BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017723
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 205 RQFMHLPPEPPAIIEETKPPASWPS-HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXX 263
++ + + E PAI EE + P+ G + E+++ RY NT VL G+ + K
Sbjct: 314 KRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLV 372
Query: 264 XXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS 323
L++ + RL++PE GR+ +D LD+ ++ LKDLR +S +PQE LF G+
Sbjct: 373 AVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGT 432
Query: 324 VRTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPMLLDS 361
++ NL +D+EI EA + Q+ I LP DS
Sbjct: 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS 471
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEP 286
WPS G++ ++DL +Y +L+ I+ + L+SA RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 287 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKC 346
E G I IDG+ S+ L+ R +IPQ+ +F G+ R NLDP +SD EIW+ ++
Sbjct: 74 E-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 347 QLKATISRLPMLLD 360
L++ I + P LD
Sbjct: 133 GLRSVIEQFPGKLD 146
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 153/375 (40%), Gaps = 44/375 (11%)
Query: 3 FFDSTPVGRIFTRVSSDMSTMD-------FDLPSAISLSAAATTDVFIIIAVMASVTWPV 55
FFD TP G I +RV +D+ ++ S I A A +F + +++ VT +
Sbjct: 127 FFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSI 186
Query: 56 L-IVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAF----KM 110
+ + + T IV+ + Y+ + R L ++NG + I G+ I+ F K
Sbjct: 187 VPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDI--------SGLTVIKLFTREEKE 238
Query: 111 MDMF--FENYLKLVDTDARLFFHSNAATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPG 168
M+ F L+ V T A++F +V + +
Sbjct: 239 MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIAT 298
Query: 169 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPE---PPAI-IEETKPP 224
F+G S + L+ ++ + + + S ERI + + L E P A+ + E +
Sbjct: 299 FIGYSRQFTRPLNE----LSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVR-- 352
Query: 225 ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLV 284
G IE +++ Y P VLK IT K +++ L R
Sbjct: 353 ------GEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405
Query: 285 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWE 341
+ + G+IL+DG+DI + LR+ + I+ Q+ LF +V+ NL +P +D EI E
Sbjct: 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA--TDEEIKE 463
Query: 342 AMEKCQLKATISRLP 356
A + I LP
Sbjct: 464 AAKLTHSDHFIKHLP 478
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/384 (22%), Positives = 144/384 (37%), Gaps = 45/384 (11%)
Query: 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAIS--LSAAATTDVFIIIAVMASVTWPVLIVAI 60
FFD T G + R+SSD + + + +S L A A V I + S ++++
Sbjct: 143 FFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSV 202
Query: 61 -PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYL 119
P V + I G YL R+L ++ + A A E V ++RAF E Y
Sbjct: 203 VPPVSIIAVIYGRYL---RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYA 259
Query: 120 KLVD-----------TDARLFFHSNAATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPG 168
VD A F + + +VL + +
Sbjct: 260 SKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYA 319
Query: 169 F-VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP---AIIEETKPP 224
F VG+S+ ++ +Y L + + R+ + + P+ P +I K
Sbjct: 320 FWVGISIGG----------LSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKS- 368
Query: 225 ASWPSHGRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFR 282
G +E +++ Y RP P + + + + ++S L R
Sbjct: 369 ----FQGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 423
Query: 283 LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL-----DPLGMYSDN 337
L +P +G I +DG DI + LR+K+ + QEP LF S+ N+ DP + ++
Sbjct: 424 LYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE- 482
Query: 338 EIWEAMEKCQLKATISRLPMLLDS 361
EI E A I P ++
Sbjct: 483 EIQRVAEVANAVAFIRNFPQGFNT 506
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 140/376 (37%), Gaps = 39/376 (10%)
Query: 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAIS--LSAAATTDVFIIIAVMASVTWPVLIVAI 60
FFD T G + R+SSD + + + +S L A A V I + S ++++
Sbjct: 112 FFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSV 171
Query: 61 -PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYL 119
P V + I G YL R+L ++ + A A E V ++RAF E Y
Sbjct: 172 VPPVSIIAVIYGRYL---RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYA 228
Query: 120 KLVD-----------TDARLFFHSNAATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPG 168
VD A F + + +VL + +
Sbjct: 229 SKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYA 288
Query: 169 F-VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASW 227
F VG+S+ ++ +Y L + + R+ + + P+ P E
Sbjct: 289 FWVGISIGG----------LSSFYSELMKGLGAGGRLWELLEREPKLP--FNEGVILNEK 336
Query: 228 PSHGRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVE 285
G +E +++ Y RP P + + + + ++S L RL +
Sbjct: 337 SFQGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395
Query: 286 PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL-----DPLGMYSDNEIW 340
P +G I +DG DI + LR+K+ + QEP LF S+ N+ DP + ++ EI
Sbjct: 396 PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQ 454
Query: 341 EAMEKCQLKATISRLP 356
E A I P
Sbjct: 455 RVAEVANAVAFIRNFP 470
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/380 (21%), Positives = 155/380 (40%), Gaps = 42/380 (11%)
Query: 3 FFDSTPVGRIFTRVSSDM-STMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAI- 60
F+ + VG++ +RV +D+ T DF L +++ T + I +++M + + + A+
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCIT-IIIALSIMFFLDVKLTLAALF 169
Query: 61 --PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENY 118
P I+ Y+ + R+L R A + F E QG+ +++F + D
Sbjct: 170 IFPFYILTVYV---FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIED------ 220
Query: 119 LKLVDTDARLFFHSNAATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPGFVG--LSLSY 176
+A+ F N T +L ++ G + VG L++S
Sbjct: 221 -----NEAKNFDKKN--TNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISG 273
Query: 177 ALTLSSIQVI-------------MTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKP 223
++T+ ++ + + L+ + S++R+ Q L E I
Sbjct: 274 SITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQ---LIDEDYDIKNGVGA 330
Query: 224 PASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRL 283
GRI+++ + +Y N +LK I + ++ LI+ + R
Sbjct: 331 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390
Query: 284 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--MYSDNEIWE 341
+ +G+ILIDG +I LR ++ ++ Q+ LF +V+ N+ LG +D E+ E
Sbjct: 391 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI-LLGRPTATDEEVVE 449
Query: 342 AMEKCQLKATISRLPMLLDS 361
A + I LP D+
Sbjct: 450 AAKMANAHDFIMNLPQGYDT 469
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 22/157 (14%)
Query: 217 IIEETKPPASWPSHG--------RIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXX 266
IIE+T S+ + G ++ + Y RP+ P VL+G++ K+
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALV 1065
Query: 267 XXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326
++ L R +P G + +DG +I + ++ LR +L I+ QEP LF S+
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 327 NLDPLGMYSDN-------EIWEAMEKCQLKATISRLP 356
N+ Y DN EI A ++ + I LP
Sbjct: 1126 NI----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLP 1158
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 230 HGRIELEDLKVRYRPNTPL-VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G +E +++ Y + +LKG+ K + + RL +P +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNEIWEAME 344
G + IDG DI ++ ++ LR + ++ QEP LF ++ N+ + + M +EI +A++
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM---DEIEKAVK 501
Query: 345 KCQLKATISRLPMLLDS 361
+ I +LP D+
Sbjct: 502 EANAYDFIMKLPHQFDT 518
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 22/157 (14%)
Query: 217 IIEETKPPASWPSHG--------RIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXX 266
IIE+T S+ + G ++ + Y RP+ P VL+G++ K+
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALV 1065
Query: 267 XXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326
++ L R +P G + +DG +I + ++ LR +L I+ QEP LF S+
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 327 NLDPLGMYSDN-------EIWEAMEKCQLKATISRLP 356
N+ Y DN EI A ++ + I LP
Sbjct: 1126 NI----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLP 1158
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 230 HGRIELEDLKVRYRPNTPL-VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G +E +++ Y + +LKG+ K + + RL +P +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNEIWEAME 344
G + IDG DI ++ ++ LR + ++ QEP LF ++ N+ + + M +EI +A++
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM---DEIEKAVK 501
Query: 345 KCQLKATISRLPMLLDS 361
+ I +LP D+
Sbjct: 502 EANAYDFIMKLPHQFDT 518
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 289
H I +++ RY+P++P++L I + K+ L + R PENG
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEA 342
++LIDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 115
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 289
H I +++ RY+P++P++L I + K+ L + R PENG
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEA 342
++LIDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 115
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 231 GRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G I +E++ Y RP+ P +L+G+ +IS L R +
Sbjct: 414 GDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328
G+I IDG+D+ + L+ LR ++++ QEP LF ++ N+
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENI 512
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 230 HGRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE 287
+G++ ++++ Y RP +LKG++ + + +++ L R +
Sbjct: 1074 YGKVIFKNVRFAYPERPEIE-ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132
Query: 288 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWEAM 343
G I IDG +I ++ + R++++I+ QEPTLF S+ N LDP + + ++ EA
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV-TMAQVEEAA 1191
Query: 344 EKCQLKATISRLP 356
+ I+ LP
Sbjct: 1192 RLANIHNFIAELP 1204
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 18/131 (13%)
Query: 3 FFDS--TPVGRIFTRVSSDM----STMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVL 56
FFDS G+I TR+++D+ + +DF + I+ + I +A +L
Sbjct: 844 FFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAG--IGLAFFYGWQMALL 901
Query: 57 IVAI-PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN---FAAETSQGVVSIRAFKMMD 112
I+AI P V +Y++G R N + + + A E + V +++A D
Sbjct: 902 IIAILPIVAFGQYLRG------RRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARED 955
Query: 113 MFFENYLKLVD 123
F+EN+ + +D
Sbjct: 956 TFYENFCEKLD 966
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 235 LEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILID 294
L D+ +PN+ + G + K + S L R +P G I ID
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGK---------------STIFSLLERFYQPTAGEITID 62
Query: 295 GLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL--DPLGMYSDNEIWEAMEKCQLKATI 352
G I ++ L++ R+++ + Q+ + G++R NL G Y+D ++W+ ++ ++ +
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 353 SRLPMLLDS 361
+P L++
Sbjct: 123 ENMPDQLNT 131
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEA 342
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 119
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEA 342
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 113
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEA 342
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 119
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEA 342
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 113
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEA 342
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 119
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 223 PPASW--PSH--GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXL 276
PP+ P H G ++ +D+ Y PN P LVL+G+T T + +
Sbjct: 1 PPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 277 ISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSD 336
+ L L +P G++L+DG + + L +++ + QEP +F S++ N+ G+
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENI-AYGLTQK 118
Query: 337 ---NEIWEAMEKCQLKATISRLPMLLDS 361
EI A K + IS LP D+
Sbjct: 119 PTMEEITAAAVKSGAHSFISGLPQGYDT 146
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 231 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328
G++L+DG + L T+++ + QEP LF S R N+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI 113
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 231 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328
G++L+DG + L T+++ + QEP LF S R N+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI 113
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 231 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328
G++L+DG + L T+++ + QEP LF S R N+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI 113
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 224 PASWP---SHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISAL 280
P + P GRIE E++ Y + L+ ++ T ++ L
Sbjct: 42 PGAGPLRFQKGRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
Query: 281 FRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW 340
FR + +G I IDG DI + LR+ + ++PQ+ LF ++ N+ + + N+
Sbjct: 101 FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160
Query: 341 EAMEKC 346
EA +
Sbjct: 161 EAAAQA 166
>pdb|1UP7|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
Length = 417
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMYS--DNEIWEAMEK 345
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + ++++ +
Sbjct: 200 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKIST 259
Query: 346 CQLKA 350
+L+A
Sbjct: 260 HELRA 264
>pdb|1UP6|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
Length = 416
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMY--SDNEIWEAMEK 345
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + + ++ +
Sbjct: 199 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLXEKKXFKKIST 258
Query: 346 CQLKA 350
+L+A
Sbjct: 259 HELRA 263
>pdb|1UP4|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
Length = 415
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMY--SDNEIWEAMEK 345
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + + ++ +
Sbjct: 198 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLXEKKXFKKIST 257
Query: 346 CQLKA 350
+L+A
Sbjct: 258 HELRA 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,050,576
Number of Sequences: 62578
Number of extensions: 310998
Number of successful extensions: 662
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 38
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)