BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017720
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/272 (86%), Positives = 260/272 (95%)
Query: 91 VSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQA 150
VSVLISGPPIKDP ALLRYALPIDNKA+REVQKPLEDITDSLKIAGVKALD VERNVRQA
Sbjct: 23 VSVLISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQA 82
Query: 151 SRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYV 210
SRTL+QGKS+IV G AESKK+HG E+++KLEAGM ++ +IVEDR RDAVAPKQKE+L YV
Sbjct: 83 SRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYV 142
Query: 211 GGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVT 270
GG+EEDMVDGFPYEVPEEY++MPLLKGRA+VDMKVK+KDNPN+++CVFRIVLDGYNAPVT
Sbjct: 143 GGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVT 202
Query: 271 AGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKS 330
AGNFVDLV+RHFYDGMEIQR+DGFVVQTGDPEGPAEGFIDPSTEKTRT+PLEIMV GEK+
Sbjct: 203 AGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKT 262
Query: 331 PFYGATLEELGLYKAQTKLPFNAFGTMAMARD 362
PFYG+TLEELGLYKAQ +PFNAFGTMAMAR+
Sbjct: 263 PFYGSTLEELGLYKAQVVIPFNAFGTMAMARE 294
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 258 FRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEG 307
F + L Y++P T NF L + FYD R FV+Q GDP G +G
Sbjct: 50 FEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 260 IVLDGY--NAPVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEG 307
IVL+ Y +AP T NF +L +R +Y+G + R F++Q GDP G G
Sbjct: 23 IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 260 IVLDGY--NAPVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEG 307
IVL+ Y +AP T NF +L +R +Y+G + R F++Q GDP G G
Sbjct: 23 IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 260 IVLDGY--NAPVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEG 307
IVL+ Y +AP T NF +L +R +Y+G + R F++Q GDP G G
Sbjct: 23 IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEG 307
P T NF+ L ++Y+G R GF+VQTGDP G G
Sbjct: 21 TPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEG 307
P T NF+ L ++Y+G R GF+VQTGDP G G
Sbjct: 27 TPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 68
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 262 LDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTG---------DPEGPAEGFIDP 311
LD APV+ NFVD V FY+ R GF++Q G P P + D
Sbjct: 20 LDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADN 79
Query: 312 STEKTR-TIPLEIMVEGEK--SPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVS 364
TR TI + + + S F+ + L Q + FG + DV+
Sbjct: 80 GLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVA 135
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 262 LDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTG---------DPEGPAEGFIDP 311
LD APV+ NFVD V FY+ R GF++Q G P P + D
Sbjct: 20 LDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADN 79
Query: 312 STEKTR-TIPLEIMVEGEK--SPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVS 364
TR TI + + + S F+ + L Q + FG + DV+
Sbjct: 80 GLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVA 135
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 26/95 (27%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
AP NF+ L +YD R GF+VQ GDP G G
Sbjct: 45 APKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSG------------------ 86
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMA 360
GE YGA ++ + ++L FN G +AMA
Sbjct: 87 -GES--IYGAPFKD----EFHSRLRFNRRGLVAMA 114
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 252 NVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTG 299
+ + V ++ LD AP T NF++ V++ YDG R +GF++Q G
Sbjct: 9 HTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGG 57
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 268 PVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEG 307
P T NF + +Y+G R GF++QTGDP G G
Sbjct: 43 PKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 83
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQ 297
P T NF+ L ++H+YDG R+ FV+Q
Sbjct: 40 TPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQ 71
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 259 RIVLDGYNAPVTAGNFVDLVQRH---------------FYDGMEIQRA-DGFVVQTGD 300
+I L G +AP T NFV L Q FYDG R GF++Q GD
Sbjct: 36 KIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGD 93
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPE 302
AP TA NF V+ YDG R DGF++Q G E
Sbjct: 20 APETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFE 56
>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|B Chain B, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|C Chain C, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|D Chain D, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|E Chain E, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|F Chain F, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
Length = 353
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 95/243 (39%), Gaps = 28/243 (11%)
Query: 110 ALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESK 169
A P + + V L+++ + +I V P + A + + GKS+IVE
Sbjct: 43 AAPYEERGVY-FTTDLDELLNDKEIQVVTICTPAHTHYELAKKVILAGKSVIVEKPFCDT 101
Query: 170 KEHGMELLQ-KLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGV--EEDMVDGF----- 221
EH ELL E G+ + D D +A KQ ++G + E +D F
Sbjct: 102 VEHAKELLALGREKGVVVMPYQNRRFDGDFLAVKQVVEQGFLGDIIEIESHIDYFRPGSI 161
Query: 222 PYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAG--NFVDLVQ 279
+E P+E S L G T+D + + PN + D N V N+ D V
Sbjct: 162 THEAPKEEGSFYSL-GIHTMDRMISLFGRPNT------VTYDIRNNEVEGAVDNYFD-VG 213
Query: 280 RHFYDGMEIQRADGFVVQTGDP----EGPAEGFIDPSTEKTRT-IPLEIMVE----GEKS 330
H+ + ++I+ +V P G FI ++ + IM E GE S
Sbjct: 214 LHYGNQLKIKLKTNHIVAKDYPRFIVHGTNGSFIKYGEDQQENDLKAGIMPESAGFGEDS 273
Query: 331 PFY 333
P Y
Sbjct: 274 PMY 276
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 268 PVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPS 312
P+ NFV L +Y R F+VQ GDP G G D +
Sbjct: 43 PLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTT 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,533,647
Number of Sequences: 62578
Number of extensions: 435834
Number of successful extensions: 1131
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 34
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)