RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017722
(367 letters)
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 581 bits (1498), Expect = 0.0
Identities = 253/361 (70%), Positives = 306/361 (84%), Gaps = 3/361 (0%)
Query: 1 MVEPFVKDFLGGDKVLGTEIEVNPRTKRATGFVKRPGVLVGKWKKLAVLKEFGEDAPDLG 60
MVEPFVK FLG DKVLGTE+EV+ ++ RATGF+K+PGVLVG K+ AVLKEFG+ PDLG
Sbjct: 135 MVEPFVKTFLGADKVLGTELEVS-KSGRATGFMKKPGVLVGDHKRDAVLKEFGDALPDLG 193
Query: 61 IGDRQTDHDFMSICKEGYMVLPSKSAKPLPRDRLKSRIIFHDGRLVQRPDPLNALITYIW 120
+GDR+TDHDFMSICKEGYMV P +PLPR++L S +IFH+GRLVQRP PL AL+T++W
Sbjct: 194 LGDRETDHDFMSICKEGYMV-PRTKCEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLW 252
Query: 121 LPFGFILSIIRVYFNLPLPERIVRYTYEMLGIHLVIRGNPPPAPSSGSPGNLYVCNHRTP 180
+P GFILS++RVY N+PLPERI RY Y++LGI L+++GNPPP P G PG L+VCNHRT
Sbjct: 253 MPIGFILSLLRVYLNIPLPERIARYNYKLLGIRLIVKGNPPPPPKKGQPGVLFVCNHRTV 312
Query: 181 LDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAIALTRDRAADAARISELLQKGDLVVCP 240
LDP+V A+ALGRK+SCVTYS+SK S +SPI A+AL+R+R DAA I LL++GDLV+CP
Sbjct: 313 LDPVVTAVALGRKISCVTYSISKFSELISPIKAVALSREREKDAANIKRLLEEGDLVICP 372
Query: 241 EGTTCRENFLLRFSALFAEMSDRIVPVAVNCKQNMFYGTTVRGVKFWDPYFFFMNPRPTY 300
EGTTCRE FLLRFSALFAE++DRIVPVA+N KQ+MF+GTTVRG K DPYF FMNPRPTY
Sbjct: 373 EGTTCREPFLLRFSALFAELTDRIVPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTY 432
Query: 301 EVTFLDRLPEEMTCKAGGKSAIEVANYVQKVLGDVLGFECTGLTRKDKYMLLGGNDGKVE 360
E+TFL++LP+E+TCK GGKS IEVANY+Q+VL LGFECT LTRKDKY +L G DG+V
Sbjct: 433 EITFLNQLPKELTCK-GGKSPIEVANYIQRVLAGTLGFECTNLTRKDKYAILAGTDGRVP 491
Query: 361 S 361
S
Sbjct: 492 S 492
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 417 bits (1073), Expect = e-144
Identities = 183/362 (50%), Positives = 239/362 (66%), Gaps = 8/362 (2%)
Query: 1 MVEPFVKDFLGGDKVLGTEIEVNPRTKRATGFVKRPGVLVGKWKKLAVLKEFGEDAPDLG 60
MVE F K+ L D+V+G+E+ VN R ATGF++ G V + V F ++ P LG
Sbjct: 121 MVERFAKEHLRADEVIGSELVVN-RFGFATGFIR--GTDVDQSVANRVANLFVDERPQLG 177
Query: 61 IGDRQTDHDFMSICKEGYMVLPSKSAKPLPRDRLKSR---IIFHDGRLVQRPDPLNALIT 117
+G F+S+CKE + P + + R +IFHDGRLV+RP P AL+
Sbjct: 178 LGRISASSSFLSLCKE-QIHPPFPANYNGDNQQQLVRPLPVIFHDGRLVKRPTPATALLI 236
Query: 118 YIWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGIHLVIRGNPPPAPSSGSPGNLYVCNH 177
+W+P G IL++IR++ + LP + Y + G ++++G PPP S G+ G L+VC H
Sbjct: 237 LLWIPLGIILAVIRIFVGIMLPMWAIPYVSRIFGGKVIVKGKPPPPASGGNSGVLFVCTH 296
Query: 178 RTPLDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAIALTRDRAADAARISELLQKGDLV 237
RT +DP+V++ LGR + VTYS+S+LS LSPIP + LTR R DA +I L +GDLV
Sbjct: 297 RTLMDPVVLSTVLGRSIPAVTYSISRLSEILSPIPTVRLTRIRDVDAEKIKRELARGDLV 356
Query: 238 VCPEGTTCRENFLLRFSALFAEMSDRIVPVAVNCKQNMFYGTTVRGVKFWDPYFFFMNPR 297
VCPEGTTCRE FLLRFSALFAE++DRIVPVA+N + F+ TT RG K DP FFFMNPR
Sbjct: 357 VCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPR 416
Query: 298 PTYEVTFLDRLPEEMTCKAGGKSAIEVANYVQKVLGDVLGFECTGLTRKDKYMLLGGNDG 357
P YEVTFL++LP E TC + GKS +VANYVQ++L LGFECT TRKDKY +L GNDG
Sbjct: 417 PVYEVTFLNQLPVEATCSS-GKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDG 475
Query: 358 KV 359
V
Sbjct: 476 TV 477
>gnl|CDD|215320 PLN02588, PLN02588, glycerol-3-phosphate acyltransferase.
Length = 525
Score = 285 bits (730), Expect = 4e-92
Identities = 146/298 (48%), Positives = 189/298 (63%), Gaps = 8/298 (2%)
Query: 70 FMSICKEGYMVLPS--KSAKPLPRDRLKSRIIFHDGRLVQRPDPLNALITYIWLPFGFIL 127
F C+E Y V S KS + LPRD+ +IFHDGRL +P PLN L+ ++W PF L
Sbjct: 227 FSQFCQEIYFVRNSDKKSWQTLPRDQYPKPLIFHDGRLAIKPTPLNTLVLFMWAPFAAAL 286
Query: 128 SIIRVYFNLPLPERIVRYTYEMLGIHLVIRGNPPPAPSSGSPGNLYVCNHRTPLDPIVIA 187
+ R+ F L LP + GIHL + N S G L+VCNHRT LDP+ I+
Sbjct: 287 AAARLVFGLNLPYSLANPFLAFSGIHLTLTVNDL-ISSDRKKGCLFVCNHRTLLDPLYIS 345
Query: 188 IALGRK-VSCVTYSVSKLSRFLSPIPAIALTRDRAADAARISELLQKGDLVVCPEGTTCR 246
AL +K + VTYS+S+LS L+PI + LTRDR D + +LL +GDLVVCPEGTTCR
Sbjct: 346 YALRKKNIKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQAMEKLLSQGDLVVCPEGTTCR 405
Query: 247 ENFLLRFSALFAEMSDRIVPVAVNCKQNMFYGTTVRGVKFWDPYFFFMNPRPTYEVTFLD 306
E +LLRFS LF+E+ D IVPVA++ FYGTT G+K +DP FF +NP P+Y V LD
Sbjct: 406 EPYLLRFSPLFSEVCDVIVPVAIDSHVTFFYGTTASGLKAFDPIFFLLNPFPSYTVQLLD 465
Query: 307 RL--PEEMTCKA--GGKSAIEVANYVQKVLGDVLGFECTGLTRKDKYMLLGGNDGKVE 360
+ TC+ GK EVAN+VQ +G+ LGFECT LTR+DKY++L GN+G V+
Sbjct: 466 PVSGSSSSTCQDPDNGKLKFEVANHVQHEIGNALGFECTNLTRRDKYLILAGNNGVVK 523
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 89.0 bits (221), Expect = 5e-21
Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 38/202 (18%)
Query: 147 YEMLGIHLVIRGNPPPAPSSGSPGNLYVCNHRTPLDPIVIAIALGR-KVSCVTYSVSKLS 205
+ L ++G PPP L+V NH + D +++ + L R V + +
Sbjct: 7 NFFGFVRLEVKGPPPPPGGGPV---LFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEEL 63
Query: 206 ----RFLSPIPAIALTRDRAADAAR----ISELLQKGD--LVVCPEGTTCREN-FLLRFS 254
F + + A ++ RD AA+ ++ LL K + + PEGT R + L+F
Sbjct: 64 LERYPFFTRLGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDKRPLQFK 123
Query: 255 ALFAEMSDR----IVPVAVNCKQNMFYGTTVRGVKFWDPYFFFMNPRPTYEVTFLDRLPE 310
A ++++ IVPVA+ +F + + F + P Y T
Sbjct: 124 PGVAHLAEKAGVPIVPVALRYTFELF--------EQFPEIFVRIGPPIPYAETA------ 169
Query: 311 EMTCKAGGKSAIEVANYVQKVL 332
G + A E+AN + ++L
Sbjct: 170 -----LGEELAAELANRLTRLL 186
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 70.4 bits (173), Expect = 2e-14
Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 29/200 (14%)
Query: 143 VRYTYEMLGIHLVIRGNPPPAPSSGSPGNLYVCNHRTPLDPIVIAIALGRKVSCVT---- 198
+R +LG+ + + G P + V NH++ LDP+V+ AL R + V
Sbjct: 1 LRLLLRLLGVRVRVEGLENLPPKGPV---IIVANHQSYLDPLVLGAALPRPIRFVAKKEL 57
Query: 199 YSVSKLSRFLSPIPAIALTRDRAADAA----RISELLQKGD-LVVCPEGTTCRENFLLRF 253
+ + L L + AI + R A E L++G+ +V+ PEGT R+ LL F
Sbjct: 58 FKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGESVVIFPEGTRSRDGELLPF 117
Query: 254 ---SALFAEMSD-RIVPVAVNCKQNMFYGTTVRGVKFWDPYFFFMNPRPTYEVTFLDRLP 309
+ A+ + IVPVA + G P + V + +P
Sbjct: 118 KSGAFRLAKEAGVPIVPVA------------ISGTWGSLPKGKKLPRPGRVTVRIGEPIP 165
Query: 310 EEMTCKAGGKSAIEVANYVQ 329
E A + E+ V+
Sbjct: 166 PEGLELA-EEDRKELREKVR 184
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 68.2 bits (167), Expect = 3e-14
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 172 LYVCNHRTPLDPIVIAIALGRKVSCVTYSVSK-------LSRFLSPIPAIALTRDRAADA 224
L V NH++ LDP+V++ L RK+ V + K L L + AI + R A
Sbjct: 2 LVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRKA 61
Query: 225 ----ARISELLQKGD-LVVCPEGTTCRENFLLRF---SALFAEMSD-RIVPVAVNC 271
ELL++G+ L++ PEGT R LL F +A A + IVPVA+
Sbjct: 62 RAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRG 117
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 60.8 bits (148), Expect = 2e-11
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 18/115 (15%)
Query: 172 LYVCNHRTPLDPIVIAIALGRKVSCVTYSVSK--------LSRFLSPIPAIALTRDRAAD 223
+ V NH++ LDP+++++ L K V+K L + + I + R A D
Sbjct: 17 IVVANHQSYLDPLLLSLLLP-KRGRPLVFVAKDELLNLPLLGWLMRLLGCIFIDRKNAKD 75
Query: 224 AA----RISELLQKGDLV-VCPEGTTCRENFLLRF---SALFAEMSDR-IVPVAV 269
AA + ELL++G+LV + PEGT R LL F + A + IVPVA+
Sbjct: 76 AANTLEYLVELLREGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVPIVPVAI 130
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 58.8 bits (143), Expect = 3e-10
Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 38/221 (17%)
Query: 150 LGIHLV-IRGNPPPAPSSGSPGNLYVCNHRTPLDPIVIAIALGRKVSCVTYS-VSKLSRF 207
G +++ + G P P + + V NH + +DP+++ S + S V+K
Sbjct: 8 FGFYVIKVHGKPDPPEAPR----IIVANHTSFIDPLILF-------SDLFPSIVAKKELG 56
Query: 208 LSPI--------PAIALTRDRAADAARISE-LLQKGD------LVVCPEGTTCRENFLLR 252
P I + R D ++ E + ++ +++ PEGTT L+
Sbjct: 57 KLPFIGTILRALGCIFVDRSEPKDRKKVVEEIKERATDPNWPPILIFPEGTTTNGKALIM 116
Query: 253 FSALFAEMSDRIV-PVAV--NCKQNMFYGTTVRGVKFWDPYFFFM-NPRPTYEVTFLDRL 308
F A V PVA+ K + G F + P EV FL
Sbjct: 117 FK-KGAFEPGVPVQPVAIRYPNK-FVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFL--- 171
Query: 309 PEEMTCKAGGKSAIEVANYVQKVLGDVLGFECTGLTRKDKY 349
T G+ E AN V+ ++ + LG T T +DK
Sbjct: 172 -PVYTPSEEGEDPKEFANRVRLIMANKLGLPATDWTGEDKR 211
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 46.8 bits (111), Expect = 7e-06
Identities = 49/220 (22%), Positives = 78/220 (35%), Gaps = 31/220 (14%)
Query: 111 PLNALITYIWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGIHLVIRGNPPPAPSSGSPG 170
L + I L + R +V + G+ + + G P G
Sbjct: 15 LLPLPLALIALFRLRRPVLRRWLR------FLVLLLLLLFGLRVEVEG-LENLPKGG--P 65
Query: 171 NLYVCNHRTPLDPIVIAIALGRKVSCVTYSVSK--------LSRFLSPIPAIALTRDRAA 222
L V NH++ LDP+++++AL R+ V+K L L + AI + R+
Sbjct: 66 ALVVANHQSFLDPLLLSLALPRRGP--VRFVAKKELFKVPLLGWLLRLLGAIPVDRENPD 123
Query: 223 DAA---RISELLQKGD-LVVCPEGT-TCRENFLLRF---SALFAEMSD-RIVPVAVNCKQ 273
D ++ L G LV+ PEGT + LL F +A A + IVPVA+ +
Sbjct: 124 DETLRAAVARLKAGGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVAIVGAE 183
Query: 274 NMFYGTTVRGVKFWDPYFFFMNPRPTYEVTFLDRLPEEMT 313
+F L L E +
Sbjct: 184 ELF---PSLKKGKVKVRIGPPIDISALPEPLLPELAEAVE 220
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 35.4 bits (82), Expect = 0.012
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 155 VIRGNPPPAPSSGSPGNLYVCNHRTPLDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAI 214
V P P+ L V NH++ LDP+ L ++K P I
Sbjct: 4 VEVVGPENLPAKS--PVLVVANHQSNLDPLT----LSAAFPPPIVFIAKKELKWIPFFGI 57
Query: 215 ALT---------RDRAADAARIS---ELLQKGDLV-VCPEGTTCRENFLLRF------SA 255
L + A A + E+L++G + V PEGT R +L F A
Sbjct: 58 MLWLTGAIFIDRENIRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKKGAFHIA 117
Query: 256 LFAEMSDRIVPVAV 269
+ A + I+PV +
Sbjct: 118 IKAGVP--ILPVVL 129
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 34.5 bits (80), Expect = 0.040
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 34/132 (25%)
Query: 151 GIHLVIRGNPPPAPSSGSPGN-LYVCNHRTPLDPIVI------AIALGR---------KV 194
G+ +V+ G+ P P L + NHR+ +D +V+ LGR K
Sbjct: 9 GVKVVVYGDEPKLP----KERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKY 64
Query: 195 SCVTYSVSKLSRFLSPIPAIALTRDRAADAARISELLQK-------GDLVVCPEGTTCRE 247
+ +L F I L R D I L++ L++ PEGT E
Sbjct: 65 PPLGGWGWQLGEF------IFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTE 118
Query: 248 NFLLRFSALFAE 259
R S FAE
Sbjct: 119 EKKER-SQEFAE 129
>gnl|CDD|227096 COG4754, COG4754, Uncharacterized conserved protein [Function
unknown].
Length = 157
Score = 32.8 bits (75), Expect = 0.14
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 231 LQKGDLVVCPEGTTCRENFLLRFSALFAEMSDRIVPVAVNCKQNMFYGTTVRGVKFWDPY 290
+ GD+++ EG E+ + LF + I P A + + + V F +
Sbjct: 60 AESGDIILTDEGKEYVESPIRERKELFRQKLKNIEPFATHLRLRLDDIEEAMEVLFEEEL 119
Query: 291 FFFMNP 296
+ +P
Sbjct: 120 ETYNSP 125
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 32.6 bits (75), Expect = 0.43
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 33/167 (19%)
Query: 114 ALITYIWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGIHLVIRGNPPPAPSSGSPGNLY 173
L T + LP + ++ + + RY + G + P+ G G L
Sbjct: 403 TLYTLLLLPDSLLRFLLLLLMHT-------RYRLRVEGRENI--------PAKG--GALL 445
Query: 174 VCNHRTPLDPIVIAIALGRKVSCVTYS-------VSKLSRFLSPIPAIALTRDRAADAAR 226
+ NH + +D ++ A R + V + + IP I+ + +
Sbjct: 446 LGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFFKLFGVIP-ISSGGSKESLEF- 503
Query: 227 ISELLQKGDLVVC--PEGTTCRENFLLRFSALF---AEMSD-RIVPV 267
I + L G+ VVC PEG R L F F + +D I+P
Sbjct: 504 IRKALDDGE-VVCIFPEGAITRNGQLNEFKRGFELIVKGTDVPIIPF 549
>gnl|CDD|177618 PHA03381, PHA03381, tegument protein VP22; Provisional.
Length = 290
Score = 30.4 bits (68), Expect = 1.4
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 157 RGNPPPAPSSGSPGNLYVCNHRTPLDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAIAL 216
RG PA S G + R P +P + GRK +C + L PA A
Sbjct: 106 RGARGPAGSRGRGRRAESPSPRDPPNPKGASAPRGRKSACADSAA------LLDAPAPAA 159
Query: 217 TRDRAADAA 225
+ + A
Sbjct: 160 PKRQKTPAG 168
>gnl|CDD|191489 pfam06297, PET, PET Domain. This domain is suggested to be
involved in protein-protein interactions. The family is
found in conjunction with pfam00412.
Length = 106
Score = 28.0 bits (63), Expect = 2.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 97 RIIFHDGRLVQRPDPLNALITYIWLPFGFILSIIRVYFNLPLPERIVRYT 146
R+IF + D AL+TY W+P G ++ Y L LPE V
Sbjct: 1 RMIFTN-PSASDKDSGCALVTYAWVPPGLTPELVHRYMEL-LPEEKVPVV 48
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 255
Score = 29.1 bits (66), Expect = 3.6
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 214 IALTRDRAADAARISELLQKG-----DLVVCPEGTTCRENFLLRFSALFAE 259
A + D+ + ++ LL + DLVV PE T R L A AE
Sbjct: 6 FASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAE 56
>gnl|CDD|217269 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain. As well as
being found in pyruvate kinase this family is found as
an isolated domain in some bacterial proteins.
Length = 117
Score = 27.1 bits (61), Expect = 6.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 198 TYSVSKLSRFLSPIPAIALTRDRAADAARISELLQKGDLVV 238
+ V R +S IA A DA L++KGDLVV
Sbjct: 61 VHPVLGDERSISTDEIIAEALRMAKDA----GLVKKGDLVV 97
>gnl|CDD|192395 pfam09821, ABC_transp, ABC nitrate/sulfonate/bicarbonate family
transporter, ATPase subunit. Members of this family are
found in various prokaryotic ABC transporters,
predominantly involved in nitrate, sulfonate and
bicarbonate translocation.
Length = 120
Score = 27.1 bits (61), Expect = 6.9
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 221 AADAARISEL--LQKGDLVVCPEGTTCRENFLLRFSALFAEMSDRIVPVA 268
+AA + L+ GD+ + P G E + LFAE VP+A
Sbjct: 17 IVEAAELLGFAELEGGDIELTPLGRRFAEADIDERKELFAEQLLAHVPLA 66
>gnl|CDD|217161 pfam02639, DUF188, Uncharacterized BCR, YaiI/YqxD family COG1671.
Length = 130
Score = 27.0 bits (61), Expect = 8.5
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 184 IVIAIALGRKVSCVTYSVSKLSRFLSPIPAIALTR----DRAADAA--RISELLQKGDLV 237
I+ A + + ++ +P L D DAA I E + GDLV
Sbjct: 1 IIFRAAERHGIPVTLVA----NQPH-RLPPSPLIESVVVDAGFDAADDYIVERAEPGDLV 55
Query: 238 VC 239
+
Sbjct: 56 IT 57
>gnl|CDD|237326 PRK13271, treA, trehalase; Provisional.
Length = 569
Score = 28.0 bits (62), Expect = 9.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 230 LLQKGDLVVCPEGTTCRENF-----LLRFSALFAEMSDRIVPVAVNCKQNMFYGTTVRGV 284
L ++G+ V PEG + RE+ +L S E D ++P+ + + G R V
Sbjct: 104 LPKEGEKYVPPEGQSLREHIDGLWPVLTRSTENTEKWDSLLPLP---EPYVVPGGRFREV 160
Query: 285 KFWDPYF 291
+WD YF
Sbjct: 161 YYWDSYF 167
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit
(UDP-forming). Cellulose synthase catalyzes the
beta-1,4 polymerization of glucose residues in the
formation of cellulose. In bacteria, the substrate is
UDP-glucose. The synthase consists of two subunits (or
domains in the frequent cases where it is encoded as a
single polypeptide), the catalytic domain modelled here
and the regulatory domain (pfam03170). The regulatory
domain binds the allosteric activator cyclic di-GMP. The
protein is membrane-associated and probably assembles
into multimers such that the individual cellulose
strands can self-assemble into multi-strand fibrils.
Length = 713
Score = 28.1 bits (63), Expect = 9.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 274 NMFYGTTVRGVKFWDPYFF 292
+FYG G FW+ FF
Sbjct: 289 ELFYGLIQDGNDFWNAAFF 307
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.142 0.435
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,570,476
Number of extensions: 1949280
Number of successful extensions: 1745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 32
Length of query: 367
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 269
Effective length of database: 6,590,910
Effective search space: 1772954790
Effective search space used: 1772954790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)