Query 017719
Match_columns 367
No_of_seqs 173 out of 987
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 9E-38 1.9E-42 293.0 13.2 170 177-346 46-219 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.8 8.8E-22 1.9E-26 152.5 4.9 68 273-340 1-68 (68)
3 KOG1944 Peroxisomal membrane p 73.9 9.1 0.0002 36.4 6.4 51 119-169 46-97 (222)
4 PF04639 Baculo_E56: Baculovir 36.9 57 0.0012 32.7 4.8 86 59-146 216-301 (305)
5 PF06027 DUF914: Eukaryotic pr 36.1 3.7E+02 0.0079 27.3 10.6 50 180-233 165-217 (334)
6 COG2271 UhpC Sugar phosphate p 36.0 3.4E+02 0.0074 28.9 10.5 176 117-339 15-207 (448)
7 cd07215 Pat17_PNPLA8_PNPLA9_li 35.8 32 0.00069 34.1 3.0 52 144-195 1-56 (329)
8 PF03116 NQR2_RnfD_RnfE: NQR2, 33.1 4.1E+02 0.009 26.7 10.3 91 115-241 9-100 (313)
9 PF05525 Branch_AA_trans: Bran 24.3 8.6E+02 0.019 25.6 12.3 103 115-222 211-320 (427)
10 COG4658 RnfD Predicted NADH:ub 23.3 8.3E+02 0.018 25.1 10.6 99 108-242 3-103 (338)
11 TIGR01946 rnfD electron transp 22.9 5.9E+02 0.013 25.9 9.4 86 117-238 6-93 (327)
12 KOG2888 Putative RNA binding p 22.6 7.9 0.00017 39.5 -3.9 31 149-179 153-184 (453)
13 COG1284 Uncharacterized conser 22.1 5E+02 0.011 25.9 8.6 58 179-238 110-186 (289)
14 PF07423 DUF1510: Protein of u 21.2 89 0.0019 30.0 3.0 27 117-143 4-30 (217)
15 PF02673 BacA: Bacitracin resi 20.8 7.2E+02 0.016 24.3 9.3 80 118-225 75-156 (259)
16 COG0534 NorM Na+-driven multid 20.8 9.5E+02 0.021 24.9 10.7 91 184-279 65-162 (455)
17 PF09726 Macoilin: Transmembra 20.3 2.9E+02 0.0064 30.9 7.2 27 306-334 86-112 (697)
18 PF10929 DUF2811: Protein of u 20.1 1.5E+02 0.0033 22.8 3.5 28 197-226 12-39 (57)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=9e-38 Score=292.99 Aligned_cols=170 Identities=32% Similarity=0.655 Sum_probs=161.1
Q ss_pred HhhCChhHHHHHHHHHH-HHHHHHHHhHhcCC---CCCcchHHHHHHHHHHhhhhhhHHhHHHHHHhhhcCCCCccchhh
Q 017719 177 LKTNPVLAKMVISGVVY-SLGDWIAQCFQGKP---LFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPA 252 (367)
Q Consensus 177 L~r~PLlTKaiTSGvL~-~lGD~iAQ~ie~k~---~~~~D~~Rt~rfal~G~~~~GPl~H~WY~~Ldrlfp~~s~~~vl~ 252 (367)
...+|+++++++++.+. .+||+++|.++++. ...+|+.|++||+++|+++.||..|+||++|++++|.+...+++.
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~ 125 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVK 125 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHH
Confidence 46789999999998888 99999999998765 578999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhHHHHhhccchhhHHHHhhhhcccCCchhhhhhHHHHHHHH
Q 017719 253 KVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVT 332 (367)
Q Consensus 253 KVllDQlV~sPi~~~~Ff~~~~lLeG~s~~ei~~klk~~y~ptL~asw~vWPpaq~INF~fVP~~~Rvlfvn~V~l~Wnt 332 (367)
|+++||++++|+.+.+||.+|++++|++.+++.++++++|+|+++++|++||++|++||+|||+++|++|+|+++++|++
T Consensus 126 kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~ 205 (222)
T KOG1944|consen 126 KVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNT 205 (222)
T ss_pred HHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhh
Q 017719 333 ILSTYSNEKSEARI 346 (367)
Q Consensus 333 yLS~i~n~~~e~~~ 346 (367)
|||+++++..+.+.
T Consensus 206 ~Ls~~~~~~~~~~~ 219 (222)
T KOG1944|consen 206 YLSYKNASLVELAG 219 (222)
T ss_pred HHHHHhhccccccc
Confidence 99999988744433
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.84 E-value=8.8e-22 Score=152.53 Aligned_cols=68 Identities=41% Similarity=0.778 Sum_probs=66.2
Q ss_pred HHHhcCCChhHHHHHHHHhhHHHHhhccchhhHHHHhhhhcccCCchhhhhhHHHHHHHHHHhhhccc
Q 017719 273 LGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNE 340 (367)
Q Consensus 273 ~~lLeG~s~~ei~~klk~~y~ptL~asw~vWPpaq~INF~fVP~~~Rvlfvn~V~l~WntyLS~i~n~ 340 (367)
|++++|++++++++++|++|+++++++|++|||+|++||.|||+++|++|+|+|+++|++|||+++|+
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=73.88 E-value=9.1 Score=36.39 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheeeeecccc-ccchhHHHHHHhhhHHH
Q 017719 119 EEMERLIDRTINATIVLAVGTFAITKLLTIDQDY-WHGWTIFEIVRYAPLHN 169 (367)
Q Consensus 119 ~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~-~~Gwt~~eil~~~p~~l 169 (367)
.+..+++.+.+++.++...++.++.+.+++++++ +++|.+..++|.++-..
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~ 97 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGF 97 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhh
Confidence 4678899999999999989999999999999999 89999999999998773
No 4
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=36.90 E-value=57 Score=32.75 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=44.3
Q ss_pred ccccccccCCCcccccCCceeeeccCccccccccccccccCCcccccCCCCcchhhhhcchHHHHHHHHHHHHHHHHHHH
Q 017719 59 ELDVLPVQSQDLTDMQEGVVVGREEDGELASQVSQVSGFSDGTLSFDGFSSASADERRGNEEMERLIDRTINATIVLAVG 138 (367)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iv~~~~ 138 (367)
-+|.-.-|--|..|-.++---.-.|.-.++.-++-.|. ++.+.-+|+.+.|+.+.....|+--=+=-.|-+.|+.+++
T Consensus 216 ~Adp~S~QYvDIS~L~~nqtI~CiEPYd~gDLIgDLGL--D~LLGe~Gl~~~SSnss~S~s~~l~piil~IG~vl~i~~I 293 (305)
T PF04639_consen 216 NADPDSPQYVDISDLAPNQTIQCIEPYDFGDLIGDLGL--DWLLGENGLITKSSNSSKSVSDSLLPIILIIGGVLLIVFI 293 (305)
T ss_pred CCCCCCcccccHHHcCCCCeEEEecCCcHHHHHHhccc--ccccCcccccccccCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 34544555555555555555555665555555555554 7777778887666644332222111111223334445556
Q ss_pred Hhhhheee
Q 017719 139 TFAITKLL 146 (367)
Q Consensus 139 ~~~~~~~~ 146 (367)
+|.|||.+
T Consensus 294 g~~ifK~~ 301 (305)
T PF04639_consen 294 GYFIFKRL 301 (305)
T ss_pred hheeeEee
Confidence 66666654
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=36.08 E-value=3.7e+02 Score=27.33 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=33.9
Q ss_pred CChhH--HHHHHHHHHHHHHHHHHhHhcCCCCCcchH-HHHHHHHHHhhhhhhHHhH
Q 017719 180 NPVLA--KMVISGVVYSLGDWIAQCFQGKPLFEFDRT-RMFRSGLVGFTLHGSLSHY 233 (367)
Q Consensus 180 ~PLlT--KaiTSGvL~~lGD~iAQ~ie~k~~~~~D~~-Rt~rfal~G~~~~GPl~H~ 233 (367)
+|++- =++.+++++++..++-.++-++ .|.. =...++++|+++.|+....
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~----~~~~~~lg~~Glfg~ii~~iq~~i 217 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKK----APRVEFLGMLGLFGFIISGIQLAI 217 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443 3678999999999987776543 2322 3567788888888877654
No 6
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=36.04 E-value=3.4e+02 Score=28.90 Aligned_cols=176 Identities=14% Similarity=0.083 Sum_probs=90.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCChhHHH--HHHHHHHH
Q 017719 117 GNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKM--VISGVVYS 194 (367)
Q Consensus 117 ~~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PLlTKa--iTSGvL~~ 194 (367)
+.+|.++..+|.-.=.++..+++|+.| ++.+.+.+.=...+.+.+-++|+ -.-+.++.
T Consensus 15 p~~~~~~~y~~~r~qif~~~fiGYa~f--------------------Yl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~ 74 (448)
T COG2271 15 PASEIDKTYKRWRIQIFLSIFIGYAAF--------------------YLTRKNFNLAMPALIEDGGLSKTQLGILGSAFS 74 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHH
Confidence 456778888888888888999999888 66666666555555555544333 33344444
Q ss_pred HHHHHHHhHhcCCCCCcchHHHHHHHHHHhhhhhhHHhHHHHHHhhhcCCCCccchhhHHHHhhhhhhhhHHHHHHHHHH
Q 017719 195 LGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLG 274 (367)
Q Consensus 195 lGD~iAQ~ie~k~~~~~D~~Rt~rfal~G~~~~GPl~H~WY~~Ldrlfp~~s~~~vl~KVllDQlV~sPi~~~~Ff~~~~ 274 (367)
++=-+++.+-+-= -|....-+|+.+|.+..|-. ...+.+.+ +-....++.+.++
T Consensus 75 i~YG~sKf~~G~~---sDr~npr~fm~~gLilsai~-nil~Gfs~----------------------s~~~~~~l~~lng 128 (448)
T COG2271 75 ITYGVSKFVMGVL---SDRSNPRYFMAFGLILSAIV-NILFGFSP----------------------SLFLFAVLWVLNG 128 (448)
T ss_pred HHHHHHHHHhhhh---cccCCCceeehHHHHHHHHH-HHHHhhhh----------------------HHHHHHHHHHHHH
Confidence 4444555544321 13333334555665544432 22222222 1123455667788
Q ss_pred HhcCCChhHHHHHHHHhhHHHHh-------------hccchhhHH--HHhhhhcccCCchhhhhhHHHHHHHHHHhhhcc
Q 017719 275 LLRLESPFSIFSELKATFWPMLT-------------AGWKLWPFA--HLVTYGLVPVEQRLLWVDCVELIWVTILSTYSN 339 (367)
Q Consensus 275 lLeG~s~~ei~~klk~~y~ptL~-------------asw~vWPpa--q~INF~fVP~~~Rvlfvn~V~l~WntyLS~i~n 339 (367)
+++|..+.-.-+.+-+=|.+.=+ .+-..+|.+ -.+++.+ --+.-..+-.+++++=..++-++..
T Consensus 129 ~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 129 WFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred HHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99987544333222222211111 222334444 3444443 2233344456677777666665543
No 7
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=35.80 E-value=32 Score=34.14 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=37.9
Q ss_pred eeeeeccccccchhHHHHHHhhhHHHHHHHH----HHHhhCChhHHHHHHHHHHHH
Q 017719 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYE----EALKTNPVLAKMVISGVVYSL 195 (367)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~----~~L~r~PLlTKaiTSGvL~~l 195 (367)
+||.+|.|=.||-....+|.++-.++-..+. +..+.-.+++-+-|+|+++++
T Consensus 1 rILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~~ 56 (329)
T cd07215 1 RILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCL 56 (329)
T ss_pred CEEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHHH
Confidence 5899999999999999999888876632221 233444577778788877653
No 8
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=33.14 E-value=4.1e+02 Score=26.65 Aligned_cols=91 Identities=10% Similarity=0.118 Sum_probs=65.4
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 017719 115 RRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYS 194 (367)
Q Consensus 115 ~~~~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PLlTKaiTSGvL~~ 194 (367)
-.++.+.++++...+-+++...+.+...| ||.. +-.++.+.+.+.
T Consensus 9 i~~~~~~~~~M~~VilaLlP~~~~~~~~f-----------G~~~------------------------l~~~~~av~~a~ 53 (313)
T PF03116_consen 9 IRDGRSTQKIMWDVILALLPALLASIYFF-----------GFRA------------------------LLVILVAVLTAV 53 (313)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----------hHHH------------------------HHHHHHHHHHHH
Confidence 34556778888888888888777776444 2222 557888899999
Q ss_pred HHHHHHHhHhcCCC-CCcchHHHHHHHHHHhhhhhhHHhHHHHHHhhh
Q 017719 195 LGDWIAQCFQGKPL-FEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEEL 241 (367)
Q Consensus 195 lGD~iAQ~ie~k~~-~~~D~~Rt~rfal~G~~~~GPl~H~WY~~Ldrl 241 (367)
+.|.+.|++.+|+. .-.|..-..--.++|++ .=|...+|.-++-..
T Consensus 54 l~E~l~~~l~~~~~~~~~d~sa~vTglLlal~-LP~~~P~w~v~ig~~ 100 (313)
T PF03116_consen 54 LAEALFAKLRKRPIPTLKDLSAVVTGLLLALL-LPPSVPLWVVAIGSF 100 (313)
T ss_pred HHHHHHHHHhcCCCCCCCCccHHHHHHHHHHh-CCCCCcHHHHHHHHH
Confidence 99999999988762 34577777777778877 466666776555444
No 9
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=24.27 E-value=8.6e+02 Score=25.65 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=69.7
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhhheeeeecccc-----ccchhHHHHHHhhhHHHHHHHHHHHhhCChhHHHHHH
Q 017719 115 RRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDY-----WHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVIS 189 (367)
Q Consensus 115 ~~~~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~-----~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PLlTKaiTS 189 (367)
..+.+|+++..+-.+.+.++.++....||--|..=.-. -+.=.-.|++.++..+++..+...+-.==+.-.|+|+
T Consensus 211 ~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTT 290 (427)
T PF05525_consen 211 QKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTT 290 (427)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 44556788999999999999999999999665431111 2223346788888888877777766665566666665
Q ss_pred --HHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHH
Q 017719 190 --GVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLV 222 (367)
Q Consensus 190 --GvL~~lGD~iAQ~ie~k~~~~~D~~Rt~rfal~ 222 (367)
|.+.+++|...+... ++.++..+...+.
T Consensus 291 aIGL~~a~a~yf~~~~~-----kisY~~~v~i~~i 320 (427)
T PF05525_consen 291 AIGLISACAEYFSELFP-----KISYKVWVIIFTI 320 (427)
T ss_pred HHHHHHHHHHHHHHHhc-----ccChHHHHHHHHH
Confidence 456777888777765 2566665554443
No 10
>COG4658 RnfD Predicted NADH:ubiquinone oxidoreductase, subunit RnfD [Energy production and conversion]
Probab=23.29 E-value=8.3e+02 Score=25.13 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=69.0
Q ss_pred CCcchhhhhcchHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCChhHHHH
Q 017719 108 SSASADERRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMV 187 (367)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PLlTKai 187 (367)
..++++-.......++++.--++|++-+.++..--| || + .+-+++
T Consensus 3 ~~~ssPh~h~~~~t~~im~~vi~A~lPa~~~a~yff-----------G~----------------g--------~L~~~~ 47 (338)
T COG4658 3 KMASSPHTHNQRLTTRIMLLVILALLPALAAAVYFF-----------GF----------------G--------TLIQIA 47 (338)
T ss_pred cCCCCccccchhHHHHHHHHHHHHHhHHHHHHHHHh-----------hH----------------H--------HHHHHH
Confidence 344555556667777777777777776655544222 11 1 245678
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCc--chHHHHHHHHHHhhhhhhHHhHHHHHHhhhc
Q 017719 188 ISGVVYSLGDWIAQCFQGKPLFEF--DRTRMFRSGLVGFTLHGSLSHYYYQFCEELF 242 (367)
Q Consensus 188 TSGvL~~lGD~iAQ~ie~k~~~~~--D~~Rt~rfal~G~~~~GPl~H~WY~~Ldrlf 242 (367)
.+.+.+.+.|.+.|++.+|+...+ |..-.+--.+.|.. .=|..-+|+-++-.+|
T Consensus 48 la~~~a~~~E~~~~~lrk~~~~~~l~D~salltgLLla~~-iPp~~P~w~~~ig~~f 103 (338)
T COG4658 48 LAILVALLLEALVLKLRKKSVTAFLPDGSALLTGLLLAVV-IPPLAPWWMTVIGTFF 103 (338)
T ss_pred HHHHHHHHHHHHHHHHhccCcccccCCccHHHHHHHHHhh-CCccchHHHHHHHHHH
Confidence 888899999999999988765556 77777777777777 4788888887776654
No 11
>TIGR01946 rnfD electron transport complex, RnfABCDGE type, D subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=22.89 E-value=5.9e+02 Score=25.90 Aligned_cols=86 Identities=9% Similarity=0.212 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Q 017719 117 GNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLG 196 (367)
Q Consensus 117 ~~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PLlTKaiTSGvL~~lG 196 (367)
++.+.++++...+.|++-....+.-.| || +.+..++.+.+.+.+.
T Consensus 6 ~~~~~~~iM~~VllALlP~~~~~i~~f-----------G~------------------------~al~~~~~~v~~av~~ 50 (327)
T TIGR01946 6 SGDSTRKIMRDVLIALLPGLAAQVYFF-----------GW------------------------GTLIQIALAILTALIL 50 (327)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-----------hH------------------------HHHHHHHHHHHHHHHH
Confidence 456778888888888877766665433 22 2233778888899999
Q ss_pred HHHHHhHhcCCCCCc--chHHHHHHHHHHhhhhhhHHhHHHHHH
Q 017719 197 DWIAQCFQGKPLFEF--DRTRMFRSGLVGFTLHGSLSHYYYQFC 238 (367)
Q Consensus 197 D~iAQ~ie~k~~~~~--D~~Rt~rfal~G~~~~GPl~H~WY~~L 238 (367)
|.+.|++.+|+.... |..-..--.++++.. =|..-+|.-.+
T Consensus 51 E~l~~~l~~k~~~~~~~D~Sa~vTglLlal~l-P~~~P~W~~~i 93 (327)
T TIGR01946 51 EAAILKLRKRSIKAFLKDGSAILTGLLLAVAI-PPLAPWWMIVI 93 (327)
T ss_pred HHHHHHHhCCCCccccCCccHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 999999998764333 777776667777663 44444554444
No 12
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=22.61 E-value=7.9 Score=39.48 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred ccccccchhHHHH-HHhhhHHHHHHHHHHHhh
Q 017719 149 DQDYWHGWTIFEI-VRYAPLHNWTAYEEALKT 179 (367)
Q Consensus 149 d~~~~~Gwt~~ei-l~~~p~~lw~~Y~~~L~r 179 (367)
|+.|.|+.-+-.| -.-.|.+||.||+-.|..
T Consensus 153 dSpYIRalGFmYiRYtqpp~dLw~WyEpyldD 184 (453)
T KOG2888|consen 153 DSPYIRALGFMYIRYTQPPADLWDWYEPYLDD 184 (453)
T ss_pred CchhhhhheeeEEeecCChhHHHHHhhhhccc
Confidence 6777776654333 123468999999986654
No 13
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=5e+02 Score=25.87 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=36.4
Q ss_pred hCChhHHHHHHHHHHHHH--------------HHHHHhHhcCCCCCcchHHHHH-----HHHHHhhhhhhHHhHHHHHH
Q 017719 179 TNPVLAKMVISGVVYSLG--------------DWIAQCFQGKPLFEFDRTRMFR-----SGLVGFTLHGSLSHYYYQFC 238 (367)
Q Consensus 179 r~PLlTKaiTSGvL~~lG--------------D~iAQ~ie~k~~~~~D~~Rt~r-----fal~G~~~~GPl~H~WY~~L 238 (367)
.++.+-.++.+|++.++| |++||.++++. .++..++.- ..+.++++.+++-+..|.++
T Consensus 110 ~~~~ll~aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~kk~--g~~iG~~ll~vd~~i~~~a~~~~~~~~~~lytli 186 (289)
T COG1284 110 IIDPLLAALFGGLLLGIGLGLVFRHGGSTGGTDILALILNKKF--GISVGKILLLVDGFILLIAALVFGPLPNALYTLL 186 (289)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHc--CCChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 477788899999998876 99999998774 344444321 12333333345555555433
No 14
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.21 E-value=89 Score=29.98 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhh
Q 017719 117 GNEEMERLIDRTINATIVLAVGTFAIT 143 (367)
Q Consensus 117 ~~~~~~~~~~~~~n~~iv~~~~~~~~~ 143 (367)
...++++..+++||.+|..++++.+|.
T Consensus 4 ~~r~KrRK~N~iLNiaI~IV~lLIiiv 30 (217)
T PF07423_consen 4 QQRQKRRKTNKILNIAIGIVSLLIIIV 30 (217)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 346788999999999998888776654
No 15
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=20.84 E-value=7.2e+02 Score=24.26 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCCh--hHHHHHHHHHHHH
Q 017719 118 NEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPV--LAKMVISGVVYSL 195 (367)
Q Consensus 118 ~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PL--lTKaiTSGvL~~l 195 (367)
..+..++.-.++-+++..+++++.++ +..++.+.++|. ..-.+..|++...
T Consensus 75 ~~~~~~~~~~iiiatip~~v~G~~~~---------------------------~~i~~~~~~~~~~v~~~Li~~g~lL~~ 127 (259)
T PF02673_consen 75 SNPDRRLLLLIIIATIPTGVVGLLFK---------------------------DFIEALFFSSPLVVAIALIITGLLLWL 127 (259)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHhhhchHHHHHHHHHHHHHHHH
Confidence 35556677777888888888877655 222233323554 4455678888888
Q ss_pred HHHHHHhHhcCCCCCcchHHHHHHHHHHhh
Q 017719 196 GDWIAQCFQGKPLFEFDRTRMFRSGLVGFT 225 (367)
Q Consensus 196 GD~iAQ~ie~k~~~~~D~~Rt~rfal~G~~ 225 (367)
+|..... .+++..+..++..+..+++=++
T Consensus 128 ~~~~~~~-~~~~~~~~~~~dal~iGl~Q~l 156 (259)
T PF02673_consen 128 ADRLKRK-GRKDEEDITFKDALIIGLAQGL 156 (259)
T ss_pred HHHHccC-CCCCcccCCHHHHHHHHHHHHc
Confidence 8888776 2233345666666655555444
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=20.76 E-value=9.5e+02 Score=24.86 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHhhhhh-hHHhHHHHHHhhhc---CCCCccchhhHHHHh--
Q 017719 184 AKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHG-SLSHYYYQFCEELF---PFQDWWVVPAKVAFD-- 257 (367)
Q Consensus 184 TKaiTSGvL~~lGD~iAQ~ie~k~~~~~D~~Rt~rfal~G~~~~G-Pl~H~WY~~Ldrlf---p~~s~~~vl~KVllD-- 257 (367)
.-++..|+..+++=++||.+-.++ .-+.+|+++.+++-.++.| ++.-..+-+.+.++ ..+.- ....+.+
T Consensus 65 ~~~~~~gl~~g~~~liaq~~Ga~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~---v~~~a~~Yl 139 (455)
T COG0534 65 IIAIFIGLGTGTTVLVAQAIGAGD--RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE---VLELAAEYL 139 (455)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh---HHHHHHHHH
Confidence 456778888899999999986442 3467788888887666566 55555554555443 22111 2222222
Q ss_pred -hhhhhhhHHHHHHHHHHHhcCC
Q 017719 258 -QTAWAAAWNSIYYMVLGLLRLE 279 (367)
Q Consensus 258 -QlV~sPi~~~~Ff~~~~lLeG~ 279 (367)
=..++-.....+++..+++++.
T Consensus 140 ~i~~~~~~~~~~~~~~~~~lr~~ 162 (455)
T COG0534 140 RIILLGAPFALLSFVLSGILRGL 162 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 1233444556666777777764
No 17
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.30 E-value=2.9e+02 Score=30.91 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=14.6
Q ss_pred HHHhhhhcccCCchhhhhhHHHHHHHHHH
Q 017719 306 AHLVTYGLVPVEQRLLWVDCVELIWVTIL 334 (367)
Q Consensus 306 aq~INF~fVP~~~Rvlfvn~V~l~WntyL 334 (367)
..+|.|.|||.++= |+-.-.++|.-|+
T Consensus 86 ~d~~~~~~~p~~~~--~~~~~~~v~~~~~ 112 (697)
T PF09726_consen 86 SDLICLFFIPVHWL--FFAASTYVWVQYV 112 (697)
T ss_pred HHHHHHHHHHHHHH--HHHHhHHHHHHHh
Confidence 35667777776543 3333344555444
No 18
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=20.14 E-value=1.5e+02 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=21.3
Q ss_pred HHHHHhHhcCCCCCcchHHHHHHHHHHhhh
Q 017719 197 DWIAQCFQGKPLFEFDRTRMFRSGLVGFTL 226 (367)
Q Consensus 197 D~iAQ~ie~k~~~~~D~~Rt~rfal~G~~~ 226 (367)
+.+.+.++..| .+|-.|.+..++.|+++
T Consensus 12 ~~m~~fie~hP--~WDQ~Rl~~aALa~FL~ 39 (57)
T PF10929_consen 12 QAMKDFIETHP--NWDQYRLFQAALAGFLL 39 (57)
T ss_pred HHHHHHHHcCC--CchHHHHHHHHHHHHHH
Confidence 45556666554 68999999999999886
Done!