Query 017720
Match_columns 367
No_of_seqs 243 out of 1483
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01924 cyclophilin_TLP40_like 99.9 2.1E-26 4.5E-31 209.1 10.7 112 254-365 5-117 (176)
2 KOG0883 Cyclophilin type, U bo 99.9 5.1E-26 1.1E-30 225.4 5.4 204 107-363 145-370 (518)
3 COG0652 PpiB Peptidyl-prolyl c 99.9 3E-24 6.5E-29 192.5 9.3 89 241-366 2-94 (158)
4 cd01928 Cyclophilin_PPIL3_like 99.9 1.3E-21 2.7E-26 173.8 10.7 91 240-363 2-93 (153)
5 cd01925 cyclophilin_CeCYP16-li 99.9 2.1E-21 4.6E-26 175.2 10.8 97 233-364 2-99 (171)
6 cd01927 cyclophilin_WD40 cyclo 99.9 2.4E-21 5.2E-26 171.0 10.1 84 255-363 6-90 (148)
7 cd01923 cyclophilin_RING cyclo 99.8 3E-21 6.6E-26 172.2 9.9 90 241-363 2-92 (159)
8 cd01922 cyclophilin_SpCYP2_lik 99.8 3.8E-21 8.3E-26 169.5 9.9 84 255-363 6-90 (146)
9 KOG0881 Cyclophilin type pepti 99.8 9.4E-22 2E-26 170.6 5.8 92 239-363 10-102 (164)
10 KOG0885 Peptidyl-prolyl cis-tr 99.8 5.9E-21 1.3E-25 188.8 8.2 101 229-364 5-106 (439)
11 PRK10903 peptidyl-prolyl cis-t 99.8 1.9E-20 4.1E-25 172.1 11.0 95 236-366 26-121 (190)
12 cd01921 cyclophilin_RRM cyclop 99.8 2.5E-20 5.3E-25 167.3 9.7 92 255-364 6-98 (166)
13 KOG0546 HSP90 co-chaperone CPR 99.8 9.3E-21 2E-25 187.2 7.2 100 237-366 7-119 (372)
14 cd01920 cyclophilin_EcCYP_like 99.8 6.3E-20 1.4E-24 163.1 9.5 84 255-366 6-90 (155)
15 PRK10791 peptidyl-prolyl cis-t 99.8 1.6E-19 3.5E-24 162.3 10.3 54 241-302 2-56 (164)
16 KOG0880 Peptidyl-prolyl cis-tr 99.8 1.3E-19 2.7E-24 167.0 8.9 106 227-363 30-141 (217)
17 KOG0882 Cyclophilin-related pe 99.8 1.8E-19 3.8E-24 181.9 6.5 86 255-366 413-499 (558)
18 PLN03149 peptidyl-prolyl isome 99.8 3.5E-18 7.6E-23 156.6 11.5 107 228-363 8-124 (186)
19 cd01926 cyclophilin_ABH_like c 99.8 4.5E-18 9.8E-23 152.3 10.8 84 254-363 13-106 (164)
20 PTZ00060 cyclophilin; Provisio 99.8 5.6E-18 1.2E-22 154.7 11.2 97 238-363 15-122 (183)
21 KOG0884 Similar to cyclophilin 99.7 3.8E-18 8.3E-23 147.6 7.0 90 241-363 3-93 (161)
22 cd00317 cyclophilin cyclophili 99.7 2.3E-17 4.9E-22 143.2 10.0 84 255-364 6-90 (146)
23 KOG0879 U-snRNP-associated cyc 99.7 4.7E-18 1E-22 149.2 5.4 99 237-364 9-117 (177)
24 PTZ00221 cyclophilin; Provisio 99.7 1.2E-16 2.6E-21 152.8 11.1 94 238-363 52-158 (249)
25 PF00160 Pro_isomerase: Cyclop 99.7 8.1E-16 1.8E-20 134.5 11.1 59 240-305 1-60 (155)
26 KOG0111 Cyclophilin-type pepti 99.6 8.3E-17 1.8E-21 151.0 3.7 95 240-363 138-237 (298)
27 KOG0415 Predicted peptidyl pro 99.6 7.2E-16 1.6E-20 152.3 7.9 96 240-364 2-101 (479)
28 KOG0865 Cyclophilin type pepti 99.2 1.3E-11 2.9E-16 112.0 4.7 96 239-363 4-107 (167)
29 PF05757 PsbQ: Oxygen evolving 96.8 0.00065 1.4E-08 63.9 1.9 158 53-213 28-197 (202)
30 PLN02729 PSII-Q subunit 96.0 0.1 2.2E-06 49.6 11.4 157 51-213 47-215 (220)
31 TIGR03042 PS_II_psbQ_bact phot 95.9 0.033 7.3E-07 49.9 7.7 92 117-211 44-135 (142)
32 PLN02956 PSII-Q subunit 95.5 0.28 6E-06 45.8 12.3 91 119-212 90-180 (185)
33 PLN02999 photosystem II oxygen 95.4 0.35 7.6E-06 45.1 12.6 93 118-213 93-185 (190)
34 smart00502 BBC B-Box C-termina 59.2 36 0.00078 27.7 6.4 73 139-211 40-122 (127)
35 PF02538 Hydantoinase_B: Hydan 57.8 35 0.00077 36.4 7.6 125 130-265 143-273 (527)
36 KOG0882 Cyclophilin-related pe 54.4 5.4 0.00012 42.2 0.8 46 256-301 112-158 (558)
37 PF15368 BioT2: Spermatogenesi 48.2 43 0.00093 30.9 5.4 21 102-122 58-78 (170)
38 cd05511 Bromo_TFIID Bromodomai 47.0 43 0.00094 28.4 5.1 67 117-191 42-111 (112)
39 PF09177 Syntaxin-6_N: Syntaxi 37.6 79 0.0017 25.9 5.1 29 173-201 44-74 (97)
40 PRK11820 hypothetical protein; 36.1 1.1E+02 0.0023 30.5 6.7 84 128-213 107-193 (288)
41 PF14276 DUF4363: Domain of un 35.5 1.9E+02 0.0042 24.3 7.3 79 118-206 25-103 (121)
42 COG2900 SlyX Uncharacterized p 31.5 1.8E+02 0.004 23.5 6.0 56 169-229 16-72 (72)
43 PF08559 Cut8_C: Cut8 six-heli 30.9 93 0.002 27.9 4.8 76 146-222 2-80 (143)
44 PF12903 DUF3830: Protein of u 25.8 69 0.0015 29.1 3.0 24 255-278 7-30 (147)
45 PF02646 RmuC: RmuC family; I 25.2 4.5E+02 0.0096 26.1 8.9 78 175-271 48-130 (304)
46 PRK10807 paraquat-inducible pr 24.9 2.2E+02 0.0047 30.8 7.1 81 110-193 407-491 (547)
47 PF02153 PDH: Prephenate dehyd 24.4 1.2E+02 0.0025 29.1 4.5 52 150-202 204-255 (258)
48 KOG1086 Cytosolic sorting prot 23.9 3.5E+02 0.0076 29.2 8.1 83 118-211 201-285 (594)
49 PRK10920 putative uroporphyrin 23.8 73 0.0016 33.1 3.2 84 126-216 136-219 (390)
50 PF01865 PhoU_div: Protein of 23.7 2.5E+02 0.0054 25.7 6.4 64 111-193 73-136 (214)
51 PLN02666 5-oxoprolinase 22.9 2.5E+02 0.0053 33.8 7.5 81 129-212 884-973 (1275)
52 PF14591 AF0941-like: AF0941-l 22.7 1.3E+02 0.0028 26.9 4.0 66 115-192 15-82 (127)
53 TIGR00153 conserved hypothetic 21.1 4.5E+02 0.0098 24.3 7.7 24 110-133 75-98 (216)
54 PF10191 COG7: Golgi complex c 21.0 2.6E+02 0.0057 31.5 7.0 94 118-216 110-219 (766)
55 KOG3251 Golgi SNAP receptor co 20.6 2.6E+02 0.0057 27.0 6.0 76 115-192 9-86 (213)
No 1
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.93 E-value=2.1e-26 Score=209.08 Aligned_cols=112 Identities=67% Similarity=1.057 Sum_probs=103.0
Q ss_pred cceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccccccccCCCCCC
Q 017720 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (367)
Q Consensus 254 ~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~~~G~~~pi 332 (367)
+.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+++.|+.|+.++..+.+|+|++..+.+.|+
T Consensus 5 ~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~ 84 (176)
T cd01924 5 DNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPV 84 (176)
T ss_pred ccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCCCc
Confidence 38999999999999999999999999999999999999 99999999999888888899998889999999998889999
Q ss_pred CCcchhhhhcccccCCCCCCCCeEEEeecCCCC
Q 017720 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDVSM 365 (367)
Q Consensus 333 yg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~P 365 (367)
|+.++++.+...+.+.|+||++|+|||||++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~ 117 (176)
T cd01924 85 YGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFD 117 (176)
T ss_pred cCcccccccccccccccccCCCCeEEEccCCCC
Confidence 998876555556788999999999999998863
No 2
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.1e-26 Score=225.44 Aligned_cols=204 Identities=19% Similarity=0.307 Sum_probs=150.3
Q ss_pred hhhcCCCCCHhHHHHhhh--Hhh--------hhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHH
Q 017720 107 LRYALPIDNKAVREVQKP--LED--------ITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMEL 176 (367)
Q Consensus 107 LR~alP~~n~~ir~iQ~~--LE~--------i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l 176 (367)
|....||...||.+||++ ||. |...||+-..-.-.++.+.....++.+|.+..+.|..|..+.++.-+..
T Consensus 145 LltdepFtR~DiItiQdP~~lek~~~~~F~hvk~~lk~~~eeek~~~~dpa~~~~k~~n~e~ks~l~el~k~~~p~~~~a 224 (518)
T KOG0883|consen 145 LLTDEPFTRADIITIQDPNNLEKFNMSDFYHVKKNLKTADEEEKKAKKDPALGYIKAMNLETKSTLPELSKEYQPKKSIA 224 (518)
T ss_pred hhccCCcchhceeeecCcchhhccchhhHHHHhcccccCcHHHHHhhcCchhhhhhhcchhhhhhhHHHhhhhccchhhh
Confidence 557789999999999998 776 5666665322211112222225667777666666666666555432221
Q ss_pred HHHHHHhHHHHHHHHhhcCccchhHHH-----------HHHHHHhhchhhhcccCCCCCCCcccccCCCCCCceEEEEEe
Q 017720 177 LQKLEAGMDELQQIVEDRDRDAVAPKQ-----------KELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKV 245 (367)
Q Consensus 177 ~~~l~~~l~~l~~~~~~kd~~~~~~~~-----------~~~L~~v~~lE~~~v~~~p~~vP~~y~~~P~l~GratV~~~t 245 (367)
.. ..+..|++...+ ..++-.|+..|...+. .+-..+-+.+...+|.|.|
T Consensus 225 -~t------------~~~~aD~~naahyStG~vaasfTSTam~PvT~neaaiid-------~d~~ry~rvKkkgyvrl~T 284 (518)
T KOG0883|consen 225 -ST------------MKRSADKINAAHYSTGAVAASFTSTAMTPVTKNEAAIID-------EDDVRYTRVKKKGYVRLVT 284 (518)
T ss_pred -hh------------ccccchhhhhhhccccceeceeccceeeecccchhhhcc-------chhhhhccccccceEEEec
Confidence 00 012233333322 2256777777877764 3333566677788999999
Q ss_pred ccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCcccccccccc
Q 017720 246 KVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIM 324 (367)
Q Consensus 246 ~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~ 324 (367)
+ .|+|.|||+.+.+|.+|+||+.||++|||+|+.|||. .+||||||||+|+|.|
T Consensus 285 n--------~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~G----------------- 339 (518)
T KOG0883|consen 285 N--------HGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRG----------------- 339 (518)
T ss_pred c--------CCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCC-----------------
Confidence 8 7999999999999999999999999999999999999 9999999999999887
Q ss_pred ccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 325 VEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 325 ~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
++++||-+|+|+ ..+.|.|+.+|+|+|||++
T Consensus 340 ----GeSiWgKpFkDE----f~~~l~H~gRGvlSMANsG 370 (518)
T KOG0883|consen 340 ----GESIWGKPFKDE----FCSNLSHDGRGVLSMANSG 370 (518)
T ss_pred ----CccccCCccccc----cCCCCCcCCcceEeeccCC
Confidence 378999999986 6788999999999999987
No 3
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3e-24 Score=192.52 Aligned_cols=89 Identities=34% Similarity=0.466 Sum_probs=74.7
Q ss_pred EEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCC-CCCccCCCCCcccc
Q 017720 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGP-AEGFIDPSTEKTRT 318 (367)
Q Consensus 241 V~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~-g~G~~dp~tg~~~~ 318 (367)
+.++|+ +|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+. +.| |.++.
T Consensus 2 v~~~t~--------~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~g------g~~~~ 67 (158)
T COG0652 2 VILETN--------KGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTG------GPGPP 67 (158)
T ss_pred ceeecc--------CCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCC------CCCCC
Confidence 567777 8999999999999999999999999999999999999 9999999999876 555 44556
Q ss_pred ccccccccCCCCCCCCcchhhhhcccccCCCCC--CCCeEEEeecCCCCC
Q 017720 319 IPLEIMVEGEKSPFYGATLEELGLYKAQTKLPF--NAFGTMAMARDVSMG 366 (367)
Q Consensus 319 iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~--~~~GtLAMArs~~Pg 366 (367)
++.|+.. +.| |.+|+|||||+++|+
T Consensus 68 f~~E~~~-----------------------~~~~~~~~G~lsMA~~g~P~ 94 (158)
T COG0652 68 FKDENFA-----------------------LNGDRHKRGTLSMARAGDPN 94 (158)
T ss_pred Ccccccc-----------------------cccccCCcceEeEcccCCcC
Confidence 6665522 122 469999999999876
No 4
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.86 E-value=1.3e-21 Score=173.77 Aligned_cols=91 Identities=29% Similarity=0.507 Sum_probs=77.6
Q ss_pred EEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCcccc
Q 017720 240 TVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRT 318 (367)
Q Consensus 240 tV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~ 318 (367)
+|.|+|+ .|+|+|+||++.||+||+||++||+.|||||+.|||+ ++||+|||||.+++.|.
T Consensus 2 ~v~l~T~--------~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~---------- 63 (153)
T cd01928 2 SVTLHTN--------LGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGG---------- 63 (153)
T ss_pred EEEEEEc--------cccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCC----------
Confidence 4678888 7999999999999999999999999999999999999 99999999998765541
Q ss_pred ccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 319 IPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 319 iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
.++|+.+++++ ..+.++|+++|+|||||++
T Consensus 64 -----------~~~~~~~~~~e----~~~~~~~~~~G~v~ma~~~ 93 (153)
T cd01928 64 -----------ESIWGKKFEDE----FRETLKHDSRGVVSMANNG 93 (153)
T ss_pred -----------CccCCCccccc----cccCCCcCCCcEEEEeeCC
Confidence 24566666654 2356789999999999975
No 5
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.85 E-value=2.1e-21 Score=175.20 Aligned_cols=97 Identities=31% Similarity=0.532 Sum_probs=81.0
Q ss_pred CCCCCceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCC
Q 017720 233 PLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDP 311 (367)
Q Consensus 233 P~l~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp 311 (367)
|+.+| .|.|+|+ .|+|+|+||.+.||+||+||++||+.|||||+.|||+ ++||+||||+.+++.|
T Consensus 2 ~~~~~--~v~i~Ts--------~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g---- 67 (171)
T cd01925 2 PPTTG--KVILKTT--------AGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTG---- 67 (171)
T ss_pred CCccc--EEEEEEc--------cccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCcc----
Confidence 44455 4667888 7999999999999999999999999999999999999 9999999999876554
Q ss_pred CCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCCC
Q 017720 312 STEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVS 364 (367)
Q Consensus 312 ~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~ 364 (367)
+.++|+.+++++ ..+.+.||.+|+|||||++.
T Consensus 68 -----------------~~s~~g~~~~~E----~~~~~~~~~~G~l~ma~~g~ 99 (171)
T cd01925 68 -----------------GESIYGEPFKDE----FHSRLRFNRRGLVGMANAGD 99 (171)
T ss_pred -----------------CcccCCCccCcc----cccCcCCCCCcEEEECcCCC
Confidence 235677777654 24567899999999999773
No 6
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.85 E-value=2.4e-21 Score=171.01 Aligned_cols=84 Identities=29% Similarity=0.444 Sum_probs=72.5
Q ss_pred ceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccccccccCCCCCCC
Q 017720 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (367)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~~~G~~~piy 333 (367)
.|+|+|+||.+.||+||+||++||+.|||||+.|||+ ++||+||||+.+++.| +.++|
T Consensus 6 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g---------------------~~~~~ 64 (148)
T cd01927 6 KGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTG---------------------GESIW 64 (148)
T ss_pred cccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCC---------------------CCccc
Confidence 7999999999999999999999999999999999999 9999999999876554 23566
Q ss_pred CcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 334 GATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 334 g~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+.+++++ ..+.++|+.+|+|||||++
T Consensus 65 ~~~~~~e----~~~~~~h~~~G~l~ma~~~ 90 (148)
T cd01927 65 GKEFEDE----FSPSLKHDRPYTLSMANAG 90 (148)
T ss_pred CCccccc----cccccCcCCCeEEEEeeCC
Confidence 6666654 2457889999999999875
No 7
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.85 E-value=3e-21 Score=172.18 Aligned_cols=90 Identities=26% Similarity=0.537 Sum_probs=77.4
Q ss_pred EEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccc
Q 017720 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTI 319 (367)
Q Consensus 241 V~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~i 319 (367)
|.|+|+ .|+|+|+||++.||+||+||++||++|||||+.|||+ ++||+||||+.+++.|
T Consensus 2 v~~~T~--------~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~------------ 61 (159)
T cd01923 2 VRLHTN--------KGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRG------------ 61 (159)
T ss_pred EEEEEc--------cccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCC------------
Confidence 578888 7999999999999999999999999999999999999 9999999999876554
Q ss_pred cccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 320 PLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 320 PlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+.++|+..++++ ..+.++|+.+|+|||||++
T Consensus 62 ---------~~~~~g~~~~~E----~~~~~~h~~~G~v~ma~~~ 92 (159)
T cd01923 62 ---------GESIWGKPFKDE----FKPNLSHDGRGVLSMANSG 92 (159)
T ss_pred ---------CccccCCccCcc----cccCcCcCCCcEEEEeeCC
Confidence 235667666654 3456789999999999875
No 8
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.85 E-value=3.8e-21 Score=169.49 Aligned_cols=84 Identities=30% Similarity=0.530 Sum_probs=72.7
Q ss_pred ceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccccccccCCCCCCC
Q 017720 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (367)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~~~G~~~piy 333 (367)
.|+|+|+||.+.||+||+||++||++|||||+.|||+ ++||+||||+.+++.| +.++|
T Consensus 6 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~---------------------~~~~~ 64 (146)
T cd01922 6 MGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRG---------------------GASIY 64 (146)
T ss_pred cccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCC---------------------ccccc
Confidence 7999999999999999999999999999999999999 9999999999866544 13567
Q ss_pred CcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 334 GATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 334 g~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+.+|+++ ..+.++|+.+|+|||||++
T Consensus 65 ~~~~~~e----~~~~~~h~~~G~l~ma~~~ 90 (146)
T cd01922 65 GKKFEDE----IHPELKHTGAGILSMANAG 90 (146)
T ss_pred CCCcccc----cccCcCCCCCeEEEEeeCC
Confidence 7667654 3467889999999999876
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.4e-22 Score=170.63 Aligned_cols=92 Identities=28% Similarity=0.528 Sum_probs=85.5
Q ss_pred eEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccc
Q 017720 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR 317 (367)
Q Consensus 239 atV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~ 317 (367)
+.|+++|+ .|.|++|||-..||.||.||..|+++|||||..|||+ ++||||||||+|+|.|
T Consensus 10 ~~V~LeTs--------mG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRG---------- 71 (164)
T KOG0881|consen 10 PNVTLETS--------MGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRG---------- 71 (164)
T ss_pred CeEEEeec--------ccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCC----------
Confidence 47888998 8999999999999999999999999999999999999 9999999999998877
Q ss_pred cccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 318 ~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+.++||..|+|+ -.+.|.|.-.|.|+|||.+
T Consensus 72 -----------GaSIYG~kF~DE----i~~dLkhTGAGILsMANaG 102 (164)
T KOG0881|consen 72 -----------GASIYGDKFEDE----IHSDLKHTGAGILSMANAG 102 (164)
T ss_pred -----------ccccccchhhhh----hhhhhcccchhhhhhhccC
Confidence 368999999987 4678999999999999987
No 10
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.9e-21 Score=188.79 Aligned_cols=101 Identities=32% Similarity=0.536 Sum_probs=91.2
Q ss_pred cccCCCCCCceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCC
Q 017720 229 YQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEG 307 (367)
Q Consensus 229 y~~~P~l~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G 307 (367)
|..-|+.+|. |.+.|+ .|+|.|||....+|.+|.||++||..|||+|+.|||+ |||++|||||+|+|+|
T Consensus 5 ~~~EP~ttgk--vil~TT--------~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtG 74 (439)
T KOG0885|consen 5 YNLEPPTTGK--VILKTT--------KGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTG 74 (439)
T ss_pred cccCCCccce--EEEEec--------cCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCC
Confidence 5566777774 555677 7999999999999999999999999999999999999 9999999999999888
Q ss_pred ccCCCCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCCC
Q 017720 308 FIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVS 364 (367)
Q Consensus 308 ~~dp~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~ 364 (367)
+++|||.+|.|+ .+|.|.|+.+|.|+|||.++
T Consensus 75 ---------------------gesiyg~~fadE----~h~Rlrf~rrGlvgmana~~ 106 (439)
T KOG0885|consen 75 ---------------------GESIYGRPFADE----FHPRLRFNRRGLVGMANAGN 106 (439)
T ss_pred ---------------------ccccccccchhh----cCcceeeeccceeeecccCC
Confidence 378999999986 68999999999999999876
No 11
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.83 E-value=1.9e-20 Score=172.11 Aligned_cols=95 Identities=27% Similarity=0.371 Sum_probs=74.2
Q ss_pred CCceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCC
Q 017720 236 KGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTE 314 (367)
Q Consensus 236 ~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg 314 (367)
.++.+|.|+|+ .|+|+|+||++.||+||+||++||+.|||||+.|||+ ++||+||||+.+...+.
T Consensus 26 ~~~~~v~l~T~--------~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~~------ 91 (190)
T PRK10903 26 KGDPHVLLTTS--------AGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQK------ 91 (190)
T ss_pred CCCcEEEEEec--------cccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCCC------
Confidence 47778999998 7999999999999999999999999999999999999 99999999986532110
Q ss_pred ccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCCCCC
Q 017720 315 KTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVSMG 366 (367)
Q Consensus 315 ~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~Pg 366 (367)
.++.++.++ .....||.+|+|||||++.|+
T Consensus 92 -----------------~~~~~~~~e-----~~~~l~~~~G~lama~~~~~~ 121 (190)
T PRK10903 92 -----------------KPNPPIKNE-----ADNGLRNTRGTIAMARTADKD 121 (190)
T ss_pred -----------------CCCCcccCc-----ccccCcCCCcEEEeCCCCCCC
Confidence 011122221 112347899999999976554
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.82 E-value=2.5e-20 Score=167.27 Aligned_cols=92 Identities=23% Similarity=0.223 Sum_probs=70.3
Q ss_pred ceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccccccccCCCCCCC
Q 017720 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (367)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~~~G~~~piy 333 (367)
.|+|+|+||.+.||+||+||++||+.|||||+.|||| ++|||||||+.+++.|.. .++. ......
T Consensus 6 ~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~--------~~~~------~~~~~~ 71 (166)
T cd01921 6 LGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGE--------SIYS------QLYGRQ 71 (166)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCc--------cccc------cccccc
Confidence 7999999999999999999999999999999999999 999999999987765521 1110 000001
Q ss_pred CcchhhhhcccccCCCCCCCCeEEEeecCCC
Q 017720 334 GATLEELGLYKAQTKLPFNAFGTMAMARDVS 364 (367)
Q Consensus 334 g~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~ 364 (367)
+..++++ ..+.++|+++|+|||||++.
T Consensus 72 ~~~~~~e----~~~~~~h~~~G~l~ma~~~~ 98 (166)
T cd01921 72 ARFFEPE----ILPLLKHSKKGTVSMVNAGD 98 (166)
T ss_pred CcccCcc----cCCccccCCceEEEEeECCC
Confidence 1123322 24678899999999999874
No 13
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.3e-21 Score=187.15 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=86.8
Q ss_pred CceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhh--cc---------CCCCceeeee-CCceEecCCCC-C
Q 017720 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RH---------FYDGMEIQRA-DGFVVQTGDPE-G 303 (367)
Q Consensus 237 GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~--~G---------fYDG~~FhRV-~gFViQgGDp~-g 303 (367)
++..|.|+++++.. ..|+|+|+||.+.+|+||+||+.||. .| .|+|+.|||| .+|||||||.+ |
T Consensus 7 ~~pr~ffDISI~ge---~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~g 83 (372)
T KOG0546|consen 7 TNPRVFFDISIGGE---PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEG 83 (372)
T ss_pred CCceEEEEEEeCCc---ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccC
Confidence 46778888887543 48999999999999999999999994 44 4999999999 99999999986 6
Q ss_pred CCCCccCCCCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCCCCC
Q 017720 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVSMG 366 (367)
Q Consensus 304 ~g~G~~dp~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~Pg 366 (367)
+|+| +++|||.+|+|+ ++.|.|+.+++|+|||.+ ||
T Consensus 84 nGtG---------------------GeSIYG~~FdDE-----nF~lKHdrpflLSMAN~G-pN 119 (372)
T KOG0546|consen 84 NGTG---------------------GESIYGEKFDDE-----NFELKHDRPFLLSMANRG-PN 119 (372)
T ss_pred CCCC---------------------cccccccccccc-----cceeccCcchhhhhhcCC-CC
Confidence 7766 479999999985 557999999999999988 65
No 14
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.81 E-value=6.3e-20 Score=163.11 Aligned_cols=84 Identities=27% Similarity=0.283 Sum_probs=65.3
Q ss_pred ceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccccccccCCCCCCC
Q 017720 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (367)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~~~G~~~piy 333 (367)
.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||+||||+...+.+. .+
T Consensus 6 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~-----------------------~~ 62 (155)
T cd01920 6 LGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK-----------------------ET 62 (155)
T ss_pred ceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcc-----------------------cc
Confidence 7999999999999999999999999999999999999 99999999987543220 01
Q ss_pred CcchhhhhcccccCCCCCCCCeEEEeecCCCCC
Q 017720 334 GATLEELGLYKAQTKLPFNAFGTMAMARDVSMG 366 (367)
Q Consensus 334 g~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~Pg 366 (367)
+.+++++ .....||.+|+|||||++.|+
T Consensus 63 ~~~~~~e-----~~~~~~~~~G~v~ma~~~~~~ 90 (155)
T cd01920 63 LKPIKNE-----AGNGLSNTRGTIAMARTNAPD 90 (155)
T ss_pred CCcccCc-----ccccccCCceEEEECCCCCCC
Confidence 1122221 112246899999999987654
No 15
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.80 E-value=1.6e-19 Score=162.29 Aligned_cols=54 Identities=30% Similarity=0.449 Sum_probs=50.8
Q ss_pred EEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCC
Q 017720 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPE 302 (367)
Q Consensus 241 V~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~ 302 (367)
|.|+|+ .|+|+|+||++.||+||+||++||+.|||||+.|||| ++|||||||+.
T Consensus 2 v~~~T~--------~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~ 56 (164)
T PRK10791 2 VTFHTN--------HGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE 56 (164)
T ss_pred EEEEEc--------cccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcC
Confidence 457787 7999999999999999999999999999999999999 99999999864
No 16
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=166.98 Aligned_cols=106 Identities=25% Similarity=0.412 Sum_probs=88.9
Q ss_pred cccccCCCCCCceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhh---ccC-CCCceeeee-CCceEecCCC
Q 017720 227 EEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ---RHF-YDGMEIQRA-DGFVVQTGDP 301 (367)
Q Consensus 227 ~~y~~~P~l~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~---~Gf-YDG~~FhRV-~gFViQgGDp 301 (367)
..|..-|..+.++...|+... ...|+|+|.|||..+|+||+||+.||. +|| |.|+.|||| ++|||||||.
T Consensus 30 ~~~~~~p~vT~kV~fdi~~g~-----~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~ 104 (217)
T KOG0880|consen 30 KKYEPGPKVTHKVYFDIEIGG-----EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDF 104 (217)
T ss_pred cccCCCCcceeEEEEEEEECC-----EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCcc
Confidence 457778888876666655542 347999999999999999999999997 445 999999999 9999999998
Q ss_pred C-CCCCCccCCCCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 302 E-GPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 302 ~-g~g~G~~dp~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+ |+|+| +.++||.+|+|+ +..|.|+.+|.|||||.+
T Consensus 105 t~g~gtG---------------------g~SIyG~~F~DE-----Nf~LkH~rpG~lSMAn~G 141 (217)
T KOG0880|consen 105 TKGDGTG---------------------GKSIYGEKFPDE-----NFKLKHDRPGRLSMANAG 141 (217)
T ss_pred ccCCCCC---------------------CeEeecCCCCCc-----cceeecCCCceEeeeccC
Confidence 6 56666 257899999985 567999999999999965
No 17
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.8e-19 Score=181.92 Aligned_cols=86 Identities=28% Similarity=0.424 Sum_probs=81.6
Q ss_pred ceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccccccccCCCCCCC
Q 017720 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (367)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~~~G~~~piy 333 (367)
.|+|.|.||++.+|+||+||-..+++|||||..|||+ .|||||+|||.|+|+| ++++|
T Consensus 413 ~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtg---------------------gesiw 471 (558)
T KOG0882|consen 413 QGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTG---------------------GESIW 471 (558)
T ss_pred ccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCC---------------------Ccccc
Confidence 8999999999999999999999999999999999999 9999999999999988 37899
Q ss_pred CcchhhhhcccccCCCCCCCCeEEEeecCCCCC
Q 017720 334 GATLEELGLYKAQTKLPFNAFGTMAMARDVSMG 366 (367)
Q Consensus 334 g~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~Pg 366 (367)
|..|||+ ..|.|.|+++=+|+|||++ ||
T Consensus 472 g~dfede----fh~~lrhdrpft~smanag-~n 499 (558)
T KOG0882|consen 472 GKDFEDE----FHPNLRHDRPFTVSMANAG-PN 499 (558)
T ss_pred cccchhh----cCcccccCCCceEEecccC-CC
Confidence 9999997 6899999999999999998 54
No 18
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.76 E-value=3.5e-18 Score=156.59 Aligned_cols=107 Identities=24% Similarity=0.355 Sum_probs=81.4
Q ss_pred ccccCCCCCCceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhcc-----C---CCCceeeee-CCceEec
Q 017720 228 EYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRH-----F---YDGMEIQRA-DGFVVQT 298 (367)
Q Consensus 228 ~y~~~P~l~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~G-----f---YDG~~FhRV-~gFViQg 298 (367)
+|...|.-.++..|.|+++... ...|+|+|+||.+.||+||+||++||+.+ + |+++.|||| ++|||||
T Consensus 8 ~~~~~~~~~~~~~v~~di~~~~---~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqg 84 (186)
T PLN03149 8 EWHLRPPNPKNPVVFFDVTIGG---IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQG 84 (186)
T ss_pred EeeecCCCCCCCEEEEEEeeCC---cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEc
Confidence 4444554444556777776432 24799999999999999999999999754 4 999999999 9999999
Q ss_pred CCCC-CCCCCccCCCCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 299 GDPE-GPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 299 GDp~-g~g~G~~dp~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
||+. +++.| +.++|+..|+++ ...+.|+++|+|||||++
T Consensus 85 Gd~~~~~g~g---------------------~~~~~g~~f~~e-----~~~~~h~~~G~lsma~~g 124 (186)
T PLN03149 85 GDFLKGDGTG---------------------CVSIYGSKFEDE-----NFIAKHTGPGLLSMANSG 124 (186)
T ss_pred CCcccCCCCC---------------------cccccCCccCCc-----ccccccCCCCEEEEeeCC
Confidence 9974 55544 135677666654 235679999999999976
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.75 E-value=4.5e-18 Score=152.26 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=69.6
Q ss_pred cceeEEEEEcCCCCchhHHHHHHhhh--cc------CCCCceeeee-CCceEecCCCC-CCCCCccCCCCCccccccccc
Q 017720 254 DECVFRIVLDGYNAPVTAGNFVDLVQ--RH------FYDGMEIQRA-DGFVVQTGDPE-GPAEGFIDPSTEKTRTIPLEI 323 (367)
Q Consensus 254 ~~G~I~IeLdg~~AP~Ta~NFv~Lv~--~G------fYDG~~FhRV-~gFViQgGDp~-g~g~G~~dp~tg~~~~iPlEi 323 (367)
..|+|+|+||.+.||+||+||++||+ +| |||++.|||+ ++|+|||||+. +++.|
T Consensus 13 ~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~---------------- 76 (164)
T cd01926 13 PAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTG---------------- 76 (164)
T ss_pred eceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCC----------------
Confidence 37999999999999999999999997 46 8999999999 99999999975 44333
Q ss_pred cccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 324 MVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 324 ~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+.++|+..++++ ...+.|+++|+|||||.+
T Consensus 77 -----~~~~~g~~~~~e-----~~~~~h~~~G~lsma~~~ 106 (164)
T cd01926 77 -----GKSIYGEKFPDE-----NFKLKHTGPGLLSMANAG 106 (164)
T ss_pred -----CCcccCCccCCC-----CccccCCCccEEEeeECC
Confidence 135667666653 346788899999999976
No 20
>PTZ00060 cyclophilin; Provisional
Probab=99.75 E-value=5.6e-18 Score=154.72 Aligned_cols=97 Identities=25% Similarity=0.323 Sum_probs=74.8
Q ss_pred ceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhh---------ccCCCCceeeee-CCceEecCCCC-CCCC
Q 017720 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ---------RHFYDGMEIQRA-DGFVVQTGDPE-GPAE 306 (367)
Q Consensus 238 ratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~---------~GfYDG~~FhRV-~gFViQgGDp~-g~g~ 306 (367)
+..|.|++.... ...|+|+|+||.+.||+||+||++||+ .+||||+.|||+ ++|+|||||+. +++.
T Consensus 15 ~~~v~~di~i~~---~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~ 91 (183)
T PTZ00060 15 RPKVFFDISIDN---APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT 91 (183)
T ss_pred CCEEEEEEEECC---EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence 444555555322 237999999999999999999999996 579999999999 99999999986 3333
Q ss_pred CccCCCCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 307 GFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 307 G~~dp~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
| +.++|+..++++ ...+.|+.+|+|+|||.+
T Consensus 92 ~---------------------g~~~~g~~~~~e-----~~~~~h~~~G~lsma~~g 122 (183)
T PTZ00060 92 G---------------------GESIYGRKFTDE-----NFKLKHDQPGLLSMANAG 122 (183)
T ss_pred C---------------------CCcccccccCCc-----cccccCCCCCEEEeccCC
Confidence 3 235566666553 346788899999999875
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.8e-18 Score=147.56 Aligned_cols=90 Identities=29% Similarity=0.483 Sum_probs=81.3
Q ss_pred EEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccc
Q 017720 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTI 319 (367)
Q Consensus 241 V~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~i 319 (367)
|.+.|. .|+|.||||.+.+|+||+||+.||-..||||..|||- +|||+|+|||...|.|
T Consensus 3 vtlht~--------~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrg------------ 62 (161)
T KOG0884|consen 3 VTLHTD--------VGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRG------------ 62 (161)
T ss_pred EEEeec--------cCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCC------------
Confidence 566676 6999999999999999999999999999999999999 9999999999887766
Q ss_pred cccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 320 PLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 320 PlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+.++||.+|||+ ....|+|+.+|.|+|||++
T Consensus 63 ---------g~siwg~~fede----~~~~lkh~~rg~vsmanng 93 (161)
T KOG0884|consen 63 ---------GNSIWGKKFEDE----YSEYLKHNVRGVVSMANNG 93 (161)
T ss_pred ---------CccccCCcchHH----HHHHHhhccceeEEcccCC
Confidence 368999999986 4567999999999999986
No 22
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.72 E-value=2.3e-17 Score=143.25 Aligned_cols=84 Identities=32% Similarity=0.441 Sum_probs=66.7
Q ss_pred ceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccccccccCCCCCCC
Q 017720 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (367)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~~~G~~~piy 333 (367)
.|+|+|+|+.+.||+||+||++||+.+||||+.|||+ ++|++||||+...+.+. ..+
T Consensus 6 ~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~----------------------~~~ 63 (146)
T cd00317 6 KGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG----------------------SGP 63 (146)
T ss_pred cCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC----------------------CcC
Confidence 7999999999999999999999999999999999999 99999999987653320 112
Q ss_pred CcchhhhhcccccCCCCCCCCeEEEeecCCC
Q 017720 334 GATLEELGLYKAQTKLPFNAFGTMAMARDVS 364 (367)
Q Consensus 334 g~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~ 364 (367)
+..++++ ..+.+.|+++|+|+|+|+++
T Consensus 64 ~~~~~~E----~~~~~~~~~~G~v~~~~~~~ 90 (146)
T cd00317 64 GYKFPDE----NFPLKYHHRRGTLSMANAGP 90 (146)
T ss_pred CCccCCc----cccCcCcCCCcEEEEeeCCC
Confidence 2233322 23344589999999999764
No 23
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.7e-18 Score=149.17 Aligned_cols=99 Identities=24% Similarity=0.379 Sum_probs=85.3
Q ss_pred CceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccC--------CCCceeeee-CCceEecCCC-CCCCC
Q 017720 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHF--------YDGMEIQRA-DGFVVQTGDP-EGPAE 306 (367)
Q Consensus 237 GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~Gf--------YDG~~FhRV-~gFViQgGDp-~g~g~ 306 (367)
...+|.|+++.+.. ..|+|.|||+.+.+|.|++||++.|...| |++..|||| .+|||||||. .|+|+
T Consensus 9 ~nPvVF~dv~igg~---~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt 85 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGR---PIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_pred CCCeEEEEEeeCCE---EcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCc
Confidence 36789999986542 47999999999999999999999997655 999999999 9999999998 46666
Q ss_pred CccCCCCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCCC
Q 017720 307 GFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVS 364 (367)
Q Consensus 307 G~~dp~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~ 364 (367)
|- .++|+.+|+|+ +..|+|+.+|.|+|||++.
T Consensus 86 G~---------------------~sIy~~~F~DE-----NFtlkH~~PGlLSMANsG~ 117 (177)
T KOG0879|consen 86 GV---------------------ASIYGSTFPDE-----NFTLKHDGPGLLSMANSGK 117 (177)
T ss_pred eE---------------------EEEcCCCCCCc-----ceeeecCCCceeeccccCC
Confidence 62 57899999985 5679999999999999874
No 24
>PTZ00221 cyclophilin; Provisional
Probab=99.69 E-value=1.2e-16 Score=152.83 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=74.2
Q ss_pred ceEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhcc-----------CCCCceeeee-CC-ceEecCCCCCC
Q 017720 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRH-----------FYDGMEIQRA-DG-FVVQTGDPEGP 304 (367)
Q Consensus 238 ratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~G-----------fYDG~~FhRV-~g-FViQgGDp~g~ 304 (367)
...|.|+|+.++. ..|+|+|+||.+.||+||+||+.||+.. +|+|+.|||| ++ |+||+||+.+.
T Consensus 52 ~~rVfldisig~~---~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~ 128 (249)
T PTZ00221 52 SCRAFLDISIGDV---LAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF 128 (249)
T ss_pred CCEEEEEEeeCCe---ecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC
Confidence 4457777775432 4799999999999999999999999732 3999999999 75 89999998642
Q ss_pred CCCccCCCCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 305 AEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 305 g~G~~dp~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+ ..+||.+|+|+. ..++|+.+|+|||||++
T Consensus 129 g------------------------~s~~G~~f~dE~-----~~~~h~~~G~LsMan~G 158 (249)
T PTZ00221 129 N------------------------VSSTGTPIADEG-----YRHRHTERGLLTMISEG 158 (249)
T ss_pred C------------------------ccCCCCcccCcc-----ccccCCCCCEEEeCcCC
Confidence 1 234666777653 35789999999999976
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.65 E-value=8.1e-16 Score=134.55 Aligned_cols=59 Identities=39% Similarity=0.579 Sum_probs=53.6
Q ss_pred EEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCC
Q 017720 240 TVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPA 305 (367)
Q Consensus 240 tV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g 305 (367)
+|+|+|+. .|+|+|+||++.||+||+||++||+.|+|+|+.|||+ +++++|+||+.+.+
T Consensus 1 ~~~i~t~~-------~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~ 60 (155)
T PF00160_consen 1 FVDIETSG-------LGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNG 60 (155)
T ss_dssp EEEEEETT-------EEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSS
T ss_pred CEEEEeCC-------ccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCC
Confidence 46778841 6999999999999999999999999999999999999 99999999987654
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.3e-17 Score=150.98 Aligned_cols=95 Identities=27% Similarity=0.428 Sum_probs=80.1
Q ss_pred EEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhh--hccC-CCCceeeee-CCceEecCCCC-CCCCCccCCCCC
Q 017720 240 TVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLV--QRHF-YDGMEIQRA-DGFVVQTGDPE-GPAEGFIDPSTE 314 (367)
Q Consensus 240 tV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv--~~Gf-YDG~~FhRV-~gFViQgGDp~-g~g~G~~dp~tg 314 (367)
.|.+.+.++.. ..|+|++.|+.+..|.|++||+.|| ++|| |+|++|||+ |.||+||||.+ ++|+|
T Consensus 138 qv~~~ikig~~---~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtg------- 207 (298)
T KOG0111|consen 138 QVYHDIKIGED---RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTG------- 207 (298)
T ss_pred Hhhhheeeccc---ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCC-------
Confidence 44444443332 3799999999999999999999999 5788 999999999 99999999996 56666
Q ss_pred ccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 315 KTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 315 ~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+.++||..|.|+ ++.|.|+-+|+|+|||++
T Consensus 208 --------------gksiygkkfdde-----nf~lkht~pgtlsmansg 237 (298)
T KOG0111|consen 208 --------------GKSIYGKKFDDE-----NFTLKHTMPGTLSMANSG 237 (298)
T ss_pred --------------Cccccccccccc-----ceeeecCCCceeeccccC
Confidence 358999999985 567999999999999987
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.2e-16 Score=152.31 Aligned_cols=96 Identities=26% Similarity=0.355 Sum_probs=80.0
Q ss_pred EEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCcccc
Q 017720 240 TVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRT 318 (367)
Q Consensus 240 tV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~ 318 (367)
.|.|+|+ .|+|+|.||-...|.||.||++||+..||+.+.||-| .+|++|+|||+|+|.|+
T Consensus 2 sVlieTt--------lGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG---------- 63 (479)
T KOG0415|consen 2 SVLIETT--------LGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGG---------- 63 (479)
T ss_pred cEEEEee--------cccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCc----------
Confidence 3667787 7999999999999999999999999999999999999 99999999999988772
Q ss_pred ccccccccCCCCCCCCcchhhhhc-c--cccCCCCCCCCeEEEeecCCC
Q 017720 319 IPLEIMVEGEKSPFYGATLEELGL-Y--KAQTKLPFNAFGTMAMARDVS 364 (367)
Q Consensus 319 iPlEi~~~G~~~piyg~~~ed~G~-~--~~~p~Lp~~~~GtLAMArs~~ 364 (367)
+++|+....+++. + ...|.+.|+..|+|+|++++.
T Consensus 64 -----------~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~ 101 (479)
T KOG0415|consen 64 -----------ESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGE 101 (479)
T ss_pred -----------ceeeeecccccchhhhhhhcccccccccceEEeecCCc
Confidence 4555543322222 2 357899999999999998764
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.3e-11 Score=112.01 Aligned_cols=96 Identities=26% Similarity=0.352 Sum_probs=76.9
Q ss_pred eEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhh--ccC-CCCceeee-e---CCceEecCCCC-CCCCCccC
Q 017720 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQR-A---DGFVVQTGDPE-GPAEGFID 310 (367)
Q Consensus 239 atV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~--~Gf-YDG~~FhR-V---~gFViQgGDp~-g~g~G~~d 310 (367)
.+|.++++... ...|++.++|+.+..|+|++||..|+. +|| |.+..||| + ++||+||||.+ ++++|
T Consensus 4 ~~vf~d~~~~~---~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtg--- 77 (167)
T KOG0865|consen 4 PTVFFDIAIDG---EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTG--- 77 (167)
T ss_pred CeeeeeeeecC---ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCcc---
Confidence 35666665432 347899999999999999999999984 566 99999999 3 58999999985 44444
Q ss_pred CCCCccccccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720 311 PSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV 363 (367)
Q Consensus 311 p~tg~~~~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~ 363 (367)
+.++|++.|+|+. ..++|..+|.|+|||.+
T Consensus 78 ------------------gkSiy~ekF~Den-----FilkhtgpGiLSmaNag 107 (167)
T KOG0865|consen 78 ------------------GKSIYGEKFDDEN-----FILKHTGPGILSMANAG 107 (167)
T ss_pred ------------------ceEecccccCCcC-----cEEecCCCCeeehhhcC
Confidence 3577999998864 56889899999999987
No 29
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=96.76 E-value=0.00065 Score=63.89 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=77.0
Q ss_pred chhhHHHHHHHHHHHHhhcccCCcccchhhh--hcCCCCCcccccCCCCCCCHHHH---hhhcC-----CCCC--HhHHH
Q 017720 53 QKLKECAISIALAAGLITGVPAIADANINAN--INMAMPDVSVLISGPPIKDPGAL---LRYAL-----PIDN--KAVRE 120 (367)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~l~~g~~i~d~~a~---LR~al-----P~~n--~~ir~ 120 (367)
..-++.++|..+|++++.+..+.+-...+.+ ..+++|....+|.-+.+.-.+.+ |+.-+ +... .-|++
T Consensus 28 ~~~RRa~l~~l~a~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~g~~~~~~aRd~~l~lk~rf~~~~l~~~ea~~Rik~ 107 (202)
T PF05757_consen 28 QTSRRAVLGSLLAAALAGGSFAQAAAAAAWAIKVGLPPPPSGNLPGTNNSDGARDFDLPLKERFYIQPLSPEEAAARIKE 107 (202)
T ss_dssp -----------------------------S-EE---------------------------TT--EE----CCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhcccccccchhhhccCCCCCCCCCCCCccccccccccccchhhceecCCCCHHHHHHHHHH
Confidence 3445566664555555554333321111111 22444455565544555555665 54432 1111 12444
Q ss_pred HhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccchh
Q 017720 121 VQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVA 200 (367)
Q Consensus 121 iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~~~ 200 (367)
-.+.|.++.+.+-. |.|.-+..+++.-..-|..+=+.|+.+.|+++|+....+.++|=+.+++|..++..||..++.
T Consensus 108 sa~~L~~lk~lIdk---~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~LD~Aar~K~~~~a~ 184 (202)
T PF05757_consen 108 SAKRLLSLKELIDK---KSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNIEELDYAARSKDVPEAE 184 (202)
T ss_dssp HHHHHCCCHHHHHT---T-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhh---ccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44456667777765 899999999987777888888999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhch
Q 017720 201 PKQKELLNYVGGV 213 (367)
Q Consensus 201 ~~~~~~L~~v~~l 213 (367)
...++++..+.++
T Consensus 185 ~~Y~~t~~~Ldev 197 (202)
T PF05757_consen 185 KYYADTVKALDEV 197 (202)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887776665543
No 30
>PLN02729 PSII-Q subunit
Probab=95.97 E-value=0.1 Score=49.61 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=108.1
Q ss_pred CcchhhHHHHHHHHHHHHhhcccCCcccchhhh----hcCCCCCcccccC-CCCCCCHHHHhhhcCCC---CC-HhHHHH
Q 017720 51 PFQKLKECAISIALAAGLITGVPAIADANINAN----INMAMPDVSVLIS-GPPIKDPGALLRYALPI---DN-KAVREV 121 (367)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~l~~-g~~i~d~~a~LR~alP~---~n-~~ir~i 121 (367)
....-+..++|++ |++|+.++.+-+ ..+.+ ..+++|..+.+.+ .|.-.-.+..|+.-.=+ .- ..+-+|
T Consensus 47 ~~~~~rr~~lgl~-a~~l~~~s~~~~--~~A~~~~i~~~~P~P~pst~n~~~~e~~gtRsfLKerfy~~~l~p~~aa~Ri 123 (220)
T PLN02729 47 SFQTTRRLALGLA-SIALIGNSGNGV--SLAEDNGFWLDGPLPVPSVDNKIVNEKTGTRSFLKKGIYMADIGTKGRMYRV 123 (220)
T ss_pred hhhhhHHHHHHHH-HHHHhcchhhhH--HHhcccCceeCCCCCCCccccccccccchHHHHHHhcccCCCCCHHHHHHHH
Confidence 4455567778876 778877754332 22222 2233233344433 23334456778765422 11 234444
Q ss_pred hhhHh---hhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccc
Q 017720 122 QKPLE---DITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDA 198 (367)
Q Consensus 122 Q~~LE---~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~ 198 (367)
...-+ .+.+.+- .|.|.-+-.+++....-|..+=+.|+.+.|.++|+.-..|.++|-+.+++|..++..|+..+
T Consensus 124 K~sA~dLl~vKdLId---~~sW~yVq~~LRLKAsyL~yDL~tvIsskP~~eKk~L~~LankLFdn~~eLD~AaR~Ks~~e 200 (220)
T PLN02729 124 KKYAFDLLALEDLIG---PDTLNYVRKYLRLKSTFMYYDFDKLISAAPVDDKQPLTDLANRLFDNFEKLEDASKRKNLSE 200 (220)
T ss_pred HHHHHHHHHHHHhhC---cchHHHHHHHHHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHHHhhHHHHHHHHhCCChHH
Confidence 44433 3555553 38999999999998999999999999999999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHhhch
Q 017720 199 VAPKQKELLNYVGGV 213 (367)
Q Consensus 199 ~~~~~~~~L~~v~~l 213 (367)
+...-.+++..+.++
T Consensus 201 ae~yY~~Tv~aLdeV 215 (220)
T PLN02729 201 TESSYKDTKTLLQEV 215 (220)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877777766666544
No 31
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=95.92 E-value=0.033 Score=49.88 Aligned_cols=92 Identities=7% Similarity=0.147 Sum_probs=80.0
Q ss_pred hHHHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCc
Q 017720 117 AVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDR 196 (367)
Q Consensus 117 ~ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~ 196 (367)
+|.+.+++|.++...+-. |.|..+...++.-+.-|..+=..|..++|++.|+.+.++..+|.+.|.+|-.+...||.
T Consensus 44 ~i~~~~~r~~eLk~lI~k---k~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~kd~ 120 (142)
T TIGR03042 44 GIEAAKDRLPELASLVAK---EDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQDG 120 (142)
T ss_pred HHHHHHHhhHHHHHHHhh---cchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 466677777778888776 99999999999988899999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHHhh
Q 017720 197 DAVAPKQKELLNYVG 211 (367)
Q Consensus 197 ~~~~~~~~~~L~~v~ 211 (367)
.......+++...+.
T Consensus 121 ~~a~k~Y~~av~~~d 135 (142)
T TIGR03042 121 PQAQKAYQKAAADFD 135 (142)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877777655544
No 32
>PLN02956 PSII-Q subunit
Probab=95.53 E-value=0.28 Score=45.82 Aligned_cols=91 Identities=14% Similarity=0.209 Sum_probs=73.9
Q ss_pred HHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccc
Q 017720 119 REVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDA 198 (367)
Q Consensus 119 r~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~ 198 (367)
|+=-+.|=.+...+-. |.|--+...++.-+.-|.++=..|..++|++.|+.+.+|..+|-+.|++|..++..||..+
T Consensus 90 k~~A~~l~~LK~LI~k---~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~~LD~AAR~kd~~~ 166 (185)
T PLN02956 90 RGHAENLLRVKALIES---ESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTKLDYAARDKDETR 166 (185)
T ss_pred HHHHHHHHHHHHHhhh---ccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3333334445555544 8899999999888888988999999999999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHhhc
Q 017720 199 VAPKQKELLNYVGG 212 (367)
Q Consensus 199 ~~~~~~~~L~~v~~ 212 (367)
....-++++..+.+
T Consensus 167 a~k~Y~~tva~lD~ 180 (185)
T PLN02956 167 VWEYYENIVASLDD 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777776655553
No 33
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=95.43 E-value=0.35 Score=45.07 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=78.9
Q ss_pred HHHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCcc
Q 017720 118 VREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRD 197 (367)
Q Consensus 118 ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~ 197 (367)
||+=-+.|=.+.+.|-. |.|.-+-.++|..+.-|..+=..|+.+.|+++|..-.+|.++|-+.+++|.-++..||..
T Consensus 93 iK~sA~dLl~vK~LId~---~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~~L~~LankLFdnvt~LDyAAR~K~~~ 169 (190)
T PLN02999 93 IKQTAEGLRDMREMLDH---MSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDYYVRTPKVY 169 (190)
T ss_pred HHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhHHHHHHHHHHhhhHHHHHHHHhcCChH
Confidence 34444445556777765 999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhHHHHHHHHHhhch
Q 017720 198 AVAPKQKELLNYVGGV 213 (367)
Q Consensus 198 ~~~~~~~~~L~~v~~l 213 (367)
++..--+..+..+.++
T Consensus 170 eae~yY~~Tv~slddV 185 (190)
T PLN02999 170 ESYLYYEKTLKSIDNV 185 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777777666654
No 34
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=59.22 E-value=36 Score=27.72 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=45.8
Q ss_pred cChhhhhhHHHHHHHHhcccchhhcccccchhHHHH---HHHHHH-------HHhHHHHHHHHhhcCccchhHHHHHHHH
Q 017720 139 ALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGM---ELLQKL-------EAGMDELQQIVEDRDRDAVAPKQKELLN 208 (367)
Q Consensus 139 ~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~---~l~~~l-------~~~l~~l~~~~~~kd~~~~~~~~~~~L~ 208 (367)
.+..|..-...-...|..+++.+|..|-...+..-. +.+..+ ...++..+..++..|.-.|......+..
T Consensus 40 ~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~ 119 (127)
T smart00502 40 VEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIE 119 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 345566667777888999999999999877654443 223333 4444444444555566667766666655
Q ss_pred Hhh
Q 017720 209 YVG 211 (367)
Q Consensus 209 ~v~ 211 (367)
.+.
T Consensus 120 rl~ 122 (127)
T smart00502 120 RLQ 122 (127)
T ss_pred HHH
Confidence 554
No 35
>PF02538 Hydantoinase_B: Hydantoinase B/oxoprolinase; InterPro: IPR003692 An appreciable fraction of the sulphur present in mammals occurs in the form of glutathione. The synthesis of glutathione and its utilization take place by the reactions of the gamma-glutamyl cycle, which include those catalysed by gamma-glutamylcysteine and glutathione synthetases, gamma-glutamyl transpeptidase, cysteinylglycinase, gamma-glutamyl cyclotransferease, and 5-oxoprolinase []. This family includes N-methylhydantoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase 3.5.2.9 from EC which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to hydantoinase_A.; GO: 0003824 catalytic activity
Probab=57.75 E-value=35 Score=36.44 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=74.7
Q ss_pred hhhhccccccChh--hhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccchhHHHHHHH
Q 017720 130 DSLKIAGVKALDP--VERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELL 207 (367)
Q Consensus 130 ~~Lr~~~~k~w~~--~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~~~~~~~~~L 207 (367)
+-||+|-.|-+.. +..||-+ +++.++. --..+|......-.+++..++.+.+.|.++++.-..|.+....++.+
T Consensus 143 EGl~iPpvKl~~~G~~~~dv~~--~~i~~n~--~~sR~P~~~~gDl~A~iaa~~~g~~rl~el~~~yG~d~v~~~~~~~~ 218 (527)
T PF02538_consen 143 EGLRIPPVKLYERGVLNEDVLD--RIILRNV--FNSRVPDQVLGDLRAQIAACRIGARRLLELIERYGADTVRAAMDEIL 218 (527)
T ss_pred CCCeeeeEEEEECCEeCHHHHH--HHHHhCC--CCCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777664433 4555543 1332221 11457888888888999999999999999999988888888777777
Q ss_pred HHhhchhhhcccCCCC--CCCcccccCCC--CCCceEEEEEeccCCCCCccceeEEEEEcCC
Q 017720 208 NYVGGVEEDMVDGFPY--EVPEEYQSMPL--LKGRATVDMKVKVKDNPNVDECVFRIVLDGY 265 (367)
Q Consensus 208 ~~v~~lE~~~v~~~p~--~vP~~y~~~P~--l~GratV~~~t~~~d~~~~~~G~I~IeLdg~ 265 (367)
+...+.=...+..+|= .. -+|..... -.....+.++++++ .++|++.+.+.
T Consensus 219 ~~sE~~~r~~I~~lpd~~g~-~~~~~~~~~~~~~~i~i~v~vtv~------gd~l~~DfsGt 273 (527)
T PF02538_consen 219 DYSERRMRAAIAELPDGYGT-YEFEDYDDGDDGEPIKIKVTVTVK------GDELTVDFSGT 273 (527)
T ss_pred HHHHHHHHHHHHhcCccCCc-eEeeeecCCCCCcEEEEEEEEEEC------CCEEEEEcCCC
Confidence 6655443333333331 11 01111111 11234445555432 57899998874
No 36
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.40 E-value=5.4 Score=42.24 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=43.5
Q ss_pred eeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCC
Q 017720 256 CVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDP 301 (367)
Q Consensus 256 G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp 301 (367)
..|.|+++..-.|.-+..|.++|+.+++++..|.|| .-+++|.||.
T Consensus 112 s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 112 SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 389999999999999999999999999999999999 8999999986
No 37
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=48.16 E-value=43 Score=30.91 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=15.5
Q ss_pred CHHHHhhhcCCCCCHhHHHHh
Q 017720 102 DPGALLRYALPIDNKAVREVQ 122 (367)
Q Consensus 102 d~~a~LR~alP~~n~~ir~iQ 122 (367)
.++.++||||||-....+++=
T Consensus 58 TgESivryALPIPssktkell 78 (170)
T PF15368_consen 58 TGESIVRYALPIPSSKTKELL 78 (170)
T ss_pred CchhHHHhhcCCCchhhhhhh
Confidence 679999999999554444443
No 38
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=47.02 E-value=43 Score=28.39 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=47.2
Q ss_pred hHHHHhhhHhhhhhhhhccccccChhhhhhHHHH---HHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHH
Q 017720 117 AVREVQKPLEDITDSLKIAGVKALDPVERNVRQA---SRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIV 191 (367)
Q Consensus 117 ~ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a---~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~ 191 (367)
++.+|++.|+.= .-+.|.....|++.- ....| ..+..+...+.+.+..++..++++.+.|.+|+..+
T Consensus 42 dL~tI~~kl~~~-------~Y~s~~ef~~Dv~li~~Na~~yN-~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (112)
T cd05511 42 DLQTIRKKISKH-------KYQSREEFLEDIELIVDNSVLYN-GPDSVYTKKAKEMLELAEELLAEREEKLTQLEKNI 111 (112)
T ss_pred CHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 466666666652 236677777786533 23444 55666777888889999999999999999988754
No 39
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=37.62 E-value=79 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHHHHHHHh--hcCccchhH
Q 017720 173 GMELLQKLEAGMDELQQIVE--DRDRDAVAP 201 (367)
Q Consensus 173 ~~~l~~~l~~~l~~l~~~~~--~kd~~~~~~ 201 (367)
=...|.+|+..|++|++.|. .+++.+|..
T Consensus 44 L~~~l~~ie~~L~DL~~aV~ive~np~kF~l 74 (97)
T PF09177_consen 44 LRNALQSIEWDLEDLEEAVRIVEKNPSKFNL 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 34667888999999998776 477777643
No 40
>PRK11820 hypothetical protein; Provisional
Probab=36.10 E-value=1.1e+02 Score=30.54 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=51.8
Q ss_pred hhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHh---hcCccchhHHHH
Q 017720 128 ITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVE---DRDRDAVAPKQK 204 (367)
Q Consensus 128 i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~---~kd~~~~~~~~~ 204 (367)
+...|+.||. +..-..+.......+..-=+.-|+.+-..++..|+.|...|..-|+.|+..++ ..-+..+...+.
T Consensus 107 l~~ll~~p~v--~~~~~~~~~~~~~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~ 184 (288)
T PRK11820 107 LDDLLRWPGV--LEAEEEDLEALWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRE 184 (288)
T ss_pred HHHHhCCCCc--ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4456676665 22112233222334444445566777788999999999999999998887655 344444555556
Q ss_pred HHHHHhhch
Q 017720 205 ELLNYVGGV 213 (367)
Q Consensus 205 ~~L~~v~~l 213 (367)
++...+.++
T Consensus 185 rL~~rl~el 193 (288)
T PRK11820 185 RLRERLEEL 193 (288)
T ss_pred HHHHHHHHH
Confidence 666666654
No 41
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=35.49 E-value=1.9e+02 Score=24.30 Aligned_cols=79 Identities=14% Similarity=0.286 Sum_probs=55.4
Q ss_pred HHHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCcc
Q 017720 118 VREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRD 197 (367)
Q Consensus 118 ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~ 197 (367)
-..+++.|+.+-..+.. +.|+.-.+...+....-+..+ ..+.-+-.- .-++.+...|.+|...++.+|++
T Consensus 25 ~~~i~~~l~~i~~~i~~---~dW~~A~~~~~~l~~~W~k~~-~~~~~~~~h------~eid~i~~sl~rl~~~i~~~dk~ 94 (121)
T PF14276_consen 25 TDSIEEQLEQIEEAIEN---EDWEKAYKETEELEKEWDKNK-KRWSILIEH------QEIDNIDISLARLKGYIEAKDKS 94 (121)
T ss_pred HHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhc-hheeeeecH------HHHHHHHHHHHHHHHHHHCCCHH
Confidence 45677788888888887 778887777776666554333 323222221 34788999999999999999999
Q ss_pred chhHHHHHH
Q 017720 198 AVAPKQKEL 206 (367)
Q Consensus 198 ~~~~~~~~~ 206 (367)
........+
T Consensus 95 ~~l~el~~l 103 (121)
T PF14276_consen 95 ESLAELAEL 103 (121)
T ss_pred HHHHHHHHH
Confidence 877655443
No 42
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.46 E-value=1.8e+02 Score=23.51 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhhcCccchhHHHHHHHHHhhchhhhcccCCCC-CCCccc
Q 017720 169 KKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPY-EVPEEY 229 (367)
Q Consensus 169 ~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~~~~~~~~~L~~v~~lE~~~v~~~p~-~vP~~y 229 (367)
+-+.-+..|++|...|.+.+..++ +.....+-..+.+.+++....+..+- +-|+.|
T Consensus 16 r~AfQE~tieeLn~~laEq~~~i~-----k~q~qlr~L~~kl~~~~~~~~~~~~~etpPPHY 72 (72)
T COG2900 16 RLAFQEQTIEELNDALAEQQLVID-----KLQAQLRLLTEKLKDLQPSAIASPAEETPPPHY 72 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhcccccCCCcccCCCCCC
Confidence 344556777888888877776654 33444566778888888888877665 444444
No 43
>PF08559 Cut8_C: Cut8 six-helix bundle; InterPro: IPR013868 In Schizosaccharomyces pombe (Fission yeast), Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasomes []. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with the proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster (Fruit fly), Anopheles gambiae (African malaria mosquito) and Dictyostelium discoideum (Slime mold). ; PDB: 3Q5W_A 3Q5X_A.
Probab=30.85 E-value=93 Score=27.86 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=49.8
Q ss_pred hHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccch--hHHH-HHHHHHhhchhhhcccCCC
Q 017720 146 NVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAV--APKQ-KELLNYVGGVEEDMVDGFP 222 (367)
Q Consensus 146 ~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~~--~~~~-~~~L~~v~~lE~~~v~~~p 222 (367)
||..++.+|....+.|.+++|-..-....-.+..++..|.+|...+.+.-+.-. ...+ ..+|..+-.. -.++..+|
T Consensus 2 ~i~~~~~~L~~~~~~i~~s~Py~~~~~~dyaY~Rvk~~L~~F~~~L~D~~~~~lPP~~~~~~~sL~fl~~a-t~~v~~LP 80 (143)
T PF08559_consen 2 DIQSALEVLQQKQENIYKSFPYSRSVSSDYAYNRVKPHLLEFLKALSDFGLNFLPPNEQQWSTSLEFLDEA-TNIVHKLP 80 (143)
T ss_dssp -HHHHHHHHHHHHHHHHHTS-SSS-TTSHHHHHHHHHHHHHHHHHHHHHGGGGSTTT---HHHHHHHHHHH-HHHHHTS-
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHH-HHHHHHCC
Confidence 577889999999999999999776655577788899999998888887666655 2222 3344444432 33455555
No 44
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=25.76 E-value=69 Score=29.12 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCchhHHHHHHhh
Q 017720 255 ECVFRIVLDGYNAPVTAGNFVDLV 278 (367)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv 278 (367)
.-.++.+|..+.||.||+.|.++-
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred CeEEEEEEcccCChHHHHHHHHhC
Confidence 358999999999999999998876
No 45
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=25.21 E-value=4.5e+02 Score=26.07 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=40.8
Q ss_pred HHHHHHHHhHHHHHHHHhhcCccchh--HHHHHHHHHhhchhhhcccCCCCCCCcccccCCCC---CCceEEEEEeccCC
Q 017720 175 ELLQKLEAGMDELQQIVEDRDRDAVA--PKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLL---KGRATVDMKVKVKD 249 (367)
Q Consensus 175 ~l~~~l~~~l~~l~~~~~~kd~~~~~--~~~~~~L~~v~~lE~~~v~~~p~~vP~~y~~~P~l---~GratV~~~t~~~d 249 (367)
.-+.+|......|..++.......-+ .....+|...| |.++. +|..--.+ .++..++|.+...
T Consensus 48 ~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iLe~~g-----l~~~~------~y~~Q~~~~~~~~~~rpD~vI~LP- 115 (304)
T PF02646_consen 48 GEIQQLSQEASNLTSALKNSKTRGNWGEMQLERILEDSG-----LPEGC------DYETQVSLDEDGNGLRPDFVIHLP- 115 (304)
T ss_pred hHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHcC-----CCccc------chhhcccccCCCCCcCceEEEEcC-
Confidence 33577888888888888744433333 23355666655 22211 33333223 3455566666532
Q ss_pred CCCccceeEEEEEcCCCCchhH
Q 017720 250 NPNVDECVFRIVLDGYNAPVTA 271 (367)
Q Consensus 250 ~~~~~~G~I~IeLdg~~AP~Ta 271 (367)
.|+ .|.+|. .+|+++
T Consensus 116 -----~~~-~i~IDS-K~pl~~ 130 (304)
T PF02646_consen 116 -----GGR-HIPIDS-KFPLEA 130 (304)
T ss_pred -----CCC-EEEEec-CCCHHH
Confidence 233 666676 455544
No 46
>PRK10807 paraquat-inducible protein B; Provisional
Probab=24.93 E-value=2.2e+02 Score=30.85 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=42.0
Q ss_pred cCCCCCHhHHHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhc---ccchhhcccccchhHHHH-HHHHHHHHhHH
Q 017720 110 ALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQ---GKSLIVEGLAESKKEHGM-ELLQKLEAGMD 185 (367)
Q Consensus 110 alP~~n~~ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~---~~~~il~~vp~~~~~~~~-~l~~~l~~~l~ 185 (367)
-||-....+.+||+.+.+|-+.+.. -+...+..++..+++-+.. +-+..++.+-.--...+. .+..+|+..|+
T Consensus 407 vIPt~ps~l~~l~~~~~~il~kin~---lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 407 IIPTVSGGLAQIQQKLMEALDKINN---LPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 3777788888999888887776643 3445544443332222211 111111111111111222 33477777777
Q ss_pred HHHHHHhh
Q 017720 186 ELQQIVED 193 (367)
Q Consensus 186 ~l~~~~~~ 193 (367)
+++..++.
T Consensus 484 ~l~~~l~~ 491 (547)
T PRK10807 484 ELNRSMQG 491 (547)
T ss_pred HHHHHHhh
Confidence 77777765
No 47
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=24.42 E-value=1.2e+02 Score=29.10 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=42.1
Q ss_pred HHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccchhHH
Q 017720 150 ASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPK 202 (367)
Q Consensus 150 a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~~~~~ 202 (367)
..|+..+ ...+..++-..++....+.++++...|++|.+.++++|.+++...
T Consensus 204 ~tRia~~-~p~l~~~I~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d~~~l~~~ 255 (258)
T PF02153_consen 204 MTRIASS-DPELWADIFLSNPENLLEALDEFIKELNELREALEAGDEEELEEL 255 (258)
T ss_dssp HHGGGGS--HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hcccccC-ChHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3366653 446778888889999999999999999999999999999877654
No 48
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.86 E-value=3.5e+02 Score=29.17 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=48.0
Q ss_pred HHHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHh--hcC
Q 017720 118 VREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVE--DRD 195 (367)
Q Consensus 118 ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~--~kd 195 (367)
+++=|++||+|+..+ |....+..+|+.-...+...... ..-++++. -+|.++-+..+.|+.... +.|
T Consensus 201 Vkeee~k~eKiskR~-----~aleev~n~vk~l~em~l~~s~e--g~a~pd~E----~~lq~v~~~ce~lr~tlfrlase 269 (594)
T KOG1086|consen 201 VKEEEHKLEKISKRV-----KALEEVNNNVKLLEEMLLDYSQE--GNASPDNE----LLLQEVYNRCEQLRPTLFRLASE 269 (594)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccC--CCCCCcHH----HHHHHHHHHHHHHHHHHHHhhcc
Confidence 345588899999965 45788889999888877766655 33334433 345555555555554332 112
Q ss_pred ccchhHHHHHHHHHhh
Q 017720 196 RDAVAPKQKELLNYVG 211 (367)
Q Consensus 196 ~~~~~~~~~~~L~~v~ 211 (367)
-+.-....+++|+...
T Consensus 270 t~dnD~aL~eILqanD 285 (594)
T KOG1086|consen 270 TEDNDPALAEILQAND 285 (594)
T ss_pred cccCcHHHHHHHhhhh
Confidence 2222444555555444
No 49
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=23.78 E-value=73 Score=33.13 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=56.2
Q ss_pred hhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccchhHHHHH
Q 017720 126 EDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKE 205 (367)
Q Consensus 126 E~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~~~~~~~~ 205 (367)
.++-+.||..++|=| +++||..|..+|. .-|.+|+.+.... ...+=..|...|..|.. +..-|.+.+..+...
T Consensus 136 aEaeyLlrlA~qkL~--l~~Dv~tA~alLk-sAD~rLa~~~dP~---l~~lR~Aia~DI~~L~a-v~~vD~~Gl~lrL~~ 208 (390)
T PRK10920 136 AQADFLVKLAGRKLW--SDQDVTTAAALLK-SADASLADMNDPS---LITVRRAITDDIATLSA-VSQVDYDGIILKLNQ 208 (390)
T ss_pred HHHHHHHHHHHHHHH--HcCCHHHHHHHHH-HHHHHHHhcCCcc---hHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 335667777777644 6799998888885 7888888875433 33333445555666554 455788888888777
Q ss_pred HHHHhhchhhh
Q 017720 206 LLNYVGGVEED 216 (367)
Q Consensus 206 ~L~~v~~lE~~ 216 (367)
+.+.|.+|-..
T Consensus 209 L~~qVd~LpL~ 219 (390)
T PRK10920 209 LSNQVDNLRLA 219 (390)
T ss_pred HHHHHhhCCCC
Confidence 77777766554
No 50
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=23.66 E-value=2.5e+02 Score=25.67 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=41.0
Q ss_pred CCCCCHhHHHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHH
Q 017720 111 LPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQI 190 (367)
Q Consensus 111 lP~~n~~ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~ 190 (367)
+|++..+|-.+=..|.+|.+.+.. +...+.-.+ -.+|++-++...++++.+....+.+.++
T Consensus 73 tP~dRedi~~L~~~lD~I~d~i~~---------------~a~~l~~~~----~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 133 (214)
T PF01865_consen 73 TPFDREDILRLISSLDDIADYIED---------------AAKRLSLYK----VEIPEELREEFQELAEIVVEAIEELVEA 133 (214)
T ss_dssp -SS-HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHT--------CCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHhc----cCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888888776642 223332222 2357777777778888888888888777
Q ss_pred Hhh
Q 017720 191 VED 193 (367)
Q Consensus 191 ~~~ 193 (367)
+..
T Consensus 134 i~~ 136 (214)
T PF01865_consen 134 IEE 136 (214)
T ss_dssp HCC
T ss_pred HHH
Confidence 774
No 51
>PLN02666 5-oxoprolinase
Probab=22.88 E-value=2.5e+02 Score=33.79 Aligned_cols=81 Identities=6% Similarity=0.091 Sum_probs=50.9
Q ss_pred hhhhhccccccChh--hhhh-HHHHHHHHhccc-chhhc-----ccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccch
Q 017720 129 TDSLKIAGVKALDP--VERN-VRQASRTLKQGK-SLIVE-----GLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAV 199 (367)
Q Consensus 129 ~~~Lr~~~~k~w~~--~~~~-v~~a~~~l~~~~-~~il~-----~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~~ 199 (367)
.+-||+|-.|=|.. +.+| | .+++..+. +..-. ..|+.....=.++++..+.+-+.|+++++.--.+.|
T Consensus 884 qEGLriPpvKL~~~G~~~~d~v---~~li~~N~~~~~~~~~p~~R~P~~~~gDl~AqiAA~~~g~~Rl~el~~~yG~~~v 960 (1275)
T PLN02666 884 EEGAAIKAFKLVEGGVFQEEGI---TKLLQAPGSDETAPKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIDEYGLGTV 960 (1275)
T ss_pred HCccccccEEEEECCEECHHHH---HHHHHhCcccccccCCCCCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 45567777664433 2232 3 23443332 22222 466777777778889999999999999998888877
Q ss_pred hHHHHHHHHHhhc
Q 017720 200 APKQKELLNYVGG 212 (367)
Q Consensus 200 ~~~~~~~L~~v~~ 212 (367)
...-.++++...+
T Consensus 961 ~~~~~~~~~~se~ 973 (1275)
T PLN02666 961 QAYMGHVQANAEL 973 (1275)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666554433
No 52
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=22.67 E-value=1.3e+02 Score=26.86 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=40.6
Q ss_pred CHhHHHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhcccccc--hhHHHHHHHHHHHHhHHHHHHHHh
Q 017720 115 NKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAES--KKEHGMELLQKLEAGMDELQQIVE 192 (367)
Q Consensus 115 n~~ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~--~~~~~~~l~~~l~~~l~~l~~~~~ 192 (367)
|.-|.++-+.||+|...|..+ ..-..++..+...||..+-.+ .++.|++++..|+.=.++|+.-+.
T Consensus 15 ~~vI~d~~e~leei~~~L~~~------------e~I~emFr~D~e~Il~~~~~Gdi~eEEA~~ll~eL~~~asqL~~~~~ 82 (127)
T PF14591_consen 15 NSVIPDVEEDLEEIFESLADK------------EEIEEMFRSDLEDILEDYKSGDIDEEEALQLLDELKSYASQLQEHYF 82 (127)
T ss_dssp ------TSS-GGGHHH-HT-H------------HHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHcCH------------HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999988752 223345666777777766555 577889999998887777776544
No 53
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=21.12 E-value=4.5e+02 Score=24.33 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=19.3
Q ss_pred cCCCCCHhHHHHhhhHhhhhhhhh
Q 017720 110 ALPIDNKAVREVQKPLEDITDSLK 133 (367)
Q Consensus 110 alP~~n~~ir~iQ~~LE~i~~~Lr 133 (367)
-+|++..+|-.+=+.|.+|.+.++
T Consensus 75 itP~dReDi~~L~~~lD~I~D~i~ 98 (216)
T TIGR00153 75 FLPNDRRDLLELAELLDEILDSLE 98 (216)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHH
Confidence 469999999999888888776554
No 54
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=21.01 E-value=2.6e+02 Score=31.49 Aligned_cols=94 Identities=17% Similarity=0.284 Sum_probs=49.0
Q ss_pred HHHHhhhHhhhhhhhhccccccChhhhhhHHH---------HHHHHhc--ccchhhcccccchhHHHHHHHHHHHHhHHH
Q 017720 118 VREVQKPLEDITDSLKIAGVKALDPVERNVRQ---------ASRTLKQ--GKSLIVEGLAESKKEHGMELLQKLEAGMDE 186 (367)
Q Consensus 118 ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~---------a~~~l~~--~~~~il~~vp~~~~~~~~~l~~~l~~~l~~ 186 (367)
+.+|+.+||..+.-||-. ..|+....+|.. +...|.. +.=.+|..+|+ + +....+++.|+..|+.
T Consensus 110 ld~vK~rm~~a~~~L~EA--~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd-~-~~r~~~le~l~nrLEa 185 (766)
T PF10191_consen 110 LDSVKSRMEAARETLQEA--DNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPD-Y-EERRQQLEALKNRLEA 185 (766)
T ss_pred HHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCc-h-hHHHHHHHHHHHHHHH
Confidence 455566677777777754 569887765432 2222211 12235666762 2 2233445555555544
Q ss_pred -----HHHHHhhcCccchhHHHHHHHHHhhchhhh
Q 017720 187 -----LQQIVEDRDRDAVAPKQKELLNYVGGVEED 216 (367)
Q Consensus 187 -----l~~~~~~kd~~~~~~~~~~~L~~v~~lE~~ 216 (367)
|..++.++|.++...- ..++..++++.++
T Consensus 186 ~vsp~Lv~al~~~~~~~~~~~-~~if~~i~R~~~l 219 (766)
T PF10191_consen 186 LVSPQLVQALNSRDVDAAKEY-VKIFSSIGREPQL 219 (766)
T ss_pred HhhHHHHHHHHhcCHHHHHHH-HHHHHHcCCHHHH
Confidence 4566667776654432 3455555544443
No 55
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.56 E-value=2.6e+02 Score=26.97 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=52.6
Q ss_pred CHhHHHHhhhHhhhhhhhhcccc--ccChhhhhhHHHHHHHHhcccchhhcccccchhHHHHHHHHHHHHhHHHHHHHHh
Q 017720 115 NKAVREVQKPLEDITDSLKIAGV--KALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVE 192 (367)
Q Consensus 115 n~~ir~iQ~~LE~i~~~Lr~~~~--k~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~ 192 (367)
|+.+.++|..|..+...-.. |. +--..+.++|.+...-+ ++-+..+.+.|+..|.++---.++|......|+..+.
T Consensus 9 ~~~~~k~q~~l~rlE~~~~~-~e~~~v~~~i~~sI~~~~s~~-~rl~~~~~~epp~~rq~~rlr~dQl~~d~~~l~~~l~ 86 (213)
T KOG3251|consen 9 NRQLDKLQRGLIRLERTIKT-QEVSAVENSIQRSIDQYASRC-QRLDVLVSKEPPKSRQAARLRVDQLLEDVEHLQTSLR 86 (213)
T ss_pred HHHHHHHHHHHHHHHccccc-cchHHHHHHHHHhHHHHHHHH-HHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788877665443321 11 22456778887654444 5677788889999998888779999999888887665
Done!