RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017722
         (367 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 30.4 bits (68), Expect = 0.30
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 45/157 (28%)

Query: 172 LYVCNHRTPLDPIVIAIALGRKVSCV---TYSVSKLSRFLSPI----------------- 211
           + + NH+T  DP +I++ L +    +   T  V+       P+                 
Sbjct: 133 VLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKK 192

Query: 212 ----PAIALTRDRAADAARISELLQKGD-----LVVCPEGTTCRENF------------- 249
                       R A+   + E+          + + P G   R +              
Sbjct: 193 HMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDAS 252

Query: 250 ---LLRFSALFAEMSDRIVPVAVNCKQNMFYGTTVRG 283
               +R     +++   + P+A+ C   M   + V  
Sbjct: 253 SVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEI 289


>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase
           {Enterobacter cloacae [TaxId: 550]}
          Length = 196

 Score = 29.5 bits (65), Expect = 0.49
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 212 PAIALTRDRAADAARISELLQKGDLVVCPEGTTCRENFLLRF 253
           P  +LT++       +   ++ GD+++  +GT+      LR 
Sbjct: 1   PDGSLTQENFWRT--LQTFIRPGDIILADQGTSAFGAIDLRL 40


>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 142

 Score = 28.1 bits (62), Expect = 0.96
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 267 VAVNCKQNMFYGTTVRGVKFWDPYFFFMNPRPTYEVTFLDRLPEEMTCKA 316
           V +N  Q    G  +    +     +    +       L + PE +   A
Sbjct: 52  VVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHA 101


>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 179

 Score = 26.3 bits (58), Expect = 5.0
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 220 RAADAARISELLQKGDLVVCPEGT----TCRENFLLRFSALFAE 259
           R  +   I   ++KGD++  P G     T  E   ++   LF  
Sbjct: 108 RDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVG 151


>d1nbwa1 c.8.6.1 (A:92-256) Swiveling domain of the glycerol
           dehydratase reactivase alpha subunit {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 165

 Score = 25.8 bits (57), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 6/25 (24%)

Query: 301 EVTFLDRLPEEMTCKAGGKSAIEVA 325
           EVT L+++PE +        A+EVA
Sbjct: 95  EVTLLEQVPEGVMA------AVEVA 113


>d2d0oa1 c.8.6.1 (A:93-254) Diol dehydratase-reactivating factor
           large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
          Length = 162

 Score = 25.8 bits (57), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 6/25 (24%)

Query: 301 EVTFLDRLPEEMTCKAGGKSAIEVA 325
           EV ++DR+P  M        AIEVA
Sbjct: 92  EVLYIDRIPLGMLA------AIEVA 110


>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
          {Thermus thermophilus [TaxId: 274]}
          Length = 105

 Score = 24.8 bits (54), Expect = 9.7
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 5  FVKDFLGGDKVLGTEIEVNPRTKRATGFVKRPGVLVGK 42
           ++  L    +   +IE        T  V +PGV++G+
Sbjct: 41 LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGR 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,456,715
Number of extensions: 71763
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 8
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)