Query 017719
Match_columns 367
No_of_seqs 173 out of 987
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 03:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 22.7 50 0.0036 22.2 4.0 31 210-240 7-43 (52)
2 d1l5aa1 c.43.1.2 (A:1-174) Vib 8.9 1.5E+02 0.011 22.4 4.1 32 145-180 121-152 (174)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.0 67 0.0049 18.4 0.7 16 298-313 6-21 (26)
4 d2vqca1 a.4.5.78 (A:4-73) F-11 5.8 60 0.0044 22.4 0.1 27 194-221 22-48 (70)
5 d2itba1 a.25.1.7 (A:3-201) Put 5.3 1.5E+02 0.011 24.7 2.4 20 118-137 103-122 (199)
6 d1e58a_ c.60.1.1 (A:) Phosphog 5.1 1.4E+02 0.01 24.4 2.1 38 144-181 85-122 (247)
7 d1q9ja1 c.43.1.2 (A:1-175) Pol 5.0 2.9E+02 0.021 20.4 4.0 32 144-179 118-149 (175)
8 d1h2sa_ f.13.1.1 (A:) Sensory 5.0 4.4E+02 0.032 21.2 5.4 61 288-348 159-222 (225)
9 d1h2vc1 a.118.1.14 (C:29-290) 4.9 4.2E+02 0.03 21.9 5.3 69 248-316 37-114 (262)
10 d1oxwa_ c.19.1.3 (A:) Patatin 4.2 1.4E+02 0.0099 25.3 1.3 28 143-170 5-32 (360)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=22.70 E-value=50 Score=22.20 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=22.4
Q ss_pred CcchHHHHHHHHHHhhhhhhHHhHH------HHHHhh
Q 017719 210 EFDRTRMFRSGLVGFTLHGSLSHYY------YQFCEE 240 (367)
Q Consensus 210 ~~D~~Rt~rfal~G~~~~GPl~H~W------Y~~Ldr 240 (367)
-+|+||++.......+.-+-+.|+- |++||.
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWleg 43 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCccccccC
Confidence 4899998877666666667777764 677763
No 2
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=8.91 E-value=1.5e+02 Score=22.41 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=25.3
Q ss_pred eeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhC
Q 017719 145 LLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTN 180 (367)
Q Consensus 145 ~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~ 180 (367)
+++++|-+..||++..+++ ++...|+..+...
T Consensus 121 ~~~~hHii~Dg~S~~~l~~----el~~~Y~~~~~g~ 152 (174)
T d1l5aa1 121 YTRAHHIVLDGYGMMLFEQ----RLSQHYQSLLSGQ 152 (174)
T ss_dssp EEEEETTTCCHHHHHHHHH----HHHHHHHHHHHTC
T ss_pred eeecccEEEcHhHHHHHHH----HHHHHHHHHhCCC
Confidence 4789999999999988874 5667887766544
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.96 E-value=67 Score=18.41 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=11.2
Q ss_pred hccchhhHHHHhhhhc
Q 017719 298 AGWKLWPFAHLVTYGL 313 (367)
Q Consensus 298 asw~vWPpaq~INF~f 313 (367)
+-|.||.++-.+.|++
T Consensus 6 aiw~fw~ffalli~yl 21 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYYL 21 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888877776653
No 4
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=5.81 E-value=60 Score=22.41 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=17.9
Q ss_pred HHHHHHHHhHhcCCCCCcchHHHHHHHH
Q 017719 194 SLGDWIAQCFQGKPLFEFDRTRMFRSGL 221 (367)
Q Consensus 194 ~lGD~iAQ~ie~k~~~~~D~~Rt~rfal 221 (367)
.+-|++||.--..+ ..++..|++++.+
T Consensus 22 ~ledilaqfeis~~-~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP-SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc-hHhHHHHHHHHHH
Confidence 46799999832221 3578888888764
No 5
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=5.25 E-value=1.5e+02 Score=24.66 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 017719 118 NEEMERLIDRTINATIVLAV 137 (367)
Q Consensus 118 ~~~~~~~~~~~~n~~iv~~~ 137 (367)
..+.++++|+||.+.+|++=
T Consensus 103 ~~~~~~llD~Llv~AlIEAR 122 (199)
T d2itba1 103 AHEPVKLVDTLVVGAFIEAR 122 (199)
T ss_dssp SSTTHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhhh
Confidence 35667899999999999973
No 6
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli [TaxId: 562]}
Probab=5.05 E-value=1.4e+02 Score=24.40 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=27.9
Q ss_pred eeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCC
Q 017719 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNP 181 (367)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~P 181 (367)
.+-.+|.|.|.|-+..||....+.....+........|
T Consensus 85 ~L~E~~~G~~eG~~~~ei~~~~~~e~~~~~~~~~~~~p 122 (247)
T d1e58a_ 85 KLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTP 122 (247)
T ss_dssp GGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCC
T ss_pred chhhccccccCCCcHHHHHHHhHHHHHHHHhccccCCC
Confidence 36789999999999999999888765555444333333
No 7
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.01 E-value=2.9e+02 Score=20.39 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=25.2
Q ss_pred eeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhh
Q 017719 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKT 179 (367)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r 179 (367)
=+++++|-+..||++.-++ .++...|.+.+..
T Consensus 118 l~l~~HH~i~Dg~S~~~ll----~el~~~Y~~~~~~ 149 (175)
T d1q9ja1 118 LTLYLHHCMADGHHGAVLV----DELFSRYTDAVTT 149 (175)
T ss_dssp EEEEEEGGGCCHHHHHHHH----HHHHHHHHHHHHS
T ss_pred EEEEccccccCHhHHHHHH----HHHHHHHHHHHhC
Confidence 3588999999999998776 5667788876654
No 8
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=4.99 E-value=4.4e+02 Score=21.25 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=35.5
Q ss_pred HHHhhHHHHhhccchhhHHHHhh---hhcccCCchhhhhhHHHHHHHHHHhhhcccchhhhhcc
Q 017719 288 LKATFWPMLTAGWKLWPFAHLVT---YGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAE 348 (367)
Q Consensus 288 lk~~y~ptL~asw~vWPpaq~IN---F~fVP~~~Rvlfvn~V~l~WntyLS~i~n~~~e~~~~e 348 (367)
+-+.........|.+.|.+-++. +..+-+..+..+.|..+++-.+....+--..+++.++|
T Consensus 159 ~~~~l~~~~~v~W~iYPi~y~l~~~g~~~~~~~~~~~~y~i~D~i~K~~FG~~i~~~a~~~s~~ 222 (225)
T d1h2sa_ 159 LYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAE 222 (225)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHSTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 33445556678999999887774 34555566666666666655544443333333333333
No 9
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.89 E-value=4.2e+02 Score=21.88 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=48.3
Q ss_pred cchhhHHHHhhhhhhhhHHHHHHHHHHHhcCCChh---HHHHHHHHhhHHHHhhc-cc-----hhhHHHHhhhhcccC
Q 017719 248 WVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPF---SIFSELKATFWPMLTAG-WK-----LWPFAHLVTYGLVPV 316 (367)
Q Consensus 248 ~~vl~KVllDQlV~sPi~~~~Ff~~~~lLeG~s~~---ei~~klk~~y~ptL~as-w~-----vWPpaq~INF~fVP~ 316 (367)
+..+.+.+++.....|....+|-+..++++-+.++ ++.+++...|-..+..+ |. +-=+++++|+..++.
T Consensus 37 ~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 37 KSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 56677888888888899998888888999877643 46667777776666543 22 224566777776654
No 10
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}
Probab=4.18 E-value=1.4e+02 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.8
Q ss_pred heeeeeccccccchhHHHHHHhhhHHHH
Q 017719 143 TKLLTIDQDYWHGWTIFEIVRYAPLHNW 170 (367)
Q Consensus 143 ~~~~~id~~~~~Gwt~~eil~~~p~~lw 170 (367)
..||.+|.|=.||+-...+|+++-..+.
T Consensus 5 v~iLsldGGG~rG~~~~~vL~~L~~~~~ 32 (360)
T d1oxwa_ 5 VTVLSIDGGGIRGIIPATILEFLEGQLQ 32 (360)
T ss_dssp EEEEEECCCGGGGHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999988766553
Done!