHHHHH
Confidence 344343 45555678889998888 456789983 22221 001123344
Q ss_pred hhccCcc--cc--HHHHH--hhcCCCEEEEec----CCHHH-HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH
Q 017718 205 AGQIDRS--LS--WKWLQ--TITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 273 (367)
Q Consensus 205 ~~~~d~~--~~--~~~l~--~~~~~Pv~vK~v----~~~~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~ 273 (367)
.....++ .+ ...++ +..++.-+-+.- .+.+. .+.+.+...|+|-+- .+ -....+.++.+.
T Consensus 68 ~~~~~~dGIISTk~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil-------Pg--~~p~vi~~i~~~ 138 (175)
T PF04309_consen 68 KEYGKPDGIISTKSNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL-------PG--VMPKVIKKIREE 138 (175)
T ss_dssp HHTT--SEEEESSHHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE-------SC--CHHHHHCCCCCC
T ss_pred HHcCCCcEEEeCCHHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc-------hH--HHHHHHHHHHHh
Confidence 4333222 22 22222 223554444442 33444 456678899999882 22 112344444333
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+ ++|||+.|=|++.+|+.++|..||++|.-..+-||
T Consensus 139 ~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 139 T--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp C--SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred c--CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 3 69999999999999999999999999998877665
No 359
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=93.43 E-value=2.3 Score=41.27 Aligned_cols=110 Identities=19% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCc-cchHHHHHHHHHHhcCCCcEEEecCCCCHH---------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGT--------------- 290 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~~~via~GGI~~~~--------------- 290 (367)
.++++|.... +.|+|.+-++- ||-+...+. .-.++.|.+|++.+ ++|+..=||=..+.
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~ 232 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKG 232 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhcccccc
Confidence 5788887766 57999999874 554322122 23678899998887 79999988766665
Q ss_pred -------HHHHHHHcCCCEEEechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 291 -------DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 291 -------dv~kal~lGAd~V~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++.|++.+|..-|=++|-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 233 ~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred ccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999977554221 00 0113334456677777778777754
No 360
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=93.41 E-value=0.25 Score=45.90 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH-----------HHHHHHHcCCCE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 302 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~-----------dv~kal~lGAd~ 302 (367)
..++.+.+.|+|+++++.+ .+..+++..+ .-.++..+||+ +. .+..++..|||.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCE
Confidence 3466778899999988521 1344544443 33457779997 33 467788899999
Q ss_pred EEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 303 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 303 V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
+.+||++..+ .-+ ....+.+++++.
T Consensus 204 iVvGR~I~~a---~dP---~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQA---ADP---AAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCC---CCH---HHHHHHHHHHhh
Confidence 9999988642 122 234555655543
No 361
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=93.39 E-value=0.41 Score=46.50 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=55.2
Q ss_pred CCCceEEEEeecCC--HHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccch
Q 017718 121 GPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (367)
Q Consensus 121 ~~~~~~~QLy~~~d--~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (367)
.+.|..+.+-.+.+ .+.+.+++++++++|+++|.||.-++...
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~----------------------------------- 165 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQR----------------------------------- 165 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCC-----------------------------------
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhc-----------------------------------
Confidence 34567777665555 67788999999999999998877543310
Q ss_pred hhHHHhhhccCccccHH---HHHhhcCCCEEEEe-cCCHHHHHHHHHc-CCcEEEE
Q 017718 199 GLAAYVAGQIDRSLSWK---WLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIV 249 (367)
Q Consensus 199 ~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~-v~~~~~a~~~~~~-G~d~i~v 249 (367)
.....+|+ .+++..++||+.=| +.+.++++...+. |+|+|.+
T Consensus 166 ---------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 166 ---------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp ---------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred ---------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 01233676 66677789998876 4789999987776 9999998
No 362
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.38 E-value=3.4 Score=39.91 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=82.4
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
..+++. ..+++.+.+.++++.+.|++++-+.++...
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~------------------------------------------- 161 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGDL------------------------------------------- 161 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCCh-------------------------------------------
Confidence 344554 467777777788888899999988764210
Q ss_pred hhccCccc-cHHHHHhhcC-CCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC
Q 017718 205 AGQIDRSL-SWKWLQTITK-LPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 276 (367)
Q Consensus 205 ~~~~d~~~-~~~~l~~~~~-~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 276 (367)
+.+. -.+.+|+..+ +++.++.- .+.++ ++.+.+.+++.|-- ...+..++.++++++..
T Consensus 162 ----~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~-- 227 (316)
T cd03319 162 ----EDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS-- 227 (316)
T ss_pred ----hhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC--
Confidence 0001 1225555553 66777654 23344 45566777766631 11234567788887765
Q ss_pred CCcEEEecCCCCHHHHHHHHHc-CCCEEEechH
Q 017718 277 RIPVFLDGGVRRGTDVFKALAL-GASGIFIGRP 308 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~ 308 (367)
++||++++.+.+..|+.+++.. ++|.|++--.
T Consensus 228 ~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 228 PLPIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 7999999999999999999995 5888888643
No 363
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.35 E-value=0.59 Score=43.75 Aligned_cols=104 Identities=24% Similarity=0.379 Sum_probs=64.4
Q ss_pred CceEEEEeecCCHH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
+..|+.|=+-.|+. ...+.++++++. |+..+-+..|.|+.++|-.++.-.+ +|+ ....
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~-vmP--------------lg~p 154 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAA-VMP--------------LGSP 154 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCE-eCC--------------CCcC
Confidence 34677765434332 234566677766 9999878888888777766652111 111 0000
Q ss_pred cchhhHHHhhhccCccccH---HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 196 NDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
-+++ ..-.++ +.+++..++||++-+ +.+++++..+.+.|+|++.+.
T Consensus 155 IGsg---------~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 155 IGSG---------QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred CCCC---------CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 0000 011123 366666789998876 478999999999999999983
No 364
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.32 E-value=0.45 Score=44.58 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=57.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH----HHHHHHHhcCCCcEEEecCCC---CH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGVR---RG 289 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~~via~GGI~---~~ 289 (367)
.+-|+++=++-+.-.|+.+.++|+|+|.++++++. ..|.+.-+++- ++.|.+.+ ...||++|.--. ++
T Consensus 10 ~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~ 88 (240)
T cd06556 10 EKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAP 88 (240)
T ss_pred CCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCH
Confidence 35788888888899999999999999999875432 12333334433 33333333 147999976443 33
Q ss_pred HHH----HHHHHcCCCEEEec
Q 017718 290 TDV----FKALALGASGIFIG 306 (367)
Q Consensus 290 ~dv----~kal~lGAd~V~ig 306 (367)
+++ .+.+..||++|-|-
T Consensus 89 ~~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 89 TAAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHHcCCcEEEEc
Confidence 554 45667899999993
No 365
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=93.31 E-value=2.3 Score=40.04 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=54.8
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCc--cchHHHHHHHHHHhcCCCcEEEe---------
Q 017718 221 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD--------- 283 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~~via~--------- 283 (367)
++.||.+|-- .++++ ++.+...|-+-|++.-.|- .+... ...+..++.+++ . .+|||+|
T Consensus 115 t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~-~--~~PVi~DpSHsvq~pg 190 (258)
T TIGR01362 115 TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMRE-L--GCPVIFDATHSVQQPG 190 (258)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEEeCCccccCCC
Confidence 5778888876 56655 7778888988888875553 33222 224455665554 3 5899995
Q ss_pred ------cCCCCHHH--HHHHHHcCCCEEEech
Q 017718 284 ------GGVRRGTD--VFKALALGASGIFIGR 307 (367)
Q Consensus 284 ------GGI~~~~d--v~kal~lGAd~V~ig~ 307 (367)
||.|.-.- +..++++|||++++=.
T Consensus 191 ~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 191 GLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 55544322 2357889999999976
No 366
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=93.21 E-value=3 Score=40.14 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=.. .+++.|+..+|-.-|=+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887766 57999999874 554421 1123678899999888 799888664333 57778899999999999
Q ss_pred chHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|.+..+... ..+ .-.....+.+++-++..|+.+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654321 111 123344456677777778877754
No 367
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=93.17 E-value=2.4 Score=40.76 Aligned_cols=108 Identities=20% Similarity=0.281 Sum_probs=75.3
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ 304 (367)
.++++|+... +.|+|.+-++. ||-+. +.| -.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~--~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiN 231 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPYK--GEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKIN 231 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeeccccccccC--CCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEE
Confidence 5788887765 57999999975 55432 212 3678899998887 7999998887666 677789999999999
Q ss_pred echHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|-+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 232 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 232 VNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred eccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977543210 01 0123344556677777777777754
No 368
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=93.15 E-value=0.41 Score=44.32 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=43.4
Q ss_pred cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 242 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 242 ~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.|...+.+--.|| .+.|...+.++++.+ ..++|.-||||+++.+.+...+|||.+..|+.+
T Consensus 163 ~g~~~~YlEagsg---a~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~ii 223 (240)
T COG1646 163 LGMPVVYLEAGSG---AGDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTII 223 (240)
T ss_pred hCCeEEEEEecCC---CCCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence 4555565532222 234555566654433 459999999999999999999999999999855
No 369
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=93.10 E-value=0.91 Score=43.20 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=57.3
Q ss_pred HHHhhcCCCEEEEe---cCCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHh----cCCCcEEEecCCC
Q 017718 216 WLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~---v~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~~~via~GGI~ 287 (367)
.+++..+.|.+.|. +.+.+++..+.++| +|+|-+.+.+-.+ ..+....+. ..+.+ ..++.++++|||.
T Consensus 174 ~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~~Sggi~ 249 (281)
T cd00516 174 ALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE---LDPAVLILK-ARAHLDGKGLPRVKIEASGGLD 249 (281)
T ss_pred HHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH---HHHHHHHHH-HHHhhhhcCCCceEEEEeCCCC
Confidence 44444332244443 25688899999999 9999887632111 111111221 11111 1367899999997
Q ss_pred CHHHHHHHHHcCCCEEEechHHH
Q 017718 288 RGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.+.....+|.|.+.+|+.+.
T Consensus 250 -~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 250 -EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred -HHHHHHHHHcCCCEEEeCcccc
Confidence 8888888889999999998664
No 370
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=93.04 E-value=5.9 Score=36.29 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=58.6
Q ss_pred HHHHhhcCCCEEEEecCCH---HHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 215 KWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~~~---~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+++..++||+--...+. .........-+|.+.+...... ...+..-+|+.++.. +...|++..||| |+
T Consensus 91 ~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~----~~~~~~~LAGGL-~p 165 (208)
T COG0135 91 DQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL----RLSKPVMLAGGL-NP 165 (208)
T ss_pred HHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc----cccCCEEEECCC-CH
Confidence 3677766788865554332 2344455566899988764211 112334467777654 126789999998 68
Q ss_pred HHHHHHHHcCC-CEEEech
Q 017718 290 TDVFKALALGA-SGIFIGR 307 (367)
Q Consensus 290 ~dv~kal~lGA-d~V~ig~ 307 (367)
++|.++++++. .+|=+.+
T Consensus 166 ~NV~~ai~~~~p~gvDvSS 184 (208)
T COG0135 166 DNVAEAIALGPPYGVDVSS 184 (208)
T ss_pred HHHHHHHHhcCCceEEecc
Confidence 99999999987 8887777
No 371
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=92.94 E-value=0.67 Score=44.93 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=58.0
Q ss_pred HHHhhcC--CCEEEEecCC----HHHHHHHHHc---CCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---c-CCCcEEE
Q 017718 216 WLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFL 282 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~----~~~a~~~~~~---G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~~~via 282 (367)
..++..+ .|+++ .+-+ .++|..+.++ ++|+|.+.|.+++ .+ -..+.+.++++++ + .++.|++
T Consensus 176 ~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~--~G--~~~~~~~~~~~~l~~~g~~~~~iea 250 (302)
T cd01571 176 AFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR--RG--VFRYLIREVRWALDIRGYKHVKIFV 250 (302)
T ss_pred HHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC--CC--CHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 4444444 45544 3433 3466666666 4899999885532 11 1333344444433 2 4688999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 283 DGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+||| +.+.+.+...+|.|.+.+|+...
T Consensus 251 SGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 251 SGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred eCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 9999 88999999999999999999654
No 372
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.71 E-value=9.5 Score=36.39 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=101.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hhC-C-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~~-~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ |+ +...+.+|-. +.. . -+.++++- ..+.+.+
T Consensus 4 ~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~~ 82 (285)
T TIGR00674 4 TALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEEA 82 (285)
T ss_pred CceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHHH
Confidence 5567776433333444444666777777866443 32 3445655522 222 2 35566653 3355667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++++.|++.|++++.+.. |.. .... ...+.+ -++.+.
T Consensus 83 i~~a~~a~~~Gad~v~v~p--P~y-----------------~~~~-------------~~~i~~----------~~~~i~ 120 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVT--PYY-----------------NKPT-------------QEGLYQ----------HFKAIA 120 (285)
T ss_pred HHHHHHHHHcCCCEEEEcC--CcC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7888999999999998732 221 0000 000111 133666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+.+++||++=.. .+++..+++.+.. ..+-+ .++. .....+.++.+..++++.|+. | ...-
T Consensus 121 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~-~v~gi-------K~s~-~d~~~~~~l~~~~~~~~~v~~-G---~d~~ 187 (285)
T TIGR00674 121 EEVDLPIILYNVPSRTGVSLYPETVKRLAEEP-NIVAI-------KEAT-GNLERISEIKAIAPDDFVVLS-G---DDAL 187 (285)
T ss_pred hcCCCCEEEEECcHHhcCCCCHHHHHHHHcCC-CEEEE-------EeCC-CCHHHHHHHHHhcCCCeEEEE-C---chHH
Confidence 667889887654 4677777777654 32222 1111 123445555555544565544 3 2245
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
.+..+.+||++.+.|...++
T Consensus 188 ~~~~~~~G~~G~i~~~~~~~ 207 (285)
T TIGR00674 188 TLPMMALGGKGVISVTANVA 207 (285)
T ss_pred HHHHHHcCCCEEEehHHHhh
Confidence 67788999999998876544
No 373
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.46 E-value=1 Score=42.15 Aligned_cols=107 Identities=22% Similarity=0.374 Sum_probs=64.9
Q ss_pred CceEEEEeecCCHH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
+..|+.|=+-.|+. ...+.+++++.. |+..+-+..|.|+.++|-.++.-.+ +|+ ....
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~-vmP--------------lg~p 154 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAA-VMP--------------LGAP 154 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCE-eCC--------------CCcC
Confidence 44688775433322 244566777766 9999877888888777766663111 111 0000
Q ss_pred cchhhHHHhhhccCccccHHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 196 NDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
-+++.+ + .++. ..+.+++..++||++-+. .+++++..+.+.|+|++.+.
T Consensus 155 IGsg~g--i---~~~~-~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 155 IGSGLG--L---LNPY-NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CCCCCC--C---CCHH-HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 001000 0 0111 133666667899988764 78999999999999999983
No 374
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.38 E-value=3.5 Score=39.02 Aligned_cols=83 Identities=29% Similarity=0.405 Sum_probs=54.5
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEe---------
Q 017718 221 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLD--------- 283 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~--------- 283 (367)
++.||.+|-- .++++ ++.+...|-.-|++.-.|- .+.... ..+..++.+++ . .+|||+|
T Consensus 123 t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp~~k~-~--~lPVi~DpSHsvq~pg 198 (264)
T PRK05198 123 TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLPIMRE-T--GAPVIFDATHSVQLPG 198 (264)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhHHHhh-C--CCCEEEeCCccccCCC
Confidence 5788888876 56655 6778888988888875553 332221 24455665543 3 4899995
Q ss_pred ------cCCCCHHH--HHHHHHcCCCEEEech
Q 017718 284 ------GGVRRGTD--VFKALALGASGIFIGR 307 (367)
Q Consensus 284 ------GGI~~~~d--v~kal~lGAd~V~ig~ 307 (367)
||-|.--- +..++++|||++++=.
T Consensus 199 ~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 199 GQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 45444322 3367789999999975
No 375
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=92.33 E-value=1.7 Score=42.33 Aligned_cols=84 Identities=10% Similarity=0.226 Sum_probs=56.5
Q ss_pred CceEEEEeecC-CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017718 123 GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 123 ~~~~~QLy~~~-d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
-|.++.+-.+. +.+...++++.++++|+++|.|+-.+.. +++.
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y~--------------------------- 177 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGYR--------------------------- 177 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCCC---------------------------
Confidence 36777764432 3344678889999999999988643211 0110
Q ss_pred HHhhhccCccccHH---HHHhhcCCCEEEEec-CCHHHHHHHH-HcCCcEEEE
Q 017718 202 AYVAGQIDRSLSWK---WLQTITKLPILVKGV-LTAEDARIAV-QAGAAGIIV 249 (367)
Q Consensus 202 ~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v-~~~~~a~~~~-~~G~d~i~v 249 (367)
-+..+|+ .+++..++||+.=+- .++++++.+. +.|+|+|.+
T Consensus 178 -------g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 178 -------AEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred -------CCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 1122565 777888999887664 7899998876 588999998
No 376
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=92.22 E-value=11 Score=36.15 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
++...++|||+|.+- + ++.+.+.+.++.+.++. ++|++...+-.-...+.+.-.+|.+.|..|..++++
T Consensus 175 a~ay~eAGAD~ifv~--~------~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 175 AEAYAEAGADGIMIH--S------RKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred HHHHHHcCCCEEEec--C------CCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 678899999999983 2 12345556666666543 468876543111123555667899999999877664
No 377
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.22 E-value=1.2 Score=44.03 Aligned_cols=100 Identities=22% Similarity=0.191 Sum_probs=60.4
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
-|.++.|-+..+.+.+.++++.++++|+++|.++-..+.. . ++. -+. ..+ ..+.-++..
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~~~----~~~---~~~---------~~gg~SG~~- 270 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-GLK----GLP---NAD---------EAGGLSGRP- 270 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-ccc----ccc---cCC---------CCCCcccHH-
Confidence 4788888755555567889999999999999886543210 0 010 000 000 000000000
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEE-EEecCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~-vK~v~~~~~a~~~~~~G~d~i~v 249 (367)
.....|+ .+++.. ++||+ +.++.+.+++.....+|||+|.+
T Consensus 271 ------~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 271 ------LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQI 317 (344)
T ss_pred ------HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHH
Confidence 0112343 667777 68987 44568999999999999999877
No 378
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=92.19 E-value=4.6 Score=38.91 Aligned_cols=111 Identities=25% Similarity=0.327 Sum_probs=75.9
Q ss_pred CCHHHHHHH-HHcCCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHcCCCEEE
Q 017718 231 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~-~~~G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~-dv~kal~lGAd~V~ 304 (367)
.++++|+.. .+.|+|.+.++- ||.+.....| -.++.|.+|.+.++ ++|+..=||=..+. ++.|++.+|..-|=
T Consensus 155 TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiN 233 (287)
T PF01116_consen 155 TDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKIN 233 (287)
T ss_dssp SSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEE
Confidence 568887765 699999999974 5643321122 26788999998774 69999988766555 88899999999999
Q ss_pred echHHHHHhhc-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G-----~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|-+..+... +. + .-.....+.+++.++..|..+|..
T Consensus 234 i~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 234 IGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp ESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654321 11 1 223445566777788888888864
No 379
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.16 E-value=2.1 Score=40.74 Aligned_cols=152 Identities=24% Similarity=0.228 Sum_probs=82.3
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCC---C----------CHHHH----HhhCCCceEEEEeecC
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST---S----------SVEEV----ASTGPGIRFFQLYVYK 133 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~---~----------~~e~i----~~~~~~~~~~QLy~~~ 133 (367)
..|++++ +.+. .++.-...++.+.+.|+.++-=+++. . .+.++ .+...-|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676655 3322 12222467888888887755321211 0 11222 2222346777776556
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
+.+.+.++++.++++|++++.++-..... ..+... ..|. ... . ....++ .. .....
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~---~~~--------~-~~g~sg--~~-----~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPG---PKR--------G-TGGLSG--AP-----IRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--Cccc---cCC--------C-CCccCc--HH-----HHHHH
Confidence 66678899999999999999886432210 000000 0000 000 0 000000 00 01123
Q ss_pred HH---HHHhhc--CCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 214 WK---WLQTIT--KLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 214 ~~---~l~~~~--~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
|+ .+++.. ++||+.-+. .+.+++..+.++|||++.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 33 677777 789887664 67999999999999999883
No 380
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=92.04 E-value=0.94 Score=42.39 Aligned_cols=84 Identities=31% Similarity=0.378 Sum_probs=56.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCC----CCCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCC-HH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA----RQLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-GT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg----~~~~~~~~~~----~~l~~i~~~~~~~~~via~G--GI~~-~~ 290 (367)
+.|+++-++-+.-.|+.+.++|.+++.+|+++= ...|.+.-++ +.+++|.+.+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 379999999999999999999999999986421 1245444333 3455566655 89999965 6666 44
Q ss_pred H----HHHHHHcCCCEEEech
Q 017718 291 D----VFKALALGASGIFIGR 307 (367)
Q Consensus 291 d----v~kal~lGAd~V~ig~ 307 (367)
+ +.+...+||.++.|--
T Consensus 86 ~v~~tv~~~~~aG~agi~IED 106 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIED 106 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEeec
Confidence 4 4455668999998843
No 381
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.00 E-value=0.8 Score=44.02 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=59.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~~via~G--GI~~~~d 291 (367)
+.|+++-++-+.-.|+.+.++|.+++.+|+++=. ..|.+.-++ +.+.+|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4588888888999999999999999999875311 134333333 3345555544 79999964 8888888
Q ss_pred H----HHHHHcCCCEEEec
Q 017718 292 V----FKALALGASGIFIG 306 (367)
Q Consensus 292 v----~kal~lGAd~V~ig 306 (367)
+ .++..+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34555899998883
No 382
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.97 E-value=3.8 Score=40.04 Aligned_cols=183 Identities=21% Similarity=0.174 Sum_probs=95.9
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCcee---ecCCCCC------CH----HH----HHhhCCCceEEEEeecC
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWSTS------SV----EE----VASTGPGIRFFQLYVYK 133 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~---vs~~~~~------~~----e~----i~~~~~~~~~~QLy~~~ 133 (367)
..|++++=+ +. .++.-..+++.+.++|+.+. +|..... .. .+ +.+...-|.++.|-+
T Consensus 99 ~~pvi~si~-g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLN-GV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeC-CC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 568776633 22 22333578888888886554 2221110 11 12 222233578888753
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
+.+.+.++++.++++|+++++++--.+... -|..+.-..+ . ...++.. + ..-.+.
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~---id~~~~~~~~-----~------------~glSG~~--~---~~~al~ 227 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQPD---IDLETLEVVP-----N------------LLLSSPA--E---IRLPLR 227 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCCC---ccccccceec-----C------------CCcCCcc--c---hhHHHH
Confidence 333467788899999999998854432210 0110000000 0 0000000 0 001123
Q ss_pred HH-HHHhhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEEcCCCCCC-CCCccchH-HHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 214 WK-WLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQ-LDYVPATI-MALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 214 ~~-~l~~~~~~Pv~vK-~v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~~~~~~~-~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
|- .+++..++||+.- ++.+.+||.....+|||++-+. +. +..|+... +.+.++.+++. .-|+.+-
T Consensus 228 ~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~----ta~~~~gp~~~~~i~~~L~~~l~-------~~g~~~i 296 (325)
T cd04739 228 WIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTT----SALLRHGPDYIGTLLAGLEAWME-------EHGYESV 296 (325)
T ss_pred HHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEe----hhhhhcCchHHHHHHHHHHHHHH-------HcCCCCH
Confidence 32 5666678998854 4689999999999999999984 22 22344332 23444444331 3567777
Q ss_pred HHHHHH
Q 017718 290 TDVFKA 295 (367)
Q Consensus 290 ~dv~ka 295 (367)
.|+.-.
T Consensus 297 ~e~~G~ 302 (325)
T cd04739 297 QQLRGS 302 (325)
T ss_pred HHHhcc
Confidence 776543
No 383
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.78 E-value=0.88 Score=43.90 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=58.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCC--C---CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA--R---QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg--~---~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~~~~ 290 (367)
+.|+++-++-+.-.|+.+.++|.++|.+|+++= . ..|.+.-+++ .+.+|.+.+ ++||++|. |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 568888888899999999999999999987431 1 1344443333 344445544 79999965 777888
Q ss_pred HH----HHHHHcCCCEEEe
Q 017718 291 DV----FKALALGASGIFI 305 (367)
Q Consensus 291 dv----~kal~lGAd~V~i 305 (367)
.+ .++...||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3445589998888
No 384
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=91.72 E-value=4.3 Score=38.37 Aligned_cols=36 Identities=36% Similarity=0.494 Sum_probs=31.1
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.++.||++-+. .++++++.+.++|+|++++.
T Consensus 191 ~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 191 KRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4888888899999775 46999999999999999983
No 385
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=91.65 E-value=0.55 Score=43.64 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=53.9
Q ss_pred CHHH-HHH-HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 232 TAED-ARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 232 ~~~~-a~~-~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+.++ ++. ....++|+++++|+. .+.++..+.|..+.+.. ++||++.+|+ +.+.+.+.|.. ||++.+|+.+
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~l 235 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSL 235 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEE
Confidence 4443 344 566779999998732 25577888898888777 5999998887 56778888887 9999999966
Q ss_pred H
Q 017718 310 V 310 (367)
Q Consensus 310 l 310 (367)
=
T Consensus 236 K 236 (263)
T COG0434 236 K 236 (263)
T ss_pred c
Confidence 3
No 386
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=91.49 E-value=14 Score=35.66 Aligned_cols=184 Identities=18% Similarity=0.128 Sum_probs=102.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+...+.|+..++ | ++...+.||-. +... -|.+.++- . +-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 46677887544434444445677777778876443 3 33556666522 2222 35666763 3 6667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
+.++++.++++|++++.+.- |.. ...+ ..+..+ -++.+
T Consensus 90 ~i~~~~~a~~~Gadav~~~p--P~y-----------------~~~~-------------~~~i~~----------~f~~v 127 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLP--PYL-----------------TEAP-------------QEGLAA----------HVEAV 127 (303)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 77889999999999998722 221 0000 000111 12366
Q ss_pred HhhcCCCEEEEec----CCHHHHHHHH-HcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HH
Q 017718 218 QTITKLPILVKGV----LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GT 290 (367)
Q Consensus 218 ~~~~~~Pv~vK~v----~~~~~a~~~~-~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~ 290 (367)
.+.+++||++=.. .+++...++. +.. +-+|--+ ......+.++.+..++++.|+ +| ..+ -.
T Consensus 128 a~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s----------~~d~~~~~~~~~~~~~~f~vl-~G-~d~~e~ 195 (303)
T PRK03620 128 CKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDG----------VGDIELMQRIVRALGDRLLYL-GG-LPTAEV 195 (303)
T ss_pred HHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEE-eC-CCcchh
Confidence 6778899887643 4677777776 542 2222221 123445555655555455544 33 211 23
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
-+..++.+||++...+..-++
T Consensus 196 ~~~~~~~~G~~G~is~~an~~ 216 (303)
T PRK03620 196 FAAAYLALGVPTYSSAVFNFV 216 (303)
T ss_pred hHHHHHhCCCCEEEecHHhhh
Confidence 345677899999988775543
No 387
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.21 E-value=1.5 Score=41.24 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE-----ecCCCCH--------HHHHHHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFKALA 297 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via-----~GGI~~~--------~dv~kal~ 297 (367)
.+.++|..|.+.|||-|-+... ....+-.|+...+..+++.+ ++||.+ .|++... .|+..+..
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~--L~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAA--PKEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccC--cCCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999987431 11112246777788887766 688877 5555433 35666677
Q ss_pred cCCCEEEech
Q 017718 298 LGASGIFIGR 307 (367)
Q Consensus 298 lGAd~V~ig~ 307 (367)
+|||+|.+|-
T Consensus 85 ~GadGvV~G~ 94 (248)
T PRK11572 85 LGFPGLVTGV 94 (248)
T ss_pred cCCCEEEEee
Confidence 8999999994
No 388
>PLN02535 glycolate oxidase
Probab=91.15 E-value=1.6 Score=43.51 Aligned_cols=91 Identities=19% Similarity=0.313 Sum_probs=62.5
Q ss_pred cHHHHHhhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEcC----CCCCC--------------CC----------
Q 017718 213 SWKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGARQ--------------LD---------- 258 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~------~~~~a~~~~~~G~d~i~vs~----~gg~~--------------~~---------- 258 (367)
+++.+.+..+.|.+...-. +.+..+++.++|+.+|++.- .|.|. +.
T Consensus 114 slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 193 (364)
T PLN02535 114 TVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSD 193 (364)
T ss_pred CHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcc
Confidence 3456665555677777642 23457889999999999842 12110 00
Q ss_pred -------------CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 259 -------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 259 -------------~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
....+|+.|..+++.. ++|||+ .||.+++|+.++..+|+|+|.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 194 KGSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred ccccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123567777777655 789888 67999999999999999999885
No 389
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=91.12 E-value=6.8 Score=37.51 Aligned_cols=83 Identities=28% Similarity=0.323 Sum_probs=52.1
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCc--cchHHHHHHHHHHhcCCCcEEEe---------
Q 017718 221 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD--------- 283 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~~via~--------- 283 (367)
++.||.+|-- .++++ ++++...|-+-|++.-.|- .+... ...+..++.+++ . .+|||+|
T Consensus 129 tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~-tFgy~~lv~D~r~ip~mk~-~--~lPVI~DpSHsvQ~pg 204 (290)
T PLN03033 129 TGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-A--NCPVVADITHSLQQPA 204 (290)
T ss_pred cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEEeCCccccCCC
Confidence 5678888865 44554 6777888888888875553 33211 134455665543 3 6899985
Q ss_pred -----------cCCCCHH--HHHHHHHcCCCEEEech
Q 017718 284 -----------GGVRRGT--DVFKALALGASGIFIGR 307 (367)
Q Consensus 284 -----------GGI~~~~--dv~kal~lGAd~V~ig~ 307 (367)
||-|.-- =+..|+++|||++++=.
T Consensus 205 ~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 205 GKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3333322 23467789999999976
No 390
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=91.12 E-value=14 Score=35.12 Aligned_cols=181 Identities=21% Similarity=0.244 Sum_probs=100.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-..+.|+...+ ++ +.+.+.+|-. +..+ -+.+.++- ..+-+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 4556676433333333444677777788876443 32 3345555422 2222 35677764 4567777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccH-HHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-KWL 217 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~l 217 (367)
.++++.++++|++++.+.- |.. .... ...+ +.| +.+
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~-----------------~~~s-------------~~~l-----------~~y~~~i 122 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYY-----------------FKPS-------------QEEL-----------IDYFRAI 122 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STS-----------------SSCC-------------HHHH-----------HHHHHHH
T ss_pred HHHHHHHhhcCceEEEEec--ccc-----------------ccch-------------hhHH-----------HHHHHHH
Confidence 8899999999999998743 321 0000 0001 122 366
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+.+++|+++=.. .+++...++.+.. +-+|..+ . .++..+.++.+....++.|+ .| +.
T Consensus 123 a~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s---------~-~~~~~~~~~~~~~~~~~~v~-~G---~d 188 (289)
T PF00701_consen 123 ADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDS---------S-GDLERLIQLLRAVGPDFSVF-CG---DD 188 (289)
T ss_dssp HHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEES---------S-SBHHHHHHHHHHSSTTSEEE-ES---SG
T ss_pred HhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcC---------c-hhHHHHHHHhhhcccCeeee-cc---cc
Confidence 6778999998765 3567777776632 2222221 1 12344445555555566554 44 44
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
..+..++.+|+++++.+...++
T Consensus 189 ~~~~~~l~~G~~G~is~~~n~~ 210 (289)
T PF00701_consen 189 ELLLPALAAGADGFISGLANVF 210 (289)
T ss_dssp GGHHHHHHTTSSEEEESGGGTH
T ss_pred ccccccccccCCEEEEcccccC
Confidence 5578999999999999986543
No 391
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=90.98 E-value=5 Score=39.65 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=77.5
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc----chHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 289 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~------------- 289 (367)
.++++|+... +.|+|.+.++. ||-+.....| -.++.|.+|.+.++ ++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhccc
Confidence 5788887665 57999999874 5544221112 46788999988772 5999998875554
Q ss_pred ---------HHHHHHHHcCCCEEEechHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCCC
Q 017718 290 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCRS 343 (367)
Q Consensus 290 ---------~dv~kal~lGAd~V~ig~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~s 343 (367)
+++.|++.+|..-|=++|-+..+... ..+ .-.....+.+++.++..|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976554211 111 1233445667788888888888653
No 392
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.89 E-value=1.8 Score=42.36 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=55.1
Q ss_pred CceEEEEeecCCHHH--HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhh
Q 017718 123 GIRFFQLYVYKDRNV--VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~--~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
-|..+.+-.+.|... ..++++.++++|++++.||.-+...
T Consensus 137 iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~-------------------------------------- 178 (323)
T COG0042 137 IPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQ-------------------------------------- 178 (323)
T ss_pred CCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHh--------------------------------------
Confidence 356666655554443 5567777778888887776643221
Q ss_pred HHHhhhccCccccHH---HHHhhcC-CCEEEEec-CCHHHHHHHHH-cCCcEEEE
Q 017718 201 AAYVAGQIDRSLSWK---WLQTITK-LPILVKGV-LTAEDARIAVQ-AGAAGIIV 249 (367)
Q Consensus 201 ~~~~~~~~d~~~~~~---~l~~~~~-~Pv~vK~v-~~~~~a~~~~~-~G~d~i~v 249 (367)
+. ..+.+|+ .+|+..+ +||+.=+- .+.++|+...+ .|+|++.+
T Consensus 179 ----~y--~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 179 ----GY--LGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred ----cC--CCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 00 1124676 6777777 89988764 78999988776 57999998
No 393
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=90.88 E-value=5.1 Score=39.56 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=77.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc----chHHHHHHHHHHhcCCCcEEEecCCC---------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVR--------------- 287 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~~via~GGI~--------------- 287 (367)
.++++|+... +.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5788887765 68999999875 5544221112 36788999988773 58988866543
Q ss_pred -------CHHHHHHHHHcCCCEEEechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017718 288 -------RGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 343 (367)
Q Consensus 288 -------~~~dv~kal~lGAd~V~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~s 343 (367)
.-+++.|++.+|..-|=++|-+..+... .. ..-.....+.+++.++..|+.+|...
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4477899999999999999977554321 01 11233445667888888899998653
No 394
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.66 E-value=1.4 Score=40.10 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE-----ecCCCCH--------HHHHHHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFKALA 297 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via-----~GGI~~~--------~dv~kal~ 297 (367)
.+.+++..+.+.|||-|-+-.+ ....+-.|+...+..+++.. ++||.+ .|+.... +|+..+..
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSN--LEVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBT--GGGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCC--ccCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999998542 11112246777888888766 788887 4444332 46667778
Q ss_pred cCCCEEEech
Q 017718 298 LGASGIFIGR 307 (367)
Q Consensus 298 lGAd~V~ig~ 307 (367)
+|||++.+|-
T Consensus 84 ~GadG~VfG~ 93 (201)
T PF03932_consen 84 LGADGFVFGA 93 (201)
T ss_dssp TT-SEEEE--
T ss_pred cCCCeeEEEe
Confidence 9999999994
No 395
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=90.65 E-value=17 Score=36.63 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=61.3
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-------------CccchHHHHHHHHHHhc---CCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ---GRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~~---~~~~via~G 284 (367)
-++++-+-.+.+.+.|..+.++|++.|... =||-.+ ..-+....+.+|.+..+ .+..|++ .
T Consensus 153 ~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~-A 229 (391)
T PRK12309 153 EGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMG-A 229 (391)
T ss_pred CCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEe-c
Confidence 388998888999999999999999988763 232111 11124445556655442 2455555 4
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
.+|+..++.+ .+|||.+-|.-.++..+
T Consensus 230 SfRn~~~v~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 230 SFRNIGEIIE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred ccCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence 5999999998 47999999987776554
No 396
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=90.53 E-value=6.5 Score=37.03 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+..+.+.+.|++.|-.|| |. .......+.|.++.+..++.+ |++-|||+ .+.+.+....|+..+=..
T Consensus 132 ~al~~l~~lG~~rILTSG--g~--~~a~~g~~~L~~lv~~a~~~~-Im~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 132 NALKQLADLGVARILTSG--QQ--QDAEQGLSLIMELIAASDGPI-IMAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred HHHHHHHHcCCCEEECCC--CC--CCHHHHHHHHHHHHHhcCCCE-EEeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 345678999999987754 32 112233455666655544334 66666765 566777778999877543
No 397
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=90.48 E-value=10 Score=34.83 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=31.5
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
++++...+|++.-+..+.+.+..+.++|+++|.+.
T Consensus 152 ~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 152 EIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 67777779999999999999999999999999984
No 398
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=90.43 E-value=2.5 Score=37.80 Aligned_cols=83 Identities=25% Similarity=0.199 Sum_probs=55.1
Q ss_pred HHHHhh-cCCCEEE--EecCC-HHHHHHHHHcCCcEEEEcCCCCCCCCCccch-HHHHHHHHHHhcCCCcEEEe-cCCCC
Q 017718 215 KWLQTI-TKLPILV--KGVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD-GGVRR 288 (367)
Q Consensus 215 ~~l~~~-~~~Pv~v--K~v~~-~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~~via~-GGI~~ 288 (367)
+.+++. .++|+++ |.... ...++.+.++|+|+|+++... .+.. .+.+..+++ . .++++++ =+..|
T Consensus 45 ~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~------~~~~~~~~i~~~~~-~--g~~~~v~~~~~~t 115 (202)
T cd04726 45 RALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA------PLSTIKKAVKAAKK-Y--GKEVQVDLIGVED 115 (202)
T ss_pred HHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC------CHHHHHHHHHHHHH-c--CCeEEEEEeCCCC
Confidence 466665 4788877 43322 245788999999999994311 1111 223333332 2 5777765 77999
Q ss_pred HHHHHHHHHcCCCEEEec
Q 017718 289 GTDVFKALALGASGIFIG 306 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig 306 (367)
+.++.+++..|+|.|.++
T Consensus 116 ~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 116 PEKRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999888999999885
No 399
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.34 E-value=0.97 Score=43.66 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=58.9
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC-----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~~~via~G--GI~~~~ 290 (367)
+.|+++-++-+.-.|+.+.++|.+++.+|+++.. ..|.+.-++ +.+.+|.+.+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4688888888999999999999999999764321 134444333 3344555544 79999965 777777
Q ss_pred HH----HHHHHcCCCEEEec
Q 017718 291 DV----FKALALGASGIFIG 306 (367)
Q Consensus 291 dv----~kal~lGAd~V~ig 306 (367)
++ .++...||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 75 45556899999883
No 400
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=90.34 E-value=5.8 Score=39.21 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=76.8
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc----chHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 289 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~------------- 289 (367)
.++++|.... +.|+|.+-++. ||-+.....| -.++.|.+|.+.+. ++|+..=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5788887766 57999999874 5544221112 35778999988772 5999998765544
Q ss_pred ---------HHHHHHHHcCCCEEEechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017718 290 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 343 (367)
Q Consensus 290 ---------~dv~kal~lGAd~V~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~s 343 (367)
+++.|++.+|-.-|=++|-+..+... .. ..-.....+.+++-++..|+.+|...
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976544221 11 01233444567777888888888654
No 401
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=90.28 E-value=4.9 Score=37.28 Aligned_cols=121 Identities=17% Similarity=0.295 Sum_probs=72.0
Q ss_pred eecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
|...+.+.+.+-++.++++|++++++.+-++-
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~d------------------------------------------------ 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALTAD------------------------------------------------ 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeecCC------------------------------------------------
Confidence 43344567888889999999999987543221
Q ss_pred ccccH---HHHHh-hcCCCEEEEec----CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcE
Q 017718 210 RSLSW---KWLQT-ITKLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 210 ~~~~~---~~l~~-~~~~Pv~vK~v----~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~v 280 (367)
..++- +.|.+ ..+++|..--- .++ +..+.+.+.|+.-|-. |||. ....-..+.|.++.+..++++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILT--sGg~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILT--SGGK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEec--CCCc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 11111 12222 22455554432 334 4467899999998876 4553 23333445566666655668888
Q ss_pred EEecCCCCHHHHHHH-HHcCCCEE
Q 017718 281 FLDGGVRRGTDVFKA-LALGASGI 303 (367)
Q Consensus 281 ia~GGI~~~~dv~ka-l~lGAd~V 303 (367)
++-|||+. +.+... ...|+.-+
T Consensus 175 m~GaGV~~-~N~~~l~~~tg~~e~ 197 (241)
T COG3142 175 MAGAGVRA-ENIAELVLLTGVTEV 197 (241)
T ss_pred EeCCCCCH-HHHHHHHHhcCchhh
Confidence 88778764 556655 45776543
No 402
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=90.15 E-value=1.2 Score=39.37 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
...+.+.++|+|-+ +.+ -....+.++.+.. ..|||+-|=|++-+|+..||..||-+|.-.
T Consensus 114 ~~~i~~~~pD~iEv-------LPG--v~Pkvi~~i~~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs 173 (181)
T COG1954 114 IKQIEKSEPDFIEV-------LPG--VMPKVIKEITEKT--HIPIIAGGLIETEEEVREALKAGAVAVSTS 173 (181)
T ss_pred HHHHHHcCCCEEEE-------cCc--ccHHHHHHHHHhc--CCCEEeccccccHHHHHHHHHhCcEEEeec
Confidence 45566799999988 222 2334566666655 799999999999999999999999998644
No 403
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=89.79 E-value=2 Score=40.58 Aligned_cols=70 Identities=26% Similarity=0.339 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+.|+...++||++|.|-. ....-..+++.|..+++.+ ++||..--=|-++.++.++-.+|||+|.+=-.+
T Consensus 72 ~~a~~y~~~GA~aiSVlT----e~~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLT----EPKFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp HHHHHHHHTT-SEEEEE------SCCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEEC----CCCCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 558889999999999842 1112234778888888877 799999888999999999999999999875544
No 404
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=89.75 E-value=8.3 Score=37.89 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=54.0
Q ss_pred hhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-
Q 017718 219 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA- 297 (367)
Q Consensus 219 ~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~- 297 (367)
+..+++++ -...+.+.+..+.+.|++.+-|.. .-...+.+|..+.+. ..|||.+-|..+-+++..++.
T Consensus 86 ~~~Gi~~~-stpfd~~svd~l~~~~v~~~KIaS-------~~~~n~pLL~~~A~~---gkPvilStGmatl~Ei~~Av~~ 154 (329)
T TIGR03569 86 ESKGIEFL-STPFDLESADFLEDLGVPRFKIPS-------GEITNAPLLKKIARF---GKPVILSTGMATLEEIEAAVGV 154 (329)
T ss_pred HHhCCcEE-EEeCCHHHHHHHHhcCCCEEEECc-------ccccCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHH
Confidence 34577774 466889999999999999999832 123356677777552 689999999999999988775
Q ss_pred ---cCCC
Q 017718 298 ---LGAS 301 (367)
Q Consensus 298 ---lGAd 301 (367)
.|.+
T Consensus 155 i~~~G~~ 161 (329)
T TIGR03569 155 LRDAGTP 161 (329)
T ss_pred HHHcCCC
Confidence 3664
No 405
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.69 E-value=20 Score=34.39 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=101.3
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHH-cCCcee--ec---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASA-AGTIMT--LS---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRN 136 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~-~G~~~~--vs---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~ 136 (367)
.|.++.|+.-.+-.+.++-..+.+-+.+ .|+..+ .+ ++.+.+.||-. +..+ -+.++++- ..+-+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 3666778754444444555577777777 886543 23 33456666532 2222 35666764 34566
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHH
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKW 216 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (367)
...++++.|++.|++++.+.. |.. .++ + ...+.+ -++.
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~--P~y------------~~~--~----------------~~~l~~----------~f~~ 124 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT--PFY------------YPF--S----------------FEEICD----------YYRE 124 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC--CcC------------CCC--C----------------HHHHHH----------HHHH
Confidence 677888999999999998732 221 000 0 000111 1235
Q ss_pred HHhhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017718 217 LQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288 (367)
Q Consensus 217 l~~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~ 288 (367)
+.+.+++||++=.. .+++...++.+.. +-+|.-+ . ..+..+.++.+..+ +..| .+| +
T Consensus 125 va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s---------~-~d~~~~~~~~~~~~-~~~v-~~G---~ 189 (293)
T PRK04147 125 IIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQT---------A-GDLYQLERIRKAFP-DKLI-YNG---F 189 (293)
T ss_pred HHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeC---------C-CCHHHHHHHHHhCC-CCEE-EEe---e
Confidence 66667899988764 4567777776532 2222221 1 13344445554443 4444 344 2
Q ss_pred HHHHHHHHHcCCCEEEechHH
Q 017718 289 GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~ 309 (367)
..-++..+.+|+++++.+..-
T Consensus 190 d~~~~~~l~~G~~G~is~~~n 210 (293)
T PRK04147 190 DEMFASGLLAGADGAIGSTYN 210 (293)
T ss_pred hHHHHHHHHcCCCEEEechhh
Confidence 345677888999999877643
No 406
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=89.58 E-value=3.1 Score=40.55 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=63.0
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC-------------ccchHHHHHHHHHHh---cCCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT---QGRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~~~via~G 284 (367)
-++++-+-.+.+.+.+..+.++|++.|... =||-.|+ .-+-...+.++.+.. +.+..|+ ..
T Consensus 147 ~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vm-aA 223 (313)
T cd00957 147 EGIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVM-GA 223 (313)
T ss_pred CCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEE-ec
Confidence 389999989999999999999999988763 1221111 113444555555443 2244455 45
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
.+|+..++.+ .+|+|.+-+.-.++..+..
T Consensus 224 SfRn~~~v~~--laG~d~~Ti~p~ll~~L~~ 252 (313)
T cd00957 224 SFRNIGQILA--LAGCDYLTISPALLEELKN 252 (313)
T ss_pred ccCCHHHHHH--HhCCCeEEcCHHHHHHHHh
Confidence 6999999997 5799999999888776643
No 407
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=89.53 E-value=2 Score=40.60 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.|+...++||++|.+..... .-....+.|..+++.+ ++||+.--=|..+.++..+..+|||+|.+.-..
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 4668899999999998843211 1112367777887776 799998777889999999999999999887544
No 408
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=89.52 E-value=1.5 Score=41.01 Aligned_cols=82 Identities=28% Similarity=0.356 Sum_probs=56.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH----HHHHHHHhcCCCcEEEecCC--CCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGV--RRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~~via~GGI--~~~~d 291 (367)
+.|+++=++-+.-.|+.+.++|+|+|.+++++.. ..|.+..+++. +..|.+.. .+||++|+.. .+..+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 5688888888889999999999999999875432 13444444433 33444433 7999998755 34344
Q ss_pred H----HHHHHcCCCEEEe
Q 017718 292 V----FKALALGASGIFI 305 (367)
Q Consensus 292 v----~kal~lGAd~V~i 305 (367)
+ .+.+..|+++|.|
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3445589999999
No 409
>PTZ00411 transaldolase-like protein; Provisional
Probab=89.40 E-value=4.1 Score=40.06 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=63.8
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC-------------ccchHHHHHHHHHHhc--CCCcEEEecC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKATQ--GRIPVFLDGG 285 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~~--~~~~via~GG 285 (367)
-++++-+-.+.+...|..+.++|++.|... =||-.|+ +.+-...+.++.+..+ +--..|....
T Consensus 159 eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~AS 236 (333)
T PTZ00411 159 EGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGAS 236 (333)
T ss_pred CCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecc
Confidence 389999889999999999999999988763 1221111 2344455556655442 2234555567
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
+|+..++.+ .+|||.+-+.-.++-.+..
T Consensus 237 fRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 237 FRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred cCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 999999997 3899999999888776543
No 410
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=89.39 E-value=1.6 Score=43.71 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=127.4
Q ss_pred HhccccceeeccccC-CCCCCccceeE-cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017718 40 RNAFSRILFRPRILI-DVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (367)
Q Consensus 40 ~~~~~~i~l~pr~l~-~~~~vd~st~i-~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i 117 (367)
.-.|+++.|+|.... ..++||+++.+ +..+++.|++-|||--.+ |..+|.+.+.+|..-.+. -++++|+-
T Consensus 29 ~LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVt------es~MAiaMAl~ggIg~IH--hNctpe~Q 100 (503)
T KOG2550|consen 29 GLTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVT------ESEMAIAMALLGGIGFIH--HNCTPEDQ 100 (503)
T ss_pred CccccceeecccccccccccceeehhhhhcccccCceeccCCcccc------hhHHHHHHHhcCCceeee--cCCCHHHH
Confidence 357899999997763 45689999886 568899999999995543 778999999888665553 35566653
Q ss_pred Hhh----C--CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCch-----hHHhh--hhcCC--CCccccc
Q 017718 118 AST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR-----EADIK--NRFTL--PPFLTLK 182 (367)
Q Consensus 118 ~~~----~--~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r-----~~~~~--~~~~~--p~~~~~~ 182 (367)
+.. . .+.+.-+-..-.....+-+.++.=+..||..+-+|-|.-..++- .||+. +.-.. ..-++..
T Consensus 101 A~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~ 180 (503)
T KOG2550|consen 101 ADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKN 180 (503)
T ss_pred HHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhcccc
Confidence 321 1 01111000000011112223333334677776666442221100 01110 00000 0000000
Q ss_pred cccccccCccccccchhhHHHhhhccC---------ccc-c---HHHHHhhcCCCEEEEec----------C----CHHH
Q 017718 183 NFQGLDLGKMDEANDSGLAAYVAGQID---------RSL-S---WKWLQTITKLPILVKGV----------L----TAED 235 (367)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~~-~---~~~l~~~~~~Pv~vK~v----------~----~~~~ 235 (367)
..... +.-......+.+.+... ..+ . -..|+++-+-|+.-|.. . +.+.
T Consensus 181 ~~~~~-----~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~r 255 (503)
T KOG2550|consen 181 PVTGA-----QGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKER 255 (503)
T ss_pred ccccc-----ccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHH
Confidence 00000 00000000000000000 000 0 01333434445544432 1 2344
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
...+.++|+|.|++...-|. ..-.++.+..|++..+ +++||+ |.+-+.+.+...+..|||++=+|
T Consensus 256 l~ll~~aGvdvviLDSSqGn----S~~qiemik~iK~~yP-~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 256 LDLLVQAGVDVVILDSSQGN----SIYQLEMIKYIKETYP-DLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHHhhhcCCcEEEEecCCCc----chhHHHHHHHHHhhCC-Cceeec-cceeeHHHHHHHHHccCceeEec
Confidence 67889999999999653331 2235567777777654 677877 88999999999999999986555
No 411
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=89.38 E-value=12 Score=35.37 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=47.1
Q ss_pred HHHhhcCCCEEEEec------CCHHH----HHHHHH-cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE---
Q 017718 216 WLQTITKLPILVKGV------LTAED----ARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF--- 281 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v------~~~~~----a~~~~~-~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi--- 281 (367)
.+++..+.|+++-.. .++++ +.++.+ +|+++|.+-+ | . +....|+..+...+||+
T Consensus 66 ~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd--~------~---~~~~~I~al~~agipV~gHi 134 (254)
T cd06557 66 AVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEG--G------A---EVAETIRALVDAGIPVMGHI 134 (254)
T ss_pred HHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcC--c------H---HHHHHHHHHHHcCCCeeccc
Confidence 566667889666543 12443 455666 9999999832 2 1 33333333333368888
Q ss_pred --------EecCCC----CH-------HHHHHHHHcCCCEEEec
Q 017718 282 --------LDGGVR----RG-------TDVFKALALGASGIFIG 306 (367)
Q Consensus 282 --------a~GGI~----~~-------~dv~kal~lGAd~V~ig 306 (367)
..||.+ +. +++..+..+||+++.+=
T Consensus 135 GL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE 178 (254)
T cd06557 135 GLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLE 178 (254)
T ss_pred cccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 567653 33 33334445899999874
No 412
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=89.36 E-value=2.3 Score=39.63 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=28.8
Q ss_pred cHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 213 SWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.++.+++..++||||-- +.++.+|..+.|.|+|++-+
T Consensus 166 ~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp HHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 34577777899999864 57899999999999999987
No 413
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=89.36 E-value=4 Score=37.95 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=30.2
Q ss_pred cHHHHHhh-cCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 213 SWKWLQTI-TKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 213 ~~~~l~~~-~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
+|+.+++. .++||+.=+ +.+.++++.+.+.|+|+|.+.
T Consensus 181 d~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 181 DLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred cHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 57766655 578987644 578999999999999999983
No 414
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.23 E-value=3.7 Score=39.90 Aligned_cols=34 Identities=21% Similarity=0.660 Sum_probs=28.5
Q ss_pred HHHhhcCCCEEEEe-cCCHHHHHHHH-HcCCcEEEE
Q 017718 216 WLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~-v~~~~~a~~~~-~~G~d~i~v 249 (367)
.+++..++||+.=+ +.+.+++..+. +.|+|++.+
T Consensus 186 ~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 186 RVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred HHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 67777889998766 47899999888 688999988
No 415
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.19 E-value=3.8 Score=36.80 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+.++.+.+.|++.|-+.. ..+...+.+..+.+.. ..-.+..|-+.+.+++-.|+++|||+|.++.
T Consensus 28 ~~~~~~~~~Gv~~vqlr~-------k~~~~~e~~~~~~~~~--~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 28 QMAEAVAAGGMRLIEITW-------NSDQPAELISQLREKL--PECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred HHHHHHHHCCCCEEEEeC-------CCCCHHHHHHHHHHhC--CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 347788899999998843 2234566676665543 3444667889999999999999999995554
No 416
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.10 E-value=8 Score=36.62 Aligned_cols=35 Identities=34% Similarity=0.356 Sum_probs=29.5
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+..++||++... .+.++++.+.+. ||+++|.
T Consensus 193 ~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVG 228 (258)
T PRK13111 193 ARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVG 228 (258)
T ss_pred HHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEc
Confidence 4888888999999764 588999999886 9999994
No 417
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=89.07 E-value=4.8 Score=37.44 Aligned_cols=95 Identities=23% Similarity=0.367 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
|+-.+.+..+...+.||..+--+-|-|+..+|-.|.--..-+|-+- .-+++.+ ......
T Consensus 115 D~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~a---------------PIGSg~G------~~n~~~ 173 (262)
T COG2022 115 DPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGA---------------PIGSGLG------LQNPYN 173 (262)
T ss_pred ChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccc---------------cccCCcC------cCCHHH
Confidence 3344444455555667777776666666666554442111122110 0011100 011113
Q ss_pred HHHHHhhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEE
Q 017718 214 WKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK-~v~~~~~a~~~~~~G~d~i~v 249 (367)
++.+++..++||+|- ++.++.+|..+.|.|+|++-+
T Consensus 174 l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 174 LEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred HHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 457777889999985 457899999999999999876
No 418
>PRK05269 transaldolase B; Provisional
Probab=89.05 E-value=24 Score=34.57 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=63.5
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-------------CccchHHHHHHHHHHh---cCCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT---QGRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~---~~~~~via~G 284 (367)
-++++-+-.+.+.+.+..+.++|++.|... =||-.| .+.+....+.++.+.. +.+..|++.
T Consensus 149 ~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~A- 225 (318)
T PRK05269 149 EGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGA- 225 (318)
T ss_pred cCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEee-
Confidence 388998888999999999999999988763 122111 1234455555555443 235566664
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
.+|+..++.+ ..|+|.|-+.-.++..+.
T Consensus 226 Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 226 SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 6999999997 569999998888877665
No 419
>TIGR03586 PseI pseudaminic acid synthase.
Probab=89.02 E-value=24 Score=34.60 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=59.9
Q ss_pred hcCCCEEEEecC-CHHH----HHHHHHcCCcEEEEcCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCH--H
Q 017718 220 ITKLPILVKGVL-TAED----ARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRG--T 290 (367)
Q Consensus 220 ~~~~Pv~vK~v~-~~~~----a~~~~~~G~d~i~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~--~ 290 (367)
.+++||++|..+ +.++ +..+.+.|..-|++- |.-+.... ....+..++.+++.. .+||-.+. ++. .
T Consensus 132 ~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Ll-hC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SD--Ht~G~~ 206 (327)
T TIGR03586 132 KTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLL-KCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSD--HTLGIL 206 (327)
T ss_pred hcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE-ecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeC--CCCchH
Confidence 358999999874 4444 345557887444431 33221111 112445566666655 68995543 222 2
Q ss_pred HHHHHHHcCCCEEEechHHHHHhhccChHH----HHHHHHHHHHHHHHHHHHhCCC
Q 017718 291 DVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~~l~~~G~~~----v~~~i~~l~~el~~~m~~~G~~ 342 (367)
-...|.++||+ +|=+-|-..-...|.+. --+-+..|.++++..-..+|..
T Consensus 207 ~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~ 260 (327)
T TIGR03586 207 APVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV 260 (327)
T ss_pred HHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 33466779998 45554433222223211 0123455566666666666653
No 420
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=88.90 E-value=1.8 Score=42.75 Aligned_cols=43 Identities=28% Similarity=0.425 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+++.|.++++.. ++||++- ||.+.+|+.++..+|+|++.+..
T Consensus 200 ~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 200 LTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 4567788887766 7899986 68999999999999999999865
No 421
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=88.90 E-value=1.3 Score=42.00 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcC--CCcEEEecCCCCH-H-HHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQG--RIPVFLDGGVRRG-T-DVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~--~~~via~GGI~~~-~-dv~kal~lGAd~V~ig 306 (367)
.++|+.+.+.|+|+|++.|.+..-. +.++.+..++..+...++. .+| ++.-=+++. . -+.-|.+.|||+|-+-
T Consensus 31 ~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p-~GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 31 WKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP-LGINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC-eeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 3789999999999999999887433 5566666655555443322 345 222112322 2 2334446799999874
No 422
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=88.89 E-value=22 Score=34.81 Aligned_cols=206 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred ceeEcCeeecc---ceEeCcccchhccCChhhHHHHHHHHHcCCcee-ecCCCCCCHHHHHhhCCCceE-----------
Q 017718 62 NTTVLGFKISM---PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVASTGPGIRF----------- 126 (367)
Q Consensus 62 st~i~g~~l~~---Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~~~~~~e~i~~~~~~~~~----------- 126 (367)
..+++|+.+.. |++||=+|...-..-+.-.++..+|+++|+.++ + +.-...+.+........+
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKf--Qt~~~~d~~t~~~~~~~~~i~~~~~~~sl 78 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKF--QTFYTPDIMTLESKNVPFKIKTLWDKVSL 78 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeee--ecccccccccccccCCccccccccccccH
Q ss_pred EEEee--cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 127 FQLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 127 ~QLy~--~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
+|+|- .-+.++..++.+.|++.|.-.+ +.....+..|+-+.+..|.
T Consensus 79 yel~e~~~~p~e~~~~Lke~a~~~Gi~~~-----SSPfd~~svd~l~~~~~~a--------------------------- 126 (347)
T COG2089 79 YELYEEAETPLEWHAQLKEYARKRGIIFF-----SSPFDLTAVDLLESLNPPA--------------------------- 126 (347)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCeEEE-----ecCCCHHHHHHHHhcCCCe---------------------------
Q ss_pred hhccCccccHH---HHHhhcCCCEEEEecCC-----HHHHHHHHHcCCc-EEEEcCCCCCCCCCccchHHHHHHHHHHhc
Q 017718 205 AGQIDRSLSWK---WLQTITKLPILVKGVLT-----AEDARIAVQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQ 275 (367)
Q Consensus 205 ~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~-----~~~a~~~~~~G~d-~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 275 (367)
-+-.....+|- ......+.|+++-..++ .+....+.+.|.. .+.++....+.-..-...+..++.+.+..
T Consensus 127 yKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F- 205 (347)
T COG2089 127 YKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF- 205 (347)
T ss_pred EEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEE
Q 017718 276 GRIPVFLDGGVRRGTDVFKALALGASGI 303 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~lGAd~V 303 (367)
.++|=.+.==..-.-.+-|.+|||..+
T Consensus 206 -n~~vGlSDHT~g~~a~l~AvALGA~vi 232 (347)
T COG2089 206 -NAIVGLSDHTLGILAPLAAVALGASVI 232 (347)
T ss_pred -CCccccccCccchhHHHHHHHhcccce
No 423
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=88.86 E-value=4.6 Score=39.45 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=28.7
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHH-cCCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQ-AGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~-~G~d~i~v 249 (367)
.+++.+++||+.=+- .+.++++.+.+ .|+|++.+
T Consensus 188 ~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 677778999987764 68999998886 69999988
No 424
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=88.81 E-value=13 Score=35.64 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=73.5
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V 303 (367)
.++++|+... +.|+|.+-++. ||-+ .+. -.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5788887765 67999999874 5543 233 3678899998887 7999887765444 56778999999999
Q ss_pred EechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
=++|-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554210 00 0123344556677777777777753
No 425
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=88.80 E-value=16 Score=33.54 Aligned_cols=63 Identities=17% Similarity=0.326 Sum_probs=46.4
Q ss_pred ccccHHHHHhh-cCCCEEEEecCCHHHHHHHHHcCC-cEEEEcCCCCCCCCCccchHHHHHHHHHHh
Q 017718 210 RSLSWKWLQTI-TKLPILVKGVLTAEDARIAVQAGA-AGIIVSNHGARQLDYVPATIMALEEVVKAT 274 (367)
Q Consensus 210 ~~~~~~~l~~~-~~~Pv~vK~v~~~~~a~~~~~~G~-d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~ 274 (367)
..++|..+... ...|+++.+..+++.+..+++.+. .+|.+|. |-..+.|.-..+.+.++.+.+
T Consensus 141 ~~fDW~~l~~~~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSS--GVE~~pG~KD~~kv~~f~~~v 205 (208)
T COG0135 141 QTFDWNLLPKLRLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSS--GVESSPGIKDPAKVKAFFEAV 205 (208)
T ss_pred cEECHHHhccccccCCEEEECCCCHHHHHHHHHhcCCceEEecc--ccccCCCCCCHHHHHHHHHHH
Confidence 35799866664 678999999999999999999998 9999964 322223455666666666554
No 426
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=88.78 E-value=6 Score=36.75 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=46.0
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.++.+.+.+++++.++|-+. ........+.+..+...++.+.|... =|+.++.+++.+..+|+|.+--..|..++
T Consensus 73 s~~~l~~~~~~g~~igGl~~--~~~~~~~~~~l~~i~~~lp~~~pr~l-~G~~~P~~i~~~v~~GvD~fDs~~p~~~A 147 (238)
T PF01702_consen 73 SAEELSEDGFDGYAIGGLSP--GEEKEERLEILEAIINNLPPDKPRYL-LGVGTPEEILEAVYLGVDLFDSSYPTRLA 147 (238)
T ss_dssp HHHHHHHSS-SEEEE-SSSS--SSHHHHHHHHHHHHHHCS-TTS-EEE-TTB-SHHHHHHHHHTT--EEEESHHHHHH
T ss_pred HHHHHHhcccccccccCCcC--CCCHHHHHHHHHHHHhhCCcccceec-cCCCCHHHHHHHHHcCCcEEcchHHHHHH
Confidence 46677776799999954111 01011233455555555666788888 56889999999999999988877787765
No 427
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=88.60 E-value=6.6 Score=38.41 Aligned_cols=81 Identities=23% Similarity=0.267 Sum_probs=59.9
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCC-C--c-cchHHHHHHHHHHhcCCCcEEEecCCCC--------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLD-Y--V-PATIMALEEVVKATQGRIPVFLDGGVRR-------------- 288 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~-~--~-~~~~~~l~~i~~~~~~~~~via~GGI~~-------------- 288 (367)
.++++|+... +.|+|.+.++. ||-+... + . .-.++.|.+|.+.+. ++|+..=||=..
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 5688887765 57999999875 5654321 1 1 236788999988873 589998776432
Q ss_pred --------HHHHHHHHHcCCCEEEechHHHHH
Q 017718 289 --------GTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 289 --------~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
-+|+.|++.+|..-|=++|-+..+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 388999999999999999977554
No 428
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.39 E-value=1.9 Score=40.90 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 214 WKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
.+++|+.+++|+++.- +.++++++.+.++ +||++|.
T Consensus 197 v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 197 VKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 3489998999999885 4789999999999 9999993
No 429
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=88.30 E-value=18 Score=32.22 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=48.7
Q ss_pred HHHhhcCCCEEEEec-CC-HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGV-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~-~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
++++.++.|+.+... .+ .+.++.+.++|+|++.+ |++.. ....+.++.+.+ . .+.+..+-.-.+..+..
T Consensus 51 ~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~~~~~~~ 121 (211)
T cd00429 51 ALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF--HAEAT----DHLHRTIQLIKE-L--GMKAGVALNPGTPVEVL 121 (211)
T ss_pred HHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--Cccch----hhHHHHHHHHHH-C--CCeEEEEecCCCCHHHH
Confidence 566544456543332 22 35688888999999999 55421 122333443332 2 44455544444566677
Q ss_pred HHHHcCCCEEEech
Q 017718 294 KALALGASGIFIGR 307 (367)
Q Consensus 294 kal~lGAd~V~ig~ 307 (367)
+.+..++|.+.++.
T Consensus 122 ~~~~~~~d~i~~~~ 135 (211)
T cd00429 122 EPYLDEVDLVLVMS 135 (211)
T ss_pred HHHHhhCCEEEEEE
Confidence 77777799998875
No 430
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=88.11 E-value=3 Score=40.02 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHhhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEE
Q 017718 216 WLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK-~v~~~~~a~~~~~~G~d~i~v 249 (367)
.+++..++||+.= ++.+.++|..+.++|||+|.+
T Consensus 228 ~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 228 DVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQV 262 (300)
T ss_pred HHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceee
Confidence 6777788999854 468999999999999999988
No 431
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=88.05 E-value=3.5 Score=37.74 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=51.1
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
.++.+.+.|++.|-+.. ..+...+.++++++..+ --+|+.|=|-+++++..+...||+++.
T Consensus 30 ~a~Ali~gGi~~IEITl-------~sp~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 30 LAKALIEGGIPAIEITL-------RTPAALEAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred HHHHHHHcCCCeEEEec-------CCCCHHHHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCCEEE
Confidence 36788999999999854 23567889999988774 348999999999999999999999885
No 432
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=87.78 E-value=2.3 Score=40.70 Aligned_cols=84 Identities=26% Similarity=0.353 Sum_probs=60.0
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~~~~d 291 (367)
+-|+++-++-++-.|+.+.++|.++|.+|++|=. -.|.+..+++ ..++|.+.+ ++||++|. |..++..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 5688888899999999999999999999875411 1355555443 345555555 89999954 6666555
Q ss_pred HH----HHHHcCCCEEEech
Q 017718 292 VF----KALALGASGIFIGR 307 (367)
Q Consensus 292 v~----kal~lGAd~V~ig~ 307 (367)
+. +++..|+.++.|=-
T Consensus 95 vartV~~~~~aG~agi~iED 114 (289)
T COG2513 95 VARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHcCcceeeeee
Confidence 44 55568999887753
No 433
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=87.61 E-value=5.5 Score=38.09 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=29.1
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~v 249 (367)
.+++..++||+.-+. .+.+++..+.++|||+|.+
T Consensus 225 ~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~i 259 (296)
T cd04740 225 QVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQV 259 (296)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 667777899887664 6899999999999999988
No 434
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=87.59 E-value=2.2 Score=40.13 Aligned_cols=37 Identities=22% Similarity=0.503 Sum_probs=30.6
Q ss_pred cHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 213 SWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.++.+++..++||++-- +.+++|+..+.+.|+|++-+
T Consensus 180 ~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 180 NLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred HHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 34567777889988764 58899999999999999977
No 435
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=87.56 E-value=11 Score=38.60 Aligned_cols=66 Identities=23% Similarity=0.211 Sum_probs=46.0
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
|+.++++++.+.+ |+|++-|. +.+-..+.....+.++.. ..+.| .|+++.+|+..+..+|||++++
T Consensus 218 GI~t~~d~~~~~~-~~davLiG----~~lm~~~d~~~~~~~L~~---~~vKI---CGit~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 218 GIYTHAQVRELSP-FANGFLIG----SSLMAEDDLELAVRKLIL---GENKV---CGLTRPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CCCCHHHHHHHHh-cCCEEEEC----HHHcCCCCHHHHHHHHhc---ccccc---CCCCCHHHHHHHHhCCCCEEee
Confidence 4578999998865 79999882 223233334445554432 12333 6899999999999999999987
No 436
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=87.51 E-value=4.4 Score=39.02 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=58.2
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.++.|-. +...+.++++.++++|+++++++=-.+. .-..|+.+.-..+ .+..+ +. . +
T Consensus 169 ~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~--~~~id~~~~~~~~-~~~~~------------~~-~--g- 227 (299)
T cd02940 169 IPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNS--LMGVDLDGTPPAP-GVEGK------------TT-Y--G- 227 (299)
T ss_pred CCeEEECCC--CchhHHHHHHHHHHcCCCEEEEeccccc--ccccccccCCccc-cccCC------------CC-c--C-
Confidence 578888753 4446778899999999999875321110 0000000000000 00000 00 0 0
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.+.........|+ .+++.. ++||+.=+ +.+.+|+.....+|||++.+
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 0000012223455 677777 78987655 58899999999999999988
No 437
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=87.47 E-value=5.8 Score=36.17 Aligned_cols=34 Identities=21% Similarity=0.530 Sum_probs=28.8
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHc-CCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQA-GAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~-G~d~i~v 249 (367)
.+++..++||+.=+. .+.+++..+.+. |+|+|.+
T Consensus 177 ~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 177 EIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 677778899988765 689999999887 8999988
No 438
>PLN02858 fructose-bisphosphate aldolase
Probab=87.46 E-value=67 Score=37.81 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=75.3
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcC-CCcEEEec--CCCCHHHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQG-RIPVFLDG--GVRRGTDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~-~~~via~G--GI~~~~dv~kal~lGAd~V 303 (367)
.++++|+... +.|+|.+-++- ||-+......-.++.|.+|.+.+.. ++|+..=| |+. -+++.|++.+|..-|
T Consensus 1250 T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~Ki 1328 (1378)
T PLN02858 1250 TDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRKF 1328 (1378)
T ss_pred CCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeEE
Confidence 4678877665 57999999864 5644311112367889999988732 58888866 444 577889999999999
Q ss_pred EechHHHHHhh----ccCh----HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLA----AEGE----KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~----~~G~----~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
=++|-+.++.. ..+. .-.....+.+++-.+..|+.+|..
T Consensus 1329 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1329 NVNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred EeCHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997755422 1110 123345566777788888888754
No 439
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=87.31 E-value=22 Score=33.29 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC--CCCCcc---chHHHHHHHHHHhc---CCCcEEEecC
Q 017718 214 WKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVP---ATIMALEEVVKATQ---GRIPVFLDGG 285 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~---~~~~~l~~i~~~~~---~~~~via~GG 285 (367)
...|++..+.|+-+-+..+.+....+.+.-.+.+++---... +-++|. ...+.|..+.+.++ -++.+|.+-
T Consensus 57 v~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP- 135 (239)
T PRK05265 57 VRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDP- 135 (239)
T ss_pred HHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC-
Confidence 336777777789888888999999999999999998532111 112222 24455655555443 268889984
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+++..+..+|||.|-+-+.-+
T Consensus 136 --~~~qi~~A~~~GAd~VELhTG~y 158 (239)
T PRK05265 136 --DPEQIEAAAEVGADRIELHTGPY 158 (239)
T ss_pred --CHHHHHHHHHhCcCEEEEechhh
Confidence 78999999999999999998554
No 440
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=87.21 E-value=3.7 Score=39.62 Aligned_cols=83 Identities=23% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCC---C-CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA---R-QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg---~-~~~~~~~~~----~~l~~i~~~~~~~~~via~G--GI~~~~d 291 (367)
+.++++-++.+.-.|+.+.++|.++|.+|++|= . ..|.+.-++ +.+.+|.+.+ ++||++|. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 456777778888899999999999999987531 1 245554433 3345555555 89999964 6666556
Q ss_pred H----HHHHHcCCCEEEec
Q 017718 292 V----FKALALGASGIFIG 306 (367)
Q Consensus 292 v----~kal~lGAd~V~ig 306 (367)
+ .++...|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34555899988883
No 441
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=87.17 E-value=5.4 Score=37.83 Aligned_cols=35 Identities=40% Similarity=0.536 Sum_probs=28.5
Q ss_pred HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.+++||.+.- +.++++++.+. .|+||++|.
T Consensus 191 ~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 191 KRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred HHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 488888999999985 47889999988 999999993
No 442
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=87.15 E-value=4.7 Score=38.44 Aligned_cols=92 Identities=10% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH----cCCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~----lGAd~V~ig~~~ 309 (367)
+.++.+.+.|+|+|.+.|+.|-...-.......+-+......++ |++.=|=.+..|+++... +|||+|++..|+
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK--VIFQVGSLNLEESIELARAAKSFGIYAIASLPPY 101 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc
Q ss_pred HHHhhcc-ChHHHHHHHHHHHH
Q 017718 310 VYSLAAE-GEKGVRRVLEMLRE 330 (367)
Q Consensus 310 l~~l~~~-G~~~v~~~i~~l~~ 330 (367)
.+. . .++++.+++..+.+
T Consensus 102 y~~---~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 102 YFP---GIPEEWLIKYFTDISS 120 (279)
T ss_pred CCC---CCCHHHHHHHHHHHHh
No 443
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.00 E-value=5.4 Score=38.34 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=51.4
Q ss_pred hcCCCEEEEec-CCHHH----HHHHHHcC-CcEEEEcC------CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEe--c
Q 017718 220 ITKLPILVKGV-LTAED----ARIAVQAG-AAGIIVSN------HGARQLDYVP-ATIMALEEVVKATQGRIPVFLD--G 284 (367)
Q Consensus 220 ~~~~Pv~vK~v-~~~~~----a~~~~~~G-~d~i~vs~------~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~--G 284 (367)
..+.|+++=.. .+.++ |+++.++| +|+|.+.- |||..+...+ ...+.+..+++.+ ++||++- .
T Consensus 89 ~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~ 166 (301)
T PRK07259 89 EFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP 166 (301)
T ss_pred ccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 34789888665 34444 77888999 99998832 2232221111 2334555555554 6888873 3
Q ss_pred CCCCHHHHHHHHH-cCCCEEEe
Q 017718 285 GVRRGTDVFKALA-LGASGIFI 305 (367)
Q Consensus 285 GI~~~~dv~kal~-lGAd~V~i 305 (367)
.+.+..++++.+. .|+|++.+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CchhHHHHHHHHHHcCCCEEEE
Confidence 4555566777665 89998765
No 444
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=86.99 E-value=29 Score=33.12 Aligned_cols=181 Identities=18% Similarity=0.116 Sum_probs=97.7
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHc-CCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAA-GTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~-G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
|.++.|+.-.+-.+.++-..+.+-+.+. |+..++ + ++.+.+.+|-. +... -+.++++- ..+.+.
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~~ 84 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLKE 84 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHHH
Confidence 5556676433333333444666666666 866442 3 33455666532 2222 24555653 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++++.|+++|++++.+.- |.. +++ + ...+.+ -++.+
T Consensus 85 ai~~a~~a~~~Gad~v~~~~--P~y------------~~~--~----------------~~~i~~----------~~~~v 122 (288)
T cd00954 85 SQELAKHAEELGYDAISAIT--PFY------------YKF--S----------------FEEIKD----------YYREI 122 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeC--CCC------------CCC--C----------------HHHHHH----------HHHHH
Confidence 77888999999999998632 221 000 0 000111 12366
Q ss_pred Hhhc-CCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 218 QTIT-KLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+.+ ++||++=.. .+++...++.+.. ..+-+= +.. .....+.++.+..+.++.|+. |. .
T Consensus 123 ~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~p-nivgiK-------~s~-~d~~~~~~~~~~~~~~~~v~~-G~---d 189 (288)
T cd00954 123 IAAAASLPMIIYHIPALTGVNLTLEQFLELFEIP-NVIGVK-------FTA-TDLYDLERIRAASPEDKLVLN-GF---D 189 (288)
T ss_pred HHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCC-CEEEEE-------eCC-CCHHHHHHHHHhCCCCcEEEE-ec---h
Confidence 6678 789987654 4677777777632 222221 111 123344455555444555553 32 3
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
.-+..++.+||++++.|..-
T Consensus 190 ~~~~~~~~~G~~G~i~~~~n 209 (288)
T cd00954 190 EMLLSALALGADGAIGSTYN 209 (288)
T ss_pred HHHHHHHHcCCCEEEeChhh
Confidence 45667888999999888643
No 445
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=86.85 E-value=5.6 Score=40.22 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=57.8
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.++.|-+ +...+.++++.++++|++++.++ |+-. +.-.-|+.+.-..|. +..++ ..+..++
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p~-~~~~~---------~~gg~SG--- 231 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMPI-VNGKS---------SHGGYCG--- 231 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCce-ecCCC---------Ccccccc---
Confidence 578888863 33346788899999999998853 2211 000001110000000 00000 0000000
Q ss_pred HhhhccCccccHH---HHHhhc---CCCEE-EEecCCHHHHHHHHHcCCcEEEEc
Q 017718 203 YVAGQIDRSLSWK---WLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~---~~Pv~-vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
.....+.|+ .+++.+ ++||+ +.++.+.+||...+.+|||+|.+.
T Consensus 232 ----~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 232 ----PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred ----hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheee
Confidence 011223565 555655 68987 445789999999999999999883
No 446
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=86.77 E-value=12 Score=36.75 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=54.1
Q ss_pred HHHhhc--CCCEEEEec--CCHHHHHH----HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~a~~----~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.. +.++.+..- .+.++|.. +.+.+++.|-- ...+..++.+.++++.. .+||+++..+.
T Consensus 181 ~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipi~~dE~~~ 250 (357)
T cd03316 181 AVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE--------PVPPDDLEGLARLRQAT--SVPIAAGENLY 250 (357)
T ss_pred HHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC--------CCCccCHHHHHHHHHhC--CCCEEeccccc
Confidence 666665 467777653 35566543 34445444321 01122566777777765 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEec
Q 017718 288 RGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig 306 (367)
+..|+.+++..| +|.|++-
T Consensus 251 ~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 251 TRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred cHHHHHHHHHhCCCCEEecC
Confidence 999999999876 8888764
No 447
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=86.69 E-value=7.7 Score=37.90 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=56.4
Q ss_pred CCceEEEEeecCCH----HHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccc
Q 017718 122 PGIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (367)
Q Consensus 122 ~~~~~~QLy~~~d~----~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (367)
+.|..+.+-.+.+. +...++++.++++|+++|.||--+.. .+++. ++ .+
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------~qg~s-g~----~~-------------- 175 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------LSGLS-PK----EN-------------- 175 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------hcCCC-cc----cc--------------
Confidence 35677777543321 45567788889999999888765431 01111 00 00
Q ss_pred hhhHHHhhhccCccccHH---HHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 198 SGLAAYVAGQIDRSLSWK---WLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 198 ~~~~~~~~~~~d~~~~~~---~l~~~~-~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.. -+..+|+ .+++.. ++||+.=+ +.+.+++....+ |+|+|.+
T Consensus 176 --------~~-~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMi 222 (318)
T TIGR00742 176 --------RE-IPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMV 222 (318)
T ss_pred --------cc-CCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 00 0123676 566666 79987544 588999998886 9999988
No 448
>TIGR03586 PseI pseudaminic acid synthase.
Probab=86.60 E-value=17 Score=35.67 Aligned_cols=77 Identities=10% Similarity=0.214 Sum_probs=57.0
Q ss_pred HhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 218 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 218 ~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
.+..+++++ -.+.+.+.+..+.+.|++.+-+.. +-...+.+|..+.+. ..|||.+-|..+-+++..++.
T Consensus 86 ~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KI~S-------~~~~n~~LL~~va~~---gkPvilstG~~t~~Ei~~Av~ 154 (327)
T TIGR03586 86 AKELGLTIF-SSPFDETAVDFLESLDVPAYKIAS-------FEITDLPLIRYVAKT---GKPIIMSTGIATLEEIQEAVE 154 (327)
T ss_pred HHHhCCcEE-EccCCHHHHHHHHHcCCCEEEECC-------ccccCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHH
Confidence 455688875 467889999999999999999832 122356677776552 689999999999999887775
Q ss_pred ----cCCCEEEe
Q 017718 298 ----LGASGIFI 305 (367)
Q Consensus 298 ----lGAd~V~i 305 (367)
.|..-|.+
T Consensus 155 ~i~~~g~~~i~L 166 (327)
T TIGR03586 155 ACREAGCKDLVL 166 (327)
T ss_pred HHHHCCCCcEEE
Confidence 47744555
No 449
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=86.57 E-value=28 Score=32.58 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=73.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHH---HHHhcCC-CcEEEecCCCCHHHHHHHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV---VKATQGR-IPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i---~~~~~~~-~~via~GGI~~~~dv~kal~ 297 (367)
++++-+-.+.|...|..+.++|++.|... =||-.|++......+.++ .+..... ..+++. +++++.++..+..
T Consensus 115 GI~~NvTLiFS~~QAl~aa~aga~~iSpF--vgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~va-s~~~~~~~~~~~l 191 (239)
T COG0176 115 GIKTNVTLIFSAAQALLAAEAGATYISPF--VGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVA-SARFPNHVYIAAL 191 (239)
T ss_pred CCeeeEEEEecHHHHHHHHHhCCeEEEee--cchHHhhccCchHHHHHHHHHHHHhccccceEEEe-cCccHHHHHHHHH
Confidence 68888888899999999999999887763 355455554444444444 4333223 456665 4999999999999
Q ss_pred cCCCEEEechHHHHHhhccC--------hHHHHHHHHHH
Q 017718 298 LGASGIFIGRPVVYSLAAEG--------EKGVRRVLEML 328 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~~G--------~~~v~~~i~~l 328 (367)
+|||.+-+.-..+-.+..++ .+|++.+.+.+
T Consensus 192 ~G~d~~Tip~~~l~~l~~~~~~~~~~l~~eGI~~F~~D~ 230 (239)
T COG0176 192 AGADVLTIPPDLLKQLLKHGGAMAVPLLDEGIRKFAKDW 230 (239)
T ss_pred hCCCcccCCHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 99999999988887766553 24555555444
No 450
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=86.49 E-value=3.6 Score=38.93 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH-H---HHHHHHhcCCCc-EEEecC---CCC-
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRIP-VFLDGG---VRR- 288 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~~~-via~GG---I~~- 288 (367)
+.|+++=.+-+.-.|+.+.++|+|.|.++...+. ..|.+.-+++- + +.+.+.+ +.| |++|-+ ..+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTS 88 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCC
Confidence 5688888888899999999999999975322111 13444444433 3 3333333 678 888765 434
Q ss_pred HHH----HHHHHH-cCCCEEEe
Q 017718 289 GTD----VFKALA-LGASGIFI 305 (367)
Q Consensus 289 ~~d----v~kal~-lGAd~V~i 305 (367)
.++ +.+.+. .||++|.|
T Consensus 89 ~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 444 567777 99999999
No 451
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=86.48 E-value=6.5 Score=39.48 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=58.6
Q ss_pred HHHhhc-CCCEEEEec--CCHH----HHHHHHHcCCcEEEEcC---CCCCCCCCcc---chHHHHHHHHHHhcC--CCcE
Q 017718 216 WLQTIT-KLPILVKGV--LTAE----DARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQG--RIPV 280 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v--~~~~----~a~~~~~~G~d~i~vs~---~gg~~~~~~~---~~~~~l~~i~~~~~~--~~~v 280 (367)
.+++.+ ++|||+=+. .+.+ .++.+.++|+|+|.+-- |+....+.+. ...+.+.++.++++. ++||
T Consensus 106 ~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv 185 (385)
T PLN02495 106 QLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPV 185 (385)
T ss_pred HHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCce
Confidence 455556 579988773 3543 37888999999999732 2210011111 134555555444432 6899
Q ss_pred EE--ecCCCCHHHHHHHH-HcCCCEEEechHH
Q 017718 281 FL--DGGVRRGTDVFKAL-ALGASGIFIGRPV 309 (367)
Q Consensus 281 ia--~GGI~~~~dv~kal-~lGAd~V~ig~~~ 309 (367)
++ +-.+.+-.++++++ ..|||+|.+-..+
T Consensus 186 ~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 186 WAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred EEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 98 55677778888844 5899999886544
No 452
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=86.14 E-value=3.3 Score=40.51 Aligned_cols=100 Identities=23% Similarity=0.174 Sum_probs=59.1
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
-|.++.|-...+.+.+.++++.++++|+++|.++-..... . . ..-|. ..+. .+..++.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~---~---~~~~~---~~~~---------~gG~sG~-- 260 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--P---G---LLRSP---LANE---------TGGLSGA-- 260 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--c---c---ccccc---ccCC---------CCccCCh--
Confidence 4788888654455567888999999999999876432210 0 0 00000 0000 0000000
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEEEE-ecCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~vK-~v~~~~~a~~~~~~G~d~i~v 249 (367)
......|+ .+++.. ++||+.- ++.+.+++.....+|||.+.+
T Consensus 261 -----~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~v 308 (327)
T cd04738 261 -----PLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQL 308 (327)
T ss_pred -----hhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhc
Confidence 00111233 677777 6898744 468999999999999999987
No 453
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=85.87 E-value=29 Score=32.39 Aligned_cols=94 Identities=19% Similarity=0.110 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC--CCCCcc---chHHHHHHHHHHhc---CCCcEEEecC
Q 017718 214 WKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVP---ATIMALEEVVKATQ---GRIPVFLDGG 285 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~---~~~~~l~~i~~~~~---~~~~via~GG 285 (367)
...|++..+.|+-+-+..+.+....+.+.-.+.+++----.. +-++|. ...+.|.++.+.++ -++.+|.|-
T Consensus 54 v~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP- 132 (237)
T TIGR00559 54 VYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA- 132 (237)
T ss_pred HHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC-
Confidence 346777777899888889999999999999999998532111 112222 23455666555443 268889887
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+++..+..+|||.|-+-+.-+
T Consensus 133 --~~~qi~~A~~~GAd~VELhTG~Y 155 (237)
T TIGR00559 133 --DKDQISAAAEVGADRIEIHTGPY 155 (237)
T ss_pred --CHHHHHHHHHhCcCEEEEechhh
Confidence 58889999999999999998554
No 454
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=85.80 E-value=31 Score=32.30 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=62.5
Q ss_pred cHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC--CCCCcc---chHHHHHHHHHHhc---CCCcEEEec
Q 017718 213 SWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVP---ATIMALEEVVKATQ---GRIPVFLDG 284 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~---~~~~~l~~i~~~~~---~~~~via~G 284 (367)
+...|++..+.|+-+-+..+.+....+.+.-.+.+++---..- +-++|. ...+.|.++.+.++ -++.+|.+=
T Consensus 54 Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP 133 (239)
T PF03740_consen 54 DVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP 133 (239)
T ss_dssp HHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred HHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3447777788899998889999999999999999998431111 111221 23455555554442 368888887
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.+++..|..+|||.|-+-+.-+-
T Consensus 134 ---~~~qi~~A~~~Gad~VELhTG~yA 157 (239)
T PF03740_consen 134 ---DPEQIEAAKELGADRVELHTGPYA 157 (239)
T ss_dssp ----HHHHHHHHHTT-SEEEEETHHHH
T ss_pred ---CHHHHHHHHHcCCCEEEEehhHhh
Confidence 488899999999999999996644
No 455
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=85.73 E-value=4.5 Score=38.24 Aligned_cols=72 Identities=29% Similarity=0.337 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHH----HHHHHhcCCCcEEEecCCC-CHH-HHHHHHHcCCCEEE
Q 017718 233 AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALE----EVVKATQGRIPVFLDGGVR-RGT-DVFKALALGASGIF 304 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~----~i~~~~~~~~~via~GGI~-~~~-dv~kal~lGAd~V~ 304 (367)
.++|+.+.+.|+|+|++.|.+.. ....++.+...+. ++++.+ ++|+=. -=++ ++. -+.-|.+.|||+|-
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~--~~p~GV-nvL~nd~~aalaiA~A~ga~FIR 108 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREV--SVPVGV-NVLRNDPKAALAIAAATGADFIR 108 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhC--CCCEEe-eeecCCCHHHHHHHHHhCCCEEE
Confidence 37899999999999999997654 2233444444443 334443 455311 1123 222 23445568999998
Q ss_pred ech
Q 017718 305 IGR 307 (367)
Q Consensus 305 ig~ 307 (367)
+..
T Consensus 109 v~~ 111 (254)
T PF03437_consen 109 VNV 111 (254)
T ss_pred ecC
Confidence 763
No 456
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=85.58 E-value=12 Score=33.34 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=49.2
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.+.+.++.|+++-. +.+.+.+.|+|++.+... .+ .. ..+++..+ . ..+....+++.+++.++
T Consensus 51 ~~~~~~~~~l~i~~-----~~~la~~~g~~GvHl~~~---~~-----~~---~~~r~~~~-~-~~~ig~s~h~~~e~~~a 112 (196)
T TIGR00693 51 ELCRRYGVPFIVND-----RVDLALALGADGVHLGQD---DL-----PA---SEARALLG-P-DKIIGVSTHNLEELAEA 112 (196)
T ss_pred HHHHHhCCeEEEEC-----HHHHHHHcCCCEEecCcc---cC-----CH---HHHHHhcC-C-CCEEEEeCCCHHHHHHH
Confidence 33345678888843 567788999999988321 11 11 22222232 1 23445669999999999
Q ss_pred HHcCCCEEEechH
Q 017718 296 LALGASGIFIGRP 308 (367)
Q Consensus 296 l~lGAd~V~ig~~ 308 (367)
..+|||.+.+|.-
T Consensus 113 ~~~g~dyi~~~~v 125 (196)
T TIGR00693 113 EAEGADYIGFGPI 125 (196)
T ss_pred hHcCCCEEEECCc
Confidence 9999999999853
No 457
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=85.57 E-value=12 Score=36.82 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=69.8
Q ss_pred hHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHH
Q 017718 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (367)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~ 168 (367)
+..+--.+..+|++.+..++...+-+.+..... +...+.... +....+++++.|.++++. ..+-.|
T Consensus 93 ~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~--~g~eAG----- 159 (336)
T COG2070 93 EAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIA--QGAEAG----- 159 (336)
T ss_pred HHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEe--cCCcCC-----
Confidence 445666677779999888776444444433211 333333332 234578899999999875 111000
Q ss_pred hhhhcCCCCccccccccccccCccccccchhhHHHhhh-ccCcc-cc-HHHHHhhcC-CCEEEEec-CCHHHHHHHHHcC
Q 017718 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG-QIDRS-LS-WKWLQTITK-LPILVKGV-LTAEDARIAVQAG 243 (367)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~-~~-~~~l~~~~~-~Pv~vK~v-~~~~~a~~~~~~G 243 (367)
| |... ....+ +. +..+++..+ +||+.-+. .+.+++..+...|
T Consensus 160 ---------G------------------------H~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG 206 (336)
T COG2070 160 ---------G------------------------HRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG 206 (336)
T ss_pred ---------C------------------------cCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc
Confidence 0 0000 00111 12 237778888 89999885 7889999999999
Q ss_pred CcEEEE
Q 017718 244 AAGIIV 249 (367)
Q Consensus 244 ~d~i~v 249 (367)
|+++.+
T Consensus 207 A~gVq~ 212 (336)
T COG2070 207 ADGVQM 212 (336)
T ss_pred cHHHHh
Confidence 999987
No 458
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=85.47 E-value=18 Score=37.57 Aligned_cols=182 Identities=17% Similarity=0.115 Sum_probs=101.8
Q ss_pred HHHHHcCCceeecCCCCC--CHHHHHhhC----------C---CceEEEEeecCCHHHH-HHHHHHHHHcCCcEEEEecC
Q 017718 95 RAASAAGTIMTLSSWSTS--SVEEVASTG----------P---GIRFFQLYVYKDRNVV-AQLVRRAERAGFKAIALTVD 158 (367)
Q Consensus 95 ~aa~~~G~~~~vs~~~~~--~~e~i~~~~----------~---~~~~~QLy~~~d~~~~-~~~l~ra~~~G~~ai~itvd 158 (367)
+..++.|+-+++++.-.. ..+++.... + +...||++...+..++ ++.++--++.|++.+ +.+|
T Consensus 45 ~~l~~~g~~~il~NtYhl~~r~~~~~~~gGlh~f~~w~g~ilTDSGgfQv~s~g~~~ltpe~~i~~Q~~iGsDI~-~~LD 123 (487)
T PRK13533 45 DELKEFGAEILITNSYIIYRSLREKALEKGLHKLLGFDGPIMTDSGSYQLLVYGDVEVTNEEILEFQRKIGSDIG-VPLD 123 (487)
T ss_pred HHHHHhCCCEEEeeHHHHHhhhhHHHHhCCHHHHhCCCCCeEeccCCcEEEEcCCccCCHHHHHHHHHHhCCCEE-eECC
Confidence 344688988888643111 133333221 1 3467999987665544 344555567898865 4567
Q ss_pred CCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH-HHHhhc--CCCEEEEec---CC
Q 017718 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-WLQTIT--KLPILVKGV---LT 232 (367)
Q Consensus 159 ~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~~--~~Pv~vK~v---~~ 232 (367)
-|++..-.+ +......+.+..|. ..++.. .-..++..+ ..
T Consensus 124 ~~t~~~~~~----------------------------------~~~~~sv~rT~rwa~~~~~~~~~~~~~l~giVQGg~~ 169 (487)
T PRK13533 124 IPTPPDVDY----------------------------------EEAEEELEETLERLEEAAELIQDGDMLWVAPVQGGTY 169 (487)
T ss_pred ccCCCCCCH----------------------------------HHHHHHHHHHHHHHHHHHHhhhccCccEEEEecCCCC
Confidence 554211000 00111113344564 222211 112333333 22
Q ss_pred ----HHHHHHHHHcCCcEEEEcCCC-CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 ----AEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ----~~~a~~~~~~G~d~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.|+.+.+.|.|++.+.|-. |..-.....-.+.|..+...++.+.|+..-| +.++.++..+.++|+|.+=...
T Consensus 170 ~dLR~~sa~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL~G-vG~P~~i~~~V~lGvDlFD~v~ 248 (487)
T PRK13533 170 PDLREESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHLFG-AGHPMMFALAVALGCDLFDSAA 248 (487)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEEeC-CCCHHHHHHHHHhCCCceeccH
Confidence 255888999999999984411 1000011223566777777776678888866 7899999999999999876666
Q ss_pred HHHHH
Q 017718 308 PVVYS 312 (367)
Q Consensus 308 ~~l~~ 312 (367)
|..++
T Consensus 249 ptr~A 253 (487)
T PRK13533 249 YALYA 253 (487)
T ss_pred HHHHH
Confidence 66654
No 459
>PRK02227 hypothetical protein; Provisional
Probab=85.27 E-value=4.4 Score=37.85 Aligned_cols=76 Identities=30% Similarity=0.249 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE-ecCCC-CHHHHH----HHHHcCCCEE
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-DGGVR-RGTDVF----KALALGASGI 303 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via-~GGI~-~~~dv~----kal~lGAd~V 303 (367)
+.+.++|..+.++|+|.|.+=|-.. -.-|-.....+++|++.++++.||-+ .|++- .+..+. .+-..|+|.|
T Consensus 7 vr~~eEA~~Al~~GaDiIDvK~P~~--GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyV 84 (238)
T PRK02227 7 VRNLEEALEALAGGADIIDVKNPKE--GSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYV 84 (238)
T ss_pred cCCHHHHHHHHhcCCCEEEccCCCC--CCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEE
Confidence 3678999999999999999976211 01123455678888888877788888 45543 333332 3333699999
Q ss_pred Eech
Q 017718 304 FIGR 307 (367)
Q Consensus 304 ~ig~ 307 (367)
=+|-
T Consensus 85 KvGl 88 (238)
T PRK02227 85 KVGL 88 (238)
T ss_pred EEcC
Confidence 9985
No 460
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=85.21 E-value=2.1 Score=38.62 Aligned_cols=73 Identities=25% Similarity=0.269 Sum_probs=46.5
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHH-HcCCCEEE
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKAL-ALGASGIF 304 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal-~lGAd~V~ 304 (367)
++.+.++++.+.++|+|+|-+--... ....-+.+...++.+.++. .++|+.+..+ +++.+.. .+|+|+|+
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~~---s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~---~~i~~ia~~~~~d~Vq 78 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAPK---SPRYVSPEQAREIVAALPPFVKRVGVFVNEDL---EEILEIAEELGLDVVQ 78 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCCC---CCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCH---HHHHHHHHhcCCCEEE
Confidence 34789999999999999997742111 0111134445556555542 5788887753 4333333 57999999
Q ss_pred ech
Q 017718 305 IGR 307 (367)
Q Consensus 305 ig~ 307 (367)
++.
T Consensus 79 lhg 81 (203)
T cd00405 79 LHG 81 (203)
T ss_pred ECC
Confidence 994
No 461
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=85.09 E-value=17 Score=33.64 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHcCCcEEEEcC---CCCC-CCCCccchHHH---HHHHHHH---hcCC-CcEEEecCCCCHHHHHHHHH-
Q 017718 230 VLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPATIMA---LEEVVKA---TQGR-IPVFLDGGVRRGTDVFKALA- 297 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~---~gg~-~~~~~~~~~~~---l~~i~~~---~~~~-~~via~GGI~~~~dv~kal~- 297 (367)
|.+.++|+.+.++|+|.|+.+- .||. ....+.+..++ +..+.++ ++.+ +++.--|=|.+++|..--+.
T Consensus 163 V~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~ 242 (276)
T COG5564 163 VFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDR 242 (276)
T ss_pred ecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhh
Confidence 5789999999999999988732 2332 11223332222 2222222 2222 56666677999999886665
Q ss_pred -cCCCEEEech
Q 017718 298 -LGASGIFIGR 307 (367)
Q Consensus 298 -lGAd~V~ig~ 307 (367)
-|+|+..=++
T Consensus 243 c~~~~gfygas 253 (276)
T COG5564 243 CPGCDGFYGAS 253 (276)
T ss_pred CCCCCcccccc
Confidence 4888775444
No 462
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=84.56 E-value=2.7 Score=41.42 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=44.9
Q ss_pred HHHHHH--cCCcEEEEcCCCCC----CCC------CccchHHHHHHHHHHhcCCCcEEE-ecCCCCHHHHHH----HHHc
Q 017718 236 ARIAVQ--AGAAGIIVSNHGAR----QLD------YVPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALAL 298 (367)
Q Consensus 236 a~~~~~--~G~d~i~vs~~gg~----~~~------~~~~~~~~l~~i~~~~~~~~~via-~GGI~~~~dv~k----al~l 298 (367)
++.+.+ .|+|.+-+--.+.- ..+ +.....+.+.++.+.. .+|++. +||+ +.+++.+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 566674 99999998432210 011 1111224456665554 677766 7777 6666665 4457
Q ss_pred CC--CEEEechHHHH
Q 017718 299 GA--SGIFIGRPVVY 311 (367)
Q Consensus 299 GA--d~V~ig~~~l~ 311 (367)
|| .+|.+||....
T Consensus 267 Ga~f~Gvl~GRniwq 281 (340)
T PRK12858 267 GADFSGVLCGRATWQ 281 (340)
T ss_pred CCCccchhhhHHHHh
Confidence 99 99999997755
No 463
>PRK12346 transaldolase A; Provisional
Probab=84.40 E-value=13 Score=36.36 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=62.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-------------CccchHHHHHHHHHHh---cCCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT---QGRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~---~~~~~via~G 284 (367)
-++++-+-.+.+.+.+..+.++|++.|... =||-.+ .+.+-...+.++.+.. +.+..|++ .
T Consensus 148 ~GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~-A 224 (316)
T PRK12346 148 EGINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMG-A 224 (316)
T ss_pred CCCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEe-c
Confidence 388998888999999999999999988763 232111 1233444555555443 22444444 5
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
.+|+..++. ...|+|.+-|.-.++-.+..
T Consensus 225 SfRn~~qi~--alaG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 225 SFRRTEQIL--ALAGCDRLTISPNLLKELQE 253 (316)
T ss_pred ccCCHHHHH--HHhCCCEEeCCHHHHHHHHh
Confidence 599999998 34699999999888776543
No 464
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=84.11 E-value=56 Score=34.26 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=30.6
Q ss_pred CCCcEEEecCCCCHHHHHHHHH------cC-----CCEEEechHHHHH
Q 017718 276 GRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 312 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~------lG-----Ad~V~ig~~~l~~ 312 (367)
+++.+|+-|||.+++|...+|. .| -|++.+|+..|..
T Consensus 212 ~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 212 DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 4799999999999999998773 33 4899999988753
No 465
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=83.97 E-value=4.6 Score=37.72 Aligned_cols=73 Identities=29% Similarity=0.369 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcC--CCcEEEecCCCCHHHHH--HHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVF--KALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~--~~~via~GGI~~~~dv~--kal~lGAd~V~ig 306 (367)
..||.++++.|+|+|++.|+|-.-+ +-++.+..+...+.+.+.. .+||=.+= ++|..-.. -|.+.||+++=+-
T Consensus 37 ~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNV-LrNd~vaA~~IA~a~gA~FIRVN 115 (263)
T COG0434 37 VRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNV-LRNDAVAALAIAYAVGADFIRVN 115 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeee-eccccHHHHHHHHhcCCCEEEEE
Confidence 3789999999999999999987532 4455555544334333211 45543221 23322222 2334699988643
No 466
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=83.85 E-value=13 Score=36.45 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHHHhhcC-CCEEEEec------CCHHHHHH-HHHcCCcEEEEcCCCC--CCCCCccchH----HHHHHHHHHhcCCCc
Q 017718 214 WKWLQTITK-LPILVKGV------LTAEDARI-AVQAGAAGIIVSNHGA--RQLDYVPATI----MALEEVVKATQGRIP 279 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v------~~~~~a~~-~~~~G~d~i~vs~~gg--~~~~~~~~~~----~~l~~i~~~~~~~~~ 279 (367)
++.+|+..+ .|+++-.- .+.+++.. ....++|++.+.-.-. .....+...+ +.|..+++.+ ++|
T Consensus 103 ~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~--~vP 180 (326)
T cd02811 103 FTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL--SVP 180 (326)
T ss_pred HHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc--CCC
Confidence 346777665 78766443 15565444 4447899998842110 0011222233 4566666665 799
Q ss_pred EEE--ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 280 VFL--DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 280 via--~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
|++ .|--.+.+++.+....|+|++.+..
T Consensus 181 VivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 181 VIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred EEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 998 3433667777777779999999854
No 467
>PLN02979 glycolate oxidase
Probab=83.77 E-value=2 Score=42.68 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+|+-|..+++.. ++|||+ .||.+.+|+.+++.+|+|+|.++.
T Consensus 210 ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 210 LSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 3667787787755 799888 668999999999999999999875
No 468
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=83.69 E-value=3.9 Score=36.49 Aligned_cols=79 Identities=24% Similarity=0.254 Sum_probs=49.0
Q ss_pred HHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
++.+.+.+.+||..|-. .+.-+|+.+...|+|+|.=|-- + .|.. --.-|-++ .-++|.+ .|-++-..+
T Consensus 63 I~eI~~aVsIPVMAK~RIGHfvEAqiLealgVD~IDESEV----L--TpAD--~~~HI~K~-~F~vPFV--cGarnLGEA 131 (208)
T PF01680_consen 63 IKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEV----L--TPAD--EENHIDKH-NFKVPFV--CGARNLGEA 131 (208)
T ss_dssp HHHHHHH-SSEEEEEEETT-HHHHHHHHHTT-SEEEEETT----S----S---SS----GG-G-SS-EE--EEESSHHHH
T ss_pred HHHHHHheEeceeeccccceeehhhhHHHhCCceeccccc----c--cccc--ccccccch-hCCCCeE--ecCCCHHHH
Confidence 34777888999999987 5678899999999999987531 1 0111 10112221 1156654 468899999
Q ss_pred HHHHHcCCCEE
Q 017718 293 FKALALGASGI 303 (367)
Q Consensus 293 ~kal~lGAd~V 303 (367)
+.-+.-||..+
T Consensus 132 LRRI~EGAaMI 142 (208)
T PF01680_consen 132 LRRIAEGAAMI 142 (208)
T ss_dssp HHHHHTT-SEE
T ss_pred HhhHHhhhhhh
Confidence 99999999865
No 469
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=83.68 E-value=7 Score=33.05 Aligned_cols=76 Identities=26% Similarity=0.255 Sum_probs=47.6
Q ss_pred cCCCEEEEec-CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc----CCCcEEEecCCCCHHHHHH
Q 017718 221 TKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 221 ~~~Pv~vK~v-~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~----~~~~via~GGI~~~~dv~k 294 (367)
.+.-|+--++ .++ +.++.+.+.++|.|.+|..-+ .+.+.++++.+.++ .+++|++ ||..-.+|..+
T Consensus 29 ~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~ 100 (132)
T TIGR00640 29 LGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDE 100 (132)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHH
Confidence 3555544444 344 447889999999999986322 12333333333332 2466666 76666788888
Q ss_pred HHHcCCCEEE
Q 017718 295 ALALGASGIF 304 (367)
Q Consensus 295 al~lGAd~V~ 304 (367)
..++|.|.+.
T Consensus 101 l~~~Gvd~~~ 110 (132)
T TIGR00640 101 LKEMGVAEIF 110 (132)
T ss_pred HHHCCCCEEE
Confidence 8899988774
No 470
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=83.45 E-value=19 Score=33.96 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH----
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---- 215 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---- 215 (367)
..++.+..+|++.++|.+- +..++|+
T Consensus 31 ~~~e~~a~~G~D~v~iD~E--------------------------------------------------Hg~~~~~~~~~ 60 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGE--------------------------------------------------HAPNDVSTFIP 60 (256)
T ss_pred HHHHHHHhcCCCEEEEccc--------------------------------------------------cCCCCHHHHHH
Q ss_pred --HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcC------------------CCCCCCCC--ccchHHHHHHHHH
Q 017718 216 --WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN------------------HGARQLDY--VPATIMALEEVVK 272 (367)
Q Consensus 216 --~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~------------------~gg~~~~~--~~~~~~~l~~i~~ 272 (367)
...+..+++.+|+.. .++..++++.+.|+++|++-. .|.|.... ....+...++..+
T Consensus 61 ~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~ 140 (256)
T PRK10558 61 QLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFA 140 (256)
T ss_pred HHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHH
Q ss_pred HhcCCCcEEE----ecCCCCHHHHHHHHHcCCCEEEech-HHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 273 ATQGRIPVFL----DGGVRRGTDVFKALALGASGIFIGR-PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 273 ~~~~~~~via----~GGI~~~~dv~kal~lGAd~V~ig~-~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
....++.|++ --|+.+-+++++. -|-|++++|. =+-..+...+... ..-+...+.++.......|..
T Consensus 141 ~an~~~~vi~~IEt~~av~ni~eI~av--~gvd~l~iG~~DLs~slG~~~~~~-~~~v~~a~~~v~~aa~~~G~~ 212 (256)
T PRK10558 141 QSNKNITVLVQIESQQGVDNVDAIAAT--EGVDGIFVGPSDLAAALGHLGNAS-HPDVQKAIQHIFARAKAHGKP 212 (256)
T ss_pred HhccccEEEEEECCHHHHHHHHHHhCC--CCCcEEEECHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHHHHcCCc
No 471
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=83.33 E-value=10 Score=37.58 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=58.4
Q ss_pred cHHHHHhhc-CCCEEEEec------CCHHH-HHHHHHcCCcEEEEcCCCCCC--CCCccchH----HHHHHHHHHhcCCC
Q 017718 213 SWKWLQTIT-KLPILVKGV------LTAED-ARIAVQAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQGRI 278 (367)
Q Consensus 213 ~~~~l~~~~-~~Pv~vK~v------~~~~~-a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~----~~l~~i~~~~~~~~ 278 (367)
++..+|+.. +.|+++=.- .+.+. .+.....++|++.+.-.-... ...+...+ +.|.++++.+ ++
T Consensus 110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~--~v 187 (352)
T PRK05437 110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL--PV 187 (352)
T ss_pred HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh--CC
Confidence 345778776 788877432 22444 445566789999984211111 11222233 4566666665 79
Q ss_pred cEEE--ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 279 PVFL--DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 279 ~via--~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
||++ .|.-.+.+++.++..+|+|++.++.
T Consensus 188 PVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 188 PVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 9998 5555677777777789999999854
No 472
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=83.24 E-value=24 Score=35.26 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.++.+.+.+.|+..+.|- .+ +......+.+..+...++.+.|...-| +.++.|++.+.++|.|.+=...|..
T Consensus 194 ~sa~~l~~~~~~GyaIGGl---~~ge~~~~~~~~l~~~~~~lP~~kPryl~G-vg~P~~i~~~v~~GvD~FD~~~ptr 267 (367)
T TIGR00449 194 QSAEGLAELDFDGYAIGGV---SVGEPKRDMLRILEHVAPLLPKDKPRYLMG-VGTPELLANAVSLGIDMFDCVAPTR 267 (367)
T ss_pred HHHHHHhhCCCCeEEEeCc---ccCCCHHHHHHHHHHHHhhCCcccceEecC-CCCHHHHHHHHHcCCCEEeeCCccc
Confidence 4477788889999998541 11 111223445555556666678888865 8899999999999999765555543
No 473
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=83.24 E-value=12 Score=36.61 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=90.9
Q ss_pred ceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCcee-ec--CCC--------------------------CC
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LS--SWS--------------------------TS 112 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs--~~~--------------------------~~ 112 (367)
..+|.|++|++.+++.---+. . ...+.++....|.-++ ++ -.. ..
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y~---s---~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKYK---D---FEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CeEECCEEEecceeEecCCCC---C---HHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCC
Confidence 478999999999988652221 1 2345555566665544 11 000 01
Q ss_pred CHHH------HHhhCCCceEEEEeecCCHH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHhhhhcCCCCcc
Q 017718 113 SVEE------VASTGPGIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (367)
Q Consensus 113 ~~e~------i~~~~~~~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~ 179 (367)
+-+| +++..-+..|+.|-.-.|+. ...+.+++++.. |+..+.+..|.|+.++|-.++.--.-.|-
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl-- 225 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL-- 225 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec--
Confidence 2222 11111245788875433321 244567777776 99999999999988777666631100120
Q ss_pred ccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
+.+ -+++.+ +. ++ -.++.+.+..++||++-- +.+++|+..+.+.|+|++-+
T Consensus 226 ----------~~p---IGsg~g--v~---~p-~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 226 ----------GAP---IGSGLG--IQ---NP-YTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred ----------ccc---ccCCCC--CC---CH-HHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 000 011100 00 11 123345555689988764 58899999999999999977
No 474
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=83.23 E-value=2.3 Score=42.63 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+|+.|.++++.. ++||++- ||.+.+|+.+++.+|+|+|.+..
T Consensus 240 ~tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 240 LTWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CCHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 3678888888766 7898885 79999999999999999999863
No 475
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=83.20 E-value=7 Score=38.77 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=61.1
Q ss_pred cHHHHHhhcCC-CEEEEecC----CHHHHHHHHHc-CCcE--EEEcCCCCCCCCC--------------ccchHHHHHHH
Q 017718 213 SWKWLQTITKL-PILVKGVL----TAEDARIAVQA-GAAG--IIVSNHGARQLDY--------------VPATIMALEEV 270 (367)
Q Consensus 213 ~~~~l~~~~~~-Pv~vK~v~----~~~~a~~~~~~-G~d~--i~vs~~gg~~~~~--------------~~~~~~~l~~i 270 (367)
.|+..++..+- |+++ .+- +.+++..+.++ |.|. |-+..+|. ++|. .--..+.+.++
T Consensus 192 A~~a~~~~~Pe~~~iv-lVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gd-l~DK~~~~~~~~~~~~~~~G~~~~l~~~v 269 (352)
T PRK07188 192 ACKAYHKTFPEDELIA-LVDYNNDVITDSLKVAREFGDKLKGVRVDTSKN-MIDKYFIRHPEVLGTFDPRGVNPELIKAL 269 (352)
T ss_pred HHHHHHHHCCCCCeEE-EEecCcccHHHHHHHHHHhCCCccEEEeCCcch-HhhhhcccccccccccccccccHHHHHHH
Confidence 45566665542 5543 332 56777777777 8776 76654322 2211 00245556666
Q ss_pred HHHh---c-CCCcEEEecCCCCHHHHHHHHHcC--CCEEEechHHHH
Q 017718 271 VKAT---Q-GRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPVVY 311 (367)
Q Consensus 271 ~~~~---~-~~~~via~GGI~~~~dv~kal~lG--Ad~V~ig~~~l~ 311 (367)
++.+ + .++.|+++||| +...+......| .|..+||+.+.-
T Consensus 270 r~~Ld~~g~~~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 270 RKALDENGGKHVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred HHHHhhCCCCCcEEEEeCCC-CHHHHHHHHHcCCCccEEecCccccc
Confidence 6554 2 36889999999 667788887889 599999997653
No 476
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=82.94 E-value=17 Score=35.60 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=62.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC-------------ccchHHHHHHHHHHh---cCCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT---QGRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~~~via~G 284 (367)
-++++-+-.+.+.+.+..+.++|++.|...- ||-.|| ..+....+.+|.+.. +.+..|+ ..
T Consensus 147 ~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFV--gRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im-~A 223 (317)
T TIGR00874 147 EGIHCNLTLLFSFVQAIACAEAKVTLISPFV--GRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVM-GA 223 (317)
T ss_pred CCCceeeeeecCHHHHHHHHHcCCCEEEeec--chHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEE-ee
Confidence 3899999899999999999999999887631 221110 123444555555443 2244444 45
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
.+|+..++.+ ..|||.+-|.-.++-.+.
T Consensus 224 SfRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 224 SFRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred ccCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 6999999997 569999999987776654
No 477
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=82.73 E-value=2.3 Score=42.57 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+|+-|.++++.. ++|||+ .||.+.+|+.+++.+|+|+|.++.
T Consensus 232 ltW~di~~lr~~~--~~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 232 ISWKDLEWIRDFW--DGPMVI-KGILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CCHHHHHHHHHhC--CCCEEE-EecCCHHHHHHHHhCCCCEEEECC
Confidence 4677888888877 789887 679999999999999999998764
No 478
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=82.53 E-value=11 Score=37.12 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
+.+...+++++++++|++.+.|+.+.... +.. .. . ....+.
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~~-~~-----------------------~--~~~~~~ 265 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------ARI-DV-----------------------Y--PGYQVP 265 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CCC-CC-----------------------C--ccccHH
Confidence 56777788899999999998887664210 000 00 0 000112
Q ss_pred H-HHHHhhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 017718 214 W-KWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 214 ~-~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G-~d~i~v 249 (367)
+ +.+|+.+++||+.-+. .++++++.+++.| +|.|.+
T Consensus 266 ~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 266 FAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred HHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 2 2788888999887665 5799999999887 898766
No 479
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=82.32 E-value=12 Score=36.67 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=27.0
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~v 249 (367)
.+++..++||+..+- .+.+++..+...|||++.+
T Consensus 184 ~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 184 QVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred HHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 788888999999885 7888999999999999998
No 480
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=82.31 E-value=14 Score=36.33 Aligned_cols=102 Identities=21% Similarity=0.220 Sum_probs=60.0
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.|+.|.+.-+.+.+.++++.++++|+++++++=-.+ . + +. +.-| .. .+ ..+.-++.
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~-~--~--~~---~~~~-~~--~~---------~~GGlSG~-- 268 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTV-S--R--SL---VQGP-KN--SD---------ETGGLSGK-- 268 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCC-c--c--cc---ccCc-cc--cC---------CCCcccCH--
Confidence 57899987666666788899999999999998643221 0 1 00 0000 00 00 00000110
Q ss_pred HhhhccCccccHH-HHHhhc--CCCEE-EEecCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK-WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~-~l~~~~--~~Pv~-vK~v~~~~~a~~~~~~G~d~i~v 249 (367)
.+. ...+.|- .+++.. ++||+ +.++.+.+||.....+||+.+.+
T Consensus 269 ~i~---p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv 316 (335)
T TIGR01036 269 PLQ---DKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQI 316 (335)
T ss_pred HHH---HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHh
Confidence 111 1122332 555555 58988 45579999999999999999877
No 481
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=82.19 E-value=9.4 Score=36.30 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=54.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH-H---HHHHHHhcCCC-cEEEecCCC----C
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRI-PVFLDGGVR----R 288 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~~-~via~GGI~----~ 288 (367)
+-|+++=.+-+.-.|+.+.++|+|.|.++...+. ..|.++-+++- + +.+++.. +. +|++|-+.. +
T Consensus 14 g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vvaD~pfg~y~~~ 91 (264)
T PRK00311 14 GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVVADMPFGSYQAS 91 (264)
T ss_pred CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEEEeCCCCCccCC
Confidence 4688888888899999999999999986422111 13444444433 3 3333332 45 488876544 4
Q ss_pred HHH----HHHHHH-cCCCEEEe
Q 017718 289 GTD----VFKALA-LGASGIFI 305 (367)
Q Consensus 289 ~~d----v~kal~-lGAd~V~i 305 (367)
.++ +.+.+. .||++|-|
T Consensus 92 ~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 92 PEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 466 467777 89999999
No 482
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=82.04 E-value=6.7 Score=37.73 Aligned_cols=81 Identities=26% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCCEEEEecCCHHHHHHHHHc---------CCcEEEEcCCCCC----CCCCccchH----HHHHHHHHHhcCCCcEEEe-
Q 017718 222 KLPILVKGVLTAEDARIAVQA---------GAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLD- 283 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~---------G~d~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~~via~- 283 (367)
+.|+++-++-+.-.|+.+.++ |.++|.+|+++=. ..|.+.-++ +.+..|...+ .+||++|
T Consensus 8 ~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~--~~Pv~~D~ 85 (285)
T TIGR02320 8 KPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVT--TKPIILDG 85 (285)
T ss_pred CCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhc--CCCEEEec
Confidence 457888888888899999999 9999999875411 234443333 2344555544 7999984
Q ss_pred -cCCCCHHHHH----HHHHcCCCEEEe
Q 017718 284 -GGVRRGTDVF----KALALGASGIFI 305 (367)
Q Consensus 284 -GGI~~~~dv~----kal~lGAd~V~i 305 (367)
+| .++..+. +....|+.++.|
T Consensus 86 d~G-g~~~~v~r~V~~l~~aGvaGi~i 111 (285)
T TIGR02320 86 DTG-GNFEHFRRLVRKLERRGVSAVCI 111 (285)
T ss_pred CCC-CCHHHHHHHHHHHHHcCCeEEEE
Confidence 57 6888863 445589999999
No 483
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=81.99 E-value=21 Score=38.32 Aligned_cols=200 Identities=18% Similarity=0.145 Sum_probs=107.4
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCC----CCCHHHHHhh----------CC---CceEEEEe
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS----TSSVEEVAST----------GP---GIRFFQLY 130 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~----~~~~e~i~~~----------~~---~~~~~QLy 130 (367)
-.+.+|.++ |.+ .. ....-..+..++.|+-+++++.- ....+++... .| +...||++
T Consensus 21 g~i~TP~fm-PV~-~~----~vk~~~~~~l~~~g~~~il~NtYhl~~~pg~~~~~~~gGlH~f~~w~g~ilTDSGgfQv~ 94 (639)
T PRK13534 21 KKIETPTIM-PVI-NP----KKQTVDPDEIKKLGFDIVITNSYIIYKTPELREKALEKGIHSLIGFDGPIMTDSGSFQLS 94 (639)
T ss_pred eeeeCCcee-ecc-cc----hhcccCHHHHHHhCCCEEEehhhhhhhCCchhHHHhcCChHHHhCCCCCeEecCCceeee
Confidence 456777665 443 11 11112334456899888886431 1122333321 11 45779999
Q ss_pred ecCCHHHHH-HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 131 VYKDRNVVA-QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 131 ~~~d~~~~~-~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
...+...+- +.++--++.|++.+ +.+|-|.+.. .. .+......+
T Consensus 95 s~g~~~~tpe~~i~~Q~~iGsDI~-~~LD~~t~~~--------------~~--------------------~~~a~~sv~ 139 (639)
T PRK13534 95 VYGDVEVTNREIIEFQEKIGVDIG-TILDIPTPPD--------------VS--------------------REKAEEDLE 139 (639)
T ss_pred ecCccccCHHHHHHHHHHhCCCEE-EECCcCCCCC--------------CC--------------------HHHHHHHHH
Confidence 877655443 34455566898865 4567554200 00 000111113
Q ss_pred ccccHH-HHHhhcCCCEEEEec---CC----HHHHHHHHHcCCcEEEEcCCCCCC-CCCcc---chHHHHHHHHHHhcCC
Q 017718 210 RSLSWK-WLQTITKLPILVKGV---LT----AEDARIAVQAGAAGIIVSNHGARQ-LDYVP---ATIMALEEVVKATQGR 277 (367)
Q Consensus 210 ~~~~~~-~l~~~~~~Pv~vK~v---~~----~~~a~~~~~~G~d~i~vs~~gg~~-~~~~~---~~~~~l~~i~~~~~~~ 277 (367)
.++.|. ...+..+...+...+ .. .+.|+.+.+.|.|++.+.| .. ..... ...+.|..+...++.+
T Consensus 140 rT~~wa~~~~~~~~~~~lfgiVQGg~~~dLR~~sa~~l~~~~f~g~aIGG---~v~~~e~~~~~~lv~~i~~~~~~LP~d 216 (639)
T PRK13534 140 ETLERAKEAIEIKEKLALNGTVQGSTYPDLRQKSAEEMSKMNFDIYPIGA---VVPLMESYRYRDLVDIIINSKMHLPTN 216 (639)
T ss_pred HHHHHHHHHHhhhhcCcEEEeecCCCCHHHHHHHHHHHHhCCCCeEEEcC---cchHHhhhhHHHHHHHHHHHHhhCCCC
Confidence 344553 222222212333333 22 2558888999999998843 21 00000 1223333455666667
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 278 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.|...-| +.++.++..+.++|+|.+=...|..++
T Consensus 217 kPryL~G-vG~P~~i~~~V~lGvD~FD~v~ptr~A 250 (639)
T PRK13534 217 KPVHLFG-AGHPMFFALAVALGCDLFDSAAYALYA 250 (639)
T ss_pred CCeEEeC-CCCHHHHHHHHHhCCCceeccHHHHHH
Confidence 8888866 889999999999999987666666664
No 484
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=81.87 E-value=29 Score=33.62 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=29.8
Q ss_pred HHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
.+++.+++||+.-+ +.+.+++..+...|+|++.+.
T Consensus 155 ~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 155 QVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 67777789999887 478899999999999999984
No 485
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=81.86 E-value=2.6 Score=41.98 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+|+-|..+++.. ++|||+ .||.+++|+.+++.+|+|+|.+..
T Consensus 212 tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 667778787765 799888 568999999999999999999875
No 486
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=81.68 E-value=41 Score=34.06 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=50.3
Q ss_pred CEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCCHHHH--HHH---H
Q 017718 224 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDV--FKA---L 296 (367)
Q Consensus 224 Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~GGI~~~~dv--~ka---l 296 (367)
++-.-...+.+|+++....|+.-+.++| .--.|..+ .....+...+..+++.-|+++.++-+.|+|- +++ |
T Consensus 177 ~i~li~aQse~D~~Rf~~LGa~~v~v~G--NlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~GEeei~l~~~~~l 254 (419)
T COG1519 177 NIDLILAQSEEDAQRFRSLGAKPVVVTG--NLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTHEGEEEIILDAHQAL 254 (419)
T ss_pred hcceeeecCHHHHHHHHhcCCcceEEec--ceeecCCCChhhHHHHHHHHHhcCCCCceEEEecCCCchHHHHHHHHHHH
Confidence 3333345899999999999999977654 32233332 2333455555666543578887888888874 233 3
Q ss_pred H-c--CCCEEEech
Q 017718 297 A-L--GASGIFIGR 307 (367)
Q Consensus 297 ~-l--GAd~V~ig~ 307 (367)
. . ++-.+.+-|
T Consensus 255 ~~~~~~~llIlVPR 268 (419)
T COG1519 255 KKQFPNLLLILVPR 268 (419)
T ss_pred HhhCCCceEEEecC
Confidence 2 2 455666666
No 487
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=81.54 E-value=40 Score=30.35 Aligned_cols=83 Identities=14% Similarity=-0.003 Sum_probs=48.0
Q ss_pred HHHhhcCCCEE--EEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPIL--VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~--vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
++++..+.|+. ++.-...+....+.++|+|++.+ |++.. ......++.+++ . .+.+..+-+-.+..+..
T Consensus 55 ~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~t~~e~~ 125 (220)
T PRK05581 55 AIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNPATPLEPL 125 (220)
T ss_pred HHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECCCCCHHHH
Confidence 55554443432 22222234567778999999999 55421 112233433332 2 44444444556778888
Q ss_pred HHHHcCCCEEEech
Q 017718 294 KALALGASGIFIGR 307 (367)
Q Consensus 294 kal~lGAd~V~ig~ 307 (367)
+.+..++|.+.+++
T Consensus 126 ~~~~~~~d~i~~~~ 139 (220)
T PRK05581 126 EDVLDLLDLVLLMS 139 (220)
T ss_pred HHHHhhCCEEEEEE
Confidence 88877899988875
No 488
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=81.43 E-value=5.3 Score=34.56 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH-----HHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF-----KALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~-----kal~lGAd~V~ig~ 307 (367)
.++++.+.+.|++.+.+...............+.+..+.+.. .+|+++...+.+..+.. .+..+|+|.|.+.-
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 567888999999999886533221111111113344554444 68999998887777755 56678999999986
Q ss_pred H
Q 017718 308 P 308 (367)
Q Consensus 308 ~ 308 (367)
.
T Consensus 93 ~ 93 (200)
T cd04722 93 A 93 (200)
T ss_pred c
Confidence 3
No 489
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=81.42 E-value=3.1 Score=41.42 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+++.|.++++.. +.|||.- ||.+++|+.+++.+|+|+|.++
T Consensus 224 ~w~~i~~ir~~~--~~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLW--PHKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhC--CCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 577888888876 6788887 4999999999999999999876
No 490
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=81.36 E-value=10 Score=36.71 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcE---EEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~v---ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
++...++|||.|.+. | +.+.+.+.++.+.+ +.|+ +..||-.-...+...-.+|.+.|..+...+++
T Consensus 171 a~aY~eAGAD~ifi~--~-------~~~~~ei~~~~~~~--~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 171 SREYVAAGADCIFLE--A-------MLDVEEMKRVRDEI--DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHhCCCEEEec--C-------CCCHHHHHHHHHhc--CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 567789999999983 2 34566777777777 3455 34444322234556667899999999877765
Q ss_pred h
Q 017718 313 L 313 (367)
Q Consensus 313 l 313 (367)
.
T Consensus 240 a 240 (294)
T TIGR02319 240 A 240 (294)
T ss_pred H
Confidence 3
No 491
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=81.29 E-value=13 Score=34.55 Aligned_cols=76 Identities=28% Similarity=0.278 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe-cCCC-CHHHHH----HHHHcCCCEE
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-GGVR-RGTDVF----KALALGASGI 303 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~-GGI~-~~~dv~----kal~lGAd~V 303 (367)
+.+.++|..+.+.|+|.|.+=|-....+ |-.....+++|++.++++.||-+. |.+- .+..+. .+...|+|.|
T Consensus 7 v~~~~EA~~a~~~gaDiID~K~P~~GaL--GA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~Gvdyv 84 (235)
T PF04476_consen 7 VRNVEEAEEALAGGADIIDLKNPAEGAL--GALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYV 84 (235)
T ss_pred CCCHHHHHHHHhCCCCEEEccCCCCCCC--CCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999976321111 223456678888888777888874 4443 233332 2344799999
Q ss_pred Eech
Q 017718 304 FIGR 307 (367)
Q Consensus 304 ~ig~ 307 (367)
=+|-
T Consensus 85 KvGl 88 (235)
T PF04476_consen 85 KVGL 88 (235)
T ss_pred EEec
Confidence 9984
No 492
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=81.27 E-value=14 Score=33.06 Aligned_cols=79 Identities=25% Similarity=0.281 Sum_probs=54.0
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--------CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--------GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--------gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
..+.-||+ .+.++|.|+.+.++|+=++.+.-. ||- ...+....+.+|.+++ .+||++--.|..-..
T Consensus 12 mlkGGVIM-DV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGV---aRMsDP~~I~eI~~aV--sIPVMAK~RIGHfvE 85 (208)
T PF01680_consen 12 MLKGGVIM-DVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPKMIKEIMDAV--SIPVMAKVRIGHFVE 85 (208)
T ss_dssp TTTTEEEE-EESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS------S--HHHHHHHHHH---SSEEEEEEETT-HHH
T ss_pred HhcCCeEE-EecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCc---cccCCHHHHHHHHHhe--Eeceeeccccceeeh
Confidence 34455655 578999999999999999887431 221 1245677899999988 899999999988877
Q ss_pred HHHHHHcCCCEEE
Q 017718 292 VFKALALGASGIF 304 (367)
Q Consensus 292 v~kal~lGAd~V~ 304 (367)
+.-.-++|.|.+=
T Consensus 86 AqiLealgVD~ID 98 (208)
T PF01680_consen 86 AQILEALGVDYID 98 (208)
T ss_dssp HHHHHHTT-SEEE
T ss_pred hhhHHHhCCceec
Confidence 7666678999763
No 493
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=80.83 E-value=38 Score=33.70 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=73.4
Q ss_pred cccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEec
Q 017718 78 PTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (367)
Q Consensus 78 Pm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itv 157 (367)
|-++.++.. ++-..+.+.|.++|++++.+-+.....+.+.+.. -++|+-.. + -...++++.+.+.|-..+ +.-
T Consensus 160 p~~f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~v---d~lkI~s~-~-~~n~~LL~~~a~~gkPVi-lk~ 232 (360)
T PRK12595 160 PYDFQGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDYV---DVIQIGAR-N-MQNFELLKAAGRVNKPVL-LKR 232 (360)
T ss_pred CccccCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhC---CeEEECcc-c-ccCHHHHHHHHccCCcEE-EeC
Confidence 334444332 4556899999999999887666655666555442 25555321 1 111345555555544322 222
Q ss_pred CCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEec--CC
Q 017718 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGV--LT 232 (367)
Q Consensus 158 d~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v--~~ 232 (367)
+. . --..|+..... .+...+-..+. +.+ ++ ...+- .....+++|. .+++.+++||++=-. ..
T Consensus 233 G~--~-~t~~e~~~Ave---~i~~~Gn~~i~---L~e-rg--~s~yp-~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G 299 (360)
T PRK12595 233 GL--S-ATIEEFIYAAE---YIMSQGNGQII---LCE-RG--IRTYE-KATRNTLDISAVPILKQETHLPVMVDVTHSTG 299 (360)
T ss_pred CC--C-CCHHHHHHHHH---HHHHCCCCCEE---EEC-Cc--cCCCC-CCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCc
Confidence 21 0 01112221110 00000000000 000 00 00000 0001234554 788888999987222 11
Q ss_pred -----HHHHHHHHHcCCcEEEEcCCC
Q 017718 233 -----AEDARIAVQAGAAGIIVSNHG 253 (367)
Q Consensus 233 -----~~~a~~~~~~G~d~i~vs~~g 253 (367)
+..+..+..+||||+++--|-
T Consensus 300 ~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 300 RRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred chhhHHHHHHHHHHcCCCeEEEEecC
Confidence 235778899999999986665
No 494
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=80.71 E-value=37 Score=29.49 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=29.8
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
++++..++||++-+..+.+.+..+.++|+|++.+.
T Consensus 144 ~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 144 EIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 55555689999988888899999999999999884
No 495
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=80.65 E-value=56 Score=31.44 Aligned_cols=110 Identities=21% Similarity=0.316 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHc-CCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC-CHHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQA-GAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~~-G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~-~~~dv~kal~lGAd~V~i 305 (367)
.++++|+...+. |+|.+-++- ||-+....-.-.++.|.++.+.+ ++|+..=||=. .-+++.|++.+|-.-|=|
T Consensus 156 tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~--~~PlVlHGgSGip~~eI~~aI~~GV~KvNi 233 (286)
T COG0191 156 TDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV--SLPLVLHGGSGIPDEEIREAIKLGVAKVNI 233 (286)
T ss_pred CCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHhCceEEee
Confidence 356777666555 699998752 56543311223678899999888 59988877543 347899999999999999
Q ss_pred chHHHHHhhc-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G-----~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
.|-+-++... +. + .-+....+.+++-++.-|..+|+.
T Consensus 234 ~Td~~~A~~~avr~~~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs~ 283 (286)
T COG0191 234 DTDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGSA 283 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9976554321 01 1 123334456666666777777764
No 496
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=80.61 E-value=24 Score=35.07 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCHHHHHHHHH-c----CCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhc--CCCc------EEEecCCCCH-HHHH
Q 017718 231 LTAEDARIAVQ-A----GAAGIIVSN---HGARQLDYVPATIMALEEVVKATQ--GRIP------VFLDGGVRRG-TDVF 293 (367)
Q Consensus 231 ~~~~~a~~~~~-~----G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~--~~~~------via~GGI~~~-~dv~ 293 (367)
.++++|+...+ . |+|.+.++- ||-+....-.-.++.|.+|.+.+. .++| +..=||=..+ +++.
T Consensus 195 TdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~ 274 (357)
T TIGR01520 195 TQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIK 274 (357)
T ss_pred CCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHH
Confidence 57888887765 3 899998863 564321111236788999954321 1566 8887765555 8899
Q ss_pred HHHHcCCCEEEechHHHHH
Q 017718 294 KALALGASGIFIGRPVVYS 312 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~~ 312 (367)
|++.+|-.-|=++|-+.++
T Consensus 275 kai~~GI~KINi~Tdl~~A 293 (357)
T TIGR01520 275 EALSYGVVKMNIDTDTQWA 293 (357)
T ss_pred HHHHCCCeEEEeCcHHHHH
Confidence 9999999999999987664
No 497
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=80.57 E-value=27 Score=33.03 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=26.9
Q ss_pred HHHhhcCCCEEE-Ee-cCC-----HHHHHHHHHcCCcEEEEcCC
Q 017718 216 WLQTITKLPILV-KG-VLT-----AEDARIAVQAGAAGIIVSNH 252 (367)
Q Consensus 216 ~l~~~~~~Pv~v-K~-v~~-----~~~a~~~~~~G~d~i~vs~~ 252 (367)
.+|+.++.||++ -. ... ...+..+...|+++|++--|
T Consensus 188 ~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 188 VLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred HHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeC
Confidence 777778899987 22 122 56688899999999887555
No 498
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=80.52 E-value=4.7 Score=38.23 Aligned_cols=83 Identities=25% Similarity=0.268 Sum_probs=47.1
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC----------ccc---hHHHHHHHHHHhcCCCcEEEecC---
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY----------VPA---TIMALEEVVKATQGRIPVFLDGG--- 285 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~----------~~~---~~~~l~~i~~~~~~~~~via~GG--- 285 (367)
+.||+--+..+.-.|+.+.+.|+|.|++-|.|.....+ +-+ ..+.-.++...+ .+.||++-=.
T Consensus 14 ~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v-~~tPViaGv~atD 92 (268)
T PF09370_consen 14 GKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVV-KDTPVIAGVCATD 92 (268)
T ss_dssp T--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG--SSS-EEEEE-TT-
T ss_pred CCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhc-cCCCEEEEecCcC
Confidence 58999888899999999999999999998865432211 111 223334444333 3699998322
Q ss_pred -CCCHHHHHHHHH-cCCCEEEe
Q 017718 286 -VRRGTDVFKALA-LGASGIFI 305 (367)
Q Consensus 286 -I~~~~dv~kal~-lGAd~V~i 305 (367)
.++-...++-|. +|..+|+=
T Consensus 93 P~~~~~~fl~~lk~~Gf~GV~N 114 (268)
T PF09370_consen 93 PFRDMDRFLDELKELGFSGVQN 114 (268)
T ss_dssp TT--HHHHHHHHHHHT-SEEEE
T ss_pred CCCcHHHHHHHHHHhCCceEEE
Confidence 244455555554 89998874
No 499
>PRK15063 isocitrate lyase; Provisional
Probab=80.50 E-value=13 Score=37.71 Aligned_cols=86 Identities=23% Similarity=0.282 Sum_probs=55.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC--C------C-CCCCccchHH----HHHHHHHHhc--------C----
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--A------R-QLDYVPATIM----ALEEVVKATQ--------G---- 276 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g--g------~-~~~~~~~~~~----~l~~i~~~~~--------~---- 276 (367)
+.++..=++.++-.|..+.++|.++|.+|+.+ . . ..|.+.-+.+ .+.+|.+++. .
T Consensus 62 ~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~~d~~~~~~~~~~ 141 (428)
T PRK15063 62 EPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRRADQIQWSEGDKG 141 (428)
T ss_pred CCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHHhhhHhhhhcccc
Confidence 45676667889999999999999999998743 1 1 1244433333 3344443331 0
Q ss_pred --C--CcEEEec--CCCCHHHH---HHH-HHcCCCEEEech
Q 017718 277 --R--IPVFLDG--GVRRGTDV---FKA-LALGASGIFIGR 307 (367)
Q Consensus 277 --~--~~via~G--GI~~~~dv---~ka-l~lGAd~V~ig~ 307 (367)
+ +|||+|+ |..+...+ +|. +..||.+|.|--
T Consensus 142 ~~d~~~PIiADaDtGfGg~~nv~~~vk~~ieAGaAGIhiED 182 (428)
T PRK15063 142 YIDYFAPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFED 182 (428)
T ss_pred cccCCCCeEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 2 8999976 66666655 343 458999998854
No 500
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=80.04 E-value=16 Score=34.31 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=43.9
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-c-
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-L- 298 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-l- 298 (367)
.++.++ -...+.+.+..+.+.|++++-+.. +-...+..|..+++ ...|||.+-|..+-+++.+++. +
T Consensus 68 ~gi~f~-stpfd~~s~d~l~~~~~~~~KIaS-------~dl~n~~lL~~~A~---tgkPvIlSTG~stl~EI~~Av~~~~ 136 (241)
T PF03102_consen 68 LGIDFF-STPFDEESVDFLEELGVPAYKIAS-------GDLTNLPLLEYIAK---TGKPVILSTGMSTLEEIERAVEVLR 136 (241)
T ss_dssp TT-EEE-EEE-SHHHHHHHHHHT-SEEEE-G-------GGTT-HHHHHHHHT---T-S-EEEE-TT--HHHHHHHHHHHH
T ss_pred cCCEEE-ECCCCHHHHHHHHHcCCCEEEecc-------ccccCHHHHHHHHH---hCCcEEEECCCCCHHHHHHHHHHHH
Confidence 355443 355788999999999999999942 22345667776654 3799999999999999988876 4
Q ss_pred --CCCEE
Q 017718 299 --GASGI 303 (367)
Q Consensus 299 --GAd~V 303 (367)
|..-+
T Consensus 137 ~~~~~~l 143 (241)
T PF03102_consen 137 EAGNEDL 143 (241)
T ss_dssp HHCT--E
T ss_pred hcCCCCE
Confidence 65433
Done!