Query 017719
Match_columns 367
No_of_seqs 173 out of 987
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 03:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrd_A LH-1, light-harvesting 18.0 1.5E+02 0.0052 21.4 4.0 31 210-240 7-43 (52)
2 4aw6_A CAAX prenyl protease 1 8.2 4.6E+02 0.016 26.5 5.7 51 220-270 131-187 (482)
3 1p58_D Envelope protein M; fla 6.1 3.4E+02 0.011 20.8 2.6 33 171-204 30-62 (75)
4 1rh5_B Preprotein translocase 5.6 5.8E+02 0.02 19.4 3.7 29 115-143 28-56 (74)
5 3mp7_B Preprotein translocase 5.5 6.3E+02 0.021 18.4 3.7 29 115-143 24-52 (61)
6 2kua_A BCL-2-like protein 10; 4.9 7.2E+02 0.025 21.4 4.4 62 157-226 42-105 (170)
7 3pev_B Nucleoporin GLE1; RECA, 4.7 6.4E+02 0.022 23.8 4.2 41 164-204 204-248 (297)
8 2itb_A TRNA-(MS(2)IO(6)A)-hydr 4.5 3.9E+02 0.013 24.3 2.4 20 118-137 106-125 (206)
9 2kii_A Putative uncharacterize 4.5 5.6E+02 0.019 21.8 3.4 71 228-298 3-79 (181)
10 3m92_A Protein YCIN; DUF2498, 4.4 1.4E+02 0.0049 24.3 -0.5 32 51-82 38-69 (107)
No 1
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=17.99 E-value=1.5e+02 Score=21.39 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=22.3
Q ss_pred CcchHHHHHHHHHHhhhhhhHHhHH------HHHHhh
Q 017719 210 EFDRTRMFRSGLVGFTLHGSLSHYY------YQFCEE 240 (367)
Q Consensus 210 ~~D~~Rt~rfal~G~~~~GPl~H~W------Y~~Ldr 240 (367)
-+|+||++.......+..+-+.|+- |++||.
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~~ 43 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccC
Confidence 4899998776666666667777775 677773
No 2
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=8.25 E-value=4.6e+02 Score=26.49 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=31.4
Q ss_pred HHHHhhhhhhHHhHHHHHHhhhcCCCC------ccchhhHHHHhhhhhhhhHHHHHH
Q 017719 220 GLVGFTLHGSLSHYYYQFCEELFPFQD------WWVVPAKVAFDQTAWAAAWNSIYY 270 (367)
Q Consensus 220 al~G~~~~GPl~H~WY~~Ldrlfp~~s------~~~vl~KVllDQlV~sPi~~~~Ff 270 (367)
.+++.++.=|+..|==-.+|..++.+. +...++..++.+++..|+...+++
T Consensus 131 ~l~~~l~~LP~~~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ 187 (482)
T 4aw6_A 131 TLFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLY 187 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555665432235788887642 345677788888888887655544
No 3
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=6.09 E-value=3.4e+02 Score=20.78 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=26.9
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHhHh
Q 017719 171 TAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQ 204 (367)
Q Consensus 171 ~~Y~~~L~r~PLlTKaiTSGvL~~lGD~iAQ~ie 204 (367)
.+=++..-|||..+-++. .+.+.+|+...|++-
T Consensus 30 ~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrvi 62 (75)
T 1p58_D 30 QRIETWILRHPGFTIMAA-ILAYTIGTTHFQRVL 62 (75)
T ss_pred HHHHHHHHHChHHHHHHH-HHHHHHcCChHHHHH
Confidence 344667789999999988 888999999888853
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=5.57 E-value=5.8e+02 Score=19.38 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=24.0
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhhh
Q 017719 115 RRGNEEMERLIDRTINATIVLAVGTFAIT 143 (367)
Q Consensus 115 ~~~~~~~~~~~~~~~n~~iv~~~~~~~~~ 143 (367)
.-+.+|..+...-..-..++.++++|+|+
T Consensus 28 KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 28 KPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888899999999888
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.47 E-value=6.3e+02 Score=18.40 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=24.0
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhhh
Q 017719 115 RRGNEEMERLIDRTINATIVLAVGTFAIT 143 (367)
Q Consensus 115 ~~~~~~~~~~~~~~~n~~iv~~~~~~~~~ 143 (367)
+.+.+|-.+..+...-..++.++++|+|+
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888899999999887
No 6
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=4.93 E-value=7.2e+02 Score=21.35 Aligned_cols=62 Identities=10% Similarity=-0.079 Sum_probs=34.1
Q ss_pred hHHHHHHhhhHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHhHhc--CCCCCcchHHHHHHHHHHhhh
Q 017719 157 TIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQG--KPLFEFDRTRMFRSGLVGFTL 226 (367)
Q Consensus 157 t~~eil~~~p~~lw~~Y~~~L~r~PLlTKaiTSGvL~~lGD~iAQ~ie~--k~~~~~D~~Rt~rfal~G~~~ 226 (367)
...+++|++...+-+.|.+.++.-. ..--..-+.+.|..+. +....++|.|++.++.||..+
T Consensus 42 ~~~~~Lr~v~~ele~~~~~~f~~~~--------~~~~~a~~~f~~Va~elF~ddg~iNWGRIVaLfaF~g~L 105 (170)
T 2kua_A 42 VEAALLRSVTRQIQQEHQEFFSSFC--------ESRGNRLELVKQMADKLLSKDQDFSWSQLVMLLAFAGTL 105 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------TTTSCHHHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--------CCcchHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence 4566777776666666655544433 1111112233333221 111368999999999999874
No 7
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=4.70 E-value=6.4e+02 Score=23.76 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHhhCChh-HHH---HHHHHHHHHHHHHHHhHh
Q 017719 164 YAPLHNWTAYEEALKTNPVL-AKM---VISGVVYSLGDWIAQCFQ 204 (367)
Q Consensus 164 ~~p~~lw~~Y~~~L~r~PLl-TKa---iTSGvL~~lGD~iAQ~ie 204 (367)
+.+.+.|+|..+.|...|.. |.+ +..+.+=.+|..+.|.+-
T Consensus 204 ~~~~~~W~wLArilN~~p~~~t~t~~~vL~~~Le~ag~~l~~~Yg 248 (297)
T 3pev_B 204 FPIALSWHILARICNTPLNLITNTHFVILGSWWDAAAVQFLQAYG 248 (297)
T ss_dssp SCTHHHHHHHHHHHTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHhCCCHHhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888999988874 444 555555566665555543
No 8
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=4.51 E-value=3.9e+02 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 017719 118 NEEMERLIDRTINATIVLAV 137 (367)
Q Consensus 118 ~~~~~~~~~~~~n~~iv~~~ 137 (367)
..|.++++|+|+.+.+|++=
T Consensus 106 ~~ep~~l~D~Llv~AlIEAR 125 (206)
T 2itb_A 106 AHEPVKLVDTLVVGAFIEAR 125 (206)
T ss_dssp SSTTHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 56679999999999999973
No 9
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=4.46 E-value=5.6e+02 Score=21.84 Aligned_cols=71 Identities=8% Similarity=-0.027 Sum_probs=45.9
Q ss_pred hhHHhHHHHHHhhhcCCCCccchhhHHHHhhhhhhhhH------HHHHHHHHHHhcCCChhHHHHHHHHhhHHHHhh
Q 017719 228 GSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAW------NSIYYMVLGLLRLESPFSIFSELKATFWPMLTA 298 (367)
Q Consensus 228 GPl~H~WY~~Ldrlfp~~s~~~vl~KVllDQlV~sPi~------~~~Ff~~~~lLeG~s~~ei~~klk~~y~ptL~a 298 (367)
|-+...|-.++...++...|..+..+.-++.-+|.|.. ..-.+...+-.-|.+.+++++.+-+.+...+..
T Consensus 3 G~I~~~~~~~v~~~~G~e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~~fG~~~~~~~~~ 79 (181)
T 2kii_A 3 GIIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFNGLAS 79 (181)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHcCHHHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 55667788888888877767777777666555555542 233444445556888888888777766555443
No 10
>3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A}
Probab=4.36 E-value=1.4e+02 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=27.3
Q ss_pred eeehhcccccccccccCCCcccccCCceeeec
Q 017719 51 VVNSVVNEELDVLPVQSQDLTDMQEGVVVGRE 82 (367)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (367)
..|.+++|--|.+.+--+++.+|.+||++-+-
T Consensus 38 ~AN~iI~eHeDyi~GM~A~~Veqk~~VLVFkG 69 (107)
T 3m92_A 38 EANKIIREHEDTLAGIEATGVTQRNGVLVFTG 69 (107)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSSCEEEEE
T ss_pred HHHHHHHHhHHHhccccccceeeeCCEEEEec
Confidence 35678889999999999999999999998543
Done!