Query 017723
Match_columns 367
No_of_seqs 148 out of 1950
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 4.4E-71 9.5E-76 524.9 37.6 363 1-367 236-602 (716)
2 KOG0054 Multidrug resistance-a 100.0 1.2E-65 2.5E-70 524.8 40.5 367 1-367 906-1273(1381)
3 COG2274 SunT ABC-type bacterio 100.0 2.3E-65 4.9E-70 503.6 40.6 363 1-367 242-607 (709)
4 TIGR02868 CydC thiol reductant 100.0 1.1E-62 2.3E-67 483.4 42.7 363 2-367 102-468 (529)
5 TIGR00957 MRP_assoc_pro multi 100.0 7.5E-62 1.6E-66 521.0 44.9 367 1-367 1053-1419(1522)
6 KOG0055 Multidrug/pheromone ex 100.0 1.4E-61 3E-66 484.5 39.5 365 1-367 755-1124(1228)
7 PRK11174 cysteine/glutathione 100.0 7.8E-61 1.7E-65 475.9 42.5 361 2-367 112-483 (588)
8 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.7E-60 3.8E-65 480.5 43.5 360 2-367 225-586 (686)
9 PLN03130 ABC transporter C fam 100.0 1.7E-60 3.7E-65 510.0 45.4 367 1-367 1001-1372(1622)
10 TIGR00958 3a01208 Conjugate Tr 100.0 3.9E-60 8.5E-65 477.8 42.4 362 2-367 250-615 (711)
11 COG1132 MdlB ABC-type multidru 100.0 1E-59 2.2E-64 465.5 41.3 360 2-367 101-463 (567)
12 PLN03232 ABC transporter C fam 100.0 1.7E-59 3.8E-64 502.1 45.5 367 1-367 998-1369(1495)
13 TIGR01193 bacteriocin_ABC ABC- 100.0 1.4E-59 3.1E-64 475.3 41.4 361 2-367 245-609 (708)
14 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.8E-59 3.8E-64 475.1 41.8 365 2-367 243-613 (710)
15 TIGR02857 CydD thiol reductant 100.0 5.8E-59 1.3E-63 457.0 43.0 361 2-367 93-456 (529)
16 PTZ00243 ABC transporter; Prov 100.0 4.6E-59 9.9E-64 498.4 45.6 367 1-367 1046-1443(1560)
17 PRK11160 cysteine/glutathione 100.0 6.9E-59 1.5E-63 459.0 42.7 361 2-367 109-473 (574)
18 TIGR03375 type_I_sec_LssB type 100.0 6.1E-59 1.3E-63 469.8 43.1 359 5-367 238-599 (694)
19 PRK11176 lipid transporter ATP 100.0 1.2E-58 2.5E-63 460.0 42.4 361 2-367 114-478 (582)
20 PRK10790 putative multidrug tr 100.0 7.5E-58 1.6E-62 454.6 42.7 359 2-367 114-474 (592)
21 TIGR02203 MsbA_lipidA lipid A 100.0 7.2E-58 1.6E-62 453.8 42.2 361 2-367 103-467 (571)
22 PTZ00265 multidrug resistance 100.0 4E-58 8.7E-63 487.7 42.1 366 2-367 915-1356(1466)
23 TIGR01271 CFTR_protein cystic 100.0 1.3E-57 2.8E-62 486.9 43.8 365 1-367 973-1351(1490)
24 TIGR01846 type_I_sec_HlyB type 100.0 2.1E-57 4.5E-62 458.3 42.6 361 2-367 228-591 (694)
25 COG4987 CydC ABC-type transpor 100.0 9.8E-58 2.1E-62 419.6 35.5 358 5-367 110-472 (573)
26 KOG0055 Multidrug/pheromone ex 100.0 8.1E-59 1.8E-63 464.7 29.6 365 1-367 119-487 (1228)
27 COG4988 CydD ABC-type transpor 100.0 2E-56 4.3E-61 417.3 40.2 360 4-367 91-454 (559)
28 PRK10789 putative multidrug tr 100.0 4.4E-56 9.4E-61 438.9 41.9 361 2-367 85-449 (569)
29 TIGR02204 MsbA_rel ABC transpo 100.0 5.2E-56 1.1E-60 440.8 42.6 364 2-367 107-474 (576)
30 PRK13657 cyclic beta-1,2-gluca 100.0 5.9E-56 1.3E-60 440.5 42.6 362 2-367 105-469 (588)
31 TIGR01192 chvA glucan exporter 100.0 9E-55 1.9E-59 430.2 42.3 362 2-367 105-469 (585)
32 KOG0056 Heavy metal exporter H 100.0 2E-56 4.3E-61 404.3 23.1 357 2-367 308-672 (790)
33 TIGR01842 type_I_sec_PrtD type 100.0 2.1E-53 4.6E-58 418.2 41.9 353 8-367 96-452 (544)
34 KOG0057 Mitochondrial Fe/S clu 100.0 1.2E-53 2.7E-58 392.8 34.2 359 2-367 123-485 (591)
35 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.7E-52 5.9E-57 410.4 39.3 357 2-362 102-468 (555)
36 PTZ00265 multidrug resistance 100.0 3.5E-52 7.7E-57 442.3 40.6 362 2-367 146-577 (1466)
37 COG5265 ATM1 ABC-type transpor 100.0 3.8E-51 8.2E-56 365.1 26.6 357 3-367 32-397 (497)
38 PLN03232 ABC transporter C fam 100.0 9.1E-49 2E-53 419.7 40.2 346 3-367 391-738 (1495)
39 PLN03130 ABC transporter C fam 100.0 1.2E-48 2.7E-53 419.0 41.0 347 2-367 390-738 (1622)
40 COG4618 ArpD ABC-type protease 100.0 7.2E-49 1.6E-53 358.1 29.8 342 17-367 123-470 (580)
41 PRK10522 multidrug transporter 100.0 2.7E-46 5.8E-51 367.9 38.4 344 2-358 97-443 (547)
42 KOG0054 Multidrug resistance-a 100.0 4.7E-44 1E-48 366.5 39.4 344 6-367 295-641 (1381)
43 TIGR00954 3a01203 Peroxysomal 100.0 3.1E-44 6.7E-49 358.2 36.1 351 2-366 188-580 (659)
44 TIGR00957 MRP_assoc_pro multi 100.0 3.7E-43 8.1E-48 377.1 41.9 348 3-367 408-758 (1522)
45 TIGR01271 CFTR_protein cystic 100.0 5.5E-41 1.2E-45 359.4 40.0 342 3-367 172-546 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 2.7E-39 5.9E-44 346.7 37.8 347 7-367 341-780 (1560)
47 COG4615 PvdE ABC-type sideroph 100.0 1.7E-36 3.7E-41 268.9 30.2 337 4-353 99-438 (546)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.1E-32 8.9E-37 242.8 14.7 136 231-367 1-136 (275)
49 cd03244 ABCC_MRP_domain2 Domai 100.0 9.9E-29 2.1E-33 215.9 15.0 134 232-365 2-135 (221)
50 COG2884 FtsE Predicted ATPase 100.0 2.1E-29 4.6E-34 203.2 9.0 126 233-359 2-138 (223)
51 COG4178 ABC-type uncharacteriz 100.0 3.4E-26 7.4E-31 218.2 32.4 331 14-357 152-508 (604)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 3.1E-28 6.8E-33 217.2 15.7 138 229-366 16-153 (257)
53 COG3839 MalK ABC-type sugar tr 100.0 1.1E-27 2.4E-32 215.4 13.4 124 232-359 3-134 (338)
54 COG1125 OpuBA ABC-type proline 99.9 5.4E-28 1.2E-32 203.8 9.2 125 233-359 2-136 (309)
55 cd03254 ABCC_Glucan_exporter_l 99.9 3E-27 6.5E-32 207.7 13.4 132 232-364 2-134 (229)
56 cd03252 ABCC_Hemolysin The ABC 99.9 3.5E-27 7.7E-32 208.3 13.9 132 233-364 1-133 (237)
57 COG1117 PstB ABC-type phosphat 99.9 1.2E-27 2.6E-32 196.7 9.0 121 231-353 6-140 (253)
58 PRK14257 phosphate ABC transpo 99.9 3.7E-27 8E-32 216.2 13.2 125 227-351 75-214 (329)
59 COG1126 GlnQ ABC-type polar am 99.9 3E-27 6.5E-32 195.2 10.7 126 232-359 2-137 (240)
60 cd03245 ABCC_bacteriocin_expor 99.9 1.1E-26 2.4E-31 202.8 14.7 134 232-365 2-136 (220)
61 cd03253 ABCC_ATM1_transporter 99.9 1E-26 2.2E-31 205.3 14.2 132 233-365 1-133 (236)
62 cd03250 ABCC_MRP_domain1 Domai 99.9 9.5E-27 2.1E-31 200.7 13.5 120 233-365 1-123 (204)
63 cd03251 ABCC_MsbA MsbA is an e 99.9 1.5E-26 3.1E-31 204.0 14.7 133 233-365 1-134 (234)
64 cd03369 ABCC_NFT1 Domain 2 of 99.9 2E-26 4.3E-31 199.2 12.7 116 229-344 3-118 (207)
65 cd03248 ABCC_TAP TAP, the Tran 99.9 4.1E-26 9E-31 200.0 14.2 136 230-365 9-146 (226)
66 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 3.1E-26 6.8E-31 202.4 13.5 132 233-364 1-134 (238)
67 COG3842 PotA ABC-type spermidi 99.9 2.5E-26 5.4E-31 207.8 12.7 124 232-359 5-137 (352)
68 COG1116 TauB ABC-type nitrate/ 99.9 2.6E-26 5.5E-31 195.2 11.6 121 232-359 3-131 (248)
69 TIGR00960 3a0501s02 Type II (G 99.9 1.8E-26 4E-31 200.8 10.9 127 233-359 2-139 (216)
70 cd03290 ABCC_SUR1_N The SUR do 99.9 4.9E-26 1.1E-30 198.3 13.6 131 234-365 2-136 (218)
71 COG1120 FepC ABC-type cobalami 99.9 4.5E-26 9.8E-31 197.4 11.7 121 232-354 2-134 (258)
72 COG1135 AbcC ABC-type metal io 99.9 7.5E-26 1.6E-30 196.4 11.7 127 233-359 2-142 (339)
73 COG1122 CbiO ABC-type cobalt t 99.9 1.3E-25 2.7E-30 194.6 13.0 127 232-359 3-139 (235)
74 COG3638 ABC-type phosphate/pho 99.9 1.1E-25 2.5E-30 188.2 11.4 121 232-353 3-142 (258)
75 PRK13647 cbiO cobalt transport 99.9 9.9E-26 2.2E-30 202.7 12.0 127 232-359 4-139 (274)
76 COG1127 Ttg2A ABC-type transpo 99.9 1.7E-25 3.6E-30 187.7 12.2 125 231-357 7-144 (263)
77 COG1136 SalX ABC-type antimicr 99.9 2.2E-25 4.9E-30 189.4 13.2 126 233-358 2-142 (226)
78 PRK13650 cbiO cobalt transport 99.9 1.6E-25 3.4E-30 201.9 12.4 128 232-359 4-141 (279)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.7E-25 3.7E-30 195.1 11.6 126 233-358 1-140 (218)
80 cd03261 ABC_Org_Solvent_Resist 99.9 1.7E-25 3.8E-30 197.1 11.7 124 233-358 1-136 (235)
81 PRK13635 cbiO cobalt transport 99.9 2.6E-25 5.7E-30 200.4 12.6 128 232-359 5-141 (279)
82 TIGR02314 ABC_MetN D-methionin 99.9 1.9E-25 4E-30 205.4 11.7 127 233-359 2-141 (343)
83 PRK11629 lolD lipoprotein tran 99.9 2.6E-25 5.6E-30 195.8 11.8 127 232-358 5-145 (233)
84 PRK13631 cbiO cobalt transport 99.9 5.1E-25 1.1E-29 201.5 14.1 126 231-356 20-174 (320)
85 COG3840 ThiQ ABC-type thiamine 99.9 2.4E-25 5.3E-30 178.4 9.8 121 233-359 2-130 (231)
86 cd03226 ABC_cobalt_CbiO_domain 99.9 3.1E-25 6.8E-30 191.4 11.2 122 234-359 1-127 (205)
87 cd03292 ABC_FtsE_transporter F 99.9 3E-25 6.5E-30 192.9 11.1 126 233-359 1-137 (214)
88 cd03266 ABC_NatA_sodium_export 99.9 3.4E-25 7.3E-30 193.2 11.0 124 233-357 2-135 (218)
89 TIGR02673 FtsE cell division A 99.9 3.4E-25 7.3E-30 192.6 10.8 125 233-358 2-137 (214)
90 PRK14250 phosphate ABC transpo 99.9 9.7E-25 2.1E-29 192.9 13.7 124 232-357 3-130 (241)
91 cd03260 ABC_PstB_phosphate_tra 99.9 5.3E-25 1.1E-29 193.1 11.8 121 233-355 1-136 (227)
92 COG4619 ABC-type uncharacteriz 99.9 2.8E-25 6E-30 175.8 8.8 112 242-353 11-127 (223)
93 cd03263 ABC_subfamily_A The AB 99.9 4.1E-25 8.9E-30 192.9 10.8 123 233-356 1-131 (220)
94 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 5.5E-25 1.2E-29 189.7 11.3 118 232-354 4-135 (254)
95 PRK13637 cbiO cobalt transport 99.9 6.1E-25 1.3E-29 198.8 12.1 126 232-357 2-143 (287)
96 PRK11650 ugpC glycerol-3-phosp 99.9 7.9E-25 1.7E-29 202.8 13.1 125 232-359 3-135 (356)
97 PRK13643 cbiO cobalt transport 99.9 6.6E-25 1.4E-29 198.7 12.1 126 233-358 2-144 (288)
98 cd03225 ABC_cobalt_CbiO_domain 99.9 5.2E-25 1.1E-29 191.0 11.0 125 234-358 1-134 (211)
99 PRK13632 cbiO cobalt transport 99.9 7.5E-25 1.6E-29 196.9 12.3 128 232-359 7-143 (271)
100 TIGR02315 ABC_phnC phosphonate 99.9 1E-24 2.2E-29 193.4 12.2 124 233-357 2-144 (243)
101 PRK11153 metN DL-methionine tr 99.9 6.7E-25 1.4E-29 203.0 11.4 126 233-358 2-140 (343)
102 PRK10908 cell division protein 99.9 9.1E-25 2E-29 190.9 11.7 125 233-358 2-137 (222)
103 PRK10247 putative ABC transpor 99.9 1.9E-24 4E-29 189.1 13.3 117 232-350 7-128 (225)
104 cd03256 ABC_PhnC_transporter A 99.9 1E-24 2.2E-29 193.2 11.8 124 233-357 1-143 (241)
105 PRK13640 cbiO cobalt transport 99.9 1.5E-24 3.2E-29 195.9 13.0 128 232-359 5-144 (282)
106 PRK13646 cbiO cobalt transport 99.9 1.1E-24 2.3E-29 197.2 12.1 126 232-357 2-144 (286)
107 cd03262 ABC_HisP_GlnQ_permease 99.9 8.3E-25 1.8E-29 190.0 10.8 124 233-358 1-135 (213)
108 cd03258 ABC_MetN_methionine_tr 99.9 9.7E-25 2.1E-29 192.2 11.3 127 233-359 2-141 (233)
109 cd03259 ABC_Carb_Solutes_like 99.9 8.1E-25 1.8E-29 190.0 10.7 122 233-358 1-130 (213)
110 cd03268 ABC_BcrA_bacitracin_re 99.9 1.1E-24 2.4E-29 188.5 11.3 121 233-357 1-125 (208)
111 TIGR02211 LolD_lipo_ex lipopro 99.9 1.4E-24 3E-29 189.7 11.6 126 233-358 2-141 (221)
112 PRK13652 cbiO cobalt transport 99.9 2.1E-24 4.5E-29 194.6 12.9 126 233-359 4-138 (277)
113 PRK10584 putative ABC transpor 99.9 2.1E-24 4.6E-29 189.4 12.6 128 232-359 6-147 (228)
114 cd03246 ABCC_Protease_Secretio 99.9 1.9E-24 4.1E-29 181.3 11.6 96 233-328 1-96 (173)
115 PRK14269 phosphate ABC transpo 99.9 1.9E-24 4.2E-29 191.7 12.3 120 232-353 2-133 (246)
116 PRK10575 iron-hydroxamate tran 99.9 1.5E-24 3.3E-29 194.3 11.8 126 232-359 11-148 (265)
117 cd03264 ABC_drug_resistance_li 99.9 1E-24 2.2E-29 189.2 10.2 121 233-357 1-129 (211)
118 cd03291 ABCC_CFTR1 The CFTR su 99.9 7.7E-24 1.7E-28 190.2 15.9 119 230-365 37-155 (282)
119 PRK13644 cbiO cobalt transport 99.9 2.6E-24 5.6E-29 193.6 12.8 125 233-358 2-136 (274)
120 PRK13634 cbiO cobalt transport 99.9 2.1E-24 4.5E-29 195.6 12.2 125 232-356 2-143 (290)
121 PRK11432 fbpC ferric transport 99.9 2.2E-24 4.8E-29 199.3 12.4 124 232-359 6-137 (351)
122 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.6E-24 3.4E-29 191.9 10.8 123 233-356 1-133 (242)
123 TIGR02982 heterocyst_DevA ABC 99.9 1.4E-24 3.1E-29 189.3 10.4 127 233-359 2-142 (220)
124 cd03296 ABC_CysA_sulfate_impor 99.9 3.2E-24 6.8E-29 189.6 12.6 123 232-358 2-136 (239)
125 cd03219 ABC_Mj1267_LivG_branch 99.9 1.5E-24 3.3E-29 191.4 10.5 122 233-356 1-141 (236)
126 PRK13636 cbiO cobalt transport 99.9 2.9E-24 6.3E-29 194.1 12.6 125 232-357 5-140 (283)
127 PRK13651 cobalt transporter AT 99.9 3.1E-24 6.8E-29 195.2 12.8 127 232-358 2-165 (305)
128 PRK13648 cbiO cobalt transport 99.9 3.4E-24 7.3E-29 192.5 12.6 127 232-358 7-142 (269)
129 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.8E-24 3.9E-29 188.8 10.5 122 233-359 1-132 (220)
130 TIGR03265 PhnT2 putative 2-ami 99.9 2.3E-24 5E-29 199.5 11.7 124 232-359 4-135 (353)
131 PRK11231 fecE iron-dicitrate t 99.9 2.9E-24 6.3E-29 191.6 11.9 123 233-357 3-137 (255)
132 PRK13642 cbiO cobalt transport 99.9 4E-24 8.7E-29 192.7 12.7 128 232-359 4-141 (277)
133 KOG0060 Long-chain acyl-CoA tr 99.9 1.7E-22 3.6E-27 188.2 23.5 337 14-363 186-563 (659)
134 cd03231 ABC_CcmA_heme_exporter 99.9 5.1E-24 1.1E-28 183.1 12.6 121 233-356 1-123 (201)
135 PRK13548 hmuV hemin importer A 99.9 6.3E-24 1.4E-28 189.5 13.6 124 233-358 3-134 (258)
136 cd03301 ABC_MalK_N The N-termi 99.9 2.3E-24 4.9E-29 187.2 10.4 122 233-358 1-130 (213)
137 TIGR00972 3a0107s01c2 phosphat 99.9 4.3E-24 9.2E-29 189.7 12.3 115 233-349 2-131 (247)
138 cd03224 ABC_TM1139_LivF_branch 99.9 3.2E-24 6.8E-29 187.6 11.2 97 233-331 1-99 (222)
139 PRK13540 cytochrome c biogenes 99.9 5.8E-24 1.2E-28 182.7 12.6 119 233-354 2-123 (200)
140 cd03235 ABC_Metallic_Cations A 99.9 2E-24 4.3E-29 187.6 9.7 118 234-358 1-132 (213)
141 cd03298 ABC_ThiQ_thiamine_tran 99.9 5.4E-24 1.2E-28 184.6 12.3 121 233-359 1-129 (211)
142 PRK11247 ssuB aliphatic sulfon 99.9 7.3E-24 1.6E-28 188.3 13.3 120 232-358 12-133 (257)
143 PRK09536 btuD corrinoid ABC tr 99.9 4.6E-24 1E-28 199.6 12.4 124 232-357 3-138 (402)
144 cd03247 ABCC_cytochrome_bd The 99.9 3E-24 6.4E-29 181.0 10.1 95 233-328 1-95 (178)
145 TIGR03005 ectoine_ehuA ectoine 99.9 4E-24 8.8E-29 190.4 11.5 125 233-359 1-147 (252)
146 PRK09452 potA putrescine/sperm 99.9 6E-24 1.3E-28 197.7 12.7 124 232-359 14-145 (375)
147 PRK11124 artP arginine transpo 99.9 5.6E-24 1.2E-28 188.4 11.8 126 232-359 2-142 (242)
148 PRK13633 cobalt transporter AT 99.9 8.7E-24 1.9E-28 190.8 13.0 128 232-359 4-145 (280)
149 TIGR03258 PhnT 2-aminoethylpho 99.9 5.5E-24 1.2E-28 197.3 11.8 126 230-359 3-138 (362)
150 PRK10851 sulfate/thiosulfate t 99.9 8.5E-24 1.8E-28 195.7 13.0 124 232-359 2-137 (353)
151 cd03265 ABC_DrrA DrrA is the A 99.9 7.2E-24 1.6E-28 185.0 11.7 122 233-357 1-130 (220)
152 PRK11000 maltose/maltodextrin 99.9 6.8E-24 1.5E-28 197.9 12.2 124 232-359 3-134 (369)
153 PRK13649 cbiO cobalt transport 99.9 6.7E-24 1.5E-28 191.8 11.6 124 232-355 2-142 (280)
154 TIGR01277 thiQ thiamine ABC tr 99.9 7.6E-24 1.6E-28 183.8 11.4 121 233-359 1-129 (213)
155 cd03269 ABC_putative_ATPase Th 99.9 3.8E-24 8.3E-29 185.4 9.4 119 233-357 1-127 (210)
156 TIGR03873 F420-0_ABC_ATP propo 99.9 8.6E-24 1.9E-28 188.7 11.9 123 233-357 2-136 (256)
157 PRK10253 iron-enterobactin tra 99.9 8E-24 1.7E-28 189.7 11.7 126 231-358 6-143 (265)
158 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3E-24 6.6E-29 192.7 8.9 124 234-359 26-161 (269)
159 TIGR01189 ccmA heme ABC export 99.9 6.2E-24 1.4E-28 182.2 10.5 122 233-357 1-126 (198)
160 PRK10744 pstB phosphate transp 99.9 1.6E-23 3.4E-28 187.4 13.5 120 230-351 11-145 (260)
161 PRK14273 phosphate ABC transpo 99.9 1E-23 2.2E-28 188.1 12.2 118 232-351 7-139 (254)
162 PRK09493 glnQ glutamine ABC tr 99.9 9.1E-24 2E-28 186.8 11.7 124 233-358 2-136 (240)
163 PRK14259 phosphate ABC transpo 99.9 1.6E-23 3.4E-28 188.0 13.2 118 231-350 12-142 (269)
164 cd03218 ABC_YhbG The ABC trans 99.9 7.2E-24 1.6E-28 186.6 10.7 123 233-357 1-132 (232)
165 PRK13639 cbiO cobalt transport 99.9 9.5E-24 2.1E-28 190.1 11.2 124 233-357 2-136 (275)
166 PRK11607 potG putrescine trans 99.9 1.2E-23 2.7E-28 195.9 12.2 125 231-359 18-150 (377)
167 cd03228 ABCC_MRP_Like The MRP 99.9 1.2E-23 2.6E-28 176.1 10.8 96 233-328 1-96 (171)
168 TIGR03608 L_ocin_972_ABC putat 99.9 7.1E-24 1.5E-28 183.2 9.5 121 235-357 1-133 (206)
169 PRK10895 lipopolysaccharide AB 99.9 2.3E-23 4.9E-28 184.4 12.9 121 232-354 3-133 (241)
170 PRK14242 phosphate transporter 99.9 1.3E-23 2.9E-28 187.3 11.4 119 232-352 6-139 (253)
171 PRK13538 cytochrome c biogenes 99.9 1.4E-23 3.1E-28 180.8 11.2 122 233-357 2-128 (204)
172 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.3E-23 2.7E-28 185.4 11.1 119 233-354 2-128 (236)
173 TIGR03411 urea_trans_UrtD urea 99.9 1.9E-23 4.2E-28 185.0 11.8 122 233-356 3-141 (242)
174 TIGR01186 proV glycine betaine 99.9 7.3E-24 1.6E-28 195.9 9.5 113 247-359 6-130 (363)
175 PRK11831 putative ABC transpor 99.9 1.7E-23 3.6E-28 188.0 11.5 124 232-357 7-142 (269)
176 PRK14235 phosphate transporter 99.9 2.5E-23 5.4E-28 186.6 12.6 121 230-352 17-153 (267)
177 PRK14247 phosphate ABC transpo 99.9 2E-23 4.3E-28 185.8 11.8 119 232-352 3-136 (250)
178 PRK14237 phosphate transporter 99.9 2.6E-23 5.6E-28 186.5 12.6 120 231-352 19-153 (267)
179 PRK10771 thiQ thiamine transpo 99.9 4.7E-23 1E-27 181.2 13.7 121 233-359 2-130 (232)
180 TIGR03410 urea_trans_UrtE urea 99.9 2E-23 4.3E-28 183.5 11.2 96 233-330 1-98 (230)
181 cd03300 ABC_PotA_N PotA is an 99.9 1.2E-23 2.6E-28 185.0 9.8 123 233-359 1-131 (232)
182 TIGR02769 nickel_nikE nickel i 99.9 3.2E-23 7E-28 185.8 12.7 122 233-354 3-146 (265)
183 PRK13641 cbiO cobalt transport 99.9 2.5E-23 5.3E-28 188.5 12.0 126 232-357 2-144 (287)
184 PRK13645 cbiO cobalt transport 99.9 2.8E-23 6.2E-28 188.4 12.4 125 230-354 4-146 (289)
185 cd03257 ABC_NikE_OppD_transpor 99.9 4.8E-23 1E-27 180.9 13.4 125 233-357 2-144 (228)
186 PRK11300 livG leucine/isoleuci 99.9 2.9E-23 6.3E-28 185.3 12.2 123 232-356 5-151 (255)
187 TIGR00968 3a0106s01 sulfate AB 99.9 2.9E-23 6.3E-28 183.1 11.8 121 233-357 1-129 (237)
188 PRK13638 cbiO cobalt transport 99.9 2.4E-23 5.2E-28 187.2 11.4 122 233-356 2-134 (271)
189 PRK13547 hmuV hemin importer A 99.9 4.9E-23 1.1E-27 184.6 13.1 121 233-355 2-142 (272)
190 PRK10619 histidine/lysine/argi 99.9 3.4E-23 7.3E-28 185.0 12.0 120 231-352 4-145 (257)
191 cd03229 ABC_Class3 This class 99.9 3.4E-23 7.3E-28 174.5 11.3 95 233-329 1-98 (178)
192 PRK13537 nodulation ABC transp 99.9 2.3E-23 4.9E-28 189.9 11.0 122 231-355 6-135 (306)
193 cd03230 ABC_DR_subfamily_A Thi 99.9 3.2E-23 6.9E-28 173.8 10.7 94 233-329 1-95 (173)
194 PRK14267 phosphate ABC transpo 99.9 2.8E-23 6E-28 185.2 11.0 119 232-352 4-139 (253)
195 cd03233 ABC_PDR_domain1 The pl 99.9 2.9E-23 6.3E-28 178.4 10.4 98 232-330 3-106 (202)
196 PRK14251 phosphate ABC transpo 99.9 3.2E-23 7E-28 184.5 11.1 116 232-349 4-134 (251)
197 PRK11264 putative amino-acid A 99.9 3.4E-23 7.5E-28 184.3 11.2 122 233-356 4-142 (250)
198 PRK13539 cytochrome c biogenes 99.9 6.1E-23 1.3E-27 177.2 12.3 117 233-354 3-123 (207)
199 PRK11248 tauB taurine transpor 99.9 4.3E-23 9.4E-28 183.6 11.5 119 233-358 2-128 (255)
200 PRK11614 livF leucine/isoleuci 99.9 5.9E-23 1.3E-27 181.3 12.3 98 232-331 5-104 (237)
201 TIGR03522 GldA_ABC_ATP gliding 99.9 3.5E-23 7.6E-28 188.6 11.0 123 232-357 2-132 (301)
202 PRK14260 phosphate ABC transpo 99.9 3.8E-23 8.2E-28 184.8 10.7 120 232-353 7-141 (259)
203 TIGR01288 nodI ATP-binding ABC 99.9 4.5E-23 9.7E-28 188.2 11.4 122 232-356 4-133 (303)
204 PRK14274 phosphate ABC transpo 99.9 7.5E-23 1.6E-27 182.9 12.6 119 232-352 12-145 (259)
205 PRK14249 phosphate ABC transpo 99.9 7E-23 1.5E-27 182.3 12.0 119 232-352 4-137 (251)
206 cd03234 ABCG_White The White s 99.9 4.3E-23 9.4E-28 180.8 10.4 95 233-330 4-104 (226)
207 PRK14248 phosphate ABC transpo 99.9 9E-23 2E-27 183.3 12.7 117 232-350 21-152 (268)
208 PRK14240 phosphate transporter 99.9 6.4E-23 1.4E-27 182.5 11.6 119 232-352 3-136 (250)
209 PRK10070 glycine betaine trans 99.9 5.2E-23 1.1E-27 192.4 11.4 125 233-359 29-165 (400)
210 PRK14261 phosphate ABC transpo 99.9 7.4E-23 1.6E-27 182.4 11.6 119 232-352 6-139 (253)
211 PRK15079 oligopeptide ABC tran 99.9 9.3E-23 2E-27 187.3 12.5 126 232-357 8-160 (331)
212 PRK14266 phosphate ABC transpo 99.9 6.9E-23 1.5E-27 182.3 11.3 120 232-353 3-137 (250)
213 PRK14254 phosphate ABC transpo 99.9 1.1E-22 2.4E-27 183.8 12.6 119 231-351 38-169 (285)
214 PRK14236 phosphate transporter 99.9 9.6E-23 2.1E-27 183.3 12.0 121 230-352 23-158 (272)
215 PRK09984 phosphonate/organopho 99.9 1.1E-22 2.3E-27 182.3 12.0 125 232-358 4-152 (262)
216 PRK14253 phosphate ABC transpo 99.9 7.9E-23 1.7E-27 181.8 11.1 119 232-352 3-135 (249)
217 PRK14243 phosphate transporter 99.9 1.1E-22 2.4E-27 182.1 12.2 120 232-353 10-142 (264)
218 PRK14270 phosphate ABC transpo 99.9 9.9E-23 2.1E-27 181.4 11.7 119 232-352 4-137 (251)
219 PRK14252 phosphate ABC transpo 99.9 1.1E-22 2.3E-27 182.5 11.9 122 229-352 13-151 (265)
220 PRK14238 phosphate transporter 99.9 1.5E-22 3.2E-27 182.0 12.7 98 231-330 23-127 (271)
221 PRK14268 phosphate ABC transpo 99.9 8.6E-23 1.9E-27 182.4 11.2 117 232-350 12-142 (258)
222 PRK13543 cytochrome c biogenes 99.9 1.4E-22 3.1E-27 175.9 12.2 119 232-355 11-134 (214)
223 TIGR01166 cbiO cobalt transpor 99.9 5.9E-23 1.3E-27 175.1 9.6 112 247-358 5-127 (190)
224 PRK14239 phosphate transporter 99.9 7.6E-23 1.6E-27 182.3 10.7 119 232-352 5-138 (252)
225 COG1118 CysA ABC-type sulfate/ 99.9 4.9E-23 1.1E-27 178.6 9.0 124 232-359 2-138 (345)
226 cd03299 ABC_ModC_like Archeal 99.9 9.6E-23 2.1E-27 179.5 10.9 122 233-359 1-130 (235)
227 PRK14262 phosphate ABC transpo 99.9 8.7E-23 1.9E-27 181.7 10.6 119 232-352 3-136 (250)
228 PRK13536 nodulation factor exp 99.9 9.2E-23 2E-27 187.9 10.7 120 232-354 41-168 (340)
229 PRK14256 phosphate ABC transpo 99.9 1.7E-22 3.7E-27 180.0 12.0 120 231-352 3-138 (252)
230 COG1124 DppF ABC-type dipeptid 99.9 2E-22 4.4E-27 169.9 11.7 128 232-359 3-142 (252)
231 PRK14264 phosphate ABC transpo 99.9 2.6E-22 5.6E-27 183.2 13.3 120 231-352 44-190 (305)
232 PRK14244 phosphate ABC transpo 99.9 8.5E-23 1.8E-27 181.8 9.7 117 233-351 6-138 (251)
233 TIGR01978 sufC FeS assembly AT 99.9 1.4E-22 3.1E-27 179.7 10.6 116 233-350 1-134 (243)
234 PRK14271 phosphate ABC transpo 99.9 3.7E-22 8.1E-27 179.6 13.5 118 232-351 21-152 (276)
235 PRK14245 phosphate ABC transpo 99.9 1.3E-22 2.8E-27 180.5 10.3 119 232-352 3-136 (250)
236 TIGR03740 galliderm_ABC gallid 99.9 2.3E-22 5E-27 175.8 11.7 119 233-357 1-123 (223)
237 PRK13541 cytochrome c biogenes 99.9 1.7E-22 3.6E-27 172.9 10.5 118 233-357 2-122 (195)
238 PRK14241 phosphate transporter 99.9 2.1E-22 4.6E-27 179.9 11.5 117 232-350 4-136 (258)
239 PRK14258 phosphate ABC transpo 99.9 2.1E-22 4.6E-27 180.1 11.2 121 231-353 6-141 (261)
240 COG1131 CcmA ABC-type multidru 99.9 2.2E-22 4.8E-27 181.7 11.4 118 232-351 4-129 (293)
241 PRK11144 modC molybdate transp 99.9 3.1E-22 6.8E-27 185.9 12.6 122 233-359 2-129 (352)
242 PRK15112 antimicrobial peptide 99.9 3E-22 6.6E-27 179.6 11.9 125 232-356 4-147 (267)
243 PRK14265 phosphate ABC transpo 99.9 5E-22 1.1E-26 178.7 13.1 121 231-353 19-152 (274)
244 PRK15056 manganese/iron transp 99.9 3.8E-22 8.2E-27 179.5 12.3 122 232-357 6-141 (272)
245 PRK11308 dppF dipeptide transp 99.9 5E-22 1.1E-26 182.4 13.1 126 232-357 5-153 (327)
246 PRK14275 phosphate ABC transpo 99.9 2.5E-22 5.4E-27 181.7 10.7 118 231-350 38-170 (286)
247 cd03223 ABCD_peroxisomal_ALDP 99.9 2.4E-22 5.2E-27 167.1 9.7 86 233-330 1-86 (166)
248 PRK09544 znuC high-affinity zi 99.9 5.5E-22 1.2E-26 175.9 12.6 114 232-358 4-120 (251)
249 PRK14263 phosphate ABC transpo 99.9 3.7E-22 7.9E-27 178.3 11.5 120 232-353 8-140 (261)
250 cd03213 ABCG_EPDR ABCG transpo 99.9 3.7E-22 8.1E-27 170.4 10.6 96 232-330 3-105 (194)
251 PRK14272 phosphate ABC transpo 99.9 3.9E-22 8.4E-27 177.7 10.6 97 232-330 4-108 (252)
252 PRK14255 phosphate ABC transpo 99.9 3.2E-22 7E-27 178.2 9.7 119 232-352 5-138 (252)
253 cd03232 ABC_PDR_domain2 The pl 99.9 5.8E-22 1.3E-26 169.0 10.3 95 232-330 3-102 (192)
254 TIGR02324 CP_lyasePhnL phospho 99.9 1.1E-21 2.3E-26 171.7 11.7 120 233-352 2-142 (224)
255 COG4181 Predicted ABC-type tra 99.9 6.9E-22 1.5E-26 157.1 9.3 128 232-359 6-147 (228)
256 TIGR03415 ABC_choXWV_ATP choli 99.9 5.3E-22 1.1E-26 184.4 9.7 119 238-358 30-164 (382)
257 PRK14246 phosphate ABC transpo 99.9 1.6E-21 3.4E-26 173.8 12.3 118 231-350 9-141 (257)
258 PRK15439 autoinducer 2 ABC tra 99.9 2E-21 4.3E-26 189.8 14.0 123 232-356 11-138 (510)
259 PRK10419 nikE nickel transport 99.9 1.9E-21 4.1E-26 174.5 12.5 123 232-354 3-147 (268)
260 TIGR02142 modC_ABC molybdenum 99.9 1.1E-21 2.4E-26 182.4 11.4 119 237-359 4-132 (354)
261 COG0411 LivG ABC-type branched 99.9 1.6E-22 3.6E-27 170.7 5.2 120 233-354 5-145 (250)
262 TIGR01188 drrA daunorubicin re 99.9 7E-22 1.5E-26 180.3 9.6 110 247-357 6-123 (302)
263 cd03215 ABC_Carb_Monos_II This 99.9 1.3E-21 2.7E-26 165.5 10.5 93 232-330 4-101 (182)
264 COG0410 LivF ABC-type branched 99.9 1.2E-21 2.6E-26 164.1 9.7 98 232-331 3-102 (237)
265 PRK10418 nikD nickel transport 99.9 2.2E-21 4.9E-26 172.8 12.2 114 232-350 4-129 (254)
266 cd03297 ABC_ModC_molybdenum_tr 99.9 1.4E-21 3E-26 169.8 10.5 118 234-357 3-130 (214)
267 PRK11022 dppD dipeptide transp 99.9 2.9E-21 6.2E-26 177.4 13.0 118 233-350 4-142 (326)
268 PF00005 ABC_tran: ABC transpo 99.9 6.5E-22 1.4E-26 159.6 7.6 99 250-354 1-100 (137)
269 PRK13549 xylose transporter AT 99.9 2.3E-21 5E-26 189.4 12.4 121 232-354 5-139 (506)
270 PRK11288 araG L-arabinose tran 99.9 2.4E-21 5.1E-26 189.1 12.4 120 232-353 4-135 (501)
271 PRK10535 macrolide transporter 99.9 2.2E-21 4.7E-26 194.1 12.4 128 232-359 4-145 (648)
272 PRK10762 D-ribose transporter 99.9 2.6E-21 5.7E-26 188.8 12.4 120 232-353 4-136 (501)
273 PRK09700 D-allose transporter 99.9 2E-21 4.4E-26 190.1 11.6 121 232-354 5-141 (510)
274 PRK11701 phnK phosphonate C-P 99.9 3E-21 6.4E-26 172.5 11.6 123 232-356 6-149 (258)
275 COG4559 ABC-type hemin transpo 99.9 2.4E-21 5.3E-26 159.4 10.0 120 233-354 2-131 (259)
276 PRK09473 oppD oligopeptide tra 99.9 3.9E-21 8.4E-26 176.7 12.0 119 232-350 12-150 (330)
277 PRK15093 antimicrobial peptide 99.9 3.6E-21 7.8E-26 177.3 11.7 125 233-357 4-157 (330)
278 CHL00131 ycf16 sulfate ABC tra 99.8 5.7E-21 1.2E-25 170.2 11.7 123 232-356 7-148 (252)
279 cd03217 ABC_FeS_Assembly ABC-t 99.8 4.3E-21 9.3E-26 164.7 10.1 94 233-328 1-98 (200)
280 PRK03695 vitamin B12-transport 99.8 5E-21 1.1E-25 169.9 10.7 118 234-358 2-126 (248)
281 cd03214 ABC_Iron-Siderophores_ 99.8 4.5E-21 9.8E-26 161.8 9.6 80 234-315 1-80 (180)
282 COG1137 YhbG ABC-type (unclass 99.8 1.5E-22 3.4E-27 164.9 0.2 121 232-354 4-135 (243)
283 TIGR02323 CP_lyasePhnK phospho 99.8 1.4E-20 2.9E-25 167.9 12.2 121 232-354 3-144 (253)
284 cd03267 ABC_NatA_like Similar 99.8 6.2E-21 1.3E-25 168.0 9.4 107 247-354 34-149 (236)
285 COG1129 MglA ABC-type sugar tr 99.8 1.4E-20 3.1E-25 176.5 12.1 99 232-332 8-108 (500)
286 PRK10938 putative molybdenum t 99.8 1.3E-20 2.7E-25 183.7 12.2 123 233-358 4-135 (490)
287 COG3845 ABC-type uncharacteriz 99.8 1.4E-20 3.1E-25 173.1 10.8 115 232-348 4-130 (501)
288 PRK10261 glutathione transport 99.8 1.8E-20 4E-25 186.8 12.3 128 232-359 313-464 (623)
289 PRK10982 galactose/methyl gala 99.8 1.5E-20 3.2E-25 183.2 11.3 116 235-352 1-128 (491)
290 TIGR02633 xylG D-xylose ABC tr 99.8 2.3E-20 5E-25 182.3 12.2 116 233-350 2-132 (500)
291 cd03216 ABC_Carb_Monos_I This 99.8 2.5E-20 5.4E-25 154.5 10.4 81 233-315 1-82 (163)
292 COG4604 CeuD ABC-type enteroch 99.8 8.9E-21 1.9E-25 154.3 7.1 124 233-358 2-139 (252)
293 PRK09580 sufC cysteine desulfu 99.8 6E-20 1.3E-24 163.3 12.7 88 233-322 2-92 (248)
294 COG4525 TauB ABC-type taurine 99.8 2E-20 4.3E-25 152.0 8.1 116 233-353 4-127 (259)
295 COG4136 ABC-type uncharacteriz 99.8 5.5E-20 1.2E-24 143.1 9.9 124 232-359 2-135 (213)
296 PRK15134 microcin C ABC transp 99.8 4.1E-20 8.8E-25 181.7 10.4 125 232-357 275-424 (529)
297 TIGR01257 rim_protein retinal- 99.8 6.7E-20 1.5E-24 197.5 12.9 127 231-358 927-1061(2272)
298 TIGR03269 met_CoM_red_A2 methy 99.8 4.3E-20 9.2E-25 181.2 10.3 119 232-350 279-414 (520)
299 TIGR01184 ntrCD nitrate transp 99.8 6.6E-20 1.4E-24 160.9 10.4 103 250-357 1-113 (230)
300 COG4175 ProV ABC-type proline/ 99.8 4.4E-20 9.6E-25 160.6 8.5 111 249-359 43-165 (386)
301 PRK09700 D-allose transporter 99.8 4.9E-20 1.1E-24 180.4 9.9 121 232-356 265-407 (510)
302 KOG0064 Peroxisomal long-chain 99.8 3.9E-17 8.5E-22 150.9 27.0 335 14-361 221-605 (728)
303 PRK15134 microcin C ABC transp 99.8 1.4E-19 3.1E-24 177.8 11.7 119 232-350 5-145 (529)
304 cd00820 PEPCK_HprK Phosphoenol 99.8 4.2E-20 9.1E-25 138.8 5.7 75 248-330 3-77 (107)
305 PRK10261 glutathione transport 99.8 2.2E-19 4.7E-24 179.2 12.4 118 232-349 12-156 (623)
306 PRK13549 xylose transporter AT 99.8 1.1E-19 2.5E-24 177.5 10.2 118 232-349 259-395 (506)
307 cd03236 ABC_RNaseL_inhibitor_d 99.8 6E-20 1.3E-24 162.9 6.8 118 236-357 4-138 (255)
308 PLN03211 ABC transporter G-25; 99.8 5E-19 1.1E-23 176.5 13.8 80 247-330 81-163 (659)
309 TIGR01257 rim_protein retinal- 99.8 2.4E-19 5.1E-24 193.3 12.0 128 231-359 1936-2071(2272)
310 TIGR00956 3a01205 Pleiotropic 99.8 3.2E-19 7E-24 190.9 12.9 118 232-353 759-892 (1394)
311 PRK11819 putative ABC transpor 99.8 2.3E-19 5E-24 177.0 11.0 87 232-330 6-93 (556)
312 TIGR03269 met_CoM_red_A2 methy 99.8 1.7E-19 3.8E-24 176.9 9.6 124 233-358 1-168 (520)
313 TIGR02633 xylG D-xylose ABC tr 99.8 1.9E-19 4.1E-24 175.9 9.9 118 232-349 257-393 (500)
314 TIGR00955 3a01204 The Eye Pigm 99.8 6.3E-20 1.4E-24 182.8 5.9 110 246-365 37-160 (617)
315 COG4555 NatA ABC-type Na+ tran 99.8 1.2E-19 2.6E-24 148.3 6.3 120 233-354 2-129 (245)
316 COG1123 ATPase components of v 99.8 8E-19 1.7E-23 165.9 11.5 128 232-359 280-430 (539)
317 TIGR02770 nickel_nikD nickel i 99.8 3.8E-19 8.2E-24 156.2 7.9 99 249-349 1-113 (230)
318 PRK10938 putative molybdenum t 99.8 5.1E-19 1.1E-23 172.5 9.5 123 232-356 260-399 (490)
319 PRK15064 ABC transporter ATP-b 99.8 8.8E-19 1.9E-23 172.2 10.9 85 233-330 2-87 (530)
320 COG0444 DppD ABC-type dipeptid 99.8 2.1E-18 4.6E-23 152.1 11.6 127 233-359 2-154 (316)
321 PRK15064 ABC transporter ATP-b 99.8 1.5E-18 3.3E-23 170.6 11.9 113 232-357 319-437 (530)
322 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 8.5E-19 1.8E-23 153.1 8.7 111 233-356 23-140 (224)
323 COG4608 AppF ABC-type oligopep 99.8 1.6E-18 3.5E-23 149.6 10.0 99 232-359 4-110 (268)
324 TIGR03771 anch_rpt_ABC anchore 99.8 6.8E-19 1.5E-23 153.7 7.7 99 255-358 1-113 (223)
325 PRK10762 D-ribose transporter 99.8 1.1E-18 2.4E-23 170.4 9.8 111 232-349 257-385 (501)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1E-18 2.3E-23 172.4 9.7 87 232-330 4-91 (552)
327 PRK11288 araG L-arabinose tran 99.8 1.8E-18 3.9E-23 168.9 10.0 111 232-348 257-385 (501)
328 cd03237 ABC_RNaseL_inhibitor_d 99.8 1.4E-18 3.1E-23 153.5 8.4 105 240-357 1-114 (246)
329 COG4148 ModC ABC-type molybdat 99.8 2.1E-18 4.5E-23 147.8 8.9 109 251-359 15-129 (352)
330 COG1123 ATPase components of v 99.8 3.4E-18 7.4E-23 161.7 10.6 127 232-358 5-154 (539)
331 PF00664 ABC_membrane: ABC tra 99.8 1.6E-16 3.6E-21 142.0 21.0 182 2-183 90-274 (275)
332 COG4133 CcmA ABC-type transpor 99.8 1.6E-18 3.4E-23 140.4 7.0 117 234-353 4-125 (209)
333 PRK13546 teichoic acids export 99.8 4.8E-18 1E-22 151.6 10.8 98 247-357 37-142 (264)
334 COG1101 PhnK ABC-type uncharac 99.7 1E-18 2.2E-23 144.3 5.4 87 244-330 16-105 (263)
335 cd00267 ABC_ATPase ABC (ATP-bi 99.7 5.8E-18 1.3E-22 139.7 10.0 79 235-315 2-80 (157)
336 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 5.1E-18 1.1E-22 137.6 9.0 70 233-315 1-70 (144)
337 COG4167 SapF ABC-type antimicr 99.7 2.8E-18 6E-23 138.1 7.1 105 247-351 26-141 (267)
338 PRK11819 putative ABC transpor 99.7 9.1E-18 2E-22 165.7 11.9 106 232-350 324-436 (556)
339 COG1119 ModF ABC-type molybden 99.7 6.9E-18 1.5E-22 142.8 9.4 121 231-353 30-166 (257)
340 PRK13545 tagH teichoic acids e 99.7 1.4E-17 3E-22 158.2 12.6 115 232-359 21-144 (549)
341 PRK15439 autoinducer 2 ABC tra 99.7 6.1E-18 1.3E-22 165.3 9.4 111 232-349 268-393 (510)
342 COG1134 TagH ABC-type polysacc 99.7 5.2E-18 1.1E-22 143.7 7.6 97 247-354 40-143 (249)
343 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.5E-17 3.3E-22 164.1 11.8 106 232-350 322-434 (552)
344 PRK11147 ABC transporter ATPas 99.7 2.2E-17 4.8E-22 165.2 11.5 105 232-349 319-430 (635)
345 PRK10982 galactose/methyl gala 99.7 1.3E-17 2.9E-22 162.5 9.5 92 232-327 250-346 (491)
346 PLN03073 ABC transporter F fam 99.7 3E-17 6.6E-22 164.7 12.0 113 231-356 507-625 (718)
347 COG4172 ABC-type uncharacteriz 99.7 7E-17 1.5E-21 145.0 12.4 126 231-357 275-425 (534)
348 COG0396 sufC Cysteine desulfur 99.7 4.6E-17 9.9E-22 136.2 9.9 118 232-350 3-134 (251)
349 PLN03140 ABC transporter G fam 99.7 4E-17 8.7E-22 174.6 12.1 121 232-355 867-1011(1470)
350 COG4674 Uncharacterized ABC-ty 99.7 2.5E-17 5.4E-22 134.1 7.4 120 232-353 5-142 (249)
351 PRK15177 Vi polysaccharide exp 99.7 4.4E-17 9.5E-22 141.1 7.8 69 249-330 2-72 (213)
352 COG4152 ABC-type uncharacteriz 99.7 4.6E-17 1E-21 137.1 7.2 111 232-348 2-120 (300)
353 COG4598 HisP ABC-type histidin 99.7 2.2E-17 4.8E-22 132.6 5.0 124 232-357 6-151 (256)
354 PRK13409 putative ATPase RIL; 99.7 9.6E-17 2.1E-21 158.3 10.5 111 232-358 340-453 (590)
355 COG4161 ArtP ABC-type arginine 99.7 7.6E-17 1.7E-21 127.2 7.5 126 232-359 2-142 (242)
356 PRK10636 putative ABC transpor 99.7 1.3E-16 2.9E-21 159.4 11.0 106 232-350 312-421 (638)
357 PRK13409 putative ATPase RIL; 99.7 3.5E-17 7.5E-22 161.4 5.4 117 236-356 77-210 (590)
358 cd03222 ABC_RNaseL_inhibitor T 99.7 2.3E-16 5E-21 131.6 7.6 68 236-318 4-71 (177)
359 TIGR01187 potA spermidine/putr 99.7 1.3E-16 2.9E-21 146.7 6.8 93 265-359 1-101 (325)
360 PRK10636 putative ABC transpor 99.6 4.8E-16 1E-20 155.4 9.8 62 233-296 2-63 (638)
361 KOG0061 Transporter, ABC super 99.6 1.1E-15 2.4E-20 151.2 11.3 117 231-350 24-157 (613)
362 TIGR00956 3a01205 Pleiotropic 99.6 3E-16 6.6E-21 168.3 7.8 83 247-330 74-161 (1394)
363 COG0488 Uup ATPase components 99.6 2.8E-15 6.2E-20 144.4 9.9 86 232-330 3-89 (530)
364 PRK11147 ABC transporter ATPas 99.6 4.8E-15 1.1E-19 148.5 9.8 62 232-295 3-64 (635)
365 PLN03140 ABC transporter G fam 99.6 3.2E-15 6.9E-20 160.2 7.6 81 247-330 178-262 (1470)
366 COG4172 ABC-type uncharacteriz 99.6 1E-14 2.2E-19 131.3 9.5 127 232-358 6-157 (534)
367 COG0488 Uup ATPase components 99.6 4.7E-14 1E-18 136.1 14.0 110 231-352 320-432 (530)
368 COG4107 PhnK ABC-type phosphon 99.6 4.4E-15 9.5E-20 118.8 5.4 85 232-318 6-99 (258)
369 PLN03073 ABC transporter F fam 99.5 2.2E-14 4.8E-19 144.2 8.9 96 231-328 176-288 (718)
370 COG4778 PhnL ABC-type phosphon 99.5 3.3E-14 7.3E-19 113.4 4.9 86 233-318 5-103 (235)
371 cd03238 ABC_UvrA The excision 99.5 8E-14 1.7E-18 116.2 7.2 60 247-315 8-67 (176)
372 COG4586 ABC-type uncharacteriz 99.5 2.8E-14 6.1E-19 122.3 3.3 66 248-314 38-103 (325)
373 KOG0059 Lipid exporter ABCA1 a 99.4 4.1E-13 9E-18 138.6 8.5 123 231-354 563-694 (885)
374 TIGR03238 dnd_assoc_3 dnd syst 99.4 3.6E-13 7.8E-18 125.8 5.1 68 248-318 20-88 (504)
375 KOG0927 Predicted transporter 99.4 5.5E-13 1.2E-17 124.3 5.2 115 231-357 388-507 (614)
376 COG4138 BtuD ABC-type cobalami 99.3 1.6E-12 3.5E-17 104.3 6.2 115 233-354 4-121 (248)
377 KOG0065 Pleiotropic drug resis 99.3 1.2E-11 2.7E-16 126.5 12.7 118 233-353 788-920 (1391)
378 cd03278 ABC_SMC_barmotin Barmo 99.3 1.3E-12 2.8E-17 111.5 3.5 66 251-320 14-88 (197)
379 KOG2355 Predicted ABC-type tra 99.2 3E-11 6.6E-16 99.6 7.2 69 230-299 11-79 (291)
380 TIGR00767 rho transcription te 99.2 7.7E-11 1.7E-15 108.6 10.0 82 197-287 103-195 (415)
381 COG3845 ABC-type uncharacteriz 99.1 4.5E-10 9.7E-15 104.4 11.1 100 230-330 255-360 (501)
382 KOG0066 eIF2-interacting prote 99.1 1.4E-10 3E-15 105.8 6.4 108 231-350 585-695 (807)
383 cd03279 ABC_sbcCD SbcCD and ot 99.1 1.3E-10 2.8E-15 100.8 4.9 113 232-356 5-121 (213)
384 PRK00300 gmk guanylate kinase; 99.1 1.8E-10 4E-15 99.2 5.7 80 258-345 3-94 (205)
385 PRK06002 fliI flagellum-specif 99.0 4.6E-10 1E-14 105.5 7.6 86 231-318 138-230 (450)
386 cd03272 ABC_SMC3_euk Eukaryoti 99.0 2.6E-10 5.7E-15 101.0 5.6 101 232-350 3-130 (243)
387 TIGR02858 spore_III_AA stage I 99.0 5.8E-10 1.3E-14 99.2 6.1 67 261-327 112-179 (270)
388 COG2401 ABC-type ATPase fused 98.9 1.5E-09 3.3E-14 98.6 6.9 95 248-352 397-499 (593)
389 cd03273 ABC_SMC2_euk Eukaryoti 98.9 9.8E-10 2.1E-14 97.7 5.3 90 260-349 25-137 (251)
390 cd01130 VirB11-like_ATPase Typ 98.9 1.1E-09 2.4E-14 92.8 5.3 95 249-346 14-121 (186)
391 PRK01889 GTPase RsgA; Reviewed 98.9 1.5E-09 3.2E-14 101.1 5.0 99 249-350 184-287 (356)
392 cd03270 ABC_UvrA_I The excisio 98.9 1.1E-09 2.5E-14 95.6 4.1 31 247-277 8-38 (226)
393 cd03271 ABC_UvrA_II The excisi 98.9 1.1E-09 2.3E-14 97.1 3.7 103 249-351 10-161 (261)
394 COG4170 SapD ABC-type antimicr 98.9 2.2E-09 4.8E-14 89.0 5.1 107 244-350 17-147 (330)
395 cd03240 ABC_Rad50 The catalyti 98.8 2.4E-09 5.2E-14 92.0 4.4 75 253-331 16-100 (204)
396 PRK07721 fliI flagellum-specif 98.8 4.9E-09 1.1E-13 99.3 6.3 67 248-315 147-221 (438)
397 COG1129 MglA ABC-type sugar tr 98.8 1.4E-08 3E-13 96.3 8.7 94 232-331 263-361 (500)
398 cd03283 ABC_MutS-like MutS-lik 98.8 3.5E-09 7.5E-14 90.5 3.8 84 248-347 15-102 (199)
399 PRK07196 fliI flagellum-specif 98.8 4.2E-09 9E-14 99.1 4.1 80 248-328 144-233 (434)
400 PRK10078 ribose 1,5-bisphospho 98.8 7.3E-09 1.6E-13 87.8 5.2 55 260-317 2-56 (186)
401 TIGR02524 dot_icm_DotB Dot/Icm 98.8 1.7E-08 3.6E-13 93.7 7.3 87 258-345 132-233 (358)
402 PRK08149 ATP synthase SpaL; Va 98.7 1E-08 2.2E-13 96.3 5.3 69 248-317 140-215 (428)
403 cd03274 ABC_SMC4_euk Eukaryoti 98.7 5E-09 1.1E-13 90.5 2.2 75 232-329 5-81 (212)
404 KOG0065 Pleiotropic drug resis 98.7 2.9E-08 6.3E-13 102.4 6.8 117 247-366 128-256 (1391)
405 cd01131 PilT Pilus retraction 98.7 3.4E-08 7.3E-13 84.5 5.9 82 262-347 3-97 (198)
406 PLN02796 D-glycerate 3-kinase 98.6 1.1E-08 2.4E-13 93.0 1.7 62 247-308 79-151 (347)
407 TIGR02322 phosphon_PhnN phosph 98.6 7.7E-08 1.7E-12 81.0 6.4 63 260-323 1-79 (179)
408 PRK15494 era GTPase Era; Provi 98.6 3.3E-08 7.1E-13 91.6 4.0 55 229-284 15-76 (339)
409 TIGR02788 VirB11 P-type DNA tr 98.6 4.2E-08 9.1E-13 89.7 4.7 60 253-315 137-196 (308)
410 TIGR00235 udk uridine kinase. 98.6 3.4E-08 7.4E-13 85.2 3.7 29 258-286 4-32 (207)
411 PRK06315 type III secretion sy 98.6 3.9E-08 8.5E-13 92.8 4.3 101 248-349 153-277 (442)
412 TIGR03263 guanyl_kin guanylate 98.6 7.3E-08 1.6E-12 81.2 5.4 78 260-345 1-90 (180)
413 PRK09825 idnK D-gluconate kina 98.6 7.2E-08 1.6E-12 80.7 5.2 64 259-328 2-67 (176)
414 KOG0062 ATPase component of AB 98.6 1.3E-07 2.7E-12 88.6 7.1 116 230-356 360-479 (582)
415 KOG0062 ATPase component of AB 98.6 9.5E-08 2.1E-12 89.4 5.8 51 230-282 78-128 (582)
416 KOG0927 Predicted transporter 98.6 1.2E-07 2.7E-12 89.1 6.5 60 230-291 73-132 (614)
417 cd00071 GMPK Guanosine monopho 98.5 1.1E-07 2.5E-12 76.1 4.2 74 263-344 2-88 (137)
418 PRK03846 adenylylsulfate kinas 98.5 1.2E-07 2.6E-12 81.2 4.4 56 258-317 22-78 (198)
419 cd01136 ATPase_flagellum-secre 98.5 3.1E-07 6.6E-12 83.7 6.9 50 247-297 57-106 (326)
420 TIGR03497 FliI_clade2 flagella 98.4 3.5E-07 7.6E-12 86.2 5.6 52 248-300 126-177 (413)
421 PRK09862 putative ATP-dependen 98.4 3.4E-07 7.3E-12 88.2 5.0 64 235-300 187-250 (506)
422 PF13555 AAA_29: P-loop contai 98.4 5.2E-07 1.1E-11 60.6 4.3 36 252-287 14-50 (62)
423 COG1245 Predicted ATPase, RNas 98.4 3.9E-07 8.4E-12 84.2 5.0 75 239-328 342-422 (591)
424 cd03280 ABC_MutS2 MutS2 homolo 98.4 5.1E-07 1.1E-11 77.4 5.4 42 249-290 16-66 (200)
425 cd03275 ABC_SMC1_euk Eukaryoti 98.4 4.1E-07 8.9E-12 80.7 4.9 91 261-351 23-126 (247)
426 PRK07594 type III secretion sy 98.4 4.9E-07 1.1E-11 85.3 5.4 66 232-299 129-194 (433)
427 TIGR00101 ureG urease accessor 98.4 4.3E-07 9.2E-12 77.6 4.6 57 262-319 3-59 (199)
428 TIGR02546 III_secr_ATP type II 98.3 5.2E-07 1.1E-11 85.5 5.2 76 247-323 133-214 (422)
429 PRK05480 uridine/cytidine kina 98.3 1.2E-06 2.6E-11 75.7 6.7 44 258-322 4-47 (209)
430 PRK07960 fliI flagellum-specif 98.3 4E-07 8.7E-12 85.8 3.8 68 249-317 165-238 (455)
431 PRK09270 nucleoside triphospha 98.3 6.7E-07 1.5E-11 78.4 5.1 54 258-315 31-88 (229)
432 cd02026 PRK Phosphoribulokinas 98.3 6.6E-07 1.4E-11 80.2 4.9 55 262-318 1-55 (273)
433 PRK10733 hflB ATP-dependent me 98.3 1.6E-08 3.5E-13 101.3 -6.1 29 256-286 183-211 (644)
434 PRK07261 topology modulation p 98.3 6E-07 1.3E-11 74.9 4.1 65 261-326 1-69 (171)
435 PRK08472 fliI flagellum-specif 98.3 1.1E-06 2.5E-11 82.8 6.2 54 248-302 146-199 (434)
436 PRK09518 bifunctional cytidyla 98.3 4.6E-07 1E-11 92.2 3.8 64 261-329 2-118 (712)
437 PRK10416 signal recognition pa 98.3 5.3E-07 1.2E-11 82.4 3.7 71 258-328 112-189 (318)
438 PLN02318 phosphoribulokinase/u 98.3 7E-07 1.5E-11 86.3 4.5 60 261-328 66-126 (656)
439 TIGR03498 FliI_clade3 flagella 98.3 8.2E-07 1.8E-11 83.6 4.2 52 249-301 130-181 (418)
440 PRK05922 type III secretion sy 98.2 3.2E-06 6.8E-11 79.8 7.6 51 249-300 147-197 (434)
441 TIGR00630 uvra excinuclease AB 98.2 2.2E-06 4.7E-11 88.5 7.1 40 232-278 612-651 (924)
442 PRK09099 type III secretion sy 98.2 1.7E-06 3.7E-11 81.9 5.9 52 248-300 152-203 (441)
443 TIGR01026 fliI_yscN ATPase Fli 98.2 1.2E-06 2.6E-11 83.3 4.4 53 247-300 151-203 (440)
444 PRK06793 fliI flagellum-specif 98.2 2.1E-06 4.5E-11 81.0 6.0 67 233-301 131-197 (432)
445 PRK00349 uvrA excinuclease ABC 98.2 2.7E-06 5.8E-11 88.0 6.7 43 232-281 614-656 (943)
446 cd01128 rho_factor Transcripti 98.2 4E-06 8.6E-11 73.9 6.8 57 254-310 10-68 (249)
447 TIGR00554 panK_bact pantothena 98.2 1.5E-06 3.3E-11 78.1 4.1 45 261-305 63-109 (290)
448 PRK00635 excinuclease ABC subu 98.2 3.1E-06 6.8E-11 91.8 7.1 40 232-278 600-639 (1809)
449 cd03282 ABC_MSH4_euk MutS4 hom 98.2 1.9E-06 4.2E-11 73.8 4.4 35 247-281 16-50 (204)
450 PTZ00035 Rad51 protein; Provis 98.2 2.8E-06 6.1E-11 78.4 5.8 82 256-343 114-202 (337)
451 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.8E-06 3.8E-11 78.2 4.3 68 250-319 152-223 (287)
452 PRK00023 cmk cytidylate kinase 98.1 3E-06 6.5E-11 73.8 5.0 70 260-329 4-91 (225)
453 PRK06995 flhF flagellar biosyn 98.1 1.3E-06 2.8E-11 83.6 2.8 61 250-329 246-306 (484)
454 cd03287 ABC_MSH3_euk MutS3 hom 98.1 2.5E-06 5.3E-11 74.0 4.3 48 247-294 18-66 (222)
455 PRK05688 fliI flagellum-specif 98.1 1.6E-06 3.5E-11 82.0 3.3 39 248-287 157-195 (451)
456 PRK00635 excinuclease ABC subu 98.1 3.1E-06 6.7E-11 91.9 5.0 57 233-295 936-992 (1809)
457 TIGR03496 FliI_clade1 flagella 98.1 3E-06 6.4E-11 79.9 4.4 64 235-300 114-177 (411)
458 cd03243 ABC_MutS_homologs The 98.1 4.2E-06 9E-11 71.9 4.5 30 252-281 21-50 (202)
459 PLN03046 D-glycerate 3-kinase; 98.0 3.9E-06 8.3E-11 78.0 4.2 49 261-309 213-264 (460)
460 PRK00098 GTPase RsgA; Reviewed 98.0 5E-06 1.1E-10 75.7 4.7 62 259-320 163-227 (298)
461 PRK06731 flhF flagellar biosyn 98.0 2.9E-06 6.3E-11 75.5 2.7 39 259-297 74-115 (270)
462 PRK10751 molybdopterin-guanine 98.0 6.2E-06 1.3E-10 68.2 4.3 36 261-296 7-45 (173)
463 cd02025 PanK Pantothenate kina 98.0 3.6E-06 7.8E-11 73.1 3.0 32 262-293 1-34 (220)
464 cd02023 UMPK Uridine monophosp 98.0 4.9E-06 1.1E-10 71.2 3.7 32 262-295 1-32 (198)
465 cd00879 Sar1 Sar1 subfamily. 98.0 5.5E-06 1.2E-10 70.3 4.0 49 249-298 9-65 (190)
466 cd04155 Arl3 Arl3 subfamily. 98.0 8.9E-06 1.9E-10 67.8 5.1 40 260-299 14-61 (173)
467 PF03193 DUF258: Protein of un 98.0 7.1E-06 1.5E-10 66.8 4.1 43 249-292 25-67 (161)
468 PRK11098 microcin B17 transpor 98.0 0.0024 5.3E-08 60.1 21.2 193 11-210 189-395 (409)
469 PRK05541 adenylylsulfate kinas 98.0 3.6E-06 7.9E-11 70.6 2.3 43 257-299 4-47 (176)
470 TIGR00368 Mg chelatase-related 98.0 5.3E-06 1.1E-10 80.4 3.6 56 247-302 198-253 (499)
471 TIGR02239 recomb_RAD51 DNA rep 98.0 4.4E-06 9.6E-11 76.5 2.9 90 249-344 84-181 (316)
472 PRK08972 fliI flagellum-specif 98.0 8.3E-06 1.8E-10 76.8 4.7 39 248-287 151-189 (444)
473 cd01393 recA_like RecA is a b 98.0 1E-05 2.2E-10 70.7 5.1 84 256-345 15-105 (226)
474 PRK00889 adenylylsulfate kinas 98.0 6E-06 1.3E-10 69.2 3.4 40 258-297 2-42 (175)
475 PRK14530 adenylate kinase; Pro 97.9 5.6E-06 1.2E-10 71.8 3.1 27 260-286 3-29 (215)
476 PRK07429 phosphoribulokinase; 97.9 1.2E-05 2.5E-10 73.8 5.1 53 262-317 10-63 (327)
477 cd03276 ABC_SMC6_euk Eukaryoti 97.9 8.1E-06 1.8E-10 69.7 3.8 70 250-321 12-82 (198)
478 TIGR00606 rad50 rad50. This fa 97.9 2.2E-05 4.7E-10 85.5 7.9 56 260-317 28-88 (1311)
479 cd01123 Rad51_DMC1_radA Rad51_ 97.9 1.7E-05 3.6E-10 69.8 5.9 81 256-342 15-102 (235)
480 PRK06820 type III secretion sy 97.9 1.4E-05 3.1E-10 75.6 5.4 49 247-296 151-199 (440)
481 PRK11545 gntK gluconate kinase 97.9 5.5E-06 1.2E-10 68.5 2.3 46 266-317 1-47 (163)
482 TIGR00455 apsK adenylylsulfate 97.9 8.7E-06 1.9E-10 68.8 3.1 44 256-299 14-58 (184)
483 cd04104 p47_IIGP_like p47 (47- 97.9 1.4E-05 3.1E-10 68.3 4.4 34 262-295 3-36 (197)
484 PRK12369 putative transporter; 97.9 0.0057 1.2E-07 56.2 21.5 191 14-209 118-320 (326)
485 PRK06936 type III secretion sy 97.9 1.7E-05 3.7E-10 74.9 5.1 40 248-288 151-190 (439)
486 cd03285 ABC_MSH2_euk MutS2 hom 97.8 2.2E-05 4.8E-10 68.3 5.0 35 247-281 17-51 (222)
487 PF06472 ABC_membrane_2: ABC t 97.8 0.0022 4.7E-08 58.0 17.9 122 14-135 130-252 (281)
488 PRK13851 type IV secretion sys 97.8 2E-05 4.4E-10 72.7 4.8 41 256-296 158-198 (344)
489 PRK13477 bifunctional pantoate 97.8 1.9E-05 4.1E-10 76.4 4.6 43 249-292 274-319 (512)
490 PLN02165 adenylate isopentenyl 97.8 2E-05 4.3E-10 71.7 4.2 45 258-302 41-89 (334)
491 PRK00349 uvrA excinuclease ABC 97.8 9.9E-06 2.1E-10 83.9 2.5 39 232-277 5-43 (943)
492 TIGR00630 uvra excinuclease AB 97.8 1E-05 2.2E-10 83.7 2.5 29 249-277 11-39 (924)
493 cd03284 ABC_MutS1 MutS1 homolo 97.8 2E-05 4.4E-10 68.2 4.0 36 247-283 18-53 (216)
494 PRK08533 flagellar accessory p 97.8 4.1E-05 9E-10 67.0 5.7 39 257-295 21-60 (230)
495 COG0529 CysC Adenylylsulfate k 97.8 1.9E-05 4.1E-10 64.2 3.1 43 256-298 19-62 (197)
496 PRK14737 gmk guanylate kinase; 97.7 3.7E-05 8.1E-10 64.9 4.7 49 259-309 3-63 (186)
497 TIGR00017 cmk cytidylate kinas 97.7 2.2E-05 4.7E-10 68.0 3.2 54 262-315 4-69 (217)
498 PRK14738 gmk guanylate kinase; 97.7 4.1E-05 8.9E-10 65.9 4.8 27 258-284 11-37 (206)
499 PRK09183 transposase/IS protei 97.7 1.4E-05 3E-10 71.3 1.8 58 235-293 74-135 (259)
500 PF13207 AAA_17: AAA domain; P 97.7 2.7E-05 5.8E-10 60.8 3.2 23 262-284 1-23 (121)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-71 Score=524.92 Aligned_cols=363 Identities=26% Similarity=0.381 Sum_probs=316.4
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++|||++++||+++|++.|.+.+...++..+.....+++..++.+.+|+++||.++++.+..+++.+++.++|.+..++.
T Consensus 236 iaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rkl 315 (716)
T KOG0058|consen 236 IAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKL 315 (716)
T ss_pred hhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998888888888889999999999
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 158 (367)
.+..+++.++.+....|.+.++||||+|+.|+.+.++|.+..+...+...+............++..+.....++++.
T Consensus 316 S~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~ 395 (716)
T KOG0058|consen 316 SKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGH 395 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999988887766544333333333233333343333333332
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
....|.++.|.+..|+.|...+...+..++..+..+.++..|.+|++|+++.+|.-+. .....+. ...+.|+|+||
T Consensus 396 Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~---~G~~~p~-~~~G~IeF~~V 471 (716)
T KOG0058|consen 396 LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL---TGTLAPD-HLQGVIEFEDV 471 (716)
T ss_pred hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC---CCccccc-cccceEEEEEe
Confidence 2234889999999999999999999999999999999999999999999998664332 1111111 35788999999
Q ss_pred EEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 239 sf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
+|+||.. +.++|+|+||+|+|||+||+||||||||||+++||++||+|++|+|++||+|+++++...||++||+|.|||
T Consensus 472 sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 472 SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 9999755 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 318 TLFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 318 ~lf~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
.||++||+|||.++ +++++|++++|+++|++|+||.++|+||||.+||+|
T Consensus 552 vLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 552 VLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG 602 (716)
T ss_pred eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcc
Confidence 99999999999988 578999999999999999999999999999999997
No 2
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-65 Score=524.85 Aligned_cols=367 Identities=51% Similarity=0.854 Sum_probs=345.7
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
|.|||.+++|+++||+++|++.+|..+|..+..+++.++.+++.++++.+..|+++++++|+.++..++..+|.+..++.
T Consensus 906 m~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReL 985 (1381)
T KOG0054|consen 906 MSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSREL 985 (1381)
T ss_pred chhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (367)
.+....+++++.+|+.|+++|..|||+|+.+++|.+++....+.+.+........+.|+...++.+.++++..++++.+.
T Consensus 986 kRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl 1065 (1381)
T KOG0054|consen 986 KRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL 1065 (1381)
T ss_pred HHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999998888877776665
Q ss_pred hCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 161 LPGK-HLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 161 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
.... .++|.++.+++|++.++..+..+.+..+.+.+.++|.+|+.+..+.|+|.+...+...+++.||..|+|+|+|++
T Consensus 1066 ~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~ 1145 (1381)
T KOG0054|consen 1066 LPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLS 1145 (1381)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeE
Confidence 5533 678999999999999999999999999999999999999999999887744433333356789999999999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
.+|+|+.|++|+||||+|+|||||+|||++|||||||++.|.|+.+|.+|+|.+||+|+.++...++|++++++||||.|
T Consensus 1146 ~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1146 LRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred EEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|+||+|.|+.+.++++|+++|+||++|+|.++|.++|.|||++|.|+|
T Consensus 1226 FsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG 1273 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGG 1273 (1381)
T ss_pred ecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCC
Confidence 999999999999999999999999999999999999999999999998
No 3
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.3e-65 Score=503.63 Aligned_cols=363 Identities=25% Similarity=0.366 Sum_probs=319.1
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
+.||+++++|++++|+. |.+.+++++...+...+..+..+++.++++++++|+++++++..++++.++...+.+..++.
T Consensus 242 l~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~ 320 (709)
T COG2274 242 LSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRK 320 (709)
T ss_pred HHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999998 79999999998888888889999999999999999999988877777777766667766677
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV- 159 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 159 (367)
.++..+..++.++++.|.++|+++||..+.|.++..+|++.+.++.+...+......+......++..+..+++.++..
T Consensus 321 ~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~ 400 (709)
T COG2274 321 TRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400 (709)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788889999999999999999999999999999999988887777776677666666666666555554432
Q ss_pred -HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 160 -LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 160 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
+..|.++.|.+.++..+...+..++..+...+..+++...+.+|+.++++.|+|.+.... ....++..++|+|+||
T Consensus 401 lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~---~~~~~~~~g~I~~~nv 477 (709)
T COG2274 401 LVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT---LIHLPKLQGEIEFENV 477 (709)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc---cccccccCceEEEEEE
Confidence 234889999998888888889999999999999999999999999999998876433211 1112235789999999
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+|+|+++++++|+|+|++|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+.+++.+++|++|+||+||++
T Consensus 478 sf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 478 SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred EEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 99998887789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||+|||+|||+++. ++++|++++||+.|++|+||.++|+||||+|||+|
T Consensus 558 Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G 607 (709)
T COG2274 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607 (709)
T ss_pred hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 99999999999874 68899999999999999999999999999999998
No 4
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-62 Score=483.43 Aligned_cols=363 Identities=21% Similarity=0.242 Sum_probs=292.0
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYI-QGYYLSSAREL 80 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~ 80 (367)
.||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.++++++..+++..++ .....+..++.
T Consensus 102 ~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 181 (529)
T TIGR02868 102 AGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAA 181 (529)
T ss_pred cccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 58899999999999999999999998888888888888888889999999999988766554444333 33333333444
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 158 (367)
.++..+..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..............+..+...++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (529)
T TIGR02868 182 EVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP 261 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556678899999999999999999999999999999888877766555544444444333333333332222221
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
.+..|.+++|.+.+++.+...+..++..+......++++..+.+|+.++++.+++.+...... .....+..++|+|+||
T Consensus 262 ~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~-~~~~~~~~~~I~~~~v 340 (529)
T TIGR02868 262 AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA-AGALGLGKPTLELRDL 340 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC-CcccCCCCceEEEEEE
Confidence 223477888888888888778888888888889999999999999999998765422110000 0001112357999999
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+|+|++++ ++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|++++ .+++|++|+||||||+
T Consensus 341 sf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~ 418 (529)
T TIGR02868 341 SFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAH 418 (529)
T ss_pred EEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcc
Confidence 99997554 499999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||+|||+|||+++ ++++||++++||+.|+++++|.+||+||||+|||+|
T Consensus 419 lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 419 LFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 9999999999987 468999999999999999999999999999999987
No 5
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.5e-62 Score=520.95 Aligned_cols=367 Identities=38% Similarity=0.654 Sum_probs=315.2
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++||+++++|++++|+++|++.++..++..+..++..++.+++.++++++.+|.+++++++++++..++.+++.+..++.
T Consensus 1053 ~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1132 (1522)
T TIGR00957 1053 MSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQL 1132 (1522)
T ss_pred hhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999988888888888888888877776666666667778887777777
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (367)
.+...+.++++.+++.|+++|+++||+|+.++++.+++.+..+...+..........|.......+..++.++++.+.+.
T Consensus 1133 ~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1212 (1522)
T TIGR00957 1133 KRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVI 1212 (1522)
T ss_pred HHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999999988888777766656667777766666555443333333332
Q ss_pred hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEE
Q 017723 161 LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV 240 (367)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf 240 (367)
..+.+++|.+++++.|...+..++..+...+..+..++.|++|+.++++.+++.+...+...++..|+..+.|+|+||+|
T Consensus 1213 ~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf 1292 (1522)
T TIGR00957 1213 SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCL 1292 (1522)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEE
Confidence 34678889988999999989889999999999999999999999999987665331111112223345667899999999
Q ss_pred EeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 241 ~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+||
T Consensus 1293 ~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF 1372 (1522)
T TIGR00957 1293 RYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF 1372 (1522)
T ss_pred EeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc
Confidence 99876567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 321 ~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|||||||++.++++||++++|+++|+++++|.++|+||||++||+|
T Consensus 1373 ~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1373 SGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred CccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 99999999976789999999999999999999999999999999987
No 6
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-61 Score=484.54 Aligned_cols=365 Identities=21% Similarity=0.258 Sum_probs=289.4
Q ss_pred Cccccc-CChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDS-TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARE 79 (367)
Q Consensus 1 ~~~f~~-~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 79 (367)
++|||+ +++|.+.+|+.+|...++..+...+..+++++..+++.+++.++++|.++++++...|++.+......+..+.
T Consensus 755 ~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~ 834 (1228)
T KOG0055|consen 755 VGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKG 834 (1228)
T ss_pred CcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 579995 3349999999999999999999999999999999999999999999999988766666665554444444444
Q ss_pred HHhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 80 LMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV 159 (367)
Q Consensus 80 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (367)
...+..++..+......|++.++|||++|++|+++.+.|.+..++..+...+..........+.+.+..+...+++++..
T Consensus 835 ~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~ 914 (1228)
T KOG0055|consen 835 FSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGA 914 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555555667778899999999999999999999999999988877766665554444444444444444444444432
Q ss_pred H-h-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEe
Q 017723 160 L-L-PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELED 237 (367)
Q Consensus 160 ~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 237 (367)
. . .|..+...+...+.....-.........+...+.++..|+.+++++++.++..+... ......+...|+|+|+|
T Consensus 915 ~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~--~~~~~~~~~~G~I~~~~ 992 (1228)
T KOG0055|consen 915 RLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS--TSGGKLPNVKGDIEFRN 992 (1228)
T ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC--CCCCccccceeEEEEee
Confidence 2 2 265655544332222222222333445566788999999999999999866332211 11111223578899999
Q ss_pred eEEEeCCCC-CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecC
Q 017723 238 LKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (367)
Q Consensus 238 vsf~Y~~~~-~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~ 316 (367)
|+|+||..+ .++|+|+||+|++||++||||||||||||++.||.|+|||++|.|++||+|+++++.+++|++++.|.||
T Consensus 993 V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 993 VSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred eEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccC
Confidence 999998543 3599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 317 PTLFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 317 ~~lf~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|.||++||||||+++ ++++++|+.+|+|.|+.|+||.+||+||||.+||+|
T Consensus 1073 P~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1073 PVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred chhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 999999999999998 468999999999999999999999999999999997
No 7
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.8e-61 Score=475.88 Aligned_cols=361 Identities=19% Similarity=0.223 Sum_probs=286.4
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.||+++++|++++|+++|++.++.++...+..++..++.+++.++++++++|.++++++..+++..++...+.++.++..
T Consensus 112 ~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 191 (588)
T PRK11174 112 AWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADAN 191 (588)
T ss_pred hhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999998888888888888888888999999999988776666666666666667667777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAAL-LIVL 160 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 160 (367)
++..+..+++++.+.|.++|+++||.|+.|+++.+++++..++..+...+..+...........+..+...++++ ....
T Consensus 192 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (588)
T PRK11174 192 RRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFS 271 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778889999999999999999999999999999988888776655544443333333333333222221111 1111
Q ss_pred hCCCCCchHH---------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcc
Q 017723 161 LPGKHLPGFV---------GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHG 231 (367)
Q Consensus 161 ~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (367)
..|.++.|.+ ..++.+...+..++..+...+..++++..+.+|+.++++.+++.+. ......+.+..+
T Consensus 272 ~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~ 348 (588)
T PRK11174 272 YLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ---QGEKELASNDPV 348 (588)
T ss_pred HhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCccccCCCCCc
Confidence 2244444422 1122333455677888888888999999999999999987553211 110000101234
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+|+||+|.|+++ +++|+|+||+|+||+++||||+||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+
T Consensus 349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence 69999999988654 45999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred EeecCccccccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 312 IIPQEPTLFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||||||+||+|||+|||+++ +++++||+++||+.|+++++|.+||+||||++||+|
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 99999999999999999998 469999999999999999999999999999999987
No 8
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.7e-60 Score=480.48 Aligned_cols=360 Identities=21% Similarity=0.278 Sum_probs=298.5
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.||+++++|++++|++ |++.+++++...+...+..+..+++.++++++++|+++++++.++++..++...+.++.++..
T Consensus 225 ~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 303 (686)
T TIGR03797 225 SFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKE 303 (686)
T ss_pred HHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998 789998887777666666677777888899999999988776666666656666666666666
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (367)
++..+..++..+.+.|.++|+++||+++.|+++.++|++..++..+...+......+.......+..+..+++.++. .
T Consensus 304 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 383 (686)
T TIGR03797 304 RRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISL 383 (686)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778899999999999999999999999999999988887776666555555554444444333333222222 2
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
...|.++.|.+.++..+...+..++..+...+..++++..+.+|+.++++.+++.+. ....+ .+..+.|+|+||+
T Consensus 384 v~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvs 458 (686)
T TIGR03797 384 LGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVT 458 (686)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEE
Confidence 234888999888888888888888999999999999999999999999987554321 10011 1234579999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++
T Consensus 459 f~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 538 (686)
T TIGR03797 459 FRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538 (686)
T ss_pred EEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc
Confidence 99976666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|+|||+|||+++.++++|++++||+.|+++++|+++|+||||++||+|
T Consensus 539 f~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 539 MSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 999999999988668999999999999999999999999999999987
No 9
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-60 Score=510.01 Aligned_cols=367 Identities=37% Similarity=0.658 Sum_probs=296.2
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++||+++++|++++|+++|++.++..++..+..++..++.+++.++++++++|..+++++|++++...+..++.+..++.
T Consensus 1001 ~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~ 1080 (1622)
T PLN03130 1001 MSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREV 1080 (1622)
T ss_pred HHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998888888888888888888888888665555565555555556666666777
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (367)
.+....+++++.+++.|+++|+++||+|+.++++.+.+.+..+...+..........|.......+..++..+.+.+.+.
T Consensus 1081 ~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~ 1160 (1622)
T PLN03130 1081 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVM 1160 (1622)
T ss_pred HHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788999999999999999999999999988888777776655544444445565544444443333322222221
Q ss_pred hCCCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEE
Q 017723 161 LPGKH-----LPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIEL 235 (367)
Q Consensus 161 ~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 235 (367)
..+.. ..+.++.++.+...+...+..+......+++++.|++|+.++++.|+|.+...+...++..|+..+.|+|
T Consensus 1161 ~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1240 (1622)
T PLN03130 1161 QNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKF 1240 (1622)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEE
Confidence 11211 1344556667777777777777788888899999999999999887664321111122223455678999
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeec
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q 315 (367)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||
T Consensus 1241 ~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1241 EDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred EEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECC
Confidence 99999998766679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 316 ~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||+||+|||||||+++.+++|+++++||++|+++++|.++|+||||+|||+|
T Consensus 1321 dp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G 1372 (1622)
T PLN03130 1321 APVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG 1372 (1622)
T ss_pred CCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCC
Confidence 9999999999999988888999999999999999999999999999999987
No 10
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.9e-60 Score=477.80 Aligned_cols=362 Identities=23% Similarity=0.309 Sum_probs=301.1
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.++++.+...++..++...+.++.++..
T Consensus 250 ~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 329 (711)
T TIGR00958 250 GFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLS 329 (711)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999998888888888888899999999999999988776666776777777777777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
++.++..++..+.+.|.++|+++||.|+.|+++.++|++..++..+...+..............+..+...++.++ ..
T Consensus 330 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~l 409 (711)
T TIGR00958 330 EELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQL 409 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888889999999999999999999999999999988887766554433333322222222222222211111 22
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
+..|.++.|.+.+++.+...+..++..+...+..++++..+.+|+.++++.+++.+.. .. ..+.+..+.|+|+||+
T Consensus 410 v~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~--~~~~~~~~~I~~~nVs 485 (711)
T TIGR00958 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GT--LAPLNLEGLIEFQDVS 485 (711)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CC--CCCCCCCCeEEEEEEE
Confidence 2358889998888888888888899999999999999999999999999875542211 11 1111234579999999
Q ss_pred EEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 240 VRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 240 f~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||+
T Consensus 486 f~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~ 565 (711)
T TIGR00958 486 FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV 565 (711)
T ss_pred EECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc
Confidence 999754 3569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|++||||||+++ ++++||++++|++.++++++++++|+||||++||+|
T Consensus 566 lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 566 LFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred ccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 9999999999987 467899999999999999999999999999999987
No 11
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1e-59 Score=465.45 Aligned_cols=360 Identities=24% Similarity=0.372 Sum_probs=296.3
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.++..+......+..+++.+++.+++++..+|.++++++...++.......+.++.++..
T Consensus 101 ~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 180 (567)
T COG1132 101 SFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLS 180 (567)
T ss_pred HHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999998887666666788889999999999999988877666666666566665566777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
+..++..+++.+.+.|.++|++++|+|+.++...+++++..+...+...+..............+..+...+..++ ..
T Consensus 181 ~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (567)
T COG1132 181 RRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFL 260 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788899999999999999999999999888888777666555544433333333333333333332222222 12
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
...+.++.|.+.+++.+...+..++..+......++.+..+.+|+.++++.+++... .... .....++|+|+||+
T Consensus 261 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vs 335 (567)
T COG1132 261 VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVS 335 (567)
T ss_pred HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEE
Confidence 234678888888888888888889999999999999999999999999987543211 1110 11234679999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++ +++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+|
T Consensus 336 f~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 336 FSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred EEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 999754 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++||+|||+++. +++|||+++||+.|+++|+|.++|+||||++||+|
T Consensus 415 F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G 463 (567)
T COG1132 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERG 463 (567)
T ss_pred ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCC
Confidence 9999999999985 58999999999999999999999999999999987
No 12
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-59 Score=502.11 Aligned_cols=367 Identities=37% Similarity=0.655 Sum_probs=290.2
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++||+++++|++++|+++|++.++..++..+..++..++.+++.+++++.+++...++++|+.++......++.+..++.
T Consensus 998 ~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1077 (1495)
T PLN03232 998 MLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREV 1077 (1495)
T ss_pred eeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998888888888777777777777776555555555444444455555555666
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (367)
.+....+++++.+++.|+++|+++||+|+.++++.+++.+..+...+..........|.......+..++....+.+.+.
T Consensus 1078 ~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~ 1157 (1495)
T PLN03232 1078 RRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL 1157 (1495)
T ss_pred HHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888999999999999999999999999988888777776665544433344555444433333222222222221
Q ss_pred hCCCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEE
Q 017723 161 LPGKH-----LPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIEL 235 (367)
Q Consensus 161 ~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 235 (367)
..+.. ..+.++.++.+...+..++..+...+..++.++.+.+|+.++++.+++.+...+...++..|+..+.|+|
T Consensus 1158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f 1237 (1495)
T PLN03232 1158 RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKF 1237 (1495)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEE
Confidence 12221 1233445566666777777778888889999999999999999877654321111112223455678999
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeec
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q 315 (367)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+++++|||
T Consensus 1238 ~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQ 1317 (1495)
T PLN03232 1238 EDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ 1317 (1495)
T ss_pred EEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECC
Confidence 99999997766679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 316 ~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||+||+|||||||+++++++|+++++||++|+++++|.++|+||||++||+|
T Consensus 1318 dp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1318 SPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred CCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 9999999999999988789999999999999999999999999999999987
No 13
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.4e-59 Score=475.34 Aligned_cols=361 Identities=19% Similarity=0.215 Sum_probs=296.0
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.||+++++|++++|++ |.+.+++++.......+..++.+++.++++++++|+++++++..+++..++...+.++.++..
T Consensus 245 ~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 323 (708)
T TIGR01193 245 SFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLN 323 (708)
T ss_pred HHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998 889998877776666666777777788889999999988877666666666677777777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
++..+..++..+.+.|.++|+++||+++.|+++.++|++..++..+...+..............+..+..+++.++ ..
T Consensus 324 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~l 403 (708)
T TIGR01193 324 HDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYL 403 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788889999999999999999999999999999888877666555444333333333233222222222222 22
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
+..|.+++|.+.++..+...+..++..+...+..++.+..+.+|+.++++.+++.+... . ....++..+.|+|+||+
T Consensus 404 v~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--~-~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 404 VMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK--K-RTELNNLNGDIVINDVS 480 (708)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc--c-ccCCCCCCCcEEEEEEE
Confidence 23588999988888888888888999999999999999999999999998765432211 0 01111234579999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+|
T Consensus 481 f~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 481 YSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred EEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 999744 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCC--CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPL--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~--~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|+|||+|||+++ ++++++++++|++.++++++|..+|+||||++||+|
T Consensus 560 f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 560 FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 999999999987 368999999999999999999999999999999987
No 14
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.8e-59 Score=475.15 Aligned_cols=365 Identities=18% Similarity=0.214 Sum_probs=302.2
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++| +.+++++...+..++..++.+++.++++++++|+++++++..+++..++...+.++.++..
T Consensus 243 ~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 321 (710)
T TIGR03796 243 RFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDAN 321 (710)
T ss_pred HHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988 6788888877777888888888889999999999988877766777767777777777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (367)
++..+..++..+.+.|.++|+++||+++.|+.+.++|++...+..+...+......+.......+..+..+++.++. .
T Consensus 322 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~ 401 (710)
T TIGR03796 322 RRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLR 401 (710)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778899999999999999999999999999999888777766555555555444444444433333322222 2
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCC--CCCCCC-CCCcceEEEE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--TKPPAS-WPSHGRIELE 236 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~I~~~ 236 (367)
+..|.++.|.+.++..+...+..++..+...+..++++..+++|+.++++.+++.+..... ...... +...+.|+++
T Consensus 402 v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~ 481 (710)
T TIGR03796 402 VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481 (710)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEE
Confidence 2348889998888888888888899999999999999999999999999876543221100 000111 1234679999
Q ss_pred eeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecC
Q 017723 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (367)
Q Consensus 237 nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~ 316 (367)
||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+|||||
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 99999987666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 317 PTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 317 ~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++|+|||+|||+++. +++++++++||+.++++++|.++|+||||++||+|
T Consensus 562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred ChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 9999999999998874 68999999999999999999999999999999987
No 15
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.8e-59 Score=456.96 Aligned_cols=361 Identities=18% Similarity=0.229 Sum_probs=292.4
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.++++++...++..++...+.++.++..
T Consensus 93 ~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~ 172 (529)
T TIGR02857 93 GWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAA 172 (529)
T ss_pred hhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999988887778888888888888899999998887765555555444555556665666
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-H-HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAAL-L-IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~ 159 (367)
++..+..+++.+.+.|.++|+++||.|+.|+++.++|++..++..+...+..+...+.......+..+..+++.+ . ..
T Consensus 173 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (529)
T TIGR02857 173 RKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFR 252 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677788999999999999999999999999999998887776665554444444433333333332222111 1 12
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
...|.++.|.+.+++.+...+..++..+...+..++++..+.+|+.++++.+++... ....+ .+..+.|+++||+
T Consensus 253 ~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~~~~--~~~~~~i~~~~v~ 327 (529)
T TIGR02857 253 LLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KAPVT--AAPAPSLEFSGLS 327 (529)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcCCC--CCCCCeEEEEEEE
Confidence 235778888777777777777888888888899999999999999999975432111 11011 1123479999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+||++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||+|||++
T Consensus 328 f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~l 407 (529)
T TIGR02857 328 VAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL 407 (529)
T ss_pred EECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcc
Confidence 99986555699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++||+|||+++. +++|++++++++.++++++++++|+||||++||+|
T Consensus 408 f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 408 FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 9999999999864 57899999999999999999999999999999986
No 16
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.6e-59 Score=498.41 Aligned_cols=367 Identities=31% Similarity=0.510 Sum_probs=304.9
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
+.||+++++|++++|+++|++.++..++..+..++..++.+++.++++++.+|.++++++++.++...+..++.+..++.
T Consensus 1046 ~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~ 1125 (1560)
T PTZ00243 1046 MSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREI 1125 (1560)
T ss_pred hhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999998888888888888888888888888766666665555566677778888888
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV- 159 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 159 (367)
.+......+++.+++.|+++|+++||+|++++.+.+++.+..+...+..........|......++..++.+.+.++.+
T Consensus 1126 ~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~ 1205 (1560)
T PTZ00243 1126 RRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVI 1205 (1560)
T ss_pred HHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999998888877766665666777766666555544332222211
Q ss_pred --Hh-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCC-CC-C----------------
Q 017723 160 --LL-PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP-AI-I---------------- 218 (367)
Q Consensus 160 --~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~-~~-~---------------- 218 (367)
.. .+..++|.++.++.+...+..++..+...+..++.++.+++|+.++++.+++++ .. .
T Consensus 1206 ~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 1285 (1560)
T PTZ00243 1206 GTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADV 1285 (1560)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccc
Confidence 11 244567777778888888888888888899999999999999999986432211 00 0
Q ss_pred ------CCCCCC---CCCCCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc
Q 017723 219 ------EETKPP---ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (367)
Q Consensus 219 ------~~~~~~---~~~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G 289 (367)
+...++ +.++..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|
T Consensus 1286 ~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G 1365 (1560)
T PTZ00243 1286 TGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG 1365 (1560)
T ss_pred ccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 000000 01123467999999999987666799999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChhhhhhhceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 290 ~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|++||+|+++++.+++|++|++|||||+||+|||||||+++.+++|+++++||++|+++++|.++|+||||+|||+|
T Consensus 1366 ~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G 1443 (1560)
T PTZ00243 1366 EIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGG 1443 (1560)
T ss_pred EEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCc
Confidence 999999999999999999999999999999999999999987789999999999999999999999999999999987
No 17
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.9e-59 Score=458.96 Aligned_cols=361 Identities=19% Similarity=0.224 Sum_probs=290.3
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAK-YIQGYYLSSAREL 80 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~ 80 (367)
.||++.++|++++|+++|++.++.++...+..++.+++.++++++++++++|.++++++..+++.. +++..+.++.++.
T Consensus 109 ~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 188 (574)
T PRK11160 109 AGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKP 188 (574)
T ss_pred HhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 578999999999999999999999998888888888888999999999999999887654444333 3345555555566
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-H
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-V 159 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 159 (367)
.++.++..+++.+.+.|.++|+++||+|+.|+++.+++++..++..+...+..+...+.......+..+...++.++. +
T Consensus 189 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 268 (574)
T PRK11160 189 GQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAG 268 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677788999999999999999999999999999999988887776665555544444444444333332222221 2
Q ss_pred HhCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 160 LLPGKHLPGFVGLSLSYA-LTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
...|.++.|.+.+++.+. .....++..+......++++..+.+|+.++++.+++.+. +..... .+..+.|+|+||
T Consensus 269 ~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~--~~~~~~--~~~~~~i~~~~v 344 (574)
T PRK11160 269 GVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF--PTTSTA--AADQVSLTLNNV 344 (574)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcccCC--CCCCCeEEEEEE
Confidence 234667777766655554 333456667777888999999999999999987554211 111111 123457999999
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+|+|+++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+++++++.+++|++|+||+|||+
T Consensus 345 ~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 424 (574)
T PRK11160 345 SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH 424 (574)
T ss_pred EEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccch
Confidence 99997655569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|++||+|||+++. +.+++++++|++.+++++++++ |+||||++||+|
T Consensus 425 lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g 473 (574)
T PRK11160 425 LFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGG 473 (574)
T ss_pred hhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCC
Confidence 99999999999874 6899999999999999999999 999999999986
No 18
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.1e-59 Score=469.80 Aligned_cols=359 Identities=20% Similarity=0.278 Sum_probs=297.6
Q ss_pred ccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017723 5 DSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMN 84 (367)
Q Consensus 5 ~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
+++++|++++|+ +|++.+++++...+...+..++.+++.++++++++|.++++.+..+++..++...+.++.++..++.
T Consensus 238 ~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 316 (694)
T TIGR03375 238 RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEES 316 (694)
T ss_pred CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999 7999999988777666666777777778888999999988776666666666667777777777777
Q ss_pred hhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHhC
Q 017723 85 GTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IVLLP 162 (367)
Q Consensus 85 ~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 162 (367)
.+..++..+.+.|.++|+++||.++.|+.+.++|++..++..+...+..............+..+..+++.++ ..+..
T Consensus 317 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~ 396 (694)
T TIGR03375 317 MRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISD 396 (694)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7788899999999999999999999999999999998888776665555554444434333333322222222 22234
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEEe
Q 017723 163 GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY 242 (367)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y 242 (367)
|.+++|.+.+++.+...+..++..+...+..++.+..+.+|+.++++.+++.+.. .. .....+..+.|+|+||+|+|
T Consensus 397 g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~~-~~~~~~~~~~I~~~~vsf~Y 473 (694)
T TIGR03375 397 GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--TR-FLHRPRLQGEIEFRNVSFAY 473 (694)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CC-CCCCCCccceEEEEEEEEEe
Confidence 8899998888888888888899999999999999999999999999876543211 11 01011234579999999999
Q ss_pred CCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc
Q 017723 243 RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 322 (367)
Q Consensus 243 ~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~ 322 (367)
+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||+|||++|+|
T Consensus 474 ~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~ 553 (694)
T TIGR03375 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG 553 (694)
T ss_pred CCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh
Confidence 86666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 323 SVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 323 Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||+|||+++. +++++++++|++.++++++|+.||+||||++||+|
T Consensus 554 TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G 599 (694)
T TIGR03375 554 TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599 (694)
T ss_pred hHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCC
Confidence 9999999875 58999999999999999999999999999999987
No 19
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-58 Score=460.05 Aligned_cols=361 Identities=18% Similarity=0.247 Sum_probs=301.1
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.+|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++++|.+++++++.+++..++...+.++.++..
T Consensus 114 ~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 193 (582)
T PRK11176 114 SFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNIS 193 (582)
T ss_pred HHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999988888888888888899999999999999888776666666666667777777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
++..+..+++.+.+.|.++|+++||.++.++.+.++|++..++..+...+..+...+.......+..+...+++++ ..
T Consensus 194 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 273 (582)
T PRK11176 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFP 273 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788889999999999999999999999999999998888777665555554444444444443333322222 12
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
...|.+++|.+.+++.+...+..++..+...+..++++..+.+|+.++++.+++.+.. . .. ..+..+.|+++||+
T Consensus 274 ~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~--~~-~~~~~~~i~~~~vs 348 (582)
T PRK11176 274 SVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--K--RV-IERAKGDIEFRNVT 348 (582)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--C--cC-CCCCCCeEEEEEEE
Confidence 2348889998877777777788888888999999999999999999999865432211 1 11 11233579999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++
T Consensus 349 f~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 349 FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred EecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 99986656799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC--CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~--~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++||+|||+++. +++|++++++|+.+++++++++||+||||++||+|
T Consensus 429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 9999999999863 37999999999999999999999999999999987
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.5e-58 Score=454.63 Aligned_cols=359 Identities=22% Similarity=0.289 Sum_probs=290.4
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.++..+...+..++..+..+++.++++++++|.++++.+..+++..++...+.++.++..
T Consensus 114 ~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~ 193 (592)
T PRK10790 114 SAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIV 193 (592)
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998888888888888888888899999999887665554544444555555555555
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHH-HHHHHHHHHHHHHHH-HHHHH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWL-VLRIETLQNLIILTA-ALLIV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~~ 159 (367)
+...+..++..+++.|.++|+++||.|+.++++.+++.+..++..+...+..+..... ......+..+...++ .+...
T Consensus 194 ~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (592)
T PRK10790 194 RRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF 273 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667788899999999999999999999999999887776665544433332221 112222222221111 11122
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
...|.++.|.+.+++.+...+..++..+...+..++++..+.+|+.++++.++++.. ... . ....++|+|+||+
T Consensus 274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~-~--~~~~~~i~~~~v~ 347 (592)
T PRK10790 274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---NDD-R--PLQSGRIDIDNVS 347 (592)
T ss_pred HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CCc-c--CCCCCeEEEEEEE
Confidence 345888888888888888888889999999999999999999999999976543211 111 1 1134579999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++
T Consensus 348 f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 348 FAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred EEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 999754 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++||+|||+++.+++|++++++|+++++++++++||+||||++||+|
T Consensus 427 F~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g 474 (592)
T PRK10790 427 LADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQG 474 (592)
T ss_pred ccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 999999999988788999999999999999999999999999999987
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7.2e-58 Score=453.80 Aligned_cols=361 Identities=20% Similarity=0.326 Sum_probs=307.1
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
++|++.+.|++++|+++|++.++.++...+..++..++.+++.++++++++|.++++.++..++..++...+.++.++..
T Consensus 103 ~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~ 182 (571)
T TIGR02203 103 SFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRIS 182 (571)
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999888888888899999999999999999988887777777777788888888888
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
++..+..++..+.+.|.++|+++||.++.++++.++|++..++..+...+......+.......+..+...++.++ ..
T Consensus 183 ~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 262 (571)
T TIGR02203 183 KEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQ 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999998888777666555555544444444433333222222 22
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
+..|.+++|.+.++..+...+..++..+......+++++.+.+|+.++++.+++.+. ..... .+..++|+++||+
T Consensus 263 ~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~--~~~~~~i~~~~v~ 337 (571)
T TIGR02203 263 AQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAI--ERARGDVEFRNVT 337 (571)
T ss_pred HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCC--CCCCCeEEEEEEE
Confidence 235888999888888888888899999999999999999999999999976544221 11111 1134579999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|++||+++++++.+++|++++||||+|++
T Consensus 338 f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 417 (571)
T TIGR02203 338 FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL 417 (571)
T ss_pred EEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc
Confidence 99986656699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC--CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~--~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|+|||+|||+++. +.++++++++|+.+++++++.+||+||||++||+|
T Consensus 418 f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g 467 (571)
T TIGR02203 418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENG 467 (571)
T ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCC
Confidence 9999999999874 58999999999999999999999999999999986
No 22
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4e-58 Score=487.65 Aligned_cols=366 Identities=20% Similarity=0.203 Sum_probs=277.8
Q ss_pred ccccc--CChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 2 LFFDS--TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSS--A 77 (367)
Q Consensus 2 ~~f~~--~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~--~ 77 (367)
+||++ +++|++++|+++|++.++.++...+..++..++.+++.++++++++|.+++++++++++.........+. .
T Consensus 915 ~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 994 (1466)
T PTZ00265 915 SFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTAN 994 (1466)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68985 7899999999999999999888888888888888999999999999998877655443332222111111 1
Q ss_pred HHHHhh-------------hhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHH
Q 017723 78 RELMRM-------------NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIE 144 (367)
Q Consensus 78 ~~~~~~-------------~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (367)
++..+. ..+..++....+.|.++|+++||+|+.|+++.++|++..+...+...+..........+..
T Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1466)
T PTZ00265 995 KDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQ 1074 (1466)
T ss_pred HHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1122445678999999999999999999999999999888776655554444444444444
Q ss_pred HHHHHHHHHHHHHH--HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCC
Q 017723 145 TLQNLIILTAALLI--VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETK 222 (367)
Q Consensus 145 ~l~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~ 222 (367)
.+..+...+++++. .+..|.+++|.+..++.+..........+...+..++++..+.+|+.++++.+++.+.......
T Consensus 1075 ~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~ 1154 (1466)
T PTZ00265 1075 SAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGI 1154 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccc
Confidence 43333333322222 2234778888766655443333334455677788899999999999999987543211101100
Q ss_pred CC-CCCCCcceEEEEeeEEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC--------------
Q 017723 223 PP-ASWPSHGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-------------- 286 (367)
Q Consensus 223 ~~-~~~~~~~~I~~~nvsf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-------------- 286 (367)
.. ......+.|+|+||+|+||+. ..++|+|+||+|++|+++||||+||||||||++||+|+|+|
T Consensus 1155 ~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1155 RIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred ccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 00 011234679999999999743 23699999999999999999999999999999999999999
Q ss_pred ----------------------------------------CCceEEECCeecCCCChhhhhhhceEeecCccccccchhh
Q 017723 287 ----------------------------------------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (367)
Q Consensus 287 ----------------------------------------~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~e 326 (367)
++|+|++||+|+++++.+++|++|+||+|||+||+|||||
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIre 1314 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYE 1314 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHH
Confidence 6999999999999999999999999999999999999999
Q ss_pred hcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 327 NLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 327 Ni~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||+++ +++++|++++||+.|++++||.+||+||||+|||+|
T Consensus 1315 NI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G 1356 (1466)
T PTZ00265 1315 NIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYG 1356 (1466)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCC
Confidence 99998 468999999999999999999999999999999987
No 23
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.3e-57 Score=486.94 Aligned_cols=365 Identities=28% Similarity=0.495 Sum_probs=301.2
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
+.||+++++|++++|+++|++.++..++..+..++..++.+++.++++++++|.++++++|++++..++..++.+..++.
T Consensus 973 ~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l 1052 (1490)
T TIGR01271 973 MAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQL 1052 (1490)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999988888888888898999999999887776666666666677777777777
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (367)
.+....+++++.+++.|+++|+.+||+|++++++.+++.+..+...+..........|+......+..+..+.+.++.+
T Consensus 1053 ~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~- 1131 (1490)
T TIGR01271 1053 KQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAI- 1131 (1490)
T ss_pred HHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7777888899999999999999999999999999999999888765555444555566665555544333322222111
Q ss_pred hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCC--------------CCCCCC
Q 017723 161 LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--------------TKPPAS 226 (367)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~--------------~~~~~~ 226 (367)
.......|.++.++.+...+...+..+...+..+...+.|++|+.++++.+++.+...+. ..+++.
T Consensus 1132 ~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1211 (1490)
T TIGR01271 1132 GTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKC 1211 (1490)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCC
Confidence 112234555666677777777777777778889999999999999999876653211110 011223
Q ss_pred CCCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh
Q 017723 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 306 (367)
Q Consensus 227 ~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~ 306 (367)
|+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+ ++|+|++||+|+++++.+++
T Consensus 1212 wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1212 WPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred CCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 55667899999999998766779999999999999999999999999999999999997 79999999999999999999
Q ss_pred hhhceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 307 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 307 r~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|+++++|||||+||+|||||||++..+++|+++|+||++++++++|..+|+||||+|||+|
T Consensus 1291 R~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred HhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 9999999999999999999999987778999999999999999999999999999999987
No 24
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-57 Score=458.35 Aligned_cols=361 Identities=22% Similarity=0.299 Sum_probs=297.6
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.||+++++|++++|+ +|++.+++++...+..++..++.+++.++++++++|.++++++..+++..++...+.++.++..
T Consensus 228 ~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 306 (694)
T TIGR01846 228 GYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRV 306 (694)
T ss_pred HHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999 6999999988776666666666677778889999999988776666666666666666556666
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (367)
++..++.++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+......+.......+..+..+++.++. .
T Consensus 307 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 386 (694)
T TIGR01846 307 EDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHL 386 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66666777889999999999999999999999999999988887776666555555444444444433333322222 2
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
+..|.++.|.+.++..+...+..++..+...+..++++..+++|+.++++.+++.+.. .... .....+.|+++||+
T Consensus 387 v~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~-~~~~~~~i~~~~vs 462 (694)
T TIGR01846 387 VIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA---GLAA-LPELRGAITFENIR 462 (694)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---CCCC-CCCCCCeEEEEEEE
Confidence 2348899998888888888888899999999999999999999999999876543211 1001 11234579999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+++++++.+++|++++||+|||++
T Consensus 463 f~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 463 FRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred EEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence 99986656699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++||+|||+++. +++++++++||+.+++++++.++|+||||++||+|
T Consensus 543 f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 543 FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 9999999999864 68999999999999999999999999999999986
No 25
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-58 Score=419.60 Aligned_cols=358 Identities=19% Similarity=0.268 Sum_probs=290.9
Q ss_pred ccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 017723 5 DSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPT-VIVAKYIQGYYLSSARELMRM 83 (367)
Q Consensus 5 ~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 83 (367)
+..++||+++|++.|++.+|..+-+.+.+.+.+++...+..+.+.+++|++++.+..+ +++...++..+.+..++..++
T Consensus 110 ~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~ 189 (573)
T COG4987 110 LRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAH 189 (573)
T ss_pred HhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3568999999999999999999999999999998888888888889999887665444 344455666666666777777
Q ss_pred hhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hC
Q 017723 84 NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL-LP 162 (367)
Q Consensus 84 ~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 162 (367)
.++.++.+.+++.|.++|..+++.||+++.+.+.+....+...+...+.++...|..+...++..+.++...++... ..
T Consensus 190 l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~ 269 (573)
T COG4987 190 LAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG 269 (573)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 77788889999999999999999999999999999888877777777777777777777666666655533333222 22
Q ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEE
Q 017723 163 -GKHLPGFVGLSLSYALTLSSIQVIMT-RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV 240 (367)
Q Consensus 163 -g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf 240 (367)
|..+......++...+.....+..+. ....++.+...|+.|+.++.+.+++... + ....+ .....++++||||
T Consensus 270 ~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~--~-~~~~~--~~~~~l~~~~vsF 344 (573)
T COG4987 270 AGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF--P-DEQTA--TTGQALELRNVSF 344 (573)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC--C-ccccC--Cccceeeecccee
Confidence 54443223233332244444555555 5667889999999999999886554321 1 11111 1112799999999
Q ss_pred EeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 241 ~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
+||++++++|+|+||++++|||+||+|+|||||||+++++.|.|+|++|+|.++|.++..++.+++|+.+++++|.++||
T Consensus 345 ~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424 (573)
T ss_pred ecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 321 RGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 321 ~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
++|+|||+.++ ++++||++|+++++++|++++.+.|+||||++||+|
T Consensus 425 ~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 425 SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 99999999887 479999999999999999999999999999999998
No 26
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.1e-59 Score=464.65 Aligned_cols=365 Identities=21% Similarity=0.233 Sum_probs=286.2
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++|||.+.+|++.+|+++|++.+++.+...+..+++.+..++.++++.|++.|+++++.++..++..+....+.+.....
T Consensus 119 i~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~ 198 (1228)
T KOG0055|consen 119 IGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKL 198 (1228)
T ss_pred cceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999988777766665555555545555
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 158 (367)
..+..++.++..+...|.+.++|||.+|+.|++..++|.+.++...+...+.............++.........++.
T Consensus 199 t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~ 278 (1228)
T KOG0055|consen 199 TEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGST 278 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 555556666778899999999999999999999999999999887776655433333222222222222222222221
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
.+..+..++|.+...+..+......+......+..+.++.+|+.++++.++..+..+... ... .......++|+|+||
T Consensus 279 li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~~~-~~~~~~~g~ief~nV 356 (1228)
T KOG0055|consen 279 LILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS-KGG-RVLSSIKGEIEFRNV 356 (1228)
T ss_pred HHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc-ccC-CcccccccceEEEEE
Confidence 112234444432222222222222333345556788899999999999998654322211 111 111135678999999
Q ss_pred EEEeCCCC-CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 239 KVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 239 sf~Y~~~~-~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
.|+||..+ .++|+++||+||+|+.+||||+|||||||+++||.|||+|++|+|++||.|+++++.+++|++||.|+|+|
T Consensus 357 ~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 357 CFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred EecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech
Confidence 99998654 36999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 318 ~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
.||++||+|||.++. +++++++++|||+|+.++||..||+||||++||+|
T Consensus 437 vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 437 VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERG 487 (1228)
T ss_pred hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC
Confidence 999999999999985 78999999999999999999999999999999997
No 27
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-56 Score=417.31 Aligned_cols=360 Identities=19% Similarity=0.233 Sum_probs=293.3
Q ss_pred cccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017723 4 FDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRM 83 (367)
Q Consensus 4 f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (367)
-...++|+..+.+++.++.++..+...++.++.+.+..+..++.+++.+|..+++.+...++..+++.....+.++..++
T Consensus 91 ~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~ 170 (559)
T COG4988 91 IAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEK 170 (559)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34578999999999999999999999999999999999999999999999988776666666555555666667777777
Q ss_pred hhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHh
Q 017723 84 NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--VLL 161 (367)
Q Consensus 84 ~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~ 161 (367)
+..+..++.+++.|.++|+.|+|.|++.+...++..+..++.++..+...+..-.....++++..+.+.+++++. -+.
T Consensus 171 ~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll 250 (559)
T COG4988 171 QFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLL 250 (559)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999888887777765544444333333445555544443333222 223
Q ss_pred C-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEE
Q 017723 162 P-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV 240 (367)
Q Consensus 162 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf 240 (367)
. |.++......++....-+..|+..++..++.-..+..+.+++..+++.|.+.+...+ +....+....+|+++|++|
T Consensus 251 ~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~ 328 (559)
T COG4988 251 GEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSF 328 (559)
T ss_pred ccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEE
Confidence 3 455544444455556678889999999999999999999999999987665322111 1011111233566679999
Q ss_pred EeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 241 ~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
+||+++ ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||++.++++.++||+++++|+|+|+||
T Consensus 329 ~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf 407 (559)
T COG4988 329 RYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF 407 (559)
T ss_pred ecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccc
Confidence 998766 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 321 RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 321 ~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|||||||++++ +++||++++|++.+++.+|+.. |+|+||+|||+|
T Consensus 408 ~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G 454 (559)
T COG4988 408 AGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGG 454 (559)
T ss_pred cccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCC
Confidence 999999999885 5899999999999999999999 999999999997
No 28
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.4e-56 Score=438.91 Aligned_cols=361 Identities=17% Similarity=0.249 Sum_probs=290.7
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVM-ASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
+||+++++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.++++++..+++..++...+.++.++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998777666666776655555555555 57999888777666666666677777777766
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--I 158 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~ 158 (367)
.++..+..+++.+.+.|.++|+++||.|+.++++.++|.+..++..+...+.................+..++..++ .
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777889999999999999999999999999999988877666555444444433333222222222221111 2
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
.+..|.+++|.+.++..+...+..++..+...+..++++..+.+|+.++++.+++.+. ..... .+..+.|+++||
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~--~~~~~~I~~~~v 319 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPV--PEGRGELDVNIR 319 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCC--CCCCCcEEEEEE
Confidence 2235888999888888888888888888888899999999999999999986543211 11011 112357999999
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+|+|+++++++|+|+||+|+||++++|||+||||||||+++|+|+|+|++|+|++||+++++++.+++|++++||+|+|+
T Consensus 320 ~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 99998655569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|++|++|||+++ +++++++++++++.+++++++.++|+||||.+||+|
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g 449 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERG 449 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCC
Confidence 9999999999987 468999999999999999999999999999999986
No 29
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.2e-56 Score=440.78 Aligned_cols=364 Identities=22% Similarity=0.312 Sum_probs=295.2
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.+|++.+.|++++|+++|++.+++++...+..++..++.+++.+++++.++|+++++++..+++..++...+.++.++..
T Consensus 107 ~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~ 186 (576)
T TIGR02204 107 SFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLS 186 (576)
T ss_pred HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999988887778788888888888999999999887766555555555666667777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
+...+..++..+.+.|.++|+++||.++.++++.++|++..++..+...+......+.......+..+..+++.++ ..
T Consensus 187 ~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 266 (576)
T TIGR02204 187 RESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHD 266 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788889999999999999999999999999999988887666554444433333333222222222221111 12
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
+..|.++.|.+.++..+...+..++..+...+..+.++..+.+|+.++++.+++.+..... .....+..+.|+++||+
T Consensus 267 v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~ 344 (576)
T TIGR02204 267 VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP--KTLPVPLRGEIEFEQVN 344 (576)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC--ccCCcCCCceEEEEEEE
Confidence 2348888998888888888888899999999999999999999999999765432111001 01111223579999999
Q ss_pred EEeCCCC-CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 240 VRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 240 f~Y~~~~-~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
|+||+++ +++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+++.+++.+++|++++||||+|+
T Consensus 345 f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~ 424 (576)
T TIGR02204 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424 (576)
T ss_pred EECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc
Confidence 9997543 569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|+|||+|||+++. +.++++++++++.++++++++.+|+|+||++||+|
T Consensus 425 lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g 474 (576)
T TIGR02204 425 LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERG 474 (576)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCC
Confidence 99999999999864 57899999999999999999999999999999986
No 30
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.9e-56 Score=440.47 Aligned_cols=362 Identities=17% Similarity=0.218 Sum_probs=294.6
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.+|++.+.|++++|+++|++.+...+...+..++..++.+++.++++++++|+++++++.++++..++...+.++.++..
T Consensus 105 ~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~ 184 (588)
T PRK13657 105 AWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQ 184 (588)
T ss_pred HHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999998877777777777777788888888999999887776666666667777777777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
+...+..+++.+.+.|.++|+++||.|+.++.+.+++++..++..+...+......+.......+..+..++++++ ..
T Consensus 185 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 264 (588)
T PRK13657 185 AAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAAL 264 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999999999999999999999999999888887766655444444433333333332222222222 22
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
+..|.+++|.+.+++.+...+..++..+...+..+..+..+++|+.++++.+++.+.. ..... ..+..+.|+++||+
T Consensus 265 v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~-~~~~~~~I~~~~vs 341 (588)
T PRK13657 265 VQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAID-LGRVKGAVEFDDVS 341 (588)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCC-cCCCCCeEEEEEEE
Confidence 2458899998888888888888888888888889999999999999998764432110 11001 11123479999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+||++ +++|+|+|++++|||+++|||+||||||||+++|+|+|+|++|+|++||+++++++.+++|++|+||||+|++
T Consensus 342 f~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 420 (588)
T PRK13657 342 FSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420 (588)
T ss_pred EEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc
Confidence 999754 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|+|||+|||+++. +++|++++++++.+++++++.++|+|+||.+||+|
T Consensus 421 f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g 469 (588)
T PRK13657 421 FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469 (588)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCC
Confidence 9999999999874 68899999999999999999999999999999986
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9e-55 Score=430.24 Aligned_cols=362 Identities=16% Similarity=0.197 Sum_probs=293.7
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.++..+...+...+..++.+++.+++++.++|.++++++.++++..++...+.++.++..
T Consensus 105 ~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 184 (585)
T TIGR01192 105 SWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQ 184 (585)
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999888887777777777787888889999999988877666777777777777777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
++..+..+++.+.+.|.++|+++||+|+.++.+.+++++..++..+...+..+...........+..+...++.++ ..
T Consensus 185 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~ 264 (585)
T TIGR01192 185 AAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVL 264 (585)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999999999999999999999999999888777665544433333333222222222222222211 12
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
+..|.+++|.+.+++.+...+..++..+...+..+..+..+.+|+.++++.+++.... .. ........+.|+++||+
T Consensus 265 v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~v~ 341 (585)
T TIGR01192 265 VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP--AD-APELPNVKGAVEFRHIT 341 (585)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC--cc-CCCCCCCCCeEEEEEEE
Confidence 2358888998888888888888888888888999999999999999998764432110 11 00011123469999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++. ++|+|+||+|++||+++|||+||||||||+++|+|+|+|++|+|.+||+++++++.+++|++++||+|+|++
T Consensus 342 ~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 342 FEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred EECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 9997543 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++|++|||+++ +++++++++++++.+++++++.++|+||||.+||+|
T Consensus 421 f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~ 469 (585)
T TIGR01192 421 FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERG 469 (585)
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCC
Confidence 999999999987 457899999999999999999999999999999876
No 32
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-56 Score=404.33 Aligned_cols=357 Identities=19% Similarity=0.320 Sum_probs=268.1
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH----HHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVM-ASVTWPVLIVAIPTVIVAKYI----QGYYLSS 76 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~----~~~~~~~ 76 (367)
.|.-++++|+++.-+....+.+. ++...+..+.-.++.+.+..++. ...+|+..++++....+.+.. ..+..+.
T Consensus 308 rwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~ 386 (790)
T KOG0056|consen 308 RWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKA 386 (790)
T ss_pred eeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHH
Confidence 46668899999887777666654 33333333333333344443333 336778877776665555543 2333333
Q ss_pred HHHHHhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 017723 77 ARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAAL 156 (367)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (367)
.++.....++.+ +...|++-+.+|||.|+.|++..++|+++..++++...+....-..++..-+.+.++..++..+
T Consensus 387 rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsl 462 (790)
T KOG0056|consen 387 RRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSL 462 (790)
T ss_pred HHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhh
Confidence 333333333333 3456899999999999999999999999999988765443332222222222222222222111
Q ss_pred H-HHHh-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEE
Q 017723 157 L-IVLL-PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIE 234 (367)
Q Consensus 157 ~-~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 234 (367)
+ .+.+ .+..++|.+..+.+|..++..|+..++..+..++++....++++++++.+++-. +....++-...+|.|+
T Consensus 463 l~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl~~~~G~i~ 539 (790)
T KOG0056|consen 463 LCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPLKVTQGKIE 539 (790)
T ss_pred eeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCccccCCeEE
Confidence 1 1112 277889999999999999999999999999999999999999999998544321 1111111122467899
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEee
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~ 314 (367)
|+||+|.|+|+++ +|+||||+++||+.+|+|||||+||||++++|.||||.++|.|.+||+|++++...++|++||+||
T Consensus 540 fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 540 FSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred EEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 9999999987755 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 315 QEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 315 Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||..||++||..||.+++ .+++||+.+|++.|++||-|..+|+||+|++||+|
T Consensus 619 QDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 619 QDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG 672 (790)
T ss_pred CcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc
Confidence 999999999999999885 68999999999999999999999999999999998
No 33
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-53 Score=418.21 Aligned_cols=353 Identities=16% Similarity=0.158 Sum_probs=278.1
Q ss_pred ChhhHHHhhhcCHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017723 8 PVGRIFTRVSSDMSTMDFDLPS-AISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGT 86 (367)
Q Consensus 8 ~~g~l~~rl~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (367)
+.+...+++++|++.+++.+.. .+..++..++.++ .+++++.++|+++++++...++..++...+.++.++..++..+
T Consensus 96 ~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~ 174 (544)
T TIGR01842 96 RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATE 174 (544)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4467789999999999987766 4444554444443 4467888999888766554444444555555555556666777
Q ss_pred ccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHhCCC
Q 017723 87 TKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IVLLPGK 164 (367)
Q Consensus 87 ~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~ 164 (367)
..+++.+.+.|.++|+++||.|+.++.+.++|++..++..+...+..............+..+..+++.++ .....|.
T Consensus 175 ~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ 254 (544)
T TIGR01842 175 ASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGE 254 (544)
T ss_pred HHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88889999999999999999999999999999988887766555444433333333333322222222212 1223588
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEEeCC
Q 017723 165 HLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRP 244 (367)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~ 244 (367)
+++|.+.+++.+...+..++..+...+..++++..+.+|+.++++.+++... .. .. .+..+.|+++||+|+|++
T Consensus 255 it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~-~~--~~~~~~i~~~~v~~~y~~ 328 (544)
T TIGR01842 255 ITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AM-PL--PEPEGHLSVENVTIVPPG 328 (544)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CC-CC--CCCCCeEEEEEEEEEcCC
Confidence 8999888888888888889999999999999999999999999976543211 11 11 112357999999999976
Q ss_pred CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccch
Q 017723 245 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSV 324 (367)
Q Consensus 245 ~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti 324 (367)
+++++|+|+||+++|||+++|||+||||||||+++|+|+|+|++|+|.+||+++++++.+.+|++++||||+|++|++|+
T Consensus 329 ~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 408 (544)
T TIGR01842 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV 408 (544)
T ss_pred CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence 55569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 325 RTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 325 ~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|||+++. ++++++++++++.++++++++.+|+||||.+||+|
T Consensus 409 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g 452 (544)
T TIGR01842 409 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGG 452 (544)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCc
Confidence 99998654 58999999999999999999999999999999976
No 34
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-53 Score=392.84 Aligned_cols=359 Identities=20% Similarity=0.274 Sum_probs=261.3
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIII-AVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
+||.+..+|++.+.+..-...+...+...+..++..++.+.... .+..-..+..+++.+..+.....+.........+.
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 57889999999999988888787777666655555444333333 22222344444444333333333222222212222
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV- 159 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 159 (367)
.++.+.+.....+.+-|++.+.++||.||.|+++.++|+....++.+...+.......+++.-..+.......+.++..
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~ 282 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSN 282 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445566777889999999999999999999999999888776655443333333332222222111111111111
Q ss_pred -HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 160 -LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 160 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
...+.++.|.+.....+..++..++..++..+..+.++...+..++.+.+.... .. +. +.+.....++|+|+||
T Consensus 283 gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~-i~--~~--~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 283 GIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED-IQ--EA--ALPIELFGGSIEFDDV 357 (591)
T ss_pred hhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh-hh--hc--cCCcccCCCcEEEEee
Confidence 123667788887777888888889888888888888887777776655432111 10 11 1111124567999999
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+|.|+|.++ +|+++||+||+||++||||+|||||||++++|+||++ ++|+|++||+|+++++.+.+|+.|||||||..
T Consensus 358 ~f~y~~k~~-iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~ 435 (591)
T KOG0057|consen 358 HFSYGPKRK-VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV 435 (591)
T ss_pred EEEeCCCCc-eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc
Confidence 999986654 9999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||++||.+||.++. .+++||+.++||++++||.+.+||+||+|.+||+|
T Consensus 436 LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG 485 (591)
T KOG0057|consen 436 LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERG 485 (591)
T ss_pred ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcc
Confidence 99999999999874 68999999999999999999999999999999998
No 35
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.7e-52 Score=410.45 Aligned_cols=357 Identities=16% Similarity=0.147 Sum_probs=272.7
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.||+++++|++++|+++|++.++.++.. +..++..++.+++.++++++++|.++++++..+++..++...+.++.++..
T Consensus 102 ~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~ 180 (555)
T TIGR01194 102 EEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFF 180 (555)
T ss_pred HHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999988764 566777778888888999999999988776655555555555555555556
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchH--HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMD--MFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (367)
++.++..+++++.+.|.++|++++|+++.++ ...+++.+..++..+...+..............+..+...+.. +..
T Consensus 181 ~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 259 (555)
T TIGR01194 181 HAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCAL-FAA 259 (555)
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 6666777889999999999999999999854 4456666666655544333222222111111211111111111 111
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCC--CCCCCC---CCCCCcceEE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAII--EETKPP---ASWPSHGRIE 234 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~I~ 234 (367)
...+.++.|.+.+++.+...+..++..+......++++..+++|+.++++.+++++... +..... ......+.|+
T Consensus 260 ~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 339 (555)
T TIGR01194 260 AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339 (555)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEE
Confidence 12266788888888888888888999999999999999999999999976422211100 000000 0011235799
Q ss_pred EEeeEEEeCCC---CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 235 LEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 235 ~~nvsf~Y~~~---~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
++||+|+|++. ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||.++++++.+++|++++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 419 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc
Confidence 99999999753 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCc
Q 017723 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSS 362 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~ 362 (367)
+|+||+++|++|+++|+. +++++++++++++.+++++++..+|+||||.
T Consensus 420 ~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 468 (555)
T TIGR01194 420 AIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT 468 (555)
T ss_pred EEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc
Confidence 999999999999999963 4578999999999999999999999999986
No 36
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.5e-52 Score=442.34 Aligned_cols=362 Identities=14% Similarity=0.175 Sum_probs=283.0
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+.++.|++.+|+++|++.++..+...+..++..++.+++.++++++++|.++++++.++++..++...+.++.+...
T Consensus 146 ~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~ 225 (1466)
T PTZ00265 146 QFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINK 225 (1466)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998877777777776677777766666
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (367)
+...+..++..+.+.|.++|+++||+|+.|+++.++|++..+...+...+.............++..+..++++++. .
T Consensus 226 ~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~l 305 (1466)
T PTZ00265 226 KTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRI 305 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677899999999999999999999999999999887777766555444444433333333222222222221 1
Q ss_pred HhCC--------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcc
Q 017723 160 LLPG--------KHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHG 231 (367)
Q Consensus 160 ~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+..| .+++|.+.+++...+.....+..+...+..++.+..|++|+.++++.+++.+. ...... .+..+
T Consensus 306 v~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~--~~~~~~--~~~~~ 381 (1466)
T PTZ00265 306 IISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVEN--NDDGKK--LKDIK 381 (1466)
T ss_pred HHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCCcc--CCCCC
Confidence 1222 24455444333322222223334455667889999999999999987654221 111011 11223
Q ss_pred eEEEEeeEEEeCCCC-CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE-CCeecCCCChhhhhhh
Q 017723 232 RIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-DGLDICSMGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~-~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~-~g~~i~~~~~~~~r~~ 309 (367)
.|+|+||+|+|+..+ .++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++ ||+++++++.+++|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 799999999997542 35999999999999999999999999999999999999999999999 5799999999999999
Q ss_pred ceEeecCccccccchhhhcCCCC---------------------------------------------------------
Q 017723 310 LSIIPQEPTLFRGSVRTNLDPLG--------------------------------------------------------- 332 (367)
Q Consensus 310 i~~V~Q~~~lf~~Ti~eNi~~~~--------------------------------------------------------- 332 (367)
|+||+|+|+||++||+|||.++.
T Consensus 462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 99999999999999999998641
Q ss_pred -CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 333 -MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 333 -~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+++++++++||+.+++++|+..||+||||.+|++|
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g 577 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA 577 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC
Confidence 24678999999999999999999999999999976
No 37
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-51 Score=365.10 Aligned_cols=357 Identities=19% Similarity=0.273 Sum_probs=272.1
Q ss_pred ccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAV-MASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 3 ~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
|.-++++|.+...+..-..-++..+...+...+-.++-+....++ ...++|+.+++++..+.++.++......-.-...
T Consensus 32 fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~r 111 (497)
T COG5265 32 FHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFR 111 (497)
T ss_pred hhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHH
Confidence 344667777766665555555555544444444334434444333 3447788877766666666555433222222233
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--- 158 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 158 (367)
+..+++.++.++...|.+-+.+++|.|+.|+++..+|++..+.+.+...+......++++ .+..++......+
T Consensus 112 r~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~----gQ~~I~~~~l~~~m~~ 187 (497)
T COG5265 112 RLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNF----GQTAIFSTGLRVMMTM 187 (497)
T ss_pred HhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhh
Confidence 344456677788899999999999999999999999999998888776654444444433 2333322221111
Q ss_pred ---HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCC-CCcceEE
Q 017723 159 ---VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASW-PSHGRIE 234 (367)
Q Consensus 159 ---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~ 234 (367)
-+..|.++.|.+...-.++.+++.|+..++..+..+.++....++..++++.+.+... .... ++-+ -..+.+.
T Consensus 188 s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d--~pda-~~L~~~~~g~v~ 264 (497)
T COG5265 188 SALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSD--APDA-PPLWPVRLGAVA 264 (497)
T ss_pred cHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhcc--CCCC-ccccccccceEE
Confidence 1223778899888888888999999999999999999999999999999876543211 1111 1112 2356799
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEee
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~ 314 (367)
|+||+|.|.++.+ +|+++||++++|+++||||+||+||||++++|.||||+++|.|.+||+|+++...+.+|+.||.||
T Consensus 265 F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VP 343 (497)
T COG5265 265 FINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343 (497)
T ss_pred EEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCc
Confidence 9999999987755 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 315 QEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 315 Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||..||++|+..||.+++ .+++||++.|++.|++++||..+|+||||.|||+|
T Consensus 344 QDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 344 QDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred ccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 999999999999999885 68999999999999999999999999999999997
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.1e-49 Score=419.73 Aligned_cols=346 Identities=17% Similarity=0.224 Sum_probs=253.1
Q ss_pred ccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMAS-VTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 3 ~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+|++.++|++++++++|++.+++... .+..+....+.+++++++++. +.|. +++.+++++++..+...+.++.++..
T Consensus 391 ~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~~lg~~-~l~~~~v~~l~~pl~~~~~~~~~~~~ 468 (1495)
T PLN03232 391 ARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQQLGVA-SLFGSLILFLLIPLQTLIVRKMRKLT 468 (1495)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999998763 444444444444443333322 1111 11111112222223444455556666
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLL 161 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (367)
++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+......+..........++..+......+.
T Consensus 469 ~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~ 548 (1495)
T PLN03232 469 KEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLL 548 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666777889999999999999999999999999998877766555444333333222222221112111111112223
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEE
Q 017723 162 PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 241 (367)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~ 241 (367)
.+.++++.+.+++.+...+..++..++..+..+.++..+++|+.++++.+++... .. .+. .+..+.|+++||+|+
T Consensus 549 ~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~---~~-~~~-~~~~~~I~~~~vsF~ 623 (1495)
T PLN03232 549 GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA---QN-PPL-QPGAPAISIKNGYFS 623 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cc-CCc-CCCCCcEEEEeeEEE
Confidence 4778888888888777788888888899999999999999999999976543211 10 010 112346999999999
Q ss_pred eCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 242 YRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 242 Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
|++. ++++|+|+||+|++||+++|||+||||||||+++|+|+|+|++|.+. .+|++|+||+|+|+||
T Consensus 624 y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 624 WDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIF 691 (1495)
T ss_pred cCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccc
Confidence 9753 35699999999999999999999999999999999999999998763 3577999999999999
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 321 ~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|||||||+++.++++|++++|++.|+++++++.||+|+||+|||+|
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G 738 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC
Confidence 99999999998888999999999999999999999999999999997
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-48 Score=418.96 Aligned_cols=347 Identities=17% Similarity=0.217 Sum_probs=253.3
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.++++.++|++++++++|++.++.+... +..++...+.+++++++++..-...+++.++++++...+...+.++.++..
T Consensus 390 ~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~ 468 (1622)
T PLN03130 390 EGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLT 468 (1622)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999988743 444554544444444444332112222222222333333444555555556
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLL 161 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (367)
++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+......+..........++..+......+.
T Consensus 469 ~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~ 548 (1622)
T PLN03130 469 KEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLL 548 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666777888999999999999999999999999998877665544333322222222221111111111111112223
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEE
Q 017723 162 PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 241 (367)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~ 241 (367)
.+.++++.+.+++.+...+..++..++..+..+.++.++++|+.++++.++..+. .. ++.. +..+.|+++||+|+
T Consensus 549 ~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~---~~-~~~~-~~~~~I~~~nvsf~ 623 (1622)
T PLN03130 549 GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL---PN-PPLE-PGLPAISIKNGYFS 623 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cC-Cccc-CCCCceEEEeeEEE
Confidence 4778888877777777777778888888899999999999999999976443211 00 0100 12346999999999
Q ss_pred eCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC-ceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 242 YRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 242 Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~-G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|++. ++++|+|+||+|++||+++|||+||||||||+++|+|+|+|++ |+|.+ |++|+||+|+|+|
T Consensus 624 y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~L 690 (1622)
T PLN03130 624 WDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWI 690 (1622)
T ss_pred ccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCcccc
Confidence 9753 3569999999999999999999999999999999999999999 99985 4589999999999
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|+|||||||+++.+.+++++++|++.|+|+++++.||+|+||+|||+|
T Consensus 691 fngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G 738 (1622)
T PLN03130 691 FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERG 738 (1622)
T ss_pred CCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCC
Confidence 999999999998888999999999999999999999999999999997
No 40
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.2e-49 Score=358.06 Aligned_cols=342 Identities=17% Similarity=0.197 Sum_probs=257.6
Q ss_pred hcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccHHH
Q 017723 17 SSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPT---VIVAKYIQGYYLSSARELMRMNGTTKAPIVN 93 (367)
Q Consensus 17 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (367)
-+|.+.++.|+...-...+.-.=.+-+.+.++|.+++++.++++.- ++.+.++..+..+ +-.++..+...+.+.
T Consensus 123 LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~ 199 (580)
T COG4618 123 LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATR---KPLKEASEASIRANQ 199 (580)
T ss_pred hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHH
Confidence 3577888777654322222222224455667777888776554332 2233334333333 233344445566778
Q ss_pred HHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHH-hCCCCCchHHH
Q 017723 94 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL-IVL-LPGKHLPGFVG 171 (367)
Q Consensus 94 ~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~-~~g~~~~~~~~ 171 (367)
....+.++.++|++.|+.....++|.+....+.....+.......+......+-++....+..+ .++ ..|.+++|++.
T Consensus 200 ~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mI 279 (580)
T COG4618 200 LADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMI 279 (580)
T ss_pred HHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhh
Confidence 8899999999999999999999999988887777665554444444444444444443333322 122 34888998776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEEeCCCCCccee
Q 017723 172 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 251 (367)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~L~ 251 (367)
+....+.....++......|.++..++.|++|+.++++..+.... .- +.+ ..++.+.++++++.-|+.++++|+
T Consensus 280 A~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~m--~LP-~P~g~L~Ve~l~~~PPg~~~pil~ 353 (580)
T COG4618 280 AGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---RM--PLP-APQGALSVERLTAAPPGQKKPILK 353 (580)
T ss_pred HHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---CC--CCC-CCCceeeEeeeeecCCCCCCccee
Confidence 655545555557777778889999999999999999975443211 11 111 235789999999988777778999
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcC-C
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-P 330 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~-~ 330 (367)
++||++++||-++||||||||||||.++|.|.++|.+|.|.+||-|+++++++.+-++|||.|||..||+|||+|||+ |
T Consensus 354 ~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf 433 (580)
T COG4618 354 GISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARF 433 (580)
T ss_pred cceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 331 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 331 ~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
.++.++|+|.+|++.|+.||.|.+||+||||.|||+|
T Consensus 434 ~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G 470 (580)
T COG4618 434 GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470 (580)
T ss_pred cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCC
Confidence 4588999999999999999999999999999999987
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.7e-46 Score=367.91 Aligned_cols=344 Identities=15% Similarity=0.125 Sum_probs=249.0
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.++..+.. +..++.+++.+++.++++++++|.+++++++.+++..++..++.++.++..
T Consensus 97 ~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 175 (547)
T PRK10522 97 ERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHM 175 (547)
T ss_pred HHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876654 566777888888888999999999988877666666666666666666666
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCch---HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMM---DMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (367)
++..+..+++.+.+.|.++|+++++ ++.+ +.+.+++++..++..+...+..............+. ....+++++.
T Consensus 176 ~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 253 (547)
T PRK10522 176 ATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMM-LGAIGLVFYM 253 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6667788899999999999999996 4433 345666666555544433222221111111111111 1111111111
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
....+....+....+..+...+..++..+...+..++.+..+.+|+.++++.+++.+. +. ..+ .+..+.|+++||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~-~~~--~~~~~~i~~~~v 328 (547)
T PRK10522 254 ANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PR-PQA--FPDWQTLELRNV 328 (547)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--cc-ccc--cCcCceEEEEEE
Confidence 1001112222222233333335567777888888999999999999998764432111 01 111 111247999999
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+++++++.+++|++++||+|||+
T Consensus 329 ~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 407 (547)
T PRK10522 329 TFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH 407 (547)
T ss_pred EEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChh
Confidence 9999744 459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 319 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 319 lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++|++|| +.+.++++++++++.+++.+++.. |+|
T Consensus 408 lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 408 LFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred HHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-ccc
Confidence 999999999 345788899999999999988764 544
No 42
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-44 Score=366.51 Aligned_cols=344 Identities=18% Similarity=0.245 Sum_probs=264.4
Q ss_pred cCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017723 6 STPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMAS-VTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMN 84 (367)
Q Consensus 6 ~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
+.+.|+++|-++.|++.++++....-..+. +-+.+++++.+++. +.|.. ++.+.++++++.+.....++.++.++..
T Consensus 295 ~~t~G~ivNlms~D~~ri~~~~~~~h~~w~-~Plqi~~~l~lLy~~LG~sa-~~G~~~~il~~p~n~~~a~~~~~~q~~~ 372 (1381)
T KOG0054|consen 295 ETTVGEIVNLMSVDAQRLSDAACFLHLLWS-APLQIILALYLLYGLLGPSA-LAGVAVMVLLIPLNSFLAKKIAKFQKRL 372 (1381)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999988765544343 33334444443333 44433 4444445555566666667777777777
Q ss_pred hhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 017723 85 GTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLLP-G 163 (367)
Q Consensus 85 ~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g 163 (367)
.+.+.+......|.++||++||.|++|+.|.++.++..++..+...+..-..+...+.......++.++..+...... +
T Consensus 373 m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~ 452 (1381)
T KOG0054|consen 373 MKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGN 452 (1381)
T ss_pred hhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 778888899999999999999999999999999988877766665554444444444333333333333222222122 4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEEeC
Q 017723 164 KHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYR 243 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~ 243 (367)
..++...++++++...+..++..++..+..+.++.+|.+|+.+++..++..+..... ....+....|+++|.+|+|+
T Consensus 453 ~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~ 529 (1381)
T KOG0054|consen 453 LLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWD 529 (1381)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecC
Confidence 455556666777777778888889999999999999999999999875543321111 01112344699999999997
Q ss_pred CC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc
Q 017723 244 PN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 322 (367)
Q Consensus 244 ~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~ 322 (367)
+. +++.|+||||+|++|+.+||||+.|||||||+..|+|.++..+|+|.++| .++||||+||||+|
T Consensus 530 ~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 530 SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNG 596 (1381)
T ss_pred CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhCC
Confidence 53 44599999999999999999999999999999999999999999999999 59999999999999
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 323 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 323 Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||||||.++.+.++++++++++.|+|.++++.||.|=.|.|||+|
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG 641 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERG 641 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCc
Confidence 999999999999999999999999999999999999999999998
No 43
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.1e-44 Score=358.24 Aligned_cols=351 Identities=11% Similarity=0.032 Sum_probs=273.2
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMAS-VTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
.|||+ ++|++.+|+++|++.+...+...+..++..++.+++.++.++. .+|.++++++...++..++.+++.++.++.
T Consensus 188 ~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~ 266 (659)
T TIGR00954 188 SNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKL 266 (659)
T ss_pred ccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHH
Confidence 35665 7899999999999999999999999999999988888887776 999998877777788888888888888888
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHH-
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNL--IILTAALL- 157 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~- 157 (367)
.++..+..+++.+.+.|.++|+++||.|+.++.+.+++++..++..+...+......+......++... ..++.++.
T Consensus 267 ~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g 346 (659)
T TIGR00954 267 TVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVS 346 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999888887777666666555555544444321 11111111
Q ss_pred H-HHh-C----CCCCchHHHH-HHHH---HHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCC-------CCCC-
Q 017723 158 I-VLL-P----GKHLPGFVGL-SLSY---ALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP-------AIIE- 219 (367)
Q Consensus 158 ~-~~~-~----g~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~-------~~~~- 219 (367)
. +.. . |.++.|.... ++.+ ...+..++..+......++++..+.+|+.++++.+++.. ...+
T Consensus 347 ~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~ 426 (659)
T TIGR00954 347 IPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEI 426 (659)
T ss_pred HHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 1 111 1 4566665433 4443 345577778888889999999999999999986432110 0000
Q ss_pred CCC---------C---CCCCCCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC
Q 017723 220 ETK---------P---PASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE 287 (367)
Q Consensus 220 ~~~---------~---~~~~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~ 287 (367)
... . .......+.|+++||+|+|+++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~ 505 (659)
T TIGR00954 427 ESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY 505 (659)
T ss_pred cccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 000 0 0000123469999999999744 35999999999999999999999999999999999999999
Q ss_pred CceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcCCCC--------CCCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 288 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--------MYSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 288 ~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~--------~~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+|+|.+++ |++++||+|+|++|++|++|||.++. +.++++++++++.++++++++. |.||
T Consensus 506 ~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~ 573 (659)
T TIGR00954 506 GGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGW 573 (659)
T ss_pred CCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCc
Confidence 99999864 56899999999999999999997642 3568899999999999999988 9999
Q ss_pred CCcCCCC
Q 017723 360 DSSGNSK 366 (367)
Q Consensus 360 dt~i~e~ 366 (367)
||..++.
T Consensus 574 ~~~~~~~ 580 (659)
T TIGR00954 574 SAVQDWM 580 (659)
T ss_pred ccccccc
Confidence 9987643
No 44
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.7e-43 Score=377.08 Aligned_cols=348 Identities=17% Similarity=0.209 Sum_probs=248.3
Q ss_pred ccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017723 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMR 82 (367)
Q Consensus 3 ~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (367)
++++.++|++++++++|++.+..... .+..+....+.+++++++++..-.+.+++.+.++++...+...+.++.++.++
T Consensus 408 ~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 486 (1522)
T TIGR00957 408 ARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQV 486 (1522)
T ss_pred hcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999987553 44455555554454444443322222222222223333344444455555555
Q ss_pred hhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 017723 83 MNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAAL-LIVLL 161 (367)
Q Consensus 83 ~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 161 (367)
+..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+.......... ......++..++.+ ...+.
T Consensus 487 ~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~ 565 (1522)
T TIGR00957 487 AHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTF-TWVCTPFLVALITFAVYVTV 565 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 66667778889999999999999999999999999988776655543332222222111 11111111111111 11112
Q ss_pred C--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 162 P--GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 162 ~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
. +.++.+....++.+...+..++..++..+..+.++..+.+|+.++++.+++++...+.. .......+.|+++|++
T Consensus 566 ~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~ 643 (1522)
T TIGR00957 566 DENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERR--TIKPGEGNSITVHNAT 643 (1522)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc--ccCCCCCCcEEEEEeE
Confidence 2 34555655555665666777888888899999999999999999997654322110000 0000112369999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++.+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+|| +++||+|+|++
T Consensus 644 ~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l 710 (1522)
T TIGR00957 644 FTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWI 710 (1522)
T ss_pred EEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccc
Confidence 99976555699999999999999999999999999999999999999999999997 69999999999
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++||+|||.++.+.++++++++++.|++.+++..+|+|++|.+||+|
T Consensus 711 ~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g 758 (1522)
T TIGR00957 711 QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG 758 (1522)
T ss_pred cCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC
Confidence 999999999987777888999999999999999999999999999986
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.5e-41 Score=359.42 Aligned_cols=342 Identities=15% Similarity=0.203 Sum_probs=247.5
Q ss_pred ccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017723 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMR 82 (367)
Q Consensus 3 ~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (367)
.+++.++|++++++++|++.+...+.... .+....+.+++++++++....+.+++.+.++++...+..++.++..+.++
T Consensus 172 ~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~-~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~ 250 (1490)
T TIGR01271 172 VLDKISTGQLVSLLSNNLNKFDEGLALAH-FVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRD 250 (1490)
T ss_pred HhcCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999998766543 34344444455555554444344444444444555555566666666666
Q ss_pred hhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017723 83 MNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLLP 162 (367)
Q Consensus 83 ~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 162 (367)
......++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+......+..........++.++..+ .+.+.
T Consensus 251 ~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~y~~~ 329 (1490)
T TIGR01271 251 KRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVV-PYALI 329 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 67778888999999999999999999999999999888777665554443332222222111111111111111 11122
Q ss_pred CCCCchHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEE
Q 017723 163 GKHLPGFVGLSLSYALTLSSIQ-VIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 241 (367)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~ 241 (367)
+..+.+.+++++++...+..++ ..++..+..+.++.++++||.+++..++.... .. . .....|+++|++|.
T Consensus 330 ~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~---~~--~---~~~~~i~~~~~~f~ 401 (1490)
T TIGR01271 330 KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL---EY--N---LTTTEVEMVNVTAS 401 (1490)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc---cc--c---CCCCceEEecceEe
Confidence 2345555555555555554454 46788888999999999999999976442111 00 0 01235899999999
Q ss_pred eCCC--------------------------------CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc
Q 017723 242 YRPN--------------------------------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (367)
Q Consensus 242 Y~~~--------------------------------~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G 289 (367)
|+.. .+++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G 481 (1490)
T TIGR01271 402 WDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG 481 (1490)
T ss_pred cCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 9521 13589999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChhhhhhhceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 290 ~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|.++| +++||+|+|++|++||+|||.++.+.+++++.++++.|++.+++..+|+|.+|.+||+|
T Consensus 482 ~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g 546 (1490)
T TIGR01271 482 KIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546 (1490)
T ss_pred eEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcC
Confidence 999998 59999999999999999999987667778899999999999999999999999999986
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.7e-39 Score=346.68 Aligned_cols=347 Identities=18% Similarity=0.226 Sum_probs=257.3
Q ss_pred CChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017723 7 TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGT 86 (367)
Q Consensus 7 ~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (367)
.++|+++|.+++|++.+..++... ..++...+.+++++++++.+-.+.+++.+.++++...+..++.++.....++..+
T Consensus 341 ~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~ 419 (1560)
T PTZ00243 341 MNTGRIINMMSTDVERINSFMQYC-MYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAK 419 (1560)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999987554 4455555566666666655544455555555555556666667766666777777
Q ss_pred ccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 017723 87 TKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLLPGKHL 166 (367)
Q Consensus 87 ~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 166 (367)
..++..+...|.++|+++||.+++|+.+.+++++..++..+...+......+..++......++.++..+...+..+.++
T Consensus 420 ~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt 499 (1560)
T PTZ00243 420 AADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELT 499 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 88888999999999999999999999999999987776665544433333333322222222222222222222346788
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCC----CCC---------CC-C----------
Q 017723 167 PGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPA----IIE---------ET-K---------- 222 (367)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~----~~~---------~~-~---------- 222 (367)
++.+++++++...+..++..++..+..+.++.+|++||.++++.++.... ..+ .. .
T Consensus 500 ~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1560)
T PTZ00243 500 PEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDV 579 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccc
Confidence 88888888888888888888999999999999999999999976431100 000 00 0
Q ss_pred ----C---------------------------CCCCCCcceEEEEeeEEEeCC---------------------------
Q 017723 223 ----P---------------------------PASWPSHGRIELEDLKVRYRP--------------------------- 244 (367)
Q Consensus 223 ----~---------------------------~~~~~~~~~I~~~nvsf~Y~~--------------------------- 244 (367)
+ +......+.+.++|++|.++.
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1560)
T PTZ00243 580 TAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKT 659 (1560)
T ss_pred cccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 000001235778888886531
Q ss_pred -----------CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 245 -----------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 245 -----------~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++ ++|+||
T Consensus 660 ~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv 726 (1560)
T PTZ00243 660 PKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYV 726 (1560)
T ss_pred cccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEE
Confidence 12348999999999999999999999999999999999999999999864 479999
Q ss_pred ecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 314 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 314 ~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|+|++|++|++|||.++.+.+++++.++++.|+++++++.+|+|++|.+|++|
T Consensus 727 ~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g 780 (1560)
T PTZ00243 727 PQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKG 780 (1560)
T ss_pred eCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCC
Confidence 999999999999999887666777899999999999999999999999999875
No 47
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=268.87 Aligned_cols=337 Identities=19% Similarity=0.216 Sum_probs=242.0
Q ss_pred cccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017723 4 FDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRM 83 (367)
Q Consensus 4 f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (367)
+++...+.++.++++|+.++...+ ..++.+.++++..+++++++.++|+++.+++++.+++..+.....+.+..+.+..
T Consensus 99 ier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~a 177 (546)
T COG4615 99 IERLGSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAA 177 (546)
T ss_pred HHHhcccchhhhhcccccceeehH-hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998444 4566788888889999999999999988777777777777777777778888888
Q ss_pred hhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 84 NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFH-SNAATEWLVLRIETLQNLIILTAALLIV--L 160 (367)
Q Consensus 84 ~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~ 160 (367)
.++.+.++.+..+..+.|.++++++....+.. +.+.+....+...+ ....+-.......+.+.+.+.+++...+ .
T Consensus 178 are~ed~Lq~~y~~il~G~KEL~l~r~R~~~~--h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal 255 (546)
T COG4615 178 ARETEDKLQNDYQTILEGRKELTLNRERAEYV--HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLAL 255 (546)
T ss_pred HHhhHHHHHHHHHHHhcchhhheechHHHHHH--HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999986443322 22222222222222 1111111111111222222222222212 1
Q ss_pred hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEE
Q 017723 161 LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV 240 (367)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf 240 (367)
..++-+.....+++...+.+..++.++......+..+.+|++|+.++-..|....- +..+.. |.-..|+++||.|
T Consensus 256 ~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~--~~~q~~---p~~~~lelrnvrf 330 (546)
T COG4615 256 SLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF--PRPQAF---PDWKTLELRNVRF 330 (546)
T ss_pred hhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC--CCCCcC---Ccccceeeeeeee
Confidence 22444433333333344566777777888888999999999999987654332211 111111 2234699999999
Q ss_pred EeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 241 ~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
+|+++. .-+..||++|++||.+.|+|.+||||||+++||.|+|.|++|+|++||.++..-+++++|+.++.|+-|.|||
T Consensus 331 ay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF 409 (546)
T COG4615 331 AYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409 (546)
T ss_pred ccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhh
Confidence 998765 4789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHcCccHHHh
Q 017723 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 321 ~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~ 353 (367)
+.++-- -..++++.+.+.++.-.+.....
T Consensus 410 ~~ll~~----e~~as~q~i~~~LqrLel~~kts 438 (546)
T COG4615 410 DQLLGP----EGKASPQLIEKWLQRLELAHKTS 438 (546)
T ss_pred HhhhCC----ccCCChHHHHHHHHHHHHhhhhc
Confidence 987521 12368888888877766665544
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.98 E-value=4.1e-32 Score=242.78 Aligned_cols=136 Identities=40% Similarity=0.706 Sum_probs=127.0
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
+.|+++|++++|++..+++|+|+||+|++||+++|+|+||||||||+++|.|+++ ++|+|++||.++..++...+|+.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3699999999997555569999999999999999999999999999999999998 789999999999999999999999
Q ss_pred eEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 311 ~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+||||+|.+|++|+++|+.+....++++++++++.+++.+++..+|.+|||+++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 999999999999999999755456789999999999999999999999999999875
No 49
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=9.9e-29 Score=215.89 Aligned_cols=134 Identities=54% Similarity=0.972 Sum_probs=123.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+...+.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754446999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
|++|++.+|++|++||+.+....+.+++.++++..++.+++..+|.|+++.+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 135 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEE 135 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhccccccccccc
Confidence 999999999999999998655567788999999999999999999999987654
No 50
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=2.1e-29 Score=203.19 Aligned_cols=126 Identities=24% Similarity=0.379 Sum_probs=113.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh---hhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 309 (367)
|+|+||+.+|+.+ +++|+|+||+|++||.+.++||||||||||+|||.+...|+.|+|.++|+|+..+..+ .+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999876 6699999999999999999999999999999999999999999999999999988765 67999
Q ss_pred ceEeecCcccc-ccchhhhcCCCCC-------CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 310 LSIIPQEPTLF-RGSVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 310 i~~V~Q~~~lf-~~Ti~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|+||..|. +-|+.||+++.-. .-.+++.++|+.++|.+-...||..|
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~L 138 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL 138 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcccc
Confidence 99999999975 5599999986321 12357888999999999999999865
No 51
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.96 E-value=3.4e-26 Score=218.20 Aligned_cols=331 Identities=17% Similarity=0.142 Sum_probs=220.3
Q ss_pred HhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 017723 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPV---------------LIVAIPTVIVAKYIQGYYLSSAR 78 (367)
Q Consensus 14 ~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------------~l~~~~~~~~~~~~~~~~~~~~~ 78 (367)
.|+..|+..+-+........++.++++++....+++-.+-.+ ...++...+...++...+.++..
T Consensus 152 QRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li 231 (604)
T COG4178 152 QRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLI 231 (604)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccc
Confidence 688888888776666666777777777777666666433322 11111112222333444444444
Q ss_pred HHHhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Q 017723 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATE---WLVLRIETLQNLIILTAA 155 (367)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 155 (367)
...-+....++.+-..+.-.-++.+.|-.++.|+.+.++.++.+..-...+.+...... |.......+..++-.++.
T Consensus 232 ~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ 311 (604)
T COG4178 232 RLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIA 311 (604)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhc
Confidence 44444444556666667777788899999999998877776665554443333222222 222222222111111111
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCC--CCCCCCCCCCC-CCC--CCCc
Q 017723 156 LLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPP--EPPAIIEETKP-PAS--WPSH 230 (367)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~--~~~~~~~~~~~-~~~--~~~~ 230 (367)
.-.+..|.++.|.++.....+..+...+..+...+..+...++...|+.++...-+ +.+...+.... ... ....
T Consensus 312 -ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 390 (604)
T COG4178 312 -APRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNAD 390 (604)
T ss_pred -cHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccccccccccc
Confidence 11234577887777666666666666777777788888999999999998873211 10110011100 000 0014
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..|.++|++..-|++. ..++++|+++++|+.+-|.|+||||||||++.|+|++|.-+|+|-.-. -.++
T Consensus 391 ~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~ 458 (604)
T COG4178 391 HGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSAL 458 (604)
T ss_pred ceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCce
Confidence 5799999999987665 599999999999999999999999999999999999999999987641 0258
Q ss_pred eEeecCccccccchhhhcCCCC---CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 311 SIIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 311 ~~V~Q~~~lf~~Ti~eNi~~~~---~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
-|+||.|++-.||+||-|++.. +.+|+++.++|.+|+|.+++.++.+
T Consensus 459 lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 459 LFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred EEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 9999999999999999998642 3799999999999999999998754
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=3.1e-28 Score=217.23 Aligned_cols=138 Identities=46% Similarity=0.742 Sum_probs=124.7
Q ss_pred CcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhh
Q 017723 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 308 (367)
Q Consensus 229 ~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 308 (367)
..+.|+++|++++|++..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45689999999999754345999999999999999999999999999999999999999999999999999998889999
Q ss_pred hceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCC
Q 017723 309 KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSK 366 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~ 366 (367)
.++||+|++.+|++|++||+.+.....+++++++++.+++.+++..+|.|+++.+++.
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~ 153 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG 153 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccC
Confidence 9999999999999999999975433456778899999999999999999999987653
No 53
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=215.35 Aligned_cols=124 Identities=27% Similarity=0.423 Sum_probs=113.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++||+.+|.+.. +++++|++|+.||.++|+|||||||||++++|+|+.+|++|+|.+||.+++++++++ ++|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999996433 999999999999999999999999999999999999999999999999999998876 8999
Q ss_pred EeecCcccccc-chhhhcCCCCC-------CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+|+|++.||+- |++|||+++-. ..++++.++++..++.+.+++.|..|
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 99999999976 99999987521 23678999999999999999999866
No 54
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=5.4e-28 Score=203.76 Aligned_cols=125 Identities=32% Similarity=0.479 Sum_probs=111.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+|+|||++|. ...+++|+||+|++||.+.++|||||||||++++|.|+.+|++|+|++||.++++++.-.+|++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 78999999996 3349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCccccc-cchhhhcCCCC-------CCCHHHHHHHHHHcCcc--HHHhhCcccc
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG-------MYSDNEIWEAMEKCQLK--ATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~-------~~~~e~i~~al~~a~l~--~~i~~lp~gl 359 (367)
|-|..-||+ .||.|||+.-. +--++++.+.++.++|+ ++..+.|.-|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 999999995 59999997422 12456788899999997 4888888754
No 55
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-27 Score=207.69 Aligned_cols=132 Identities=36% Similarity=0.578 Sum_probs=119.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+.. +.+++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999633 34999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCC
Q 017723 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGN 364 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~ 364 (367)
|++|++.+|++|++||+.+.. ...++++.++++..++.+++..+|.|+++.++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 134 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG 134 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhh
Confidence 999999999999999998653 34567888899999999999999999987654
No 56
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.95 E-value=3.5e-27 Score=208.25 Aligned_cols=132 Identities=36% Similarity=0.572 Sum_probs=117.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|+...+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999996544459999999999999999999999999999999999999999999999999988888888999999
Q ss_pred eecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCC
Q 017723 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGN 364 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~ 364 (367)
++|++++|+.|++||+.+.. ..+.+++.++++..++.+++..+|.|+++.+.
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 133 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVG 133 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhh
Confidence 99999999999999997643 24566778888889999999999999887653
No 57
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=196.71 Aligned_cols=121 Identities=26% Similarity=0.386 Sum_probs=108.5
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC-----ceEEECCeecCCC--Ch
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-----GRILIDGLDICSM--GL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~-----G~I~~~g~~i~~~--~~ 303 (367)
..++++|+++.|. +..+|+|||++|++++.+|++|||||||||+++.+.|+.+..+ |+|.++|+++.+. +.
T Consensus 6 ~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3589999999995 3349999999999999999999999999999999999999987 9999999999875 67
Q ss_pred hhhhhhceEeecCccccccchhhhcCCCCC-------CCHHHHHHHHHHcCccHHHh
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-------YSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~ 353 (367)
-.+|+++|+|+|.|.-|+.||+||++++.. .-||.++++|++|.|++-+.
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK 140 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH
Confidence 899999999999999999999999987531 12466899999999999885
No 58
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.7e-27 Score=216.23 Aligned_cols=125 Identities=22% Similarity=0.353 Sum_probs=104.9
Q ss_pred CCCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC-
Q 017723 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS- 300 (367)
Q Consensus 227 ~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~- 300 (367)
|+..+.|+++|++++|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 44556799999999997544569999999999999999999999999999999999997 579999999999974
Q ss_pred -CChhhhhhhceEeecCccccccchhhhcCCCC---CCCHHH-----HHHHHHHcCccHH
Q 017723 301 -MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDNE-----IWEAMEKCQLKAT 351 (367)
Q Consensus 301 -~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~~~e~-----i~~al~~a~l~~~ 351 (367)
.+...+|+.++||||+|++|++|++|||.++. ..++++ ++++++.+++++.
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 214 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE 214 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch
Confidence 44567899999999999999999999998542 233333 5667888887543
No 59
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=3e-27 Score=195.16 Aligned_cols=126 Identities=33% Similarity=0.489 Sum_probs=109.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC-CCChhhhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC-SMGLKDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~-~~~~~~~r~~i 310 (367)
-|+++||+.+|... .+|++||+++++||.++|+||||||||||+++|.++-+|++|+|.+||.++. +.+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 38999999999643 4999999999999999999999999999999999999999999999997664 33788999999
Q ss_pred eEeecCcccccc-chhhhcCCCC----CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~----~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+|+|++.||+- |+.||+..+. ..+ +++..+.|++++|.+-.+..|..|
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcccc
Confidence 999999999965 9999997542 122 345677899999999999999765
No 60
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.94 E-value=1.1e-26 Score=202.85 Aligned_cols=134 Identities=32% Similarity=0.546 Sum_probs=119.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+.....+++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999643345999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EeecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
|++|++.+|+.|++||+.+.. ..+++++.++++..++.+.+..+|.|++|.+..
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 136 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGE 136 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecC
Confidence 999999999999999997653 345667889999999999999999999987643
No 61
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1e-26 Score=205.26 Aligned_cols=132 Identities=35% Similarity=0.584 Sum_probs=119.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|+.. ..+++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 349999999999999999999999999999999999999999999999999998888889999999
Q ss_pred eecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
++|++.+|++|++||+.+.. +.+++++..+++.+++.+.+..+|.|+++.+..
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 133 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE 133 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc
Confidence 99999999999999997653 456677888999999999999999999886643
No 62
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=9.5e-27 Score=200.72 Aligned_cols=120 Identities=26% Similarity=0.420 Sum_probs=108.5
Q ss_pred EEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
|+++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57899999996542 3599999999999999999999999999999999999999999999998 6
Q ss_pred ceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 310 i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
++|++|+|++|+.|++||+.+....++++.+++++.+++.+++..+|.|++|.+.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 123 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGE 123 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecC
Confidence 99999999999999999998765556677888999999999999999999887654
No 63
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.5e-26 Score=204.00 Aligned_cols=133 Identities=31% Similarity=0.487 Sum_probs=118.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++....+++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999996543359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred eecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
++|++.+|+.|++||+.+.. ..+.+++.++++..++.+++..+|.|+++.++.
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 134 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGE 134 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeecc
Confidence 99999999999999998653 345677888889999999999999988876543
No 64
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=2e-26 Score=199.20 Aligned_cols=116 Identities=56% Similarity=1.016 Sum_probs=103.0
Q ss_pred CcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhh
Q 017723 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 308 (367)
Q Consensus 229 ~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 308 (367)
..+.|+++|++++|+....++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 3 EHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 34579999999999754345999999999999999999999999999999999999999999999999998888888899
Q ss_pred hceEeecCccccccchhhhcCCCCCCCHHHHHHHHH
Q 017723 309 KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAME 344 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~ 344 (367)
+++||+|+|.+|++|++||+.+....+++++.++++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~ 118 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR 118 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh
Confidence 999999999999999999997654456666666665
No 65
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.94 E-value=4.1e-26 Score=199.98 Aligned_cols=136 Identities=29% Similarity=0.452 Sum_probs=118.0
Q ss_pred cceEEEEeeEEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhh
Q 017723 230 HGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 308 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 308 (367)
.+.|+++|++++|+.. ...+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999643 235999999999999999999999999999999999999999999999999998888788889
Q ss_pred hceEeecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 309 KLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
.++|++|++.+|+.|++||+.+.. ..+.+++.+..+...+++++..+|.|+++.+.+
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~ 146 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE 146 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc
Confidence 999999999999999999997642 334556666777788899999999888876543
No 66
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.94 E-value=3.1e-26 Score=202.35 Aligned_cols=132 Identities=35% Similarity=0.588 Sum_probs=117.0
Q ss_pred EEEEeeEEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 233 IELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
|+++|++++|++. ..++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999653 245999999999999999999999999999999999999999999999999998888878888999
Q ss_pred EeecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCC
Q 017723 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGN 364 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~ 364 (367)
|++|++.+|+.|++||+.+.. ....+++.+.++..++.+++..+|.|+++.+.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG 134 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeec
Confidence 999999999999999998652 33556778888888999999999999887654
No 67
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=2.5e-26 Score=207.76 Aligned_cols=124 Identities=26% Similarity=0.387 Sum_probs=110.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++||+-+|. ...+++|+||+|++||.+++.|||||||||++++|+||.+|++|+|.+||.++.++++. +++|+
T Consensus 5 ~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG 80 (352)
T ss_pred eEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence 699999999996 34599999999999999999999999999999999999999999999999999998765 58999
Q ss_pred EeecCccccc-cchhhhcCCCCC----CC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFR-GSVRTNLDPLGM----YS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~-~Ti~eNi~~~~~----~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+|+|+.-||+ .||+|||.++-. .. ++++.++++.+++.++-.+.|..|
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 9999999995 599999987632 22 248999999999999999888754
No 68
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.6e-26 Score=195.23 Aligned_cols=121 Identities=25% Similarity=0.366 Sum_probs=106.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.+.+++|+..|+. ..+|+|+||+|++||+++|+||||||||||+++++|+.+|++|+|.++|.++.... ..++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCEE
Confidence 4889999999965 44999999999999999999999999999999999999999999999999885443 4899
Q ss_pred EeecCcccccc-chhhhcCCCCCC-------CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLGMY-------SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~~~-------~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.||+= |++||+.++-+. ..+++.++++.++|.+|-+..|..|
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qL 131 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQL 131 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcccc
Confidence 99999999975 999999765321 3457999999999999999999754
No 69
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=1.8e-26 Score=200.81 Aligned_cols=127 Identities=25% Similarity=0.434 Sum_probs=108.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh---hhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 309 (367)
|+++|++++|++..+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999964434599999999999999999999999999999999999999999999999998876543 47889
Q ss_pred ceEeecCccccc-cchhhhcCCC----C-C--CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 310 LSIIPQEPTLFR-GSVRTNLDPL----G-M--YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 310 i~~V~Q~~~lf~-~Ti~eNi~~~----~-~--~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++|++|++.+|+ .|++||+.+. . . ..++++.++++..++.++....|..|
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQL 139 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 999999999987 5999999742 1 1 13457889999999988887766543
No 70
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=4.9e-26 Score=198.34 Aligned_cols=131 Identities=17% Similarity=0.270 Sum_probs=114.4
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh----hhhhhh
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTK 309 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~~ 309 (367)
.+.|+.|+|+++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578899999755 459999999999999999999999999999999999999999999999998876542 345678
Q ss_pred ceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 310 i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
++|++|++.+|+.|++||+.+....++++.+++++.+++.+++..+|.|++|.++.
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 136 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCccc
Confidence 99999999999999999998654455677788999999999999999998886653
No 71
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=4.5e-26 Score=197.44 Aligned_cols=121 Identities=31% Similarity=0.499 Sum_probs=107.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.++++|++|+|+ .+++|+|+||+|++||.++|+||+|||||||+|+|.|+++|.+|+|++||+++.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999996 345999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcc-ccccchhhhcCCCC-----------CCCHHHHHHHHHHcCccHHHhh
Q 017723 312 IIPQEPT-LFRGSVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 312 ~V~Q~~~-lf~~Ti~eNi~~~~-----------~~~~e~i~~al~~a~l~~~i~~ 354 (367)
||||++. -|.-|++|=+.++. +.+++.+.+|++.+++.++..+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 9999965 57889999886542 1133468899999999999875
No 72
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.5e-26 Score=196.45 Aligned_cols=127 Identities=27% Similarity=0.425 Sum_probs=111.1
Q ss_pred EEEEeeEEEeCCC---CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh---hh
Q 017723 233 IELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DL 306 (367)
Q Consensus 233 I~~~nvsf~Y~~~---~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~ 306 (367)
|++++|+..|+.. ...+|+|+||+|++||..+|||+||+|||||++++.++-.|++|+|.+||+++..++.+ ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 24599999999999999999999999999999999999999999999999998888765 56
Q ss_pred hhhceEeecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 307 RTKLSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 307 r~~i~~V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|++||+++|++.|++ .|+.+|+++.- ..+ ++++.+.|+.++|.|....-|..|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qL 142 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQL 142 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhc
Confidence 889999999999998 89999998642 122 357888999999999998887654
No 73
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-25 Score=194.60 Aligned_cols=127 Identities=34% Similarity=0.525 Sum_probs=114.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC-CCChhhhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC-SMGLKDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~-~~~~~~~r~~i 310 (367)
-|+++|++|+|+++ .++|+++|++|++|+.++|+|+||||||||+++|.|+++|++|+|.++|.++. +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999876 56999999999999999999999999999999999999999999999999998 48889999999
Q ss_pred eEeecCc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~--~lf~~Ti~eNi~~~~---~~~~----e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+|+|+| ++|..||.|.++++. ..+. +++.++++.+++.++.+..|..|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~L 139 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNL 139 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcccc
Confidence 9999999 799999999998763 2333 46888999999999987777654
No 74
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=188.18 Aligned_cols=121 Identities=28% Similarity=0.438 Sum_probs=104.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC---hhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~r~ 308 (367)
.|+++||+-.||.+ +.+|+||||+|++||.+||+|+||||||||++.|.|+.+|++|+|.++|.++..+. .+.+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999844 55999999999999999999999999999999999999999999999999998887 557899
Q ss_pred hceEeecCccccc-cchhhhcCCCC---------------CCCHHHHHHHHHHcCccHHHh
Q 017723 309 KLSIIPQEPTLFR-GSVRTNLDPLG---------------MYSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 309 ~i~~V~Q~~~lf~-~Ti~eNi~~~~---------------~~~~e~i~~al~~a~l~~~i~ 353 (367)
++|+++|++.|.+ -|+.+|+..+. .-+..+..+||+.+++.+...
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Confidence 9999999999865 48999985321 113346778899999988754
No 75
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.9e-26 Score=202.72 Aligned_cols=127 Identities=27% Similarity=0.461 Sum_probs=111.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++||+++|+.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 34999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EeecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|+| .+|..|++||+.++. ..+ ++++.++++.+++.++....|..|
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 999998 688999999997542 122 356788999999998888777644
No 76
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=1.7e-25 Score=187.69 Aligned_cols=125 Identities=26% Similarity=0.484 Sum_probs=108.1
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh---hhh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 307 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r 307 (367)
.-|++++|+++|.+ +.+++|+||++++||.++|+|+||||||||++++.|++.|++|+|.++|.++.+++.+ .+|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 35999999999943 4599999999999999999999999999999999999999999999999999999875 569
Q ss_pred hhceEeecCcccccc-chhhhcCCC----CCCCHHHHHH----HHHHcCccHH-HhhCcc
Q 017723 308 TKLSIIPQEPTLFRG-SVRTNLDPL----GMYSDNEIWE----AMEKCQLKAT-ISRLPM 357 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~~-Ti~eNi~~~----~~~~~e~i~~----al~~a~l~~~-i~~lp~ 357 (367)
+++|+++|.--||+. |+.||+.+. ...+++++++ -++.++|... .+.+|.
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps 144 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS 144 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch
Confidence 999999999999977 999999863 1345555444 6788999888 556664
No 77
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=2.2e-25 Score=189.36 Aligned_cols=126 Identities=29% Similarity=0.395 Sum_probs=105.3
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh----hh
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK----DL 306 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~----~~ 306 (367)
++++||+-.|.... ..+|+++||+|++||.+||+||||||||||+++|.|+..|++|+|.++|.|+..++.+ ..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999995432 3599999999999999999999999999999999999999999999999999999854 33
Q ss_pred hhhceEeecCcccccc-chhhhcCC----CC-C--CCHHHHHHHHHHcCccHHHh-hCccc
Q 017723 307 RTKLSIIPQEPTLFRG-SVRTNLDP----LG-M--YSDNEIWEAMEKCQLKATIS-RLPML 358 (367)
Q Consensus 307 r~~i~~V~Q~~~lf~~-Ti~eNi~~----~~-~--~~~e~i~~al~~a~l~~~i~-~lp~g 358 (367)
|++||||+|+.+|++. |++|||.+ .. . ..++++.+.++..++.+... ..|.-
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~e 142 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSE 142 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchh
Confidence 6779999999998755 99999963 22 1 12567788888889987766 66653
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=201.93 Aligned_cols=128 Identities=26% Similarity=0.433 Sum_probs=110.8
Q ss_pred eEEEEeeEEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
.|+++||+++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEeecCcc--ccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~~--lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+||+|+|. ++..|++|||.++. ..+ ++++.++++.+++.++.+..|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 99999983 66789999997642 122 356889999999998888777543
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=1.7e-25 Score=195.05 Aligned_cols=126 Identities=28% Similarity=0.414 Sum_probs=105.3
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh----h
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----L 306 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~----~ 306 (367)
|+++||+++|++.. +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996431 45999999999999999999999999999999999999999999999999998776432 4
Q ss_pred hhhceEeecCcccccc-chhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 307 RTKLSIIPQEPTLFRG-SVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 307 r~~i~~V~Q~~~lf~~-Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+++++|++|++.+|++ |++||+.+.. .. .++++.++++..++.+.....|..
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSE 140 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhh
Confidence 5789999999999986 9999997531 11 235688899999998877665543
No 80
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.7e-25 Score=197.15 Aligned_cols=124 Identities=30% Similarity=0.483 Sum_probs=105.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh---hhhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 309 (367)
|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999953 349999999999999999999999999999999999999999999999999987764 567889
Q ss_pred ceEeecCcccccc-chhhhcCCCC----CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 310 LSIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi~~~~----~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++||+|++.+|+. |++||+.++. ..+ ++++.++++..++.++....|..
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 9999999999986 9999996531 122 34577889999998877665543
No 81
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-25 Score=200.39 Aligned_cols=128 Identities=26% Similarity=0.410 Sum_probs=111.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++||+++|+...+++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999654445999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EeecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|++|++ .+++.|++|||.+.. ..+ ++++.++++..++.+++...|..|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 999998 467889999997531 122 346888999999999988887644
No 82
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=1.9e-25 Score=205.37 Aligned_cols=127 Identities=24% Similarity=0.370 Sum_probs=109.0
Q ss_pred EEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---hh
Q 017723 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (367)
Q Consensus 233 I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 307 (367)
|+++||+++|+.. ...+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 235999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hhceEeecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 308 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++|+||+|++.+|+ .|++||+.+.. ..+ ++++.++++.+++.+..+..|..|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 89999999999995 79999997531 122 346788999999999888777544
No 83
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.6e-25 Score=195.76 Aligned_cols=127 Identities=25% Similarity=0.389 Sum_probs=106.3
Q ss_pred eEEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---h
Q 017723 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~ 306 (367)
-++++||+|+|++.. .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-hhceEeecCcccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 307 R-TKLSIIPQEPTLFRG-SVRTNLDPL---GMY----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 307 r-~~i~~V~Q~~~lf~~-Ti~eNi~~~---~~~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
| +.++|++|++.+|+. |++||+.+. ... .++++.++++..++.+.....|..
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 145 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSE 145 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 3 679999999999876 999998642 111 235688899999998877665543
No 84
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.1e-25 Score=201.54 Aligned_cols=126 Identities=22% Similarity=0.353 Sum_probs=103.7
Q ss_pred ceEEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC------
Q 017723 231 GRIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------ 301 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~------ 301 (367)
.-|+++|++|+|++.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4599999999996432 3599999999999999999999999999999999999999999999999998653
Q ss_pred ----------ChhhhhhhceEeecCc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCcc-HHHhhCc
Q 017723 302 ----------GLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISRLP 356 (367)
Q Consensus 302 ----------~~~~~r~~i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~~----e~i~~al~~a~l~-~~i~~lp 356 (367)
+...+|++++||+|+| ++|+.|++|||.++. ..++ +++.++++..++. ++..+-|
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 3467899999999998 799999999997642 1232 3456677788875 4554443
No 85
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=2.4e-25 Score=178.45 Aligned_cols=121 Identities=26% Similarity=0.387 Sum_probs=106.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|.+++|+|+|..... ..++++++||++||+||||||||||++|++||..|.+|+|.+||+|....++. ++=+++
T Consensus 2 l~L~~V~~~y~~~~~----~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHLPM----RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcceE----EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 568899999964332 67899999999999999999999999999999999999999999999887765 467999
Q ss_pred eecCcccccc-chhhhcCCCCC-------CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++||..||.- ||.+||.++-. .+.++++.++..+|+..+.++||..|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 9999999965 99999976521 24578999999999999999999865
No 86
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=3.1e-25 Score=191.41 Aligned_cols=122 Identities=26% Similarity=0.412 Sum_probs=104.4
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
+++|++++|++. ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 349999999999999999999999999999999999999999999999998754 4577889999
Q ss_pred ecCc--cccccchhhhcCCCC---CCCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 314 PQEP--TLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 314 ~Q~~--~lf~~Ti~eNi~~~~---~~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+|++ .+|+.|++||+.+.. ...++++.++++..++.++....|..|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 9998 478899999997542 123467899999999998888777654
No 87
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.92 E-value=3e-25 Score=192.94 Aligned_cols=126 Identities=26% Similarity=0.364 Sum_probs=106.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh---hhhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 309 (367)
|+++|++++|++. +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 349999999999999999999999999999999999999999999999999987754 357889
Q ss_pred ceEeecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 310 LSIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 310 i~~V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++||+|++.+|+ .|++||+.+.. .. .++++.++++..++.+.....|..|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 999999999998 49999996431 11 2346788999999988777666543
No 88
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.92 E-value=3.4e-25 Score=193.17 Aligned_cols=124 Identities=25% Similarity=0.438 Sum_probs=104.7
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
|+++||+++|++.. +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 159999999999999999999999999999999999999999999999999875 456778899
Q ss_pred eEeecCcccccc-chhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
+|++|++.+|+. |++||+.+.. .. .++++.++++..++.+.....+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh
Confidence 999999999985 9999996421 11 24567889999999877665443
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=3.4e-25 Score=192.60 Aligned_cols=125 Identities=22% Similarity=0.351 Sum_probs=106.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh---hhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 309 (367)
|+++|++++|+++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6899999999533 3599999999999999999999999999999999999999999999999999877643 46789
Q ss_pred ceEeecCccccc-cchhhhcCCCC-------CCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 310 LSIIPQEPTLFR-GSVRTNLDPLG-------MYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 310 i~~V~Q~~~lf~-~Ti~eNi~~~~-------~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++|++|++.+|. .|++||+.+.. ...+++++++++..++.+.....|..
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 999999999986 69999986421 11245788999999998877766643
No 90
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.7e-25 Score=192.94 Aligned_cols=124 Identities=31% Similarity=0.503 Sum_probs=107.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++|+|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 34999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EeecCccccccchhhhcCCCC---CCCHHHHHHHHHHcCcc-HHHhhCcc
Q 017723 312 IIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLK-ATISRLPM 357 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~~---~~~~e~i~~al~~a~l~-~~i~~lp~ 357 (367)
|++|++.+|+.|++||+.+.. ...++++.++++..++. +....-|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK 130 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 999999999999999997532 12345788889999886 45554443
No 91
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.92 E-value=5.3e-25 Score=193.09 Aligned_cols=121 Identities=33% Similarity=0.517 Sum_probs=105.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC-----CCCCceEEECCeecCCCC--hhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILIDGLDICSMG--LKD 305 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~-----~p~~G~I~~~g~~i~~~~--~~~ 305 (367)
|+++||+++|++. .+|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999642 4999999999999999999999999999999999999 999999999999998776 567
Q ss_pred hhhhceEeecCccccccchhhhcCCCC---C-C----CHHHHHHHHHHcCccHHHhhC
Q 017723 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---M-Y----SDNEIWEAMEKCQLKATISRL 355 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~-~----~~e~i~~al~~a~l~~~i~~l 355 (367)
+|++++|++|++.+|+.|++||+.+.. . . .++++.++++..++.+.....
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 788999999999999999999997531 1 1 235688899999998877655
No 92
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=2.8e-25 Score=175.76 Aligned_cols=112 Identities=24% Similarity=0.442 Sum_probs=99.8
Q ss_pred eCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccc
Q 017723 242 YRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (367)
Q Consensus 242 Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~ 321 (367)
|.....++|+|+||++++||.++|+||||||||||++.++-+.+|++|++++.|.+++.++++.+|.+++|+.|.|.||.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 43445569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCC-----CCCCHHHHHHHHHHcCccHHHh
Q 017723 322 GSVRTNLDPL-----GMYSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 322 ~Ti~eNi~~~-----~~~~~e~i~~al~~a~l~~~i~ 353 (367)
+||.||+-+. ...+.+...+.++.+++.+.+.
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L 127 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL 127 (223)
T ss_pred cchhhccccchHHhccCCChHHHHHHHHHcCCchhhh
Confidence 9999998652 2346677788888888877654
No 93
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=4.1e-25 Score=192.90 Aligned_cols=123 Identities=24% Similarity=0.359 Sum_probs=102.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++||++.|++.++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999964324599999999999999999999999999999999999999999999999998764 3667889999
Q ss_pred eecCcccc-ccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCc
Q 017723 313 IPQEPTLF-RGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 313 V~Q~~~lf-~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp 356 (367)
|+|++.+| +.|++||+.+.. ..+ +++++++++..++.+.....+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 131 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA 131 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh
Confidence 99999998 579999996421 112 346778888888877655443
No 94
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.5e-25 Score=189.69 Aligned_cols=118 Identities=28% Similarity=0.456 Sum_probs=102.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++|+|... + +|+||||++++|+.++|+||+|||||||+|+++|+.+|++|+|.+.|.+.++... +.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999754 4 9999999999999999999999999999999999999999999999988766543 56899
Q ss_pred EeecCc---cccccchhhhcCCCC--C---------CCHHHHHHHHHHcCccHHHhh
Q 017723 312 IIPQEP---TLFRGSVRTNLDPLG--M---------YSDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 312 ~V~Q~~---~lf~~Ti~eNi~~~~--~---------~~~e~i~~al~~a~l~~~i~~ 354 (367)
||||.. +=|+-|++|=+.++. . .+.+++.+||+.+++.++.++
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r 135 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR 135 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC
Confidence 999965 459999999986541 1 235899999999999988654
No 95
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.1e-25 Score=198.81 Aligned_cols=126 Identities=33% Similarity=0.548 Sum_probs=105.0
Q ss_pred eEEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC--hhhh
Q 017723 232 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDL 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~ 306 (367)
.|+++||+++|++.. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999996432 35999999999999999999999999999999999999999999999999998754 3577
Q ss_pred hhhceEeecCc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCcc--HHHhhCcc
Q 017723 307 RTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK--ATISRLPM 357 (367)
Q Consensus 307 r~~i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~~----e~i~~al~~a~l~--~~i~~lp~ 357 (367)
|++++||+|+| .+|+.|++|||.++. ..++ +++.++++.+++. ++....|.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 143 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF 143 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcc
Confidence 89999999998 578999999997542 1232 4578899999996 45544443
No 96
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.9e-25 Score=202.84 Aligned_cols=125 Identities=25% Similarity=0.354 Sum_probs=108.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+++ ..+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.++++. +++++
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999533 3499999999999999999999999999999999999999999999999999887654 47899
Q ss_pred EeecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+ .|++|||.++. ..+ ++++.++++..++.++.++.|..|
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 135 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPREL 135 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhC
Confidence 9999999996 59999997642 122 356789999999999998888654
No 97
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.6e-25 Score=198.70 Aligned_cols=126 Identities=27% Similarity=0.439 Sum_probs=104.9
Q ss_pred EEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC----CChhh
Q 017723 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD 305 (367)
Q Consensus 233 I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~----~~~~~ 305 (367)
|+++||+|+|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhhhceEeecCc--cccccchhhhcCCCC-C--CC----HHHHHHHHHHcCcc-HHHhhCccc
Q 017723 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG-M--YS----DNEIWEAMEKCQLK-ATISRLPML 358 (367)
Q Consensus 306 ~r~~i~~V~Q~~--~lf~~Ti~eNi~~~~-~--~~----~e~i~~al~~a~l~-~~i~~lp~g 358 (367)
+|+.++||+|+| .+|+.|+.||+.++. + .+ ++++.++++.+++. ++....|..
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 144 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE 144 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCccc
Confidence 889999999998 799999999997642 1 22 23577888888985 455555543
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=5.2e-25 Score=191.01 Aligned_cols=125 Identities=33% Similarity=0.505 Sum_probs=105.8
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
+++|++++|++..+.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999965334599999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 314 PQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 314 ~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++ .+++.|++||+.+.. ..+ ++++.++++..++.+++...|..
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFT 134 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9998 367889999996531 112 34677889999998877766543
No 99
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.5e-25 Score=196.91 Aligned_cols=128 Identities=28% Similarity=0.459 Sum_probs=109.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+++.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999644445999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EeecCc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~--~lf~~Ti~eNi~~~~---~~~~----e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++ .++..|++||+.+.. ..+. +++.++++..++.+++...|..|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 143 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccC
Confidence 999998 456789999997531 1222 24677889999988887766543
No 100
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.92 E-value=1e-24 Score=193.38 Aligned_cols=124 Identities=29% Similarity=0.428 Sum_probs=104.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh---hhhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 309 (367)
|+++||+++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999623 349999999999999999999999999999999999999999999999999887654 346889
Q ss_pred ceEeecCccccc-cchhhhcCCCC---------------CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 310 LSIIPQEPTLFR-GSVRTNLDPLG---------------MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 310 i~~V~Q~~~lf~-~Ti~eNi~~~~---------------~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++||+|++.+|+ .|++||+.+.. ...++++.++++..++.+.....|.
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 999999999886 59999996421 1123467888999998877665544
No 101
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.7e-25 Score=203.00 Aligned_cols=126 Identities=28% Similarity=0.428 Sum_probs=106.7
Q ss_pred EEEEeeEEEeCC--CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---hh
Q 017723 233 IELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (367)
Q Consensus 233 I~~~nvsf~Y~~--~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 307 (367)
|+++||+++|+. ....+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 2345999999999999999999999999999999999999999999999999998887654 47
Q ss_pred hhceEeecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 308 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++++||+|++.+|+ .|++||+.+.. ..+ ++++.++++..++.++....|..
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 140 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQ 140 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 89999999999986 69999996431 122 34678889999998877766543
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=99.92 E-value=9.1e-25 Score=190.88 Aligned_cols=125 Identities=25% Similarity=0.421 Sum_probs=104.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---hhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r~~ 309 (367)
|+++|++++|+++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999998776543 6889
Q ss_pred ceEeecCccc-cccchhhhcCCC---CCCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 310 LSIIPQEPTL-FRGSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 310 i~~V~Q~~~l-f~~Ti~eNi~~~---~~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++|++|++.+ ++.|++||+.+. ...+ ++++.++++..++.++....|..
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchh
Confidence 9999999997 567999999753 1122 23567888999988877766543
No 103
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=1.9e-24 Score=189.14 Aligned_cols=117 Identities=25% Similarity=0.393 Sum_probs=103.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++||++.|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4999999999963 34999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EeecCccccccchhhhcCCC----C-CCCHHHHHHHHHHcCccH
Q 017723 312 IIPQEPTLFRGSVRTNLDPL----G-MYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~----~-~~~~e~i~~al~~a~l~~ 350 (367)
|++|++.+|+.|++||+.+. . ...++++.++++..++.+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 99999999999999999642 1 123456778898888854
No 104
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1e-24 Score=193.15 Aligned_cols=124 Identities=31% Similarity=0.446 Sum_probs=104.4
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC---hhhhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~r~~ 309 (367)
|+++||+++|+++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 34999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred ceEeecCccccc-cchhhhcCCCC---------------CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 310 LSIIPQEPTLFR-GSVRTNLDPLG---------------MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 310 i~~V~Q~~~lf~-~Ti~eNi~~~~---------------~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++||+|++.+|+ .|++||+.+.. +..++++.++++..++.+.....|.
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 999999999887 69999996421 1124567888999998877665443
No 105
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.5e-24 Score=195.94 Aligned_cols=128 Identities=20% Similarity=0.386 Sum_probs=110.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC---ceEEECCeecCCCChhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~---G~I~~~g~~i~~~~~~~~r~ 308 (367)
.|+++|++|+|++.+.++++|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 599999999997544459999999999999999999999999999999999999998 89999999998877778889
Q ss_pred hceEeecCc--cccccchhhhcCCC-C--CCCH----HHHHHHHHHcCccHHHhhCcccc
Q 017723 309 KLSIIPQEP--TLFRGSVRTNLDPL-G--MYSD----NEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 309 ~i~~V~Q~~--~lf~~Ti~eNi~~~-~--~~~~----e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+++||+|+| .+++.|++||+.+. . ..+. +++.++++.+++.++....|..|
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 999999998 46789999999753 1 1233 45788999999998888777544
No 106
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=197.24 Aligned_cols=126 Identities=23% Similarity=0.444 Sum_probs=104.2
Q ss_pred eEEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC----hh
Q 017723 232 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~----~~ 304 (367)
.|+++||+|+|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+ ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999996432 35999999999999999999999999999999999999999999999999987543 45
Q ss_pred hhhhhceEeecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCcc-HHHhhCcc
Q 017723 305 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLK-ATISRLPM 357 (367)
Q Consensus 305 ~~r~~i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~-~~i~~lp~ 357 (367)
.+|+.++||+|+| .+|+.|++|||.++. ..+ ++++.++++.+++. +.....|.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 144 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF 144 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc
Confidence 7899999999998 689999999997641 123 34567788888886 45554443
No 107
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.92 E-value=8.3e-25 Score=190.03 Aligned_cols=124 Identities=34% Similarity=0.513 Sum_probs=103.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC--CChhhhhhhc
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL 310 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i 310 (367)
|+++||+++|++ +.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 349999999999999999999999999999999999999999999999998853 3456778999
Q ss_pred eEeecCccccc-cchhhhcCCCC----CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~~----~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++|++.+|+ .|++||+.+.. ..+ ++++.++++..++.+.+...|..
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 135 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQ 135 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccc
Confidence 99999999987 69999996431 122 34577888888888777766543
No 108
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.7e-25 Score=192.20 Aligned_cols=127 Identities=27% Similarity=0.433 Sum_probs=106.4
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---hh
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 307 (367)
|+++|++++|++.. .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... ++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996431 25999999999999999999999999999999999999999999999999998776543 47
Q ss_pred hhceEeecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 308 TKLSIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+.++|++|++.+|+ .|++||+.+.. .. ..+++.++++..++.+.....|..|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQL 141 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhC
Confidence 88999999999997 69999996421 11 2456788999999988777665433
No 109
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.1e-25 Score=190.01 Aligned_cols=122 Identities=28% Similarity=0.408 Sum_probs=103.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 349999999999999999999999999999999999999999999999999876543 5678999
Q ss_pred eecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
|+|++.+|. .|++||+.+.. .. .++++.++++..++.++....|..
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE 130 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 999999886 69999996431 11 234678899999998887766543
No 110
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.92 E-value=1.1e-24 Score=188.48 Aligned_cols=121 Identities=25% Similarity=0.404 Sum_probs=104.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+. ..+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 3499999999999999999999999999999999999999999999999988764 567889999
Q ss_pred eecCcccc-ccchhhhcCCCC---CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLF-RGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf-~~Ti~eNi~~~~---~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
|+|++.+| +.|++||+.+.. ..+++++.++++..++.+.....|.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK 125 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh
Confidence 99999988 579999996531 2356788999999999887765443
No 111
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.91 E-value=1.4e-24 Score=189.66 Aligned_cols=126 Identities=31% Similarity=0.478 Sum_probs=104.8
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---hh
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 307 (367)
|+++||+++|++.. ..+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996432 35999999999999999999999999999999999999999999999999998877544 34
Q ss_pred -hhceEeecCccccc-cchhhhcCCC---CCC----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 308 -TKLSIIPQEPTLFR-GSVRTNLDPL---GMY----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 308 -~~i~~V~Q~~~lf~-~Ti~eNi~~~---~~~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+.++||+|++.+|+ .|++||+.+. ... .++++.++++..++++.....|..
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE 141 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 67999999999996 5999999642 111 234678889999998777665543
No 112
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-24 Score=194.57 Aligned_cols=126 Identities=25% Similarity=0.415 Sum_probs=108.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
++++|++++|++.. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 78999999996433 49999999999999999999999999999999999999999999999999988777888999999
Q ss_pred eecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+|++ .+|+.|++||+.+.. ..+ ++++.++++.+++.+++...|..|
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99998 478899999996421 122 245788999999998888777544
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.91 E-value=2.1e-24 Score=189.41 Aligned_cols=128 Identities=23% Similarity=0.329 Sum_probs=107.7
Q ss_pred eEEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---h
Q 017723 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~ 306 (367)
-|+++|++++|++.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999996532 24999999999999999999999999999999999999999999999999998887653 2
Q ss_pred -hhhceEeecCcccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 307 -RTKLSIIPQEPTLFRG-SVRTNLDPL---GMY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 307 -r~~i~~V~Q~~~lf~~-Ti~eNi~~~---~~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++.++|++|++.+|+. |++||+.+. ... ..+++.++++..++.+.+...|..|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 147 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhC
Confidence 3579999999999885 999998642 111 2457888999999988887766543
No 114
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=1.9e-24 Score=181.28 Aligned_cols=96 Identities=32% Similarity=0.682 Sum_probs=90.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|+..++.+++++||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544459999999999999999999999999999999999999999999999999999888889999999
Q ss_pred eecCccccccchhhhc
Q 017723 313 IPQEPTLFRGSVRTNL 328 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi 328 (367)
++|++.+|+.|++||+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999996
No 115
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-24 Score=191.71 Aligned_cols=120 Identities=19% Similarity=0.340 Sum_probs=104.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC---CCCceEEECCeecCCCChhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~r~ 308 (367)
.|+++|+++.|+. +.+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 349999999999999999999999999999999999985 68999999999999888888899
Q ss_pred hceEeecCccccccchhhhcCCCC---C------CCHHHHHHHHHHcCccHHHh
Q 017723 309 KLSIIPQEPTLFRGSVRTNLDPLG---M------YSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~Ti~eNi~~~~---~------~~~e~i~~al~~a~l~~~i~ 353 (367)
.++|++|++.+|+.|++||+.++. . ..++++.++++.+++.+++.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence 999999999999999999996531 1 12346788999999976553
No 116
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-24 Score=194.32 Aligned_cols=126 Identities=29% Similarity=0.388 Sum_probs=109.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++||+++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 24999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EeecCcccccc-chhhhcCCCC-----------CCCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~-----------~~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|++|++.++.+ |+.||+.+.. ...++++.++++.+++.+++...|..|
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 99999877665 9999997431 112457889999999988877766543
No 117
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1e-24 Score=189.16 Aligned_cols=121 Identities=31% Similarity=0.488 Sum_probs=103.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++||+|.|+. .++++|+||++++| +++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999954 24999999999999 99999999999999999999999999999999999988776 778899999
Q ss_pred eecCcccccc-chhhhcCCC---CCCC----HHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~---~~~~----~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.+|.+ |++||+.+. ...+ ++++.++++..++.++.+..|.
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIG 129 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchh
Confidence 9999999986 999998642 1111 3567889999999877655443
No 118
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=7.7e-24 Score=190.18 Aligned_cols=119 Identities=24% Similarity=0.408 Sum_probs=105.0
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
.+.|+++|+++. . +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 456999999995 2 3499999999999999999999999999999999999999999999998 4
Q ss_pred ceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 310 i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
++|++|++++|++|++||+.+.....+.++.++++.+++.+.+..+|.++++++++
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecC
Confidence 99999999999999999997653334556778888899999999999999887654
No 119
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.6e-24 Score=193.56 Aligned_cols=125 Identities=27% Similarity=0.469 Sum_probs=106.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC-hhhhhhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~r~~i~ 311 (367)
|+++|++++|++. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999643 34999999999999999999999999999999999999999999999999998775 367788999
Q ss_pred EeecCcc--ccccchhhhcCCCC-C--CC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 312 IIPQEPT--LFRGSVRTNLDPLG-M--YS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 312 ~V~Q~~~--lf~~Ti~eNi~~~~-~--~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
||+|+|. +++.|++||+.+.. . .+ ++++.++++..++.++....|..
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKT 136 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCccc
Confidence 9999985 67789999997542 1 22 35678889999998887766643
No 120
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-24 Score=195.61 Aligned_cols=125 Identities=30% Similarity=0.447 Sum_probs=103.3
Q ss_pred eEEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC----CChh
Q 017723 232 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~----~~~~ 304 (367)
.|+++|++|+|++.+ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 359999999999999999999999999999999999999999999999999864 3456
Q ss_pred hhhhhceEeecCc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCcc-HHHhhCc
Q 017723 305 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISRLP 356 (367)
Q Consensus 305 ~~r~~i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~~----e~i~~al~~a~l~-~~i~~lp 356 (367)
.+|+.++||+|+| .+|+.|++|||.++. ..+. +++.++++.++++ +....-|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP 143 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCc
Confidence 7888999999998 689999999997541 1222 3577888999996 4444434
No 121
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=199.29 Aligned_cols=124 Identities=26% Similarity=0.379 Sum_probs=107.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+. ..+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .+++++
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999953 348999999999999999999999999999999999999999999999999987664 468899
Q ss_pred EeecCcccccc-chhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+. |++|||.++. .. .++++.++++..++.++..+.|..|
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~L 137 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQI 137 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 99999999965 9999998641 12 2457889999999998888777643
No 122
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.6e-24 Score=191.86 Aligned_cols=123 Identities=29% Similarity=0.449 Sum_probs=104.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
++++||+++|++. +.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999642 349999999999999999999999999999999999999999999999999988888888899999
Q ss_pred eecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccH--HHhhCc
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKA--TISRLP 356 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~--~i~~lp 356 (367)
++|++.+|+ .|++||+.+.. .. .++++.++++..++.+ .....|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 133 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP 133 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcCh
Confidence 999999996 69999996431 11 2346778888888874 444433
No 123
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.91 E-value=1.4e-24 Score=189.31 Aligned_cols=127 Identities=25% Similarity=0.311 Sum_probs=107.9
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh---hhh
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 307 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r 307 (367)
++++|+++.|++.. +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996432 4599999999999999999999999999999999999999999999999999877643 468
Q ss_pred hhceEeecCccccc-cchhhhcCCCC----CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 308 TKLSIIPQEPTLFR-GSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~-~Ti~eNi~~~~----~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+.++|++|++.+|. .|+.||+.+.. ..+ ++++.++++..++.+++...|..|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l 142 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNL 142 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhC
Confidence 89999999999998 69999996431 122 246788999999988888777543
No 124
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.2e-24 Score=189.58 Aligned_cols=123 Identities=26% Similarity=0.373 Sum_probs=103.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999964 349999999999999999999999999999999999999999999999999876543 357899
Q ss_pred EeecCccccc-cchhhhcCCCC---CC----C----HHHHHHHHHHcCccHHHhhCccc
Q 017723 312 IIPQEPTLFR-GSVRTNLDPLG---MY----S----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 312 ~V~Q~~~lf~-~Ti~eNi~~~~---~~----~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
||+|+|.+|+ .|++||+.+.. .. + ++++.++++..++.+.....|..
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQ 136 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 9999999986 59999997531 11 1 24577889999998777665543
No 125
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.91 E-value=1.5e-24 Score=191.37 Aligned_cols=122 Identities=25% Similarity=0.412 Sum_probs=101.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 311 (367)
|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+ |..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999963 349999999999999999999999999999999999999999999999999988876654 56799
Q ss_pred EeecCcccccc-chhhhcCCCCC---C--------------CHHHHHHHHHHcCccHHHhhCc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLGM---Y--------------SDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~~---~--------------~~e~i~~al~~a~l~~~i~~lp 356 (367)
||+|++.+|++ |++||+.+... . ..+++.++++..++.+.....+
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 141 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA 141 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh
Confidence 99999999987 99999964310 0 1235677788888766554433
No 126
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.9e-24 Score=194.11 Aligned_cols=125 Identities=28% Similarity=0.482 Sum_probs=105.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC--CCChhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 309 (367)
-|+++||+++|+++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 35999999999999999999999999999999999999999999999999984 3445678899
Q ss_pred ceEeecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcc
Q 017723 310 LSIIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 310 i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++|++ .+|+.|++||+.+.. ..+ ++++.++++..++.++....+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 140 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTH 140 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcc
Confidence 99999998 578999999997531 122 3467888999999887665443
No 127
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.1e-24 Score=195.20 Aligned_cols=127 Identities=22% Similarity=0.324 Sum_probs=104.4
Q ss_pred eEEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC--------
Q 017723 232 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-------- 300 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~-------- 300 (367)
.|+++||+|+|+... ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996432 259999999999999999999999999999999999999999999999877632
Q ss_pred ----------------CChhhhhhhceEeecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCcc-HHHhh
Q 017723 301 ----------------MGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLK-ATISR 354 (367)
Q Consensus 301 ----------------~~~~~~r~~i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~-~~i~~ 354 (367)
.+...+|+.++||+|+| .+|..|++|||.++. ..+ ++++.++++.+++. ++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13457889999999986 689999999997642 122 34678899999996 56665
Q ss_pred Cccc
Q 017723 355 LPML 358 (367)
Q Consensus 355 lp~g 358 (367)
-|..
T Consensus 162 ~~~~ 165 (305)
T PRK13651 162 SPFE 165 (305)
T ss_pred Chhh
Confidence 5543
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.4e-24 Score=192.55 Aligned_cols=127 Identities=19% Similarity=0.356 Sum_probs=108.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|++..+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999754445999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeecCcc--ccccchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 312 IIPQEPT--LFRGSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 312 ~V~Q~~~--lf~~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
|++|+|. ++..|+++|+.+.. .. .++++.++++..++.++....|..
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNA 142 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCccc
Confidence 9999985 55678999986531 11 134677889999998877665543
No 129
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.8e-24 Score=188.75 Aligned_cols=122 Identities=24% Similarity=0.312 Sum_probs=103.0
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
|+++|++++|++.. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996421 359999999999999999999999999999999999999999999999998863 46789
Q ss_pred eEeecCccccc-cchhhhcCCCC---C----CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPLG---M----YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~~---~----~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+||+|++.+|+ .|++||+.+.. . ..++++.++++..++.+.....|..|
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 132 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQL 132 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 99999999988 69999996421 1 12457888999999988877766544
No 130
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.91 E-value=2.3e-24 Score=199.50 Aligned_cols=124 Identities=24% Similarity=0.333 Sum_probs=108.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999963 3489999999999999999999999999999999999999999999999999877653 67899
Q ss_pred EeecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+ .|++||+.++. .. .++++.++++..++.++.++.|..|
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~L 135 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQL 135 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhC
Confidence 9999999996 69999997641 11 2457889999999999888777644
No 131
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.9e-24 Score=191.58 Aligned_cols=123 Identities=23% Similarity=0.423 Sum_probs=107.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999963 349999999999999999999999999999999999999999999999999988888888889999
Q ss_pred eecCcccccc-chhhhcCCCC-----------CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~-----------~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.++++ |+.||+.++. ...++++.++++..++.+.....|.
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 137 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT 137 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc
Confidence 9999999876 9999997531 0123467888999999877766554
No 132
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4e-24 Score=192.69 Aligned_cols=128 Identities=24% Similarity=0.371 Sum_probs=109.0
Q ss_pred eEEEEeeEEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
-|+++||+++|++. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999887777889999
Q ss_pred eEeecCc--cccccchhhhcCCC-C--CCCH----HHHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEP--TLFRGSVRTNLDPL-G--MYSD----NEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~--~lf~~Ti~eNi~~~-~--~~~~----e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+||+|+| .+++.|+.|||.++ . ..++ +++.++++.+++.++....|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL 141 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 37788999999753 1 1233 35678899999988877666543
No 133
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=188.20 Aligned_cols=337 Identities=17% Similarity=0.123 Sum_probs=206.8
Q ss_pred HhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhccccHH
Q 017723 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIP-TVIVAKYIQGYYLSSARELMRMNGTTKAPIV 92 (367)
Q Consensus 14 ~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (367)
.|++.|++..-..+......++.+.+.++....-++....+...+.+. -.++...+.+.+.+..-+..-++.+.++++.
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 578888877755555555555554443333333333332222222222 2233344455555555555544555566665
Q ss_pred HHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------hC----
Q 017723 93 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL------LP---- 162 (367)
Q Consensus 93 ~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~---- 162 (367)
-.-+....+.++|..|+.++.+....++..+...+..........|+.+..+.+. .....+.++ +.
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~----Ylg~ilsy~vi~~p~Fs~h~y 341 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFD----YLGGILSYVVIAIPFFSGHVY 341 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhheeeEEeeeeeccccc
Confidence 5666777888999999999887777666666555544444444445444333322 211111111 11
Q ss_pred CCCCchHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCC-------C-----CCCCC-C-----C
Q 017723 163 GKHLPGFVGLSLS----YALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPP-------E-----PPAII-E-----E 220 (367)
Q Consensus 163 g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~-------~-----~~~~~-~-----~ 220 (367)
+.++...+...+. +...+...+..+......+.+-..-.+|+.++++.-. + +...+ . .
T Consensus 342 ~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~ 421 (659)
T KOG0060|consen 342 DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLP 421 (659)
T ss_pred CCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCC
Confidence 2333333222221 1223334444444444455555566788877763210 0 00000 0 0
Q ss_pred CCCCCCCCCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 221 TKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 221 ~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
...+..++.+..|+|++|++.-|.+.+.+++|+||+++.|+.+-|.||||||||+|++.+.|+|+-.+|.+.--...-.
T Consensus 422 ~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~- 500 (659)
T KOG0060|consen 422 PGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP- 500 (659)
T ss_pred CCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-
Confidence 0001122345679999999998876666888899999999999999999999999999999999999999976332110
Q ss_pred CChhhhhhhceEeecCccccccchhhhcCCC--------CCCCHHHHHHHHHHcCccHHHhhCccccCCcC
Q 017723 301 MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSG 363 (367)
Q Consensus 301 ~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~--------~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i 363 (367)
+.+-||||.|+.-.||+||-+-+. +-++|++|.+.|+.+++.+.+.+. +|+|+++
T Consensus 501 -------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~ 563 (659)
T KOG0060|consen 501 -------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQV 563 (659)
T ss_pred -------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchh
Confidence 458999999999999999998542 136899999999999999999886 5899764
No 134
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.91 E-value=5.1e-24 Score=183.08 Aligned_cols=121 Identities=27% Similarity=0.352 Sum_probs=104.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 34999999999999999999999999999999999999999999999999886543 567889999
Q ss_pred eecCcccc-ccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCc
Q 017723 313 IPQEPTLF-RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 313 V~Q~~~lf-~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp 356 (367)
++|++.++ +.|++||+.+.. ..+++++.++++..++.++....+
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 123 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPV 123 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCch
Confidence 99999886 589999997642 346778999999999987655444
No 135
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=6.3e-24 Score=189.54 Aligned_cols=124 Identities=23% Similarity=0.373 Sum_probs=107.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 349999999999999999999999999999999999999999999999999988888888889999
Q ss_pred eecCccc-cccchhhhcCCCC-C--C----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 313 IPQEPTL-FRGSVRTNLDPLG-M--Y----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 313 V~Q~~~l-f~~Ti~eNi~~~~-~--~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++|++.+ ++.|++||+.+.. . . .++++.++++..++.+.....|..
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQ 134 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCccc
Confidence 9999987 6789999996531 1 1 234678899999998877665543
No 136
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.91 E-value=2.3e-24 Score=187.25 Aligned_cols=122 Identities=27% Similarity=0.402 Sum_probs=102.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 2499999999999999999999999999999999999999999999999998766543 468999
Q ss_pred eecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++|++.+|+ .|++||+.+.. ..+ ++++.++++..++.+.....|..
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQ 130 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhh
Confidence 999999985 59999996531 111 34577889999998887766543
No 137
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=4.3e-24 Score=189.69 Aligned_cols=115 Identities=29% Similarity=0.441 Sum_probs=99.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-----CceEEECCeecCCC--Chhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLKD 305 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-----~G~I~~~g~~i~~~--~~~~ 305 (367)
|+++||+++|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 24999999999999999999999999999999999999998 99999999998763 3556
Q ss_pred hhhhceEeecCccccccchhhhcCCCC---C-C----CHHHHHHHHHHcCcc
Q 017723 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---M-Y----SDNEIWEAMEKCQLK 349 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~-~----~~e~i~~al~~a~l~ 349 (367)
+|++++||+|++.+|+.|++||+.+.. . . .++++.++++..++.
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 131 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALW 131 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 788999999999999999999997421 1 1 134678899999997
No 138
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.91 E-value=3.2e-24 Score=187.60 Aligned_cols=97 Identities=33% Similarity=0.576 Sum_probs=87.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 311 (367)
|+++||+++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 249999999999999999999999999999999999999999999999999988876654 67799
Q ss_pred EeecCcccccc-chhhhcCCC
Q 017723 312 IIPQEPTLFRG-SVRTNLDPL 331 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~ 331 (367)
|++|++.+|++ |++||+.+.
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~ 99 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLG 99 (222)
T ss_pred EeccccccCCCCcHHHHHHHH
Confidence 99999999986 999999753
No 139
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=5.8e-24 Score=182.67 Aligned_cols=119 Identities=23% Similarity=0.287 Sum_probs=101.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 349999999999999999999999999999999999999999999999998875 34577889999
Q ss_pred eecCcccc-ccchhhhcCCCC--CCCHHHHHHHHHHcCccHHHhh
Q 017723 313 IPQEPTLF-RGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 313 V~Q~~~lf-~~Ti~eNi~~~~--~~~~e~i~~al~~a~l~~~i~~ 354 (367)
++|++.++ ..|++||+.+.. ...++++.++++..++.+....
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 123 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY 123 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC
Confidence 99999986 579999997531 1234578888888888765543
No 140
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=2e-24 Score=187.57 Aligned_cols=118 Identities=30% Similarity=0.414 Sum_probs=99.5
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
+++||+++|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .+|++++||
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999964 34999999999999999999999999999999999999999999999998764 467899999
Q ss_pred ecCccc---cccchhhhcCCCCC-----------CCHHHHHHHHHHcCccHHHhhCccc
Q 017723 314 PQEPTL---FRGSVRTNLDPLGM-----------YSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 314 ~Q~~~l---f~~Ti~eNi~~~~~-----------~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++.+ |+.|++||+.+... ..+++++++++..++.++....|..
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 132 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE 132 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 999987 66899999965311 1235788899999998877765543
No 141
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.4e-24 Score=184.59 Aligned_cols=121 Identities=29% Similarity=0.458 Sum_probs=103.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++. . .|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~-~---~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ-P---MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE-e---cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999632 2 39999999999999999999999999999999999999999999999887654 3578999
Q ss_pred eecCcccccc-chhhhcCCCCC-------CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++|++.+|++ |++||+.+... .+++++.++++..++.+.....|..|
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 129 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL 129 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccC
Confidence 9999999975 99999964311 13457899999999998888777654
No 142
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=7.3e-24 Score=188.33 Aligned_cols=120 Identities=24% Similarity=0.322 Sum_probs=103.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999964 34999999999999999999999999999999999999999999999998763 4678899
Q ss_pred EeecCccccc-cchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 312 IIPQEPTLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 312 ~V~Q~~~lf~-~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
|++|++.+|+ .|++||+.+.. ...++++.++++..++.+.....|..
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 133 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAA 133 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhh
Confidence 9999999988 69999997542 22356788999999998877665543
No 143
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.91 E-value=4.6e-24 Score=199.61 Aligned_cols=124 Identities=28% Similarity=0.471 Sum_probs=109.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.+.++++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999963 34999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCccc-cccchhhhcCCCC-----------CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 312 IIPQEPTL-FRGSVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 312 ~V~Q~~~l-f~~Ti~eNi~~~~-----------~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
||+|++.+ |+.|++||+.++. ..++++++++++.+++.++..+.+.
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~ 138 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT 138 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh
Confidence 99999997 7889999996532 1134578999999999988766443
No 144
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.91 E-value=3e-24 Score=181.00 Aligned_cols=95 Identities=32% Similarity=0.643 Sum_probs=87.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|+...+++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434599999999999999999999999999999999999999999999999988776 6678899999
Q ss_pred eecCccccccchhhhc
Q 017723 313 IPQEPTLFRGSVRTNL 328 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi 328 (367)
++|++.+|+.|++||+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999997
No 145
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.91 E-value=4e-24 Score=190.41 Aligned_cols=125 Identities=25% Similarity=0.470 Sum_probs=105.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC----------
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---------- 302 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~---------- 302 (367)
|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999964 34999999999999999999999999999999999999999999999999987653
Q ss_pred ---hhhhhhhceEeecCccccc-cchhhhcCCCC----CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 303 ---LKDLRTKLSIIPQEPTLFR-GSVRTNLDPLG----MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 303 ---~~~~r~~i~~V~Q~~~lf~-~Ti~eNi~~~~----~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
...+|+.++||+|++.+|+ .|++||+.++. .. .++++.++++..++.+.+...|..|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhc
Confidence 2467889999999999985 79999997521 11 2356788999999988877766543
No 146
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.91 E-value=6e-24 Score=197.73 Aligned_cols=124 Identities=25% Similarity=0.378 Sum_probs=108.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+. ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.++. +++++
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999963 3489999999999999999999999999999999999999999999999999876654 57899
Q ss_pred EeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+. |++|||.++. ..+ ++++.++++..++.++.++.|..|
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~L 145 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQL 145 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 99999999965 9999997642 122 346788999999999999888654
No 147
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.6e-24 Score=188.40 Aligned_cols=126 Identities=25% Similarity=0.367 Sum_probs=104.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC------CCChhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC------SMGLKD 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~------~~~~~~ 305 (367)
.|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999963 34999999999999999999999999999999999999999999999999873 223456
Q ss_pred hhhhceEeecCcccccc-chhhhcCCC----CCC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 306 LRTKLSIIPQEPTLFRG-SVRTNLDPL----GMY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~~-Ti~eNi~~~----~~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+|++++|++|++.+|++ |++||+... ... ..+++.++++..++.+++...|..|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 142 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHL 142 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 78899999999999975 999999631 011 2345778888999988877766543
No 148
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.7e-24 Score=190.80 Aligned_cols=128 Identities=26% Similarity=0.426 Sum_probs=108.7
Q ss_pred eEEEEeeEEEeCCC----CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC-hhhh
Q 017723 232 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDL 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~----~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~ 306 (367)
-|+++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 245999999999999999999999999999999999999999999999999987654 3567
Q ss_pred hhhceEeecCcc--ccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 307 RTKLSIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 307 r~~i~~V~Q~~~--lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+.++||+|+|. +|..|+.||+.++. ..+ +++++++++.+++.++....|..|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 145 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLL 145 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 889999999984 77779999997542 112 356888999999999888877654
No 149
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.91 E-value=5.5e-24 Score=197.27 Aligned_cols=126 Identities=26% Similarity=0.411 Sum_probs=109.0
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC--ceEEECCeecCCCChhhhh
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN--GRILIDGLDICSMGLKDLR 307 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~--G~I~~~g~~i~~~~~~~~r 307 (367)
.++|+++||+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 357999999999964 349999999999999999999999999999999999999999 999999999987655 46
Q ss_pred hhceEeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 308 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++++||+|++.+|+. |++|||.++. ..+ ++++.++++..++.++.++.|..|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~L 138 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQL 138 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhC
Confidence 789999999999965 9999997531 122 346888999999999988888654
No 150
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.91 E-value=8.5e-24 Score=195.74 Aligned_cols=124 Identities=27% Similarity=0.375 Sum_probs=106.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 349999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EeecCccccc-cchhhhcCCCCC-------CC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFR-GSVRTNLDPLGM-------YS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~-~Ti~eNi~~~~~-------~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+ .|++||+.++.. .+ ++++.++++..++.++.+..|..|
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 137 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQL 137 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 9999999997 599999975411 12 357888999999988887776543
No 151
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.2e-24 Score=184.97 Aligned_cols=122 Identities=26% Similarity=0.382 Sum_probs=103.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3499999999999999999999999999999999999999999999999988753 4567889999
Q ss_pred eecCcccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLFRG-SVRTNLDPL---GMY----SDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~---~~~----~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.+|+. |++||+.+. ... .++++.++++..++.+.....|.
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 130 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh
Confidence 9999998875 999999642 111 24568889999999887766554
No 152
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.8e-24 Score=197.89 Aligned_cols=124 Identities=23% Similarity=0.291 Sum_probs=106.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 4899999999963 349999999999999999999999999999999999999999999999999987665 357899
Q ss_pred EeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+. |++||+.++. ..+ ++++.++++..++.++..+.|..|
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~L 134 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKAL 134 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhC
Confidence 99999999965 9999997531 122 356888999999998887777544
No 153
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.7e-24 Score=191.82 Aligned_cols=124 Identities=25% Similarity=0.366 Sum_probs=101.4
Q ss_pred eEEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC----Chh
Q 017723 232 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~----~~~ 304 (367)
.|+++||+++|++.. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 388999999996432 3599999999999999999999999999999999999999999999999998764 346
Q ss_pred hhhhhceEeecCc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCccH-HHhhC
Q 017723 305 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKA-TISRL 355 (367)
Q Consensus 305 ~~r~~i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~~----e~i~~al~~a~l~~-~i~~l 355 (367)
.+|+.++|++|++ .+|+.|++||+.+.. ..+. +++.++++..++.+ +....
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 7888999999998 688999999997531 1222 24566778888863 44433
No 154
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=7.6e-24 Score=183.84 Aligned_cols=121 Identities=22% Similarity=0.418 Sum_probs=103.5
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
++++||+++|++ .++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 468999999999999999999999999999999999999999999999987643 46788999
Q ss_pred eecCcccccc-chhhhcCCC--CC-----CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEPTLFRG-SVRTNLDPL--GM-----YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~--~~-----~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+|++.+|.+ |++||+.+. .. ..++++.++++..++.+.....|..|
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 129 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQL 129 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccC
Confidence 9999999975 999999642 11 13457888999999998888877654
No 155
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.8e-24 Score=185.38 Aligned_cols=119 Identities=25% Similarity=0.438 Sum_probs=99.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ +.+++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999963 349999999999999999999999999999999999999999999999987753 56789999
Q ss_pred eecCcccccc-chhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.+|++ |++||+.+.. .. .++++.++++..++.+.....|.
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 127 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE 127 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHh
Confidence 9999999875 9999986421 11 24567888899988877665443
No 156
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.90 E-value=8.6e-24 Score=188.67 Aligned_cols=123 Identities=20% Similarity=0.312 Sum_probs=105.6
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|+++.|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 349999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eecCcc-ccccchhhhcCCCC---------C--CCHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPT-LFRGSVRTNLDPLG---------M--YSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~-lf~~Ti~eNi~~~~---------~--~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++. .+..|++||+.++. . ..++++.++++..++.+.....|.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS 136 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 999986 46689999996531 0 123468889999999877665544
No 157
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8e-24 Score=189.69 Aligned_cols=126 Identities=21% Similarity=0.336 Sum_probs=108.4
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..|+++||+++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 36999999999963 3499999999999999999999999999999999999999999999999999888888888899
Q ss_pred eEeecCccccc-cchhhhcCCCC--C---------CCHHHHHHHHHHcCccHHHhhCccc
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPLG--M---------YSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~~--~---------~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++|++.+|. .|++||+.+.. . ..+++++++++..++.++....|..
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT 143 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc
Confidence 99999999875 69999996431 0 1234678899999998877665543
No 158
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3e-24 Score=192.67 Aligned_cols=124 Identities=30% Similarity=0.423 Sum_probs=103.9
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh----hhh
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTK 309 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~ 309 (367)
.++|++++|.+ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56788888853 348999999999999999999999999999999999999999999999999988765543 468
Q ss_pred ceEeecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 310 LSIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 310 i~~V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++|++|++.+|+ .|++||+.+.. .. .++++.++++..++.+++...|..|
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 161 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL 161 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccC
Confidence 999999999985 69999996421 11 2356888999999998888877644
No 159
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.90 E-value=6.2e-24 Score=182.22 Aligned_cols=122 Identities=20% Similarity=0.289 Sum_probs=103.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|+++.|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..++++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 478999999964 34999999999999999999999999999999999999999999999999988765 456789999
Q ss_pred eecCccccc-cchhhhcCCCC---CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~---~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.+|+ .|++||+.+.. ...++++.++++..++.++....|.
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 126 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA 126 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChh
Confidence 999999886 69999996431 1124568899999999887765443
No 160
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=187.36 Aligned_cols=120 Identities=28% Similarity=0.399 Sum_probs=101.7
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC--CC
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MG 302 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~--~~ 302 (367)
.+.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 346999999999964 349999999999999999999999999999999999996 589999999999863 45
Q ss_pred hhhhhhhceEeecCccccccchhhhcCCCC----CCC----HHHHHHHHHHcCccHH
Q 017723 303 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYS----DNEIWEAMEKCQLKAT 351 (367)
Q Consensus 303 ~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~----~~~----~e~i~~al~~a~l~~~ 351 (367)
...+|++++|++|++.+|+.|++||+.+.. ..+ +++++++++.+++.+.
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 145 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE 145 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh
Confidence 567889999999999999999999997531 122 3567889999988543
No 161
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1e-23 Score=188.10 Aligned_cols=118 Identities=25% Similarity=0.368 Sum_probs=99.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~--~~~~ 304 (367)
-|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999964 3499999999999999999999999999999999999997 48999999998853 3455
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---C-C----CHHHHHHHHHHcCccHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-Y----SDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~-~----~~e~i~~al~~a~l~~~ 351 (367)
.+|++++||+|++.+|+.|++|||.++. . . .++++.++++.+++.+.
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 139 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE 139 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 7788999999999999999999997531 1 1 13467778888887543
No 162
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=9.1e-24 Score=186.82 Aligned_cols=124 Identities=24% Similarity=0.366 Sum_probs=104.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC--hhhhhhhc
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL 310 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~r~~i 310 (367)
|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 34999999999999999999999999999999999999999999999999987643 35678899
Q ss_pred eEeecCccccc-cchhhhcCCCC----CC----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPLG----MY----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~~----~~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++|++.+|. .|++||+.+.. .. .++++.++++..++.+.....|..
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSE 136 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhh
Confidence 99999999886 59999996531 11 234577888888888777665543
No 163
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=188.03 Aligned_cols=118 Identities=24% Similarity=0.455 Sum_probs=100.5
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC--CCh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 303 (367)
..|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 36999999999964 349999999999999999999999999999999999998 689999999998863 456
Q ss_pred hhhhhhceEeecCccccccchhhhcCCCCC---C---CHHHHHHHHHHcCccH
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y---SDNEIWEAMEKCQLKA 350 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~---~---~~e~i~~al~~a~l~~ 350 (367)
..+|+.++||+|++.+|+.|++||+.+... . .++++.++++.+++.+
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 142 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD 142 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc
Confidence 778889999999999999999999975321 1 2356777888887754
No 164
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.90 E-value=7.2e-24 Score=186.57 Aligned_cols=123 Identities=30% Similarity=0.532 Sum_probs=102.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 311 (367)
|+++||+++|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.+.+ |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999963 349999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~ 357 (367)
|++|++.+|++ |++||+.+.. ..+ .+++.++++..++.+.....|.
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 132 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKAS 132 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 99999999987 9999996421 111 2356778888888766555443
No 165
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=9.5e-24 Score=190.07 Aligned_cols=124 Identities=28% Similarity=0.447 Sum_probs=103.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC--CChhhhhhhc
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL 310 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i 310 (367)
|+++||+++|++. +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999633 349999999999999999999999999999999999999999999999999852 2345678999
Q ss_pred eEeecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcc
Q 017723 311 SIIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 311 ~~V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~ 357 (367)
+|++|++ .+|+.|++||+.++. ..+ .+++.++++..++.++....|.
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 136 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH 136 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChh
Confidence 9999998 578999999996431 112 2467889999999877665544
No 166
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=195.95 Aligned_cols=125 Identities=21% Similarity=0.367 Sum_probs=108.2
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..|+++|++++|++ ..+|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.++ .++++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999953 349999999999999999999999999999999999999999999999999987654 57899
Q ss_pred eEeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+||+|++.+|+. |++|||.++. ..+ .+++.++++..++.++.++.|..|
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~L 150 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL 150 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 999999999975 9999997641 122 346788999999998888877654
No 167
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.2e-23 Score=176.07 Aligned_cols=96 Identities=42% Similarity=0.803 Sum_probs=89.6
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++..+.+++|+||++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+|+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996543359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred eecCccccccchhhhc
Q 017723 313 IPQEPTLFRGSVRTNL 328 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi 328 (367)
++|++.+|+.|++||+
T Consensus 81 ~~~~~~~~~~t~~e~l 96 (171)
T cd03228 81 VPQDPFLFSGTIRENI 96 (171)
T ss_pred EcCCchhccchHHHHh
Confidence 9999999999999996
No 168
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.90 E-value=7.1e-24 Score=183.21 Aligned_cols=121 Identities=24% Similarity=0.357 Sum_probs=100.3
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh----hhhhhhc
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTKL 310 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~~i 310 (367)
++||++.|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999963 349999999999999999999999999999999999999999999999999765542 2457789
Q ss_pred eEeecCccccc-cchhhhcCCCC---C----CCHHHHHHHHHHcCccHHHhhCcc
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPLG---M----YSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~~---~----~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
+|++|++.+|+ .|++||+.+.. . ..++++.++++..++.+.....+.
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 133 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIY 133 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChh
Confidence 99999999997 69999996421 1 124567889999998776665543
No 169
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=184.38 Aligned_cols=121 Identities=29% Similarity=0.451 Sum_probs=100.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh-hhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 310 (367)
.|+++|++++|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999963 34999999999999999999999999999999999999999999999999998877644 57789
Q ss_pred eEeecCcccccc-chhhhcCCCC----CCC----HHHHHHHHHHcCccHHHhh
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~----~~~----~e~i~~al~~a~l~~~i~~ 354 (367)
+|++|++.+|++ |++||+.+.. ..+ ++++.++++..++.+....
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 133 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhc
Confidence 999999999884 9999997531 112 2356777777777655443
No 170
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=187.28 Aligned_cols=119 Identities=24% Similarity=0.408 Sum_probs=100.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~--~~~~ 304 (367)
.|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999963 349999999999999999999999999999999999975 689999999999865 3445
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---C-----CCHHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-----YSDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~-----~~~e~i~~al~~a~l~~~i 352 (367)
.+|++++||+|++.+|+.|++||+.++. . ..++++.++++.+++.+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 139 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV 139 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh
Confidence 7788999999999999999999997431 1 1245678889999886644
No 171
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.4e-23 Score=180.84 Aligned_cols=122 Identities=23% Similarity=0.367 Sum_probs=104.4
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999964 34999999999999999999999999999999999999999999999999987654 457788999
Q ss_pred eecCccccc-cchhhhcCCCC----CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~----~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.+++ .|++||+.+.. ..+++++.++++..++.++....+.
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 128 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVR 128 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChh
Confidence 999999876 69999996531 1345688899999999877665443
No 172
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.90 E-value=1.3e-23 Score=185.40 Aligned_cols=119 Identities=29% Similarity=0.402 Sum_probs=98.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999963 34999999999999999999999999999999999999999999999999998776543 468999
Q ss_pred eecCccc-cccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhh
Q 017723 313 IPQEPTL-FRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 313 V~Q~~~l-f~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~ 354 (367)
++|++.+ +..|++||+.+.. ..+ ++++.++++..++.+....
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 128 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADD 128 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcC
Confidence 9999988 5689999996431 122 3456777888777665443
No 173
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=1.9e-23 Score=185.02 Aligned_cols=122 Identities=25% Similarity=0.390 Sum_probs=102.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 311 (367)
|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.+.. |+.++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 349999999999999999999999999999999999999999999999999988776644 45799
Q ss_pred EeecCcccccc-chhhhcCCCCC---------------CCHHHHHHHHHHcCccHHHhhCc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLGM---------------YSDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~~---------------~~~e~i~~al~~a~l~~~i~~lp 356 (367)
|++|++.+|++ |++||+.+... ..++++.++++..++.+.....|
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 141 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA 141 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 99999999987 99999965311 12346788888888876655443
No 174
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.90 E-value=7.3e-24 Score=195.90 Aligned_cols=113 Identities=27% Similarity=0.369 Sum_probs=100.2
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh----hhhceEeecCccccc-
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFR- 321 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~i~~V~Q~~~lf~- 321 (367)
+.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||.++.+++...+ |++++||+|++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 349999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred cchhhhcCCCCC---C----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 322 GSVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 322 ~Ti~eNi~~~~~---~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
.|++|||.++.. . .++++.++|+.++|++++...|.-|
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~L 130 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDEL 130 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhC
Confidence 599999975311 1 2467889999999999988877643
No 175
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.90 E-value=1.7e-23 Score=187.95 Aligned_cols=124 Identities=23% Similarity=0.392 Sum_probs=103.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh---hhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~ 308 (367)
-|+++||+++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5999999999953 3499999999999999999999999999999999999999999999999998876653 3577
Q ss_pred hceEeecCcccccc-chhhhcCCC----CCCC----HHHHHHHHHHcCccHHHhhCcc
Q 017723 309 KLSIIPQEPTLFRG-SVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~-Ti~eNi~~~----~~~~----~e~i~~al~~a~l~~~i~~lp~ 357 (367)
.++|++|++.+|++ |++||+.+. ...+ ++++.++++..++.+.....|.
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 142 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPS 142 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 89999999999986 999999642 1122 2356778888888776655443
No 176
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=186.64 Aligned_cols=121 Identities=24% Similarity=0.376 Sum_probs=102.4
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCC--CC
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MG 302 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~--~~ 302 (367)
.+.|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 347999999999963 3499999999999999999999999999999999999985 89999999999865 34
Q ss_pred hhhhhhhceEeecCccccccchhhhcCCCC---CC------CHHHHHHHHHHcCccHHH
Q 017723 303 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY------SDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 303 ~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~------~~e~i~~al~~a~l~~~i 352 (367)
...+|+.++||+|++.+|+.|++||+.+.. .. .++++.++++.+++.+++
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV 153 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh
Confidence 567888999999999999999999997421 11 134578899999987644
No 177
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=185.82 Aligned_cols=119 Identities=32% Similarity=0.469 Sum_probs=101.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCCChhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLKDL 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~~~~~~ 306 (367)
.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3499999999999999999999999999999999999984 69999999999988888889
Q ss_pred hhhceEeecCcccc-ccchhhhcCCCC---C--CC----HHHHHHHHHHcCccHHH
Q 017723 307 RTKLSIIPQEPTLF-RGSVRTNLDPLG---M--YS----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 307 r~~i~~V~Q~~~lf-~~Ti~eNi~~~~---~--~~----~e~i~~al~~a~l~~~i 352 (367)
|+.++||+|++.+| +.|++||+.+.. . .+ +++++++++.+++.+.+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 136 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV 136 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch
Confidence 99999999999755 679999996421 1 11 35678889999886543
No 178
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.6e-23 Score=186.51 Aligned_cols=120 Identities=25% Similarity=0.415 Sum_probs=101.1
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC--CCh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 303 (367)
..|+++|++++|+. +++|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 359999999999999999999999999999999999997 579999999999864 345
Q ss_pred hhhhhhceEeecCccccccchhhhcCCCC---C-C----CHHHHHHHHHHcCccHHH
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-Y----SDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~-~----~~e~i~~al~~a~l~~~i 352 (367)
..+|+.++||+|++.+|+.|++||+.++. . . .++++.++++..++.+.+
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i 153 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV 153 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh
Confidence 56788999999999999999999997531 1 1 234577788898886544
No 179
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.7e-23 Score=181.23 Aligned_cols=121 Identities=24% Similarity=0.391 Sum_probs=102.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++||+++|++ . ..|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 689999999963 2 239999999999999999999999999999999999999999999999877654 3568999
Q ss_pred eecCcccccc-chhhhcCCCC-C------CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLG-M------YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~-~------~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++|++.+|++ |++||+.+.. . ..++++.++++..++.+.+...|..|
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 130 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQL 130 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccC
Confidence 9999999985 9999997531 1 12457899999999998888777543
No 180
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=2e-23 Score=183.51 Aligned_cols=96 Identities=32% Similarity=0.572 Sum_probs=87.4
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh-hhhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i~ 311 (367)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... ++++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999964 34999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EeecCcccccc-chhhhcCC
Q 017723 312 IIPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~ 330 (367)
|++|++.+|+. |++||+.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~ 98 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLT 98 (230)
T ss_pred EeccCCcccCCCcHHHHHHH
Confidence 99999999986 99999964
No 181
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.2e-23 Score=184.98 Aligned_cols=123 Identities=30% Similarity=0.414 Sum_probs=105.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|+. +.+++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 478999999964 249999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred eecCcccccc-chhhhcCCCC-------CCCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLG-------MYSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~-------~~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+|++.+|.+ |++||+.+.. ...++++.++++..++.+++...|..+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l 131 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQL 131 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 9999999975 9999986421 112457888999999999888877543
No 182
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.90 E-value=3.2e-23 Score=185.77 Aligned_cols=122 Identities=26% Similarity=0.478 Sum_probs=99.9
Q ss_pred EEEEeeEEEeCCC-------CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh
Q 017723 233 IELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD 305 (367)
Q Consensus 233 I~~~nvsf~Y~~~-------~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~ 305 (367)
|+++||+|+|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 345999999999999999999999999999999999999999999999999998876543
Q ss_pred ---hhhhceEeecCcc--cc-ccchhhhcCCC-----C---CCCHHHHHHHHHHcCcc-HHHhh
Q 017723 306 ---LRTKLSIIPQEPT--LF-RGSVRTNLDPL-----G---MYSDNEIWEAMEKCQLK-ATISR 354 (367)
Q Consensus 306 ---~r~~i~~V~Q~~~--lf-~~Ti~eNi~~~-----~---~~~~e~i~~al~~a~l~-~~i~~ 354 (367)
+|+.++||+|++. ++ ..|++||+.+. . ...++++.++++..++. +....
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 6788999999983 44 47999998421 1 12345678889998885 44433
No 183
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.5e-23 Score=188.45 Aligned_cols=126 Identities=34% Similarity=0.528 Sum_probs=103.2
Q ss_pred eEEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC----Chh
Q 017723 232 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~----~~~ 304 (367)
.|+++|++++|++.. ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996421 3599999999999999999999999999999999999999999999999998653 245
Q ss_pred hhhhhceEeecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCcc-HHHhhCcc
Q 017723 305 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLK-ATISRLPM 357 (367)
Q Consensus 305 ~~r~~i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~-~~i~~lp~ 357 (367)
..++.++|++|+| .+|+.|++||+.++. ..+ ++++.++++.+++. ++....|.
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 144 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPF 144 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcc
Confidence 6778999999998 588899999996421 122 34578888999986 55555443
No 184
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.8e-23 Score=188.42 Aligned_cols=125 Identities=26% Similarity=0.380 Sum_probs=100.4
Q ss_pred cceEEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC----C-
Q 017723 230 HGRIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----M- 301 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~----~- 301 (367)
.+.|+++|++++|++.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999996432 249999999999999999999999999999999999999999999999998852 2
Q ss_pred ChhhhhhhceEeecCc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCcc-HHHhh
Q 017723 302 GLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISR 354 (367)
Q Consensus 302 ~~~~~r~~i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~~----e~i~~al~~a~l~-~~i~~ 354 (367)
+...+|+.++||+|++ .+|+.|++||+.+.. ..+. +++.++++..++. ++...
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 3467788999999998 478889999997531 1222 3455677777773 44433
No 185
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.90 E-value=4.8e-23 Score=180.91 Aligned_cols=125 Identities=26% Similarity=0.515 Sum_probs=98.7
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh---hhhh
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLR 307 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r 307 (367)
|+++||+++|++.. ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996431 259999999999999999999999999999999999999999999999999988764 5778
Q ss_pred hhceEeecCc--ccc-ccchhhhcCCC----C-CCCHHH----HHHHHHHcCcc-HHHhhCcc
Q 017723 308 TKLSIIPQEP--TLF-RGSVRTNLDPL----G-MYSDNE----IWEAMEKCQLK-ATISRLPM 357 (367)
Q Consensus 308 ~~i~~V~Q~~--~lf-~~Ti~eNi~~~----~-~~~~e~----i~~al~~a~l~-~~i~~lp~ 357 (367)
++++|++|++ .++ ..|++||+.+. . ...+++ ..++++..++. +.....|.
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPH 144 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCch
Confidence 8999999999 344 57999998532 1 112221 13567777774 45544443
No 186
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-23 Score=185.33 Aligned_cols=123 Identities=24% Similarity=0.320 Sum_probs=101.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 310 (367)
-|+++|++++|++ ..+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999963 349999999999999999999999999999999999999999999999999988776655 4469
Q ss_pred eEeecCcccccc-chhhhcCCCCC-------------------C---CHHHHHHHHHHcCccHHHhhCc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLGM-------------------Y---SDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~~-------------------~---~~e~i~~al~~a~l~~~i~~lp 356 (367)
+|++|++.+|++ |++||+.++.. . ..+++.++++..++.+....-|
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh
Confidence 999999999986 99999975210 0 1134666777887776655444
No 187
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.90 E-value=2.9e-23 Score=183.07 Aligned_cols=121 Identities=27% Similarity=0.407 Sum_probs=102.4
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999642 49999999999999999999999999999999999999999999999999876543 4778999
Q ss_pred eecCcccccc-chhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.+|++ |++||+.+.. .. .++++.++++..++.++.+..|.
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh
Confidence 9999999975 9999996432 11 23567888898888877766553
No 188
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.4e-23 Score=187.25 Aligned_cols=122 Identities=26% Similarity=0.395 Sum_probs=100.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC--CCChhhhhhhc
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTKL 310 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~i 310 (367)
|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999963 34999999999999999999999999999999999999999999999999985 33445778899
Q ss_pred eEeecCcc--ccccchhhhcCCC---CCCC----HHHHHHHHHHcCccHHHhhCc
Q 017723 311 SIIPQEPT--LFRGSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 311 ~~V~Q~~~--lf~~Ti~eNi~~~---~~~~----~e~i~~al~~a~l~~~i~~lp 356 (367)
+||+|++. ++..|+.||+.+. ...+ .+++.++++..++.++....|
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 134 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI 134 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc
Confidence 99999986 6778999998642 1122 235677888888877665443
No 189
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=4.9e-23 Score=184.59 Aligned_cols=121 Identities=21% Similarity=0.342 Sum_probs=103.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC--------CceEEECCeecCCCChh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--------NGRILIDGLDICSMGLK 304 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~--------~G~I~~~g~~i~~~~~~ 304 (367)
|+++|++++|+. +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 689999999953 34999999999999999999999999999999999999998 99999999999888888
Q ss_pred hhhhhceEeecCcc-ccccchhhhcCCCC-C-------C---CHHHHHHHHHHcCccHHHhhC
Q 017723 305 DLRTKLSIIPQEPT-LFRGSVRTNLDPLG-M-------Y---SDNEIWEAMEKCQLKATISRL 355 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~-lf~~Ti~eNi~~~~-~-------~---~~e~i~~al~~a~l~~~i~~l 355 (367)
.+++.++||+|++. +|+.|++||+.+.. . . .+++++++++..++.+....-
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD 142 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC
Confidence 88889999999986 67899999996531 1 1 234578889999887765543
No 190
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.89 E-value=3.4e-23 Score=184.97 Aligned_cols=120 Identities=26% Similarity=0.429 Sum_probs=101.4
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC--------
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-------- 302 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~-------- 302 (367)
+.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 46999999999963 34999999999999999999999999999999999999999999999999886421
Q ss_pred -----hhhhhhhceEeecCcccccc-chhhhcCCCC----CC----CHHHHHHHHHHcCccHHH
Q 017723 303 -----LKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MY----SDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 303 -----~~~~r~~i~~V~Q~~~lf~~-Ti~eNi~~~~----~~----~~e~i~~al~~a~l~~~i 352 (367)
...+|+.++||+|++.+|+. |++||+.++. .. .++++.++++..++.+..
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 145 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA 145 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh
Confidence 34678899999999999975 9999996421 11 235678889999998765
No 191
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.4e-23 Score=174.50 Aligned_cols=95 Identities=35% Similarity=0.613 Sum_probs=87.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC--hhhhhhhc
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL 310 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~r~~i 310 (367)
|+++|++++|++ +++++++||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+++ ...+++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 34999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred eEeecCccccc-cchhhhcC
Q 017723 311 SIIPQEPTLFR-GSVRTNLD 329 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~ 329 (367)
+|++|++.+|. .|++||+.
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred EEEecCCccCCCCCHHHhee
Confidence 99999999986 49999984
No 192
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.89 E-value=2.3e-23 Score=189.91 Aligned_cols=122 Identities=27% Similarity=0.426 Sum_probs=101.6
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 35999999999963 34999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred eEeecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhC
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRL 355 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~l 355 (367)
+||||++.+|. .|++||+.+.. ..+ .+++.++++..++.+.....
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 135 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAK 135 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCc
Confidence 99999999986 69999996421 122 23566778888776654443
No 193
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.2e-23 Score=173.81 Aligned_cols=94 Identities=35% Similarity=0.673 Sum_probs=86.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
++++|++++|+. . ++|+++||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK-K-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC-e-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 468999999964 2 4999999999999999999999999999999999999999999999999988765 677889999
Q ss_pred eecCcccccc-chhhhcC
Q 017723 313 IPQEPTLFRG-SVRTNLD 329 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~ 329 (367)
++|++.+|.+ |++||+.
T Consensus 78 ~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 78 LPEEPSLYENLTVRENLK 95 (173)
T ss_pred EecCCccccCCcHHHHhh
Confidence 9999999986 9999974
No 194
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=185.21 Aligned_cols=119 Identities=25% Similarity=0.393 Sum_probs=99.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-----CceEEECCeecC--CCChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDIC--SMGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-----~G~I~~~g~~i~--~~~~~ 304 (367)
.|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 34999999999999999999999999999999999999974 999999999987 45556
Q ss_pred hhhhhceEeecCcccccc-chhhhcCCC---CCC--C----HHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPL---GMY--S----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~-Ti~eNi~~~---~~~--~----~e~i~~al~~a~l~~~i 352 (367)
.+|++++|++|++.+|+. |++||+.+. ... + ++++.++++..++.+.+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 139 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV 139 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch
Confidence 788899999999999976 999999642 111 1 24577888888875443
No 195
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.9e-23 Score=178.40 Aligned_cols=98 Identities=26% Similarity=0.366 Sum_probs=88.1
Q ss_pred eEEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC---CCCceEEECCeecCCCChhhh
Q 017723 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDL 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~ 306 (367)
.+.++||+|.|+.. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999753 4569999999999999999999999999999999999999 89999999999988764 457
Q ss_pred hhhceEeecCcccccc-chhhhcCC
Q 017723 307 RTKLSIIPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 307 r~~i~~V~Q~~~lf~~-Ti~eNi~~ 330 (367)
+++++|++|++.+|++ |++||+.+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~ 106 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDF 106 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhh
Confidence 8899999999998875 99999964
No 196
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=184.54 Aligned_cols=116 Identities=28% Similarity=0.415 Sum_probs=97.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~--~~~~ 304 (367)
.|+++|++|+|++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 349999999999999999999999999999999999997 479999999998864 3445
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---CC-----CHHHHHHHHHHcCcc
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-----SDNEIWEAMEKCQLK 349 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~-----~~e~i~~al~~a~l~ 349 (367)
.+|+.++|++|++.+|+.|++||+.+.. .. .++++.++++..+++
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIW 134 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC
Confidence 6788999999999999999999997431 11 124567788888875
No 197
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.89 E-value=3.4e-23 Score=184.30 Aligned_cols=122 Identities=29% Similarity=0.424 Sum_probs=100.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC--------hh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--------LK 304 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~--------~~ 304 (367)
|+++||+++|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 889999999963 34999999999999999999999999999999999999999999999999987542 34
Q ss_pred hhhhhceEeecCccccc-cchhhhcCCC----CCCC----HHHHHHHHHHcCccHHHhhCc
Q 017723 305 DLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~-~Ti~eNi~~~----~~~~----~e~i~~al~~a~l~~~i~~lp 356 (367)
.+|+.++||+|++.+|+ .|++||+.++ ...+ ++++.++++..++.+.....|
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 142 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP 142 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh
Confidence 67889999999999986 6999999642 1112 245677788888876654433
No 198
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=6.1e-23 Score=177.23 Aligned_cols=117 Identities=26% Similarity=0.316 Sum_probs=99.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|+++.|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. +|+.++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 789999999964 349999999999999999999999999999999999999999999999998753 22 7889999
Q ss_pred eecCcccc-ccchhhhcCCCC---CCCHHHHHHHHHHcCccHHHhh
Q 017723 313 IPQEPTLF-RGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 313 V~Q~~~lf-~~Ti~eNi~~~~---~~~~e~i~~al~~a~l~~~i~~ 354 (367)
++|++.++ +.|++||+.+.. ...++++.++++..++.++...
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 123 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL 123 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC
Confidence 99988775 679999986421 2345678999999999876543
No 199
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.3e-23 Score=183.64 Aligned_cols=119 Identities=22% Similarity=0.272 Sum_probs=99.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999964 3499999999999999999999999999999999999999999999999988643 246899
Q ss_pred eecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++|++.+|+ .|++||+.+.. ..+ ++++.++++..++.+.....|..
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 128 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQ 128 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhh
Confidence 999999987 59999996531 112 34678899999998776655543
No 200
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.9e-23 Score=181.27 Aligned_cols=98 Identities=27% Similarity=0.470 Sum_probs=89.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh-hhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 310 (367)
-|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+... +++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999963 34999999999999999999999999999999999999999999999999998887654 57789
Q ss_pred eEeecCcccccc-chhhhcCCC
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPL 331 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~ 331 (367)
+|++|++.+|++ |++||+.+.
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~ 104 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMG 104 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHh
Confidence 999999999985 999999753
No 201
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=3.5e-23 Score=188.60 Aligned_cols=123 Identities=20% Similarity=0.362 Sum_probs=104.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.++++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +...+|++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 3789999999953 349999999999999999999999999999999999999999999999999876 4457888999
Q ss_pred EeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~ 357 (367)
|+||++.+|++ |++||+.+.. ..+ .+++.++++..++.+.....+.
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 132 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG 132 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchh
Confidence 99999999976 9999996321 112 3568888999999877655543
No 202
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.8e-23 Score=184.77 Aligned_cols=120 Identities=23% Similarity=0.376 Sum_probs=100.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~--~~~~ 304 (367)
.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+.+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 6999999999963 3499999999999999999999999999999999999986 48999999998864 3456
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC----CCC----HHHHHHHHHHcCccHHHh
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~----~~~----~e~i~~al~~a~l~~~i~ 353 (367)
.++++++||+|++.+|+.|++||+.+.. ..+ ++++.++++.+++.+++.
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 141 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK 141 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh
Confidence 7788999999999999999999996421 112 245678888888865543
No 203
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.89 E-value=4.5e-23 Score=188.19 Aligned_cols=122 Identities=25% Similarity=0.357 Sum_probs=100.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999963 3499999999999999999999999999999999999999999999999998654 356788999
Q ss_pred EeecCccccc-cchhhhcCCC-C--CCCH----HHHHHHHHHcCccHHHhhCc
Q 017723 312 IIPQEPTLFR-GSVRTNLDPL-G--MYSD----NEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 312 ~V~Q~~~lf~-~Ti~eNi~~~-~--~~~~----e~i~~al~~a~l~~~i~~lp 356 (367)
||+|++.+|+ .|++||+.+. . ..+. +++.++++..++.+.....+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~ 133 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV 133 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch
Confidence 9999999885 6999999632 1 1222 34566777887766554443
No 204
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.5e-23 Score=182.92 Aligned_cols=119 Identities=20% Similarity=0.351 Sum_probs=99.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC--C---CCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~--p---~~G~I~~~g~~i~~--~~~~ 304 (367)
-|+++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999963 349999999999999999999999999999999999997 3 58999999999864 3455
Q ss_pred hhhhhceEeecCccccccchhhhcCCCCC----CC----HHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YS----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~----~~----~e~i~~al~~a~l~~~i 352 (367)
.+|++++|++|++.+|+.|++||+.+... .+ ++++.++++..++.+++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 145 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV 145 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh
Confidence 77889999999999999999999975311 12 23466678888886544
No 205
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7e-23 Score=182.32 Aligned_cols=119 Identities=26% Similarity=0.418 Sum_probs=99.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-----CceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-----~G~I~~~g~~i~~~--~~~ 304 (367)
.|+++|++|+|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+. +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999963 34999999999999999999999999999999999999997 69999999988653 345
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---CC-C----HHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~-~----~e~i~~al~~a~l~~~i 352 (367)
.+|+.++||+|++.+|+.|++||+.+.. .. . ++++.++++..++.+.+
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 137 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh
Confidence 7789999999999999999999997531 11 1 24466677777776544
No 206
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.89 E-value=4.3e-23 Score=180.76 Aligned_cols=95 Identities=25% Similarity=0.417 Sum_probs=86.9
Q ss_pred EEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC---CCCceEEECCeecCCCChhhhh
Q 017723 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLR 307 (367)
Q Consensus 233 I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~r 307 (367)
++|+||+|+|++. .+.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999765 3569999999999999999999999999999999999999 99999999999875 35678
Q ss_pred hhceEeecCcccccc-chhhhcCC
Q 017723 308 TKLSIIPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~~-Ti~eNi~~ 330 (367)
+.++|++|++.+|++ |++||+.+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~ 104 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTY 104 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHH
Confidence 899999999999987 99999964
No 207
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9e-23 Score=183.27 Aligned_cols=117 Identities=25% Similarity=0.461 Sum_probs=98.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~~--~~~ 304 (367)
-|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 349999999999999999999999999999999999865 7899999999998653 345
Q ss_pred hhhhhceEeecCccccccchhhhcCCC----CC----CCHHHHHHHHHHcCccH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL----GM----YSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~----~~----~~~e~i~~al~~a~l~~ 350 (367)
.++++++|++|++.+|++|++||+.+. .. ..++++.++++..++.+
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 152 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD 152 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc
Confidence 678899999999999999999999742 11 11345777888888753
No 208
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.4e-23 Score=182.50 Aligned_cols=119 Identities=25% Similarity=0.416 Sum_probs=99.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~--~~~~ 304 (367)
.|+++||+++|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+ .+..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 5899999999964 2499999999999999999999999999999999999863 68999999999875 3456
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---CC-----CHHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-----SDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~-----~~e~i~~al~~a~l~~~i 352 (367)
.+|+.++||+|++.+|+.|++||+.+.. .. .++++.++++.+++.+.+
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 136 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV 136 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh
Confidence 7788999999999999999999997531 11 235677788888876443
No 209
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.2e-23 Score=192.43 Aligned_cols=125 Identities=27% Similarity=0.383 Sum_probs=101.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh----hh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RT 308 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~ 308 (367)
++++++.-.|.. ..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ |+
T Consensus 29 ~~~~~~~~~~~~--~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~ 106 (400)
T PRK10070 29 LSKEQILEKTGL--SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRK 106 (400)
T ss_pred ccHHHHHhhcCC--eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhC
Confidence 444444444421 237999999999999999999999999999999999999999999999999998876654 46
Q ss_pred hceEeecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 309 KLSIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 309 ~i~~V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+++||+|++.+|+ .|++||+.+.. .. .++++.++++.+++.++....|..|
T Consensus 107 ~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~L 165 (400)
T PRK10070 107 KIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDEL 165 (400)
T ss_pred CEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccC
Confidence 8999999999997 59999997531 11 2356888999999999888877644
No 210
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.4e-23 Score=182.40 Aligned_cols=119 Identities=23% Similarity=0.342 Sum_probs=99.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 304 (367)
-|+++|++|+|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.+. +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999953 3499999999999999999999999999999999999763 489999999999876 446
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---CC-C----HHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~-~----~e~i~~al~~a~l~~~i 352 (367)
..|+.++|++|++.+|+.|++||+.+.. .. + ++++.++++.+++.+.+
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 139 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV 139 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh
Confidence 6788999999999999999999997531 11 1 23567778887775443
No 211
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.89 E-value=9.3e-23 Score=187.33 Aligned_cols=126 Identities=30% Similarity=0.466 Sum_probs=102.9
Q ss_pred eEEEEeeEEEeCCC-----------CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 232 RIELEDLKVRYRPN-----------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~-----------~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
-|+++|++.+|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 2358999999999999999999999999999999999999999999999999998
Q ss_pred CChhh---hhhhceEeecCc--ccc-ccchhhhcCCC-----CCCC----HHHHHHHHHHcCcc-HHHhhCcc
Q 017723 301 MGLKD---LRTKLSIIPQEP--TLF-RGSVRTNLDPL-----GMYS----DNEIWEAMEKCQLK-ATISRLPM 357 (367)
Q Consensus 301 ~~~~~---~r~~i~~V~Q~~--~lf-~~Ti~eNi~~~-----~~~~----~e~i~~al~~a~l~-~~i~~lp~ 357 (367)
++.+. +|++++||+|+| .++ ..|+.|||... ...+ ++++.++++.+++. +.....|.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcc
Confidence 87654 678899999999 477 57999998521 1123 34567788899884 45555554
No 212
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.9e-23 Score=182.31 Aligned_cols=120 Identities=26% Similarity=0.445 Sum_probs=100.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~~--~~~ 304 (367)
.|+++||++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++.+. +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 4889999999963 349999999999999999999999999999999999875 4899999999998753 456
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---C-CC----HHHHHHHHHHcCccHHHh
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YS----DNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~-~~----~e~i~~al~~a~l~~~i~ 353 (367)
.+|+.++|++|++.+|+.|++||+.+.. . .+ ++++.++++.+++.+++.
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 137 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH
Confidence 7889999999999999999999997431 1 12 245677888988877654
No 213
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=183.82 Aligned_cols=119 Identities=22% Similarity=0.350 Sum_probs=101.1
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC--CCh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 303 (367)
..|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35999999999964 349999999999999999999999999999999999997 689999999999864 345
Q ss_pred hhhhhhceEeecCccccccchhhhcCCCC-----C-CCHHHHHHHHHHcCccHH
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG-----M-YSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~-----~-~~~e~i~~al~~a~l~~~ 351 (367)
..+|+.++||+|++.+|+.|++||+.+.. + ..+++++++++..++.+.
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 169 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDE 169 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCch
Confidence 67788999999999999999999996421 1 124578889999888543
No 214
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.6e-23 Score=183.33 Aligned_cols=121 Identities=21% Similarity=0.355 Sum_probs=101.6
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCC--CC
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MG 302 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~--~~ 302 (367)
.+.|+++|++++|++ +.+|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 346999999999953 3499999999999999999999999999999999999984 89999999999865 34
Q ss_pred hhhhhhhceEeecCccccccchhhhcCCC-C--C--C---CHHHHHHHHHHcCccHHH
Q 017723 303 LKDLRTKLSIIPQEPTLFRGSVRTNLDPL-G--M--Y---SDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 303 ~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~-~--~--~---~~e~i~~al~~a~l~~~i 352 (367)
...+|+.++|++|++.+|+.|++||+.+. . . . .++++.++++.+++.+.+
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 158 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV 158 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH
Confidence 55778999999999999999999999643 1 1 1 134578888888887544
No 215
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.89 E-value=1.1e-22 Score=182.30 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=103.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCC-----Ch
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSM-----GL 303 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~-----~~ 303 (367)
-|+++||++.|+. ..+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 34999999999999999999999999999999999999986 49999999988654 23
Q ss_pred hhhhhhceEeecCccccc-cchhhhcCCCC---------------CCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 304 KDLRTKLSIIPQEPTLFR-GSVRTNLDPLG---------------MYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~-~Ti~eNi~~~~---------------~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
..+++.++|++|++.+|+ .|++||+.+.. +..++++.++++..++.+.++..|..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 567888999999999888 59999996431 01234688899999998777665543
No 216
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.9e-23 Score=181.84 Aligned_cols=119 Identities=25% Similarity=0.401 Sum_probs=100.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecC-CCChhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC-SMGLKD 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~-~~~~~~ 305 (367)
.++++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999963 3499999999999999999999999999999999999986 5999999999985 455677
Q ss_pred hhhhceEeecCccccccchhhhcCCCC---CC-C----HHHHHHHHHHcCccHHH
Q 017723 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~-~----~e~i~~al~~a~l~~~i 352 (367)
+|+.++|++|++.+|+.|++||+.+.. .. + ++++.++++.+++.+.+
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh
Confidence 889999999999999999999997531 11 1 23556778888876544
No 217
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=182.10 Aligned_cols=120 Identities=20% Similarity=0.381 Sum_probs=100.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~--~~~~ 304 (367)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5999999999963 249999999999999999999999999999999999986 479999999998853 4556
Q ss_pred hhhhhceEeecCccccccchhhhcCCCCC---C---CHHHHHHHHHHcCccHHHh
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y---SDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~---~---~~e~i~~al~~a~l~~~i~ 353 (367)
.+|++++||+|++.+|+.|++||+.+... . .++++.++++.+++.+++.
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 142 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK 142 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH
Confidence 77889999999999999999999975311 1 2345677888888866554
No 218
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.9e-23 Score=181.37 Aligned_cols=119 Identities=24% Similarity=0.390 Sum_probs=99.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 304 (367)
-|+++|++++|++ +.+|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999963 3499999999999999999999999999999999999986 799999999998653 345
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---CC-C----HHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~-~----~e~i~~al~~a~l~~~i 352 (367)
.+|+.++|++|++.+|+.|++||+.+.. .. + ++++.++++.+++.+.+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 137 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV 137 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh
Confidence 6788999999999999999999997531 11 1 24567888998876443
No 219
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=182.48 Aligned_cols=122 Identities=20% Similarity=0.313 Sum_probs=101.8
Q ss_pred CcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecC----
Q 017723 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC---- 299 (367)
Q Consensus 229 ~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~---- 299 (367)
..+.|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 13 ~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3456999999999963 2499999999999999999999999999999999999985 7999999998774
Q ss_pred CCChhhhhhhceEeecCccccccchhhhcCCCC---C-----CCHHHHHHHHHHcCccHHH
Q 017723 300 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-----YSDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 300 ~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~-----~~~e~i~~al~~a~l~~~i 352 (367)
..+...+|+.++|++|++.+|++|++||+.+.. . ..++++.++++.+++.+.+
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 151 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh
Confidence 234457788999999999999999999997531 1 1246778888888876543
No 220
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.5e-22 Score=181.96 Aligned_cols=98 Identities=29% Similarity=0.482 Sum_probs=88.4
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCC--CCh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 303 (367)
.-|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 35999999999964 349999999999999999999999999999999999997 699999999999854 345
Q ss_pred hhhhhhceEeecCccccccchhhhcCC
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDP 330 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~ 330 (367)
..++++++|++|++.+|+.|++||+.+
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~ 127 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTY 127 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHH
Confidence 677889999999999999999999974
No 221
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.6e-23 Score=182.37 Aligned_cols=117 Identities=25% Similarity=0.400 Sum_probs=98.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCCC--hh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG--LK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~~--~~ 304 (367)
.|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999963 3499999999999999999999999999999999999985 7999999999986532 34
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---CCC----HHHHHHHHHHcCccH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKA 350 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~ 350 (367)
.+|+.++||+|++.+|+.|++||+.+.. ..+ ++++.++++.+++.+
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD 142 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc
Confidence 6788999999999999999999996431 122 235677888888754
No 222
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.4e-22 Score=175.86 Aligned_cols=119 Identities=25% Similarity=0.260 Sum_probs=99.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|++ +.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..+++++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 4999999999964 3499999999999999999999999999999999999999999999999988653 3466899
Q ss_pred EeecCcccccc-chhhhcCCC----CCCCHHHHHHHHHHcCccHHHhhC
Q 017723 312 IIPQEPTLFRG-SVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRL 355 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~----~~~~~e~i~~al~~a~l~~~i~~l 355 (367)
|++|++.+|++ |++||+.+. ....++.+.++++..++.+.....
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 134 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTL 134 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCC
Confidence 99999999986 999998542 112345667788888876554443
No 223
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=5.9e-23 Score=175.06 Aligned_cols=112 Identities=29% Similarity=0.456 Sum_probs=93.5
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC--CChhhhhhhceEeecCc--ccccc
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKLSIIPQEP--TLFRG 322 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i~~V~Q~~--~lf~~ 322 (367)
+.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+++.++|++|++ .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 349999999999999999999999999999999999999999999999999852 23446788999999998 57889
Q ss_pred chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 323 SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 323 Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
|++||+.+.. ..+ +++++++++..++.++.+..|..
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 127 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHC 127 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhh
Confidence 9999997531 122 24678889999998877766643
No 224
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7.6e-23 Score=182.31 Aligned_cols=119 Identities=25% Similarity=0.428 Sum_probs=98.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC--C---CCceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~--p---~~G~I~~~g~~i~~~--~~~ 304 (367)
-|+++||+++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999963 349999999999999999999999999999999999954 6 489999999998643 345
Q ss_pred hhhhhceEeecCccccccchhhhcCCC----C-C---CCHHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL----G-M---YSDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~----~-~---~~~e~i~~al~~a~l~~~i 352 (367)
.+|+.++||+|++.+|+.|++||+.+. . . ..++++.++++.+++.+.+
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 138 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV 138 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH
Confidence 678899999999999999999999642 1 1 1234567788888875443
No 225
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.9e-23 Score=178.57 Aligned_cols=124 Identities=27% Similarity=0.387 Sum_probs=105.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe---ecCCCChhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMGLKDLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~---~i~~~~~~~~r~ 308 (367)
.|+++|++..|+.- .+++|||++|+.||.+|+.||||||||||+++|+|+..|+.|.|.+||. |.++. ..-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 47889999888543 3899999999999999999999999999999999999999999999999 55553 34457
Q ss_pred hceEeecCcccc-ccchhhhcCCCCC---------CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 309 KLSIIPQEPTLF-RGSVRTNLDPLGM---------YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 309 ~i~~V~Q~~~lf-~~Ti~eNi~~~~~---------~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+||+|+|+.-|| +.||++||+|+-+ ....++.+.|+.++|..+-++-|..|
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QL 138 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQL 138 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhc
Confidence 899999999987 6799999998641 23457888899999999998888755
No 226
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=9.6e-23 Score=179.52 Aligned_cols=122 Identities=25% Similarity=0.442 Sum_probs=103.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ + +|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999963 3 8999999999999999999999999999999999999999999999999887654 3678999
Q ss_pred eecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++|++.+|+ .|++||+.+.. .. .++++.++++..++.+++...|..|
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 130 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETL 130 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 999999995 79999997421 11 2346788999999988888776543
No 227
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.7e-23 Score=181.67 Aligned_cols=119 Identities=26% Similarity=0.404 Sum_probs=99.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 304 (367)
-|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 3499999999999999999999999999999999999984 899999999988653 345
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC----CC----CHHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG----MY----SDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~----~~----~~e~i~~al~~a~l~~~i 352 (367)
.+|+.++|++|++.+|+.|++||+.+.. .. .+++++++++..++++.+
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 136 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV 136 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh
Confidence 6788999999999999999999997421 11 234567788888886543
No 228
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.88 E-value=9.2e-23 Score=187.91 Aligned_cols=120 Identities=25% Similarity=0.433 Sum_probs=99.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999963 34999999999999999999999999999999999999999999999999987654 56788999
Q ss_pred EeecCcccc-ccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhh
Q 017723 312 IIPQEPTLF-RGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 312 ~V~Q~~~lf-~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~ 354 (367)
|+||++.+| ..|++||+.+.. ..+ .+++.++++..++.+....
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~ 168 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA 168 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCC
Confidence 999999986 569999996421 122 2345567777777654433
No 229
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.7e-22 Score=179.98 Aligned_cols=120 Identities=24% Similarity=0.474 Sum_probs=99.6
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC--C---CCceEEECCeecCCC--Ch
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~--p---~~G~I~~~g~~i~~~--~~ 303 (367)
+.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 35999999999963 349999999999999999999999999999999999986 4 689999999998654 34
Q ss_pred hhhhhhceEeecCccccc-cchhhhcCCC----CCCC----HHHHHHHHHHcCccHHH
Q 017723 304 KDLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~-~Ti~eNi~~~----~~~~----~e~i~~al~~a~l~~~i 352 (367)
..+|+.++||+|++.+|+ .|++||+.+. ...+ ++++.++++..++.+.+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 138 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV 138 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh
Confidence 567889999999999998 5999999742 1111 34577888888886644
No 230
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=2e-22 Score=169.93 Aligned_cols=128 Identities=27% Similarity=0.417 Sum_probs=103.2
Q ss_pred eEEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC-Chhhhhh
Q 017723 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~-~~~~~r~ 308 (367)
-++++|+++.|+... ..+|+||||+|.+||+++|||+||||||||+++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999996543 2499999999999999999999999999999999999999999999999776654 3447888
Q ss_pred hceEeecCccc---cccchhhhcC----CC-CCCCHHHHHHHHHHcCccH-HHhhCcccc
Q 017723 309 KLSIIPQEPTL---FRGSVRTNLD----PL-GMYSDNEIWEAMEKCQLKA-TISRLPMLL 359 (367)
Q Consensus 309 ~i~~V~Q~~~l---f~~Ti~eNi~----~~-~~~~~e~i~~al~~a~l~~-~i~~lp~gl 359 (367)
.+-+|+|||+- -.-|+++-|. .. -+...++++++++.+++.+ +..+.|+.|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eL 142 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHEL 142 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhc
Confidence 99999999983 2336666553 21 1234567999999999987 456777643
No 231
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=183.17 Aligned_cols=120 Identities=27% Similarity=0.463 Sum_probs=100.7
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCCC--Ch
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~~--~~ 303 (367)
..|+++|++++|++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+. +.
T Consensus 44 ~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 35999999999964 349999999999999999999999999999999999986 6899999999998653 35
Q ss_pred hhhhhhceEeecCccccccchhhhcCCCCC--------------------CCHHHHHHHHHHcCccHHH
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--------------------YSDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~--------------------~~~e~i~~al~~a~l~~~i 352 (367)
..+|+.++||+|++.+|+.|++||+.+... ..++++.++++.+++.+.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 577889999999999999999999974310 1134677888888875433
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.5e-23 Score=181.80 Aligned_cols=117 Identities=22% Similarity=0.346 Sum_probs=97.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCCCC--hhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSMG--LKD 305 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~~~--~~~ 305 (367)
=+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999963 349999999999999999999999999999999999986 47999999999887653 235
Q ss_pred hhhhceEeecCccccccchhhhcCCCC---C------CCHHHHHHHHHHcCccHH
Q 017723 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---M------YSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~------~~~e~i~~al~~a~l~~~ 351 (367)
+|+.++||+|++.+|++|++||+.+.. . ..++++.++++..++.+.
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE 138 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch
Confidence 788999999999999999999996431 1 123457788999988653
No 233
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.88 E-value=1.4e-22 Score=179.65 Aligned_cols=116 Identities=25% Similarity=0.325 Sum_probs=96.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC--CCCCCceEEECCeecCCCChhhh-hhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~~ 309 (367)
|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 3499999999999999999999999999999999999 47999999999999988877654 445
Q ss_pred ceEeecCcccccc-chhhhcCCC----CC------CC----HHHHHHHHHHcCccH
Q 017723 310 LSIIPQEPTLFRG-SVRTNLDPL----GM------YS----DNEIWEAMEKCQLKA 350 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi~~~----~~------~~----~e~i~~al~~a~l~~ 350 (367)
++||+|++.+|++ |++||+.+. .. .+ ++++.++++..++.+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE 134 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch
Confidence 9999999999886 799998531 00 11 245777888888863
No 234
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.7e-22 Score=179.62 Aligned_cols=118 Identities=22% Similarity=0.347 Sum_probs=98.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCCC-hhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG-LKD 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~~-~~~ 305 (367)
.++++||+++|+. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 3499999999999999999999999999999999999986 6999999999987763 456
Q ss_pred hhhhceEeecCccccccchhhhcCCCC----CCCHHH----HHHHHHHcCccHH
Q 017723 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSDNE----IWEAMEKCQLKAT 351 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~~Ti~eNi~~~~----~~~~e~----i~~al~~a~l~~~ 351 (367)
+|++++|++|++.+|+.|++||+.+.. ..++++ +.++++..++.+.
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 152 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch
Confidence 788999999999999999999997531 124333 3456677777643
No 235
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=180.54 Aligned_cols=119 Identities=25% Similarity=0.412 Sum_probs=98.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC---CCC--CCceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL---VEP--ENGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~---~~p--~~G~I~~~g~~i~~~--~~~ 304 (367)
.|+++|+++.|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+ ++| ++|+|.+||+++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 3499999999999999999999999999999999997 454 589999999998764 345
Q ss_pred hhhhhceEeecCccccccchhhhcCCCC---C-----CCHHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-----YSDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~-----~~~e~i~~al~~a~l~~~i 352 (367)
.+|++++||+|++.+|+.|++||+.++. . ..+++++++++.+++.+.+
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 136 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch
Confidence 7788999999999999999999996421 1 1234677888888886544
No 236
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.88 E-value=2.3e-22 Score=175.83 Aligned_cols=119 Identities=24% Similarity=0.383 Sum_probs=100.6
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
++++||+++|+. +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999963 34999999999999999999999999999999999999999999999998875422 357999
Q ss_pred eecCccccc-cchhhhcCCC---CCCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTLFR-GSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~---~~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.+|. .|++||+.+. ...+++++.++++..++.+..+.-|.
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 123 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAK 123 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHh
Confidence 999999886 5999999642 12356788999999999887665443
No 237
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.7e-22 Score=172.90 Aligned_cols=118 Identities=18% Similarity=0.304 Sum_probs=97.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 689999999953 3355 599999999999999999999999999999999999999999999886643 356999
Q ss_pred eecCccc-cccchhhhcCCCC--CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 313 IPQEPTL-FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 313 V~Q~~~l-f~~Ti~eNi~~~~--~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++|++.+ |+.|++||+.+.. ...+++++++++..++.+.....+.
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 122 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCY 122 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChh
Confidence 9998764 7789999997532 1245678889999999877665443
No 238
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=179.90 Aligned_cols=117 Identities=24% Similarity=0.428 Sum_probs=97.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~--~~~~ 304 (367)
.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 2499999999999999999999999999999999999975 69999999998853 4456
Q ss_pred hhhhhceEeecCccccc-cchhhhcCCC----CCC----CHHHHHHHHHHcCccH
Q 017723 305 DLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMY----SDNEIWEAMEKCQLKA 350 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~-~Ti~eNi~~~----~~~----~~e~i~~al~~a~l~~ 350 (367)
.+|+.++|++|++.+|+ .|++||+.+. ... .++++.++++..++.+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 136 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN 136 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch
Confidence 78889999999999997 5999999642 111 1345677888888754
No 239
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=180.10 Aligned_cols=121 Identities=26% Similarity=0.442 Sum_probs=101.0
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-----CceEEECCeecCC--CCh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-----~G~I~~~g~~i~~--~~~ 303 (367)
+.|+++||+++|+. +.+|+|+||++++||.++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 36999999999953 24999999999999999999999999999999999999985 8999999998753 344
Q ss_pred hhhhhhceEeecCccccccchhhhcCCC----CCCC----HHHHHHHHHHcCccHHHh
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~----~~~~----~e~i~~al~~a~l~~~i~ 353 (367)
..+|+.++|++|++.+|+.|++||+.+. ...+ ++++.++++.+++.+++.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 141 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh
Confidence 5778899999999999999999999642 1111 345778888888866543
No 240
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=2.2e-22 Score=181.75 Aligned_cols=118 Identities=32% Similarity=0.589 Sum_probs=103.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.++++|++.+|+. ...+|+|+||++++|+.+|++||||||||||+++|+|+..|++|+|.++|.+..+- ...+|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4789999999963 23499999999999999999999999999999999999999999999999988776 788999999
Q ss_pred EeecCcccccc-chhhhcCCC----CC---CCHHHHHHHHHHcCccHH
Q 017723 312 IIPQEPTLFRG-SVRTNLDPL----GM---YSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~----~~---~~~e~i~~al~~a~l~~~ 351 (367)
||||+|.+++. |++||+.+. .. ..++++.++++..+|.+.
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~ 129 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK 129 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh
Confidence 99999997765 999999642 11 235689999999999973
No 241
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.1e-22 Score=185.86 Aligned_cols=122 Identities=25% Similarity=0.372 Sum_probs=103.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC----hhhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRT 308 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~ 308 (367)
|++ |++++|+. . .+ |+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ....++
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 566 89999953 2 33 899999999999999999999999999999999999999999999986532 345678
Q ss_pred hceEeecCccccc-cchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 309 KLSIIPQEPTLFR-GSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 309 ~i~~V~Q~~~lf~-~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+++||+|++.+|+ .|++||+.++ ....++++.++++..++.++.+..|..|
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 129 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSL 129 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccC
Confidence 9999999999996 5999999865 2345678999999999998888777544
No 242
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.88 E-value=3e-22 Score=179.60 Aligned_cols=125 Identities=26% Similarity=0.406 Sum_probs=99.8
Q ss_pred eEEEEeeEEEeCCC-------CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh
Q 017723 232 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~-------~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~ 304 (367)
-|+++||+++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 23599999999999999999999999999999999999999999999999998765555
Q ss_pred hhhhhceEeecCcc--ccc-cchhhhcCCC----CC----CCHHHHHHHHHHcCcc-HHHhhCc
Q 017723 305 DLRTKLSIIPQEPT--LFR-GSVRTNLDPL----GM----YSDNEIWEAMEKCQLK-ATISRLP 356 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~--lf~-~Ti~eNi~~~----~~----~~~e~i~~al~~a~l~-~~i~~lp 356 (367)
..++.++||+|++. +++ -|+.+|+.+. .. ..++++.++++.+++. +.....|
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP 147 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc
Confidence 66678999999985 443 3788887421 11 1235688899999995 4444333
No 243
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5e-22 Score=178.69 Aligned_cols=121 Identities=21% Similarity=0.348 Sum_probs=100.7
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCC--CCh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~--~~~ 303 (367)
.-|+++|++++|+. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.+ .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999964 3499999999999999999999999999999999999864 58999999999864 344
Q ss_pred hhhhhhceEeecCccccccchhhhcCCCCC------CCHHHHHHHHHHcCccHHHh
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM------YSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~------~~~e~i~~al~~a~l~~~i~ 353 (367)
..+|+.++|++|++.+|+.|+.||+.+... ..++++.++++.+++.+.+.
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 152 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK 152 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH
Confidence 567889999999999999999999975321 12445677888888865543
No 244
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.8e-22 Score=179.46 Aligned_cols=122 Identities=23% Similarity=0.270 Sum_probs=98.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++||+++|+++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 59999999999633 349999999999999999999999999999999999999999999999998742 12234699
Q ss_pred EeecCccc---cccchhhhcCCCC-----------CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 312 IIPQEPTL---FRGSVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 312 ~V~Q~~~l---f~~Ti~eNi~~~~-----------~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
|++|++.+ +..++++|+.++. ...++++.++++..++.+.....|.
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 141 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG 141 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc
Confidence 99999875 4568899985321 0123467788999999877665443
No 245
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5e-22 Score=182.35 Aligned_cols=126 Identities=28% Similarity=0.396 Sum_probs=102.1
Q ss_pred eEEEEeeEEEeCCC--------CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh
Q 017723 232 RIELEDLKVRYRPN--------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL 303 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~--------~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~ 303 (367)
-|+++|+++.|+.. ...+|+|+||+|++||+++|||+||||||||+++|+|+++|++|+|.++|.++.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2359999999999999999999999999999999999999999999999999988875
Q ss_pred h---hhhhhceEeecCcc--ccc-cchhhhcCC----CCC----CCHHHHHHHHHHcCccH-HHhhCcc
Q 017723 304 K---DLRTKLSIIPQEPT--LFR-GSVRTNLDP----LGM----YSDNEIWEAMEKCQLKA-TISRLPM 357 (367)
Q Consensus 304 ~---~~r~~i~~V~Q~~~--lf~-~Ti~eNi~~----~~~----~~~e~i~~al~~a~l~~-~i~~lp~ 357 (367)
+ .+|++++||+|+|. |++ -|+.+|+.. ... ...+++.++++.+++.+ ..+..|.
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence 4 56788999999994 555 488888741 111 12356888999999964 4455554
No 246
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.5e-22 Score=181.70 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=97.5
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-----CCCceEEECCeecCCC--Ch
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GL 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-----p~~G~I~~~g~~i~~~--~~ 303 (367)
..|+++||+++|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35999999999963 249999999999999999999999999999999999864 4999999999988653 33
Q ss_pred hhhhhhceEeecCccccccchhhhcCCCC---CC-C----HHHHHHHHHHcCccH
Q 017723 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKA 350 (367)
Q Consensus 304 ~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~---~~-~----~e~i~~al~~a~l~~ 350 (367)
..+|++++||+|++.+|+.|++||+.+.. .. + ++++.++++..++.+
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 170 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD 170 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc
Confidence 46788999999999999999999997531 11 1 245667788777643
No 247
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.87 E-value=2.4e-22 Score=167.14 Aligned_cols=86 Identities=34% Similarity=0.469 Sum_probs=79.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++. +.+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 45999999999999999999999999999999999999999999999873 58999
Q ss_pred eecCccccccchhhhcCC
Q 017723 313 IPQEPTLFRGSVRTNLDP 330 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi~~ 330 (367)
++|++.+++.|++||+.+
T Consensus 69 ~~q~~~~~~~tv~~nl~~ 86 (166)
T cd03223 69 LPQRPYLPLGTLREQLIY 86 (166)
T ss_pred ECCCCccccccHHHHhhc
Confidence 999999999999999964
No 248
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.87 E-value=5.5e-22 Score=175.92 Aligned_cols=114 Identities=25% Similarity=0.370 Sum_probs=98.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++||+++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999963 3499999999999999999999999999999999999999999999987 24799
Q ss_pred EeecCccccc---cchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 312 IIPQEPTLFR---GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 312 ~V~Q~~~lf~---~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
|++|++.++. .|+++|+......+++++.++++..++.+.+...|..
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 120 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQK 120 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhh
Confidence 9999998865 4899998654334677899999999998887765543
No 249
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=178.31 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=102.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCC--Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 304 (367)
.+.+++.+++|.+ ..+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999953 3499999999999999999999999999999999999987 799999999998653 345
Q ss_pred hhhhhceEeecCccccccchhhhcCCCCC------CCHHHHHHHHHHcCccHHHh
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM------YSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~------~~~e~i~~al~~a~l~~~i~ 353 (367)
.+|+.++|++|++.+|+.|++||+.++.. ...+++.++++.+++.+.+.
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~ 140 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK 140 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh
Confidence 67889999999999999999999975321 12357889999999876654
No 250
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.87 E-value=3.7e-22 Score=170.39 Aligned_cols=96 Identities=26% Similarity=0.432 Sum_probs=86.5
Q ss_pred eEEEEeeEEEeCCC----CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC--CCCCceEEECCeecCCCChhh
Q 017723 232 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKD 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~----~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~--~p~~G~I~~~g~~i~~~~~~~ 305 (367)
.|+++||+|+|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 245999999999999999999999999999999999999 9999999999998864 36
Q ss_pred hhhhceEeecCcccccc-chhhhcCC
Q 017723 306 LRTKLSIIPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~~-Ti~eNi~~ 330 (367)
+++.++|++|++.+|.. |++||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~ 105 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMF 105 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHH
Confidence 78899999999999875 99999853
No 251
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.9e-22 Score=177.74 Aligned_cols=97 Identities=29% Similarity=0.507 Sum_probs=86.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-----CceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-----~G~I~~~g~~i~~--~~~~ 304 (367)
-++++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+ .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999963 34999999999999999999999999999999999999875 8999999999875 3345
Q ss_pred hhhhhceEeecCcccccc-chhhhcCC
Q 017723 305 DLRTKLSIIPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~-Ti~eNi~~ 330 (367)
.+|+.++|++|++.+|+. |++||+.+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~ 108 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVA 108 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHH
Confidence 778899999999999985 99999964
No 252
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.2e-22 Score=178.21 Aligned_cols=119 Identities=24% Similarity=0.386 Sum_probs=97.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC--C---CCceEEECCeecCC--CChh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICS--MGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~--p---~~G~I~~~g~~i~~--~~~~ 304 (367)
-|+++||+++|+. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999963 349999999999999999999999999999999999975 5 58999999998864 3345
Q ss_pred hhhhhceEeecCccccccchhhhcCCC----C-CC---CHHHHHHHHHHcCccHHH
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL----G-MY---SDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~----~-~~---~~e~i~~al~~a~l~~~i 352 (367)
.+++.++|++|++.+|+.|++||+.+. . .. .++++.++++.+++.+.+
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i 138 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV 138 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch
Confidence 678899999999999999999999642 1 11 134566777887765433
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.8e-22 Score=168.98 Aligned_cols=95 Identities=25% Similarity=0.338 Sum_probs=84.6
Q ss_pred eEEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC--CCCCceEEECCeecCCCChhhhh
Q 017723 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDLR 307 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~--~p~~G~I~~~g~~i~~~~~~~~r 307 (367)
.|+++|++|.|++. .+++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 245999999999999999999999999999999999986 489999999999875 5678
Q ss_pred hhceEeecCcccccc-chhhhcCC
Q 017723 308 TKLSIIPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~~-Ti~eNi~~ 330 (367)
++++|++|++.+|+. |++||+.+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~ 102 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRF 102 (192)
T ss_pred hceEEecccCccccCCcHHHHHHH
Confidence 899999999998875 99999853
No 254
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.87 E-value=1.1e-21 Score=171.75 Aligned_cols=120 Identities=23% Similarity=0.397 Sum_probs=96.0
Q ss_pred EEEEeeEEEeCC----C-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEEC--Ce--ecCCCCh
Q 017723 233 IELEDLKVRYRP----N-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID--GL--DICSMGL 303 (367)
Q Consensus 233 I~~~nvsf~Y~~----~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~--g~--~i~~~~~ 303 (367)
|+++|++++|+. . ...+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 689999999953 1 2359999999999999999999999999999999999999999999998 42 6666655
Q ss_pred hh---h-hhhceEeecCcccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCccHHH
Q 017723 304 KD---L-RTKLSIIPQEPTLFRG-SVRTNLDPL---GMY----SDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 304 ~~---~-r~~i~~V~Q~~~lf~~-Ti~eNi~~~---~~~----~~e~i~~al~~a~l~~~i 352 (367)
.. + ++.++|++|++.+|+. |++||+.+. ... .++++.++++..++.+..
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 142 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL 142 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh
Confidence 43 2 4579999999998764 999998531 111 235677788888886643
No 255
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=6.9e-22 Score=157.09 Aligned_cols=128 Identities=24% Similarity=0.329 Sum_probs=106.8
Q ss_pred eEEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh----
Q 017723 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---- 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---- 305 (367)
-|++++++..-+.. +-.+|++++|.+++||.+||||+||||||||+-++.|+-+|++|+|.+.|+++.+++.+.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 37788887776443 234999999999999999999999999999999999999999999999999999998764
Q ss_pred hhhhceEeecCcccc-ccchhhhcCCC----CC-C--CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 306 LRTKLSIIPQEPTLF-RGSVRTNLDPL----GM-Y--SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf-~~Ti~eNi~~~----~~-~--~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
..+++++|+|.++|. +.|-.||+... .+ . +.+...+.++.++|.+-+...|..|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qL 147 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQL 147 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcccc
Confidence 357899999999975 66999998632 11 2 2345788899999999998888755
No 256
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=5.3e-22 Score=184.36 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=97.0
Q ss_pred eEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe----ecCCCChhhhh----hh
Q 017723 238 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL----DICSMGLKDLR----TK 309 (367)
Q Consensus 238 vsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~----~i~~~~~~~~r----~~ 309 (367)
+..+|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++...+.+.+| ++
T Consensus 30 ~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 30 ILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 3445532 34899999999999999999999999999999999999999999999996 66666655443 57
Q ss_pred ceEeecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 310 LSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 310 i~~V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++||+|++.+|+ .|++||+.++. ..+ .+++.++++.+++.++....|..
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~ 164 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGE 164 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 999999999997 79999997531 112 34678899999998887776653
No 257
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=173.79 Aligned_cols=118 Identities=28% Similarity=0.432 Sum_probs=97.8
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC------eecCCCChh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG------LDICSMGLK 304 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g------~~i~~~~~~ 304 (367)
+.|.++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++.+++..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999953 3499999999999999999999999999999999999999997666655 677667777
Q ss_pred hhhhhceEeecCcccccc-chhhhcCCC----CCCCH----HHHHHHHHHcCccH
Q 017723 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPL----GMYSD----NEIWEAMEKCQLKA 350 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~-Ti~eNi~~~----~~~~~----e~i~~al~~a~l~~ 350 (367)
.+|+.++|++|++.+|++ |++||+.+. ...++ +++.++++..++++
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 889999999999999976 999999742 11122 34577888888864
No 258
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.86 E-value=2e-21 Score=189.84 Aligned_cols=123 Identities=24% Similarity=0.338 Sum_probs=104.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhh-hhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 310 (367)
-|+++|++++|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999963 3499999999999999999999999999999999999999999999999999887766655 469
Q ss_pred eEeecCcccccc-chhhhcCCCCC---CCHHHHHHHHHHcCccHHHhhCc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLGM---YSDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp 356 (367)
+||+|++.+|+. |++||+.+... ..++++.++++..++.+.....|
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 138 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSA 138 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCCh
Confidence 999999998875 99999976421 12467888899998876655444
No 259
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.86 E-value=1.9e-21 Score=174.47 Aligned_cols=123 Identities=22% Similarity=0.377 Sum_probs=98.5
Q ss_pred eEEEEeeEEEeCC-------CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-
Q 017723 232 RIELEDLKVRYRP-------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL- 303 (367)
Q Consensus 232 ~I~~~nvsf~Y~~-------~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~- 303 (367)
-|+++||+|.|+. ..+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 3889999999963 13459999999999999999999999999999999999999999999999999988765
Q ss_pred --hhhhhhceEeecCcc--cc-ccchhhhcCCC----CCC----CHHHHHHHHHHcCcc-HHHhh
Q 017723 304 --KDLRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMY----SDNEIWEAMEKCQLK-ATISR 354 (367)
Q Consensus 304 --~~~r~~i~~V~Q~~~--lf-~~Ti~eNi~~~----~~~----~~e~i~~al~~a~l~-~~i~~ 354 (367)
..+|+.++|++|++. ++ +.|++||+.+. ... ..+++.++++..++. +....
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhC
Confidence 356889999999983 43 47899997421 111 223577788887775 34443
No 260
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=1.1e-21 Score=182.44 Aligned_cols=119 Identities=28% Similarity=0.339 Sum_probs=98.9
Q ss_pred eeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC----hhhhhhhceE
Q 017723 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSI 312 (367)
Q Consensus 237 nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~~i~~ 312 (367)
|++++|++ . .+ |+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|++++|
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 78999953 2 35 999999999999999999999999999999999999999999999986543 2356788999
Q ss_pred eecCcccccc-chhhhcCCCC-CC----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLG-MY----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~-~~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+|++.+|+. |++||+.++. .. .++++.++++..++.+.....|..|
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 132 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRL 132 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 9999999975 9999997542 11 1345888999999988877766543
No 261
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.6e-22 Score=170.65 Aligned_cols=120 Identities=24% Similarity=0.382 Sum_probs=102.6
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 311 (367)
+++++++-+|..- .+++|+||++++||.++|+||+||||||++|++.|+|+|++|+|.++|.|+..+++..+ |.-|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 5789999999533 39999999999999999999999999999999999999999999999999999997765 55599
Q ss_pred EeecCcccccc-chhhhcCCCC-------------------CCCHHHHHHHHHHcCccHHHhh
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG-------------------MYSDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~-------------------~~~~e~i~~al~~a~l~~~i~~ 354 (367)
--+|.+.+|++ |+.||+..+. +...|+..+.|+.++|.+....
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~ 145 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR 145 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc
Confidence 99999999976 9999985431 1123567788899999887654
No 262
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.86 E-value=7e-22 Score=180.27 Aligned_cols=110 Identities=26% Similarity=0.429 Sum_probs=93.0
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc-chh
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVR 325 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-Ti~ 325 (367)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|++|++.+|+. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 349999999999999999999999999999999999999999999999999876 345678899999999999876 999
Q ss_pred hhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCcc
Q 017723 326 TNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 326 eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
||+.+.. .. .++++.++++..++.+.....+.
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 123 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG 123 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchh
Confidence 9996421 11 23468889999998776655443
No 263
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.86 E-value=1.3e-21 Score=165.51 Aligned_cols=93 Identities=27% Similarity=0.505 Sum_probs=84.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-hhhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 310 (367)
-|+++|++++| +++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988864 4567889
Q ss_pred eEeecCc----cccccchhhhcCC
Q 017723 311 SIIPQEP----TLFRGSVRTNLDP 330 (367)
Q Consensus 311 ~~V~Q~~----~lf~~Ti~eNi~~ 330 (367)
+|++|++ .+++.|++||+.+
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHH
Confidence 9999995 3445799999854
No 264
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.2e-21 Score=164.11 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=89.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 310 (367)
-++++|++-.|.+ ..+|+++||++++||.++++|++|+||||+++.|+|+.+|.+|+|.++|.|+...+++.. |.-+
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999965 349999999999999999999999999999999999999999999999999999987755 6669
Q ss_pred eEeecCcccccc-chhhhcCCC
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPL 331 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~ 331 (367)
+||||.-.+|+. |++||+.++
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g 102 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLG 102 (237)
T ss_pred EeCcccccchhhCcHHHHHhhh
Confidence 999999999976 999999765
No 265
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.86 E-value=2.2e-21 Score=172.84 Aligned_cols=114 Identities=25% Similarity=0.410 Sum_probs=94.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC----CCceEEECCeecCCCChhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLR 307 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~r 307 (367)
.|+++|++++| + .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~--~~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP--CALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--ccccc
Confidence 58999999999 2 3499999999999999999999999999999999999999 99999999998863 22335
Q ss_pred hhceEeecCcc-ccc--cchhhhcCC-----CCCCCHHHHHHHHHHcCccH
Q 017723 308 TKLSIIPQEPT-LFR--GSVRTNLDP-----LGMYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 308 ~~i~~V~Q~~~-lf~--~Ti~eNi~~-----~~~~~~e~i~~al~~a~l~~ 350 (367)
+.++||+|++. .|. .|+.+|+.. +....+++++++++.+++.+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 129 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN 129 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC
Confidence 67999999985 344 477777632 22234578899999999876
No 266
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.4e-21 Score=169.80 Aligned_cols=118 Identities=25% Similarity=0.372 Sum_probs=96.4
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC----Chhhhhhh
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTK 309 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~----~~~~~r~~ 309 (367)
++ |++++|++. .+ |+||++++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++.+. +...+|+.
T Consensus 3 ~~-~l~~~~~~~---~~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF---TL-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe---ee-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 45 899999642 23 99999999 99999999999999999999999999999999999988643 23456889
Q ss_pred ceEeecCccccc-cchhhhcCCCCC-----CCHHHHHHHHHHcCccHHHhhCcc
Q 017723 310 LSIIPQEPTLFR-GSVRTNLDPLGM-----YSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 310 i~~V~Q~~~lf~-~Ti~eNi~~~~~-----~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++||+|++.+|+ .|++||+.+... ..++++.++++..++.+.+...|.
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 130 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPA 130 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcc
Confidence 999999999986 599999975321 124567889999988776665443
No 267
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.9e-21 Score=177.43 Aligned_cols=118 Identities=20% Similarity=0.351 Sum_probs=95.4
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC----CCceEEECCeecCCCChhhh
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDL 306 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~ 306 (367)
|+++|+++.|+... ..+|+|+||+|++||.++|||+||||||||+++|+|+++| ++|+|.++|.++.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 79999999996432 3499999999999999999999999999999999999984 89999999999999887765
Q ss_pred hh----hceEeecCcc--ccc-cchhhhc----CCCCC----CCHHHHHHHHHHcCccH
Q 017723 307 RT----KLSIIPQEPT--LFR-GSVRTNL----DPLGM----YSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 307 r~----~i~~V~Q~~~--lf~-~Ti~eNi----~~~~~----~~~e~i~~al~~a~l~~ 350 (367)
++ .++||+|+|. +++ -|+.+|+ ..... ...+++.++++.+++.+
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~ 142 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD 142 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 54 6999999995 443 3555544 22111 12457889999999974
No 268
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.86 E-value=6.5e-22 Score=159.56 Aligned_cols=99 Identities=42% Similarity=0.730 Sum_probs=91.7
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccc-hhhhc
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS-VRTNL 328 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~T-i~eNi 328 (367)
|+|+|++|++|++++|+|+||||||||+++|+|.++|++|+|.+||.++.+.+....|+.++|++|++.+|++. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999886 9999
Q ss_pred CCCCCCCHHHHHHHHHHcCccHHHhh
Q 017723 329 DPLGMYSDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 329 ~~~~~~~~e~i~~al~~a~l~~~i~~ 354 (367)
..+++++++++..++.++...
T Consensus 80 -----~~~~~~~~~l~~l~~~~~~~~ 100 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLEDLLDR 100 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGGGTGS
T ss_pred -----ccccccccccccccccccccc
Confidence 357789999999988775443
No 269
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=189.44 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=100.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC--CCceEEECCeecCCCChhh-hhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p--~~G~I~~~g~~i~~~~~~~-~r~ 308 (367)
-|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+... +|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999953 3499999999999999999999999999999999999996 8999999999998776554 467
Q ss_pred hceEeecCcccccc-chhhhcCCCCC------CC----HHHHHHHHHHcCccHHHhh
Q 017723 309 KLSIIPQEPTLFRG-SVRTNLDPLGM------YS----DNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~-Ti~eNi~~~~~------~~----~e~i~~al~~a~l~~~i~~ 354 (367)
+++||+|++.+|+. |++||+.+... .+ .+++.++++..++.+....
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT 139 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCccc
Confidence 89999999998865 99999975321 12 2457778888887654443
No 270
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.4e-21 Score=189.14 Aligned_cols=120 Identities=24% Similarity=0.321 Sum_probs=100.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-hhhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 310 (367)
-|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999963 349999999999999999999999999999999999999999999999999876543 4567889
Q ss_pred eEeecCcccccc-chhhhcCCCC-----C-CC----HHHHHHHHHHcCccHHHh
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG-----M-YS----DNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~-----~-~~----~e~i~~al~~a~l~~~i~ 353 (367)
+||+|++.+|+. |++||+.++. . .+ ++++.++++..++.+...
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 135 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD 135 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC
Confidence 999999998875 9999997531 1 11 246777888888764433
No 271
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=194.14 Aligned_cols=128 Identities=28% Similarity=0.404 Sum_probs=108.5
Q ss_pred eEEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh---
Q 017723 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL--- 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~--- 306 (367)
-|+++|++++|++. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999643 2459999999999999999999999999999999999999999999999999999887664
Q ss_pred -hhhceEeecCccccc-cchhhhcCCC----C-C--CCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 307 -RTKLSIIPQEPTLFR-GSVRTNLDPL----G-M--YSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 307 -r~~i~~V~Q~~~lf~-~Ti~eNi~~~----~-~--~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+.++|++|++.+|+ .|+.||+.+. . . ..++++.++++..++.+.++..|..|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~L 145 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQL 145 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccC
Confidence 578999999999997 5999999642 1 1 12346788899999988887776543
No 272
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=188.80 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=99.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh-hhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 310 (367)
-|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999953 34999999999999999999999999999999999999999999999999987665544 35689
Q ss_pred eEeecCcccccc-chhhhcCCCCC-------CC----HHHHHHHHHHcCccHHHh
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLGM-------YS----DNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~~-------~~----~e~i~~al~~a~l~~~i~ 353 (367)
+||+|++.+|+. |++||+.++.. .+ ++++.++++..++.+...
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 136 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD 136 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999998865 99999975311 11 235677888888765543
No 273
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2e-21 Score=190.12 Aligned_cols=121 Identities=23% Similarity=0.301 Sum_probs=100.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh-hhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 310 (367)
-|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999953 34999999999999999999999999999999999999999999999999998877654 34679
Q ss_pred eEeecCcccccc-chhhhcCCCC-------C---CC----HHHHHHHHHHcCccHHHhh
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG-------M---YS----DNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~-------~---~~----~e~i~~al~~a~l~~~i~~ 354 (367)
+||+|++.+|+. |++||+.++. . .+ ++++.++++..++.+....
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 141 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE 141 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCccc
Confidence 999999998875 9999996531 1 01 2456778888888654443
No 274
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=3e-21 Score=172.52 Aligned_cols=123 Identities=27% Similarity=0.437 Sum_probs=96.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCee-----cCCCChhh-
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKD- 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~-----i~~~~~~~- 305 (367)
-|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999964 349999999999999999999999999999999999999999999999998 77776554
Q ss_pred ---hhhhceEeecCcc--cc-ccchhhhcCC----CCCC----CHHHHHHHHHHcCccH-HHhhCc
Q 017723 306 ---LRTKLSIIPQEPT--LF-RGSVRTNLDP----LGMY----SDNEIWEAMEKCQLKA-TISRLP 356 (367)
Q Consensus 306 ---~r~~i~~V~Q~~~--lf-~~Ti~eNi~~----~~~~----~~e~i~~al~~a~l~~-~i~~lp 356 (367)
+++.++||+|++. ++ ..|+.||+.. .... .++++.++++..++.+ .....|
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP 149 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC
Confidence 3567999999984 33 3478888742 1111 1345666777777753 444433
No 275
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.4e-21 Score=159.38 Aligned_cols=120 Identities=23% Similarity=0.415 Sum_probs=105.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+.+|+|++-.. +.+|+++||++++||.+||+||+|+|||||++.|.|.+.|++|++.+||+++.+++..++-++-++
T Consensus 2 i~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 788999988743 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCccc-cccchhhhcCCCC-------CCCHHH--HHHHHHHcCccHHHhh
Q 017723 313 IPQEPTL-FRGSVRTNLDPLG-------MYSDNE--IWEAMEKCQLKATISR 354 (367)
Q Consensus 313 V~Q~~~l-f~~Ti~eNi~~~~-------~~~~e~--i~~al~~a~l~~~i~~ 354 (367)
.||+..| |+-|++|-+.++. +..+++ ..+++..+++..+-.+
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R 131 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR 131 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc
Confidence 9999998 9999999987642 223444 7889999988877543
No 276
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.85 E-value=3.9e-21 Score=176.73 Aligned_cols=119 Identities=24% Similarity=0.398 Sum_probs=96.4
Q ss_pred eEEEEeeEEEeCC--CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCChhhh
Q 017723 232 RIELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDL 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~--~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~ 306 (367)
-++++|+++.|+. +...+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2235999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----hhceEeecCc--cccc-cchhhhcC----CCCCCC----HHHHHHHHHHcCccH
Q 017723 307 R----TKLSIIPQEP--TLFR-GSVRTNLD----PLGMYS----DNEIWEAMEKCQLKA 350 (367)
Q Consensus 307 r----~~i~~V~Q~~--~lf~-~Ti~eNi~----~~~~~~----~e~i~~al~~a~l~~ 350 (367)
+ ++|+||+|+| .+++ .|+.+|+. .....+ .+++.++++.+++.+
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~ 150 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC
Confidence 4 4799999998 4544 47777763 111222 245677888888753
No 277
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.6e-21 Score=177.33 Aligned_cols=125 Identities=22% Similarity=0.414 Sum_probs=100.0
Q ss_pred EEEEeeEEEeCC--CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC----CCCceEEECCeecCCCChhhh
Q 017723 233 IELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKDL 306 (367)
Q Consensus 233 I~~~nvsf~Y~~--~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~----p~~G~I~~~g~~i~~~~~~~~ 306 (367)
|+++|++++|+. +...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999953 22359999999999999999999999999999999999986 589999999999998887665
Q ss_pred h----hhceEeecCccc--c-ccchhhhcCCC-------C----C--CCHHHHHHHHHHcCccH---HHhhCcc
Q 017723 307 R----TKLSIIPQEPTL--F-RGSVRTNLDPL-------G----M--YSDNEIWEAMEKCQLKA---TISRLPM 357 (367)
Q Consensus 307 r----~~i~~V~Q~~~l--f-~~Ti~eNi~~~-------~----~--~~~e~i~~al~~a~l~~---~i~~lp~ 357 (367)
+ +.++||+|+|.. + ..|+.+|+... . + ..++++.++++.+++.+ .....|.
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~ 157 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPY 157 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCch
Confidence 3 479999999973 3 35888887421 0 0 01357889999999974 3445554
No 278
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.85 E-value=5.7e-21 Score=170.25 Aligned_cols=123 Identities=22% Similarity=0.252 Sum_probs=99.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC--CCCCCceEEECCeecCCCChhhhhh-
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDLRT- 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~r~- 308 (367)
-|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999963 3499999999999999999999999999999999998 6899999999999998887766554
Q ss_pred hceEeecCcccccc-chhhhcCCCC----------CCC----HHHHHHHHHHcCccH-HHhhCc
Q 017723 309 KLSIIPQEPTLFRG-SVRTNLDPLG----------MYS----DNEIWEAMEKCQLKA-TISRLP 356 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~-Ti~eNi~~~~----------~~~----~e~i~~al~~a~l~~-~i~~lp 356 (367)
.+++++|++.+|++ |+.+|+.+.. +.+ .+++.++++.+++.+ .....|
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 148 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV 148 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc
Confidence 48999999999886 7888875321 011 245677888888863 444433
No 279
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.85 E-value=4.3e-21 Score=164.72 Aligned_cols=94 Identities=31% Similarity=0.443 Sum_probs=83.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC--CCCCCceEEECCeecCCCChhhh-hhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~~ 309 (367)
++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 3499999999999999999999999999999999999 58999999999999998876654 456
Q ss_pred ceEeecCcccccc-chhhhc
Q 017723 310 LSIIPQEPTLFRG-SVRTNL 328 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi 328 (367)
++|++|++.+|++ |+++|+
T Consensus 79 i~~v~q~~~~~~~~~~~~~l 98 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL 98 (200)
T ss_pred EEEeecChhhccCccHHHHH
Confidence 9999999999986 566655
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=5e-21 Score=169.86 Aligned_cols=118 Identities=22% Similarity=0.286 Sum_probs=98.0
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
+++||+++ . +|+|+||+|++|++++|+|+||||||||+++|+|++++ +|+|.+||.++.+.+...+++.++|+
T Consensus 2 ~~~~l~~~-----~-~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS-----T-RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh-----c-eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56778774 1 79999999999999999999999999999999999964 99999999999988888888899999
Q ss_pred ecCcc-ccccchhhhcCCCCC--CC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 314 PQEPT-LFRGSVRTNLDPLGM--YS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 314 ~Q~~~-lf~~Ti~eNi~~~~~--~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++. .+..|++||+.+... .+ .+++.++++..++.+.....+..
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQ 126 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCccc
Confidence 99985 557899999975421 11 34678889998887766655443
No 281
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.84 E-value=4.5e-21 Score=161.83 Aligned_cols=80 Identities=39% Similarity=0.720 Sum_probs=75.1
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
+++||+++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3499999999999999999999999999999999999999999999999999988888889999999
Q ss_pred ec
Q 017723 314 PQ 315 (367)
Q Consensus 314 ~Q 315 (367)
+|
T Consensus 79 ~q 80 (180)
T cd03214 79 PQ 80 (180)
T ss_pred HH
Confidence 99
No 282
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1.5e-22 Score=164.88 Aligned_cols=121 Identities=26% Similarity=0.470 Sum_probs=99.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 310 (367)
.+..+|+.-+|.. +.+++++||++++||.|++.||+|+||||.+..+.|+.+|++|+|.+||.|++.++.... |--|
T Consensus 4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4788899999943 459999999999999999999999999999999999999999999999999999998765 5559
Q ss_pred eEeecCcccccc-chhhhcCCCCCC---------CHHHHHHHHHHcCccHHHhh
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLGMY---------SDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~~~---------~~e~i~~al~~a~l~~~i~~ 354 (367)
+|.||||.+|.+ |++|||...-+. ..+++.+.++.-++.+.-.+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~ 135 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS 135 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcC
Confidence 999999999987 999999532111 12235566666666555443
No 283
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.84 E-value=1.4e-20 Score=167.88 Aligned_cols=121 Identities=21% Similarity=0.331 Sum_probs=95.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCee-----cCCCChhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKDL 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~-----i~~~~~~~~ 306 (367)
.|+++||+++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ +..++....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 248999999999999999999999999999999999999999999999987 766665543
Q ss_pred ----hhhceEeecCcc--c-cccchhhhcCC-----CC-C--CCHHHHHHHHHHcCcc-HHHhh
Q 017723 307 ----RTKLSIIPQEPT--L-FRGSVRTNLDP-----LG-M--YSDNEIWEAMEKCQLK-ATISR 354 (367)
Q Consensus 307 ----r~~i~~V~Q~~~--l-f~~Ti~eNi~~-----~~-~--~~~e~i~~al~~a~l~-~~i~~ 354 (367)
++.++|++|++. + +..|+.+|+.. .. . ..++++.++++..++. +....
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 144 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDD 144 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhc
Confidence 467999999985 2 34578888742 11 1 1245667777777775 34433
No 284
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=6.2e-21 Score=168.04 Aligned_cols=107 Identities=26% Similarity=0.376 Sum_probs=85.0
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEee-cCcccc-ccch
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLF-RGSV 324 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~-Q~~~lf-~~Ti 324 (367)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4599999999999999999999999999999999999999999999999987553 356788999997 667776 5699
Q ss_pred hhhcCCCC---CCCH----HHHHHHHHHcCccHHHhh
Q 017723 325 RTNLDPLG---MYSD----NEIWEAMEKCQLKATISR 354 (367)
Q Consensus 325 ~eNi~~~~---~~~~----e~i~~al~~a~l~~~i~~ 354 (367)
+||+.+.. ..+. +++.++++..++.+..+.
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT 149 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC
Confidence 99985421 1222 345566777777655443
No 285
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.4e-20 Score=176.49 Aligned_cols=99 Identities=27% Similarity=0.415 Sum_probs=89.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh-c
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK-L 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~-i 310 (367)
-++++|++-+|++- .+|+++||++++||..|++|++|+|||||+|.|.|.|+|++|+|.+||.+..-.++.+-++. |
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48899999999754 39999999999999999999999999999999999999999999999999998877766555 9
Q ss_pred eEeecCcccccc-chhhhcCCCC
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG 332 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~ 332 (367)
+.|+||..|++. ||.|||.++.
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgr 108 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGR 108 (500)
T ss_pred EEEeechhccCCccHHHHhhccc
Confidence 999999999865 9999996654
No 286
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=1.3e-20 Score=183.74 Aligned_cols=123 Identities=17% Similarity=0.110 Sum_probs=104.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|+. . .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+++
T Consensus 4 l~~~~l~~~~~~-~-~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSD-T-KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCC-e-eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 889999999963 2 39999999999999999999999999999999999999999999999988877777777888999
Q ss_pred eecCccc---------cccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 313 IPQEPTL---------FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 313 V~Q~~~l---------f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++|++.+ +..|++||+.... ..++++.++++..++.+.....|..
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~ 135 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITALLDRRFKY 135 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhhhhCCccc
Confidence 9998753 2458999986432 2356788999999998776665543
No 287
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=1.4e-20 Score=173.13 Aligned_cols=115 Identities=23% Similarity=0.380 Sum_probs=97.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh-hhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 310 (367)
.+++++++-+|| + -.+++||||++++||.-||.|++|+|||||++.|.|+|+|++|+|++||++++--++. ..|.-|
T Consensus 4 ~l~~~~itK~f~-~-~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFP-G-VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcC-C-EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 589999999997 3 3489999999999999999999999999999999999999999999999999866655 566679
Q ss_pred eEeecCcccccc-chhhhcCCCCCC----------CHHHHHHHHHHcCc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLGMY----------SDNEIWEAMEKCQL 348 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~~~----------~~e~i~~al~~a~l 348 (367)
|+|+|++.|++. |+.|||.++.+. ..+++.+.++..++
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl 130 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL 130 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCC
Confidence 999999999976 999999776432 23456666666554
No 288
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.8e-20 Score=186.81 Aligned_cols=128 Identities=25% Similarity=0.388 Sum_probs=103.6
Q ss_pred eEEEEeeEEEeCCC---------CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC
Q 017723 232 RIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~---------~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~ 302 (367)
-++++|+++.|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 49999999999621 135999999999999999999999999999999999999999999999999998776
Q ss_pred hh---hhhhhceEeecCcc--ccc-cchhhhcCCC----CCC----CHHHHHHHHHHcCcc-HHHhhCcccc
Q 017723 303 LK---DLRTKLSIIPQEPT--LFR-GSVRTNLDPL----GMY----SDNEIWEAMEKCQLK-ATISRLPMLL 359 (367)
Q Consensus 303 ~~---~~r~~i~~V~Q~~~--lf~-~Ti~eNi~~~----~~~----~~e~i~~al~~a~l~-~~i~~lp~gl 359 (367)
.. .+|++|+||+|+++ +++ .|+.||+... ... ..+++.++++.+++. +.....|..|
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~L 464 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF 464 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccC
Confidence 43 45778999999983 664 5999998531 111 125678899999995 5666655543
No 289
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.5e-20 Score=183.22 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=94.8
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-hhhhhhceEe
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKLSII 313 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i~~V 313 (367)
++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.++||
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4689999963 349999999999999999999999999999999999999999999999999876654 3457789999
Q ss_pred ecCccccc-cchhhhcCCCC----C--CC----HHHHHHHHHHcCccHHH
Q 017723 314 PQEPTLFR-GSVRTNLDPLG----M--YS----DNEIWEAMEKCQLKATI 352 (367)
Q Consensus 314 ~Q~~~lf~-~Ti~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i 352 (367)
+|++.+|. .|++||+.+.. . .+ .+++.++++..++.+..
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 128 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP 128 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCc
Confidence 99998765 59999997531 1 12 23566777777775443
No 290
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=2.3e-20 Score=182.35 Aligned_cols=116 Identities=27% Similarity=0.338 Sum_probs=96.6
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC--CCceEEECCeecCCCChhh-hhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p--~~G~I~~~g~~i~~~~~~~-~r~~ 309 (367)
|+++|++++|++ ..+|+|+||++++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+... +|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999953 3499999999999999999999999999999999999987 7999999999998877554 4567
Q ss_pred ceEeecCcccccc-chhhhcCCCCC-------CC----HHHHHHHHHHcCccH
Q 017723 310 LSIIPQEPTLFRG-SVRTNLDPLGM-------YS----DNEIWEAMEKCQLKA 350 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi~~~~~-------~~----~e~i~~al~~a~l~~ 350 (367)
++||+|++.+|+. |++||+.+... .+ ++++.++++..++.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 132 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC
Confidence 9999999988765 99999965321 11 235677788877754
No 291
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=2.5e-20 Score=154.52 Aligned_cols=81 Identities=27% Similarity=0.545 Sum_probs=74.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh-hhhhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i~ 311 (367)
|+++|++++|++. ++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..+++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5789999999642 499999999999999999999999999999999999999999999999999888764 4677899
Q ss_pred Eeec
Q 017723 312 IIPQ 315 (367)
Q Consensus 312 ~V~Q 315 (367)
|++|
T Consensus 79 ~~~q 82 (163)
T cd03216 79 MVYQ 82 (163)
T ss_pred EEEe
Confidence 9999
No 292
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=8.9e-21 Score=154.25 Aligned_cols=124 Identities=32% Similarity=0.464 Sum_probs=107.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++||+.+|.. ..+|+++|++||+|+.++|+||+|+|||||+..+.|+.++++|+|.+||.++.+++.+++-+.++.
T Consensus 2 I~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 688999999953 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccc-ccchhhhcCCCC-CC--------CHHHHHHHHHHcCccHH----HhhCccc
Q 017723 313 IPQEPTLF-RGSVRTNLDPLG-MY--------SDNEIWEAMEKCQLKAT----ISRLPML 358 (367)
Q Consensus 313 V~Q~~~lf-~~Ti~eNi~~~~-~~--------~~e~i~~al~~a~l~~~----i~~lp~g 358 (367)
.-|+.++- .-|+||=+.|++ ++ +...+.+|++-.+|.+. +.+|..|
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGG 139 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGG 139 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccc
Confidence 99999985 559999887753 22 33468889988888764 5555544
No 293
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.83 E-value=6e-20 Score=163.27 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=78.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC--CCCCCceEEECCeecCCCChhhhh-hh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDLR-TK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~r-~~ 309 (367)
|+++|++++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.+||.++.++++...+ +.
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 3499999999999999999999999999999999999 479999999999999888776654 57
Q ss_pred ceEeecCcccccc
Q 017723 310 LSIIPQEPTLFRG 322 (367)
Q Consensus 310 i~~V~Q~~~lf~~ 322 (367)
++|++|++.+++.
T Consensus 80 i~~~~q~~~~~~~ 92 (248)
T PRK09580 80 IFMAFQYPVEIPG 92 (248)
T ss_pred eEEEecCchhccc
Confidence 9999999987764
No 294
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2e-20 Score=151.98 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=96.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
+..++++.+|+.....+|+|+|++|.+||.++++||||||||||+|+++||.+|+.|+|.+||.+++.-.- .=++
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----ccee
Confidence 56788999998766679999999999999999999999999999999999999999999999998876543 3589
Q ss_pred eecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHh
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~ 353 (367)
|+|++-|++ -|+.||+.++- -.+ .+...+.+..++|.++=.
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~ 127 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH 127 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc
Confidence 999999887 48999998652 122 344566777888877543
No 295
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=5.5e-20 Score=143.13 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=107.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCChhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~ 308 (367)
.+.++||+.+-+. ...|.++|++|.+||.+-|.||||||||||+.-+.|.+++. +|++.+|++++..++- -++
T Consensus 2 ~l~l~nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQR 77 (213)
T ss_pred ceeeeeeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhh
Confidence 4678999987653 45899999999999999999999999999999999999886 5999999999988774 468
Q ss_pred hceEeecCcccccc-chhhhcCCCC------CCCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 309 KLSIIPQEPTLFRG-SVRTNLDPLG------MYSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~-Ti~eNi~~~~------~~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++|+.+||++||+- ++.+|+.+.- ++.......|+++.+++.+..+.|+.+
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tl 135 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATL 135 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhc
Confidence 99999999999976 8999997542 344556788999999999999998754
No 296
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=4.1e-20 Score=181.66 Aligned_cols=125 Identities=28% Similarity=0.502 Sum_probs=100.3
Q ss_pred eEEEEeeEEEeCC---------CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC
Q 017723 232 RIELEDLKVRYRP---------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (367)
Q Consensus 232 ~I~~~nvsf~Y~~---------~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~ 302 (367)
-|+++|++++|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 4899999999952 12459999999999999999999999999999999999984 8999999999998776
Q ss_pred hhh---hhhhceEeecCc--cccc-cchhhhcCCC----C-CC----CHHHHHHHHHHcCcc-HHHhhCcc
Q 017723 303 LKD---LRTKLSIIPQEP--TLFR-GSVRTNLDPL----G-MY----SDNEIWEAMEKCQLK-ATISRLPM 357 (367)
Q Consensus 303 ~~~---~r~~i~~V~Q~~--~lf~-~Ti~eNi~~~----~-~~----~~e~i~~al~~a~l~-~~i~~lp~ 357 (367)
... +|++++||+|++ .+|+ .|++||+.++ . .. .++++.++++..++. +.....|.
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc
Confidence 543 477899999998 3665 5999999642 1 11 134677889999886 45555444
No 297
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=6.7e-20 Score=197.47 Aligned_cols=127 Identities=24% Similarity=0.350 Sum_probs=107.5
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..|+++|+++.|+++++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+.+|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 4699999999996434559999999999999999999999999999999999999999999999999875 466788999
Q ss_pred eEeecCcccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPL---GMY----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~---~~~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++|++.+|+. |++|||.+. ... .++++.+.++..++.+..+..|..
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~ 1061 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQD 1061 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 999999999875 999999642 111 235688899999998876655543
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.81 E-value=4.3e-20 Score=181.23 Aligned_cols=119 Identities=23% Similarity=0.370 Sum_probs=95.2
Q ss_pred eEEEEeeEEEeCC---CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEEC-Cee---cCCCC--
Q 017723 232 RIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID-GLD---ICSMG-- 302 (367)
Q Consensus 232 ~I~~~nvsf~Y~~---~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~-g~~---i~~~~-- 302 (367)
-|+++|++++|++ +...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 22459999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hhhhhhhceEeecCccccc-cchhhhcCCC---C-C--CCHHHHHHHHHHcCccH
Q 017723 303 -LKDLRTKLSIIPQEPTLFR-GSVRTNLDPL---G-M--YSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 303 -~~~~r~~i~~V~Q~~~lf~-~Ti~eNi~~~---~-~--~~~e~i~~al~~a~l~~ 350 (367)
...+|++++||+|++.+|+ .|++||+.+. . + ..++++.++++..++.+
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 2345778999999998887 4999999631 1 1 12346778889988853
No 299
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.81 E-value=6.6e-20 Score=160.85 Aligned_cols=103 Identities=25% Similarity=0.421 Sum_probs=85.5
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccc-cchhhhc
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNL 328 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~-~Ti~eNi 328 (367)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+||+|++.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999988 5999998
Q ss_pred CCC-----CCCC----HHHHHHHHHHcCccHHHhhCcc
Q 017723 329 DPL-----GMYS----DNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 329 ~~~-----~~~~----~e~i~~al~~a~l~~~i~~lp~ 357 (367)
.+. ...+ ++++.++++..++.+.....|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 113 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChh
Confidence 642 1222 2347788999888877665544
No 300
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=4.4e-20 Score=160.62 Aligned_cols=111 Identities=32% Similarity=0.444 Sum_probs=98.4
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh----hhhceEeecCccccc-cc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFR-GS 323 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~i~~V~Q~~~lf~-~T 323 (367)
.++|+||+++.||+..|.|-||||||||++++.|+++|+.|+|+++|.|+..++.+++ |+++++|+|.+-||+ .|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4789999999999999999999999999999999999999999999999999998866 467999999999875 59
Q ss_pred hhhhcCCCCC---C----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 324 VRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 324 i~eNi~~~~~---~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|.||..++-+ . .+++..++++.++|+.|-...|+.|
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eL 165 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNEL 165 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccc
Confidence 9999987632 2 3457888999999999998887744
No 301
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.9e-20 Score=180.38 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=96.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-hhhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 310 (367)
-|+++|+++.|. . +|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.+
T Consensus 265 ~l~~~~l~~~~~---~-~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR---K-KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC---C-cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998762 2 8999999999999999999999999999999999999999999999998876543 4567789
Q ss_pred eEeecCc---cccc-cchhhhcCCCCC------------CC----HHHHHHHHHHcCcc-HHHhhCc
Q 017723 311 SIIPQEP---TLFR-GSVRTNLDPLGM------------YS----DNEIWEAMEKCQLK-ATISRLP 356 (367)
Q Consensus 311 ~~V~Q~~---~lf~-~Ti~eNi~~~~~------------~~----~e~i~~al~~a~l~-~~i~~lp 356 (367)
+||+|++ .+|+ -|++||+.+... .+ .+++.++++..++. +.....|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 9999984 5765 499999875311 01 13466777777774 4444333
No 302
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.81 E-value=3.9e-17 Score=150.86 Aligned_cols=335 Identities=14% Similarity=0.147 Sum_probs=202.7
Q ss_pred HhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 017723 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIV----AIPTVIVAKYIQGYYLSSARELMRMNGTTKA 89 (367)
Q Consensus 14 ~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (367)
+++++|+..+.+...+....+...++.++.+.+.+.-.+-....- +...+.+...+-+.+.++.-+...+....++
T Consensus 221 ~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g 300 (728)
T KOG0064|consen 221 NSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKG 300 (728)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence 468888888877777777777777766666555555443332211 1111222223334444455555555555667
Q ss_pred cHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-------C
Q 017723 90 PIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLL-------P 162 (367)
Q Consensus 90 ~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~ 162 (367)
.+...=+..+.+.++|..++..+...++.++.++.....+........|...+-+++.-.+..+.++++..+ .
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~ 380 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLA 380 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccC
Confidence 777777788999999999999999998888887776655555455555554443333322222211111100 0
Q ss_pred --CC---CCchH--HHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcC-----------CCC--CCCCC--
Q 017723 163 --GK---HLPGF--VGLSLS---YALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMH-----------LPP--EPPAI-- 217 (367)
Q Consensus 163 --g~---~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~-----------~~~--~~~~~-- 217 (367)
+. ...+. .-.+.. ...........++..+..+.+...--.|+.+.++ .+. +....
T Consensus 381 s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~ 460 (728)
T KOG0064|consen 381 SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRT 460 (728)
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccC
Confidence 11 01111 111111 1112222333334444455555555566654331 000 00000
Q ss_pred --CCCCCCCCC----CCCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE
Q 017723 218 --IEETKPPAS----WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (367)
Q Consensus 218 --~~~~~~~~~----~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I 291 (367)
...+..+.+ .....+|.++||-.--|..+ .+...++|.|++|.++-|.||+|||||+|.+.|.|+||...|..
T Consensus 461 ~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L 539 (728)
T KOG0064|consen 461 IDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL 539 (728)
T ss_pred ccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence 000000000 01234699999987776554 48999999999999999999999999999999999999988877
Q ss_pred EECCeecCCCChhhhhhhceEeecCccccccchhhhcCCC--------CCCCHHHHHHHHHHcCccHHHhhCccccCC
Q 017723 292 LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDS 361 (367)
Q Consensus 292 ~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~--------~~~~~e~i~~al~~a~l~~~i~~lp~gldt 361 (367)
..-- +.++-|+||.|+.=-||+||-|-+. ..++|+++++.++.+.|+..+++ ..|+|.
T Consensus 540 ~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da 605 (728)
T KOG0064|consen 540 SIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDA 605 (728)
T ss_pred ecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhh
Confidence 6521 2369999999999999999998532 13688999999999999877665 345654
No 303
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.81 E-value=1.4e-19 Score=177.79 Aligned_cols=119 Identities=23% Similarity=0.440 Sum_probs=96.7
Q ss_pred eEEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCCChh
Q 017723 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~~~~ 304 (367)
-|+++|++++|++. ...+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 23599999999999999999999999999999999999997 799999999999887654
Q ss_pred h---hh-hhceEeecCcc--ccc-cchhhhcCCC----CCC----CHHHHHHHHHHcCccH
Q 017723 305 D---LR-TKLSIIPQEPT--LFR-GSVRTNLDPL----GMY----SDNEIWEAMEKCQLKA 350 (367)
Q Consensus 305 ~---~r-~~i~~V~Q~~~--lf~-~Ti~eNi~~~----~~~----~~e~i~~al~~a~l~~ 350 (367)
. +| +.++||+|++. +++ .|+++|+... ... ..+++.++++..++.+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 145 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQ 145 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 3 33 57999999985 443 5899987421 111 2356888999999965
No 304
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.80 E-value=4.2e-20 Score=138.81 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=71.2
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhh
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eN 327 (367)
.+|++++|++++|+.++|+|+||||||||++++. +|++.++|.|+..++.++.++.+++++|+ +|++||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 4899999999999999999999999999999986 89999999999999999999999999999 999999999
Q ss_pred cCC
Q 017723 328 LDP 330 (367)
Q Consensus 328 i~~ 330 (367)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 964
No 305
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.2e-19 Score=179.16 Aligned_cols=118 Identities=21% Similarity=0.350 Sum_probs=94.5
Q ss_pred eEEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC----------
Q 017723 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC---------- 299 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~---------- 299 (367)
-|+++|++++|+.. ...+|+|+||++++||++||||+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999532 235999999999999999999999999999999999999999999999997552
Q ss_pred CCChh---hhh-hhceEeecCc--cccc-cchhhhcCCCC----CCC----HHHHHHHHHHcCcc
Q 017723 300 SMGLK---DLR-TKLSIIPQEP--TLFR-GSVRTNLDPLG----MYS----DNEIWEAMEKCQLK 349 (367)
Q Consensus 300 ~~~~~---~~r-~~i~~V~Q~~--~lf~-~Ti~eNi~~~~----~~~----~e~i~~al~~a~l~ 349 (367)
+.+.. .+| +.|+||+|+| .+++ .|++||+.+.. ..+ .+++.++++..++.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 156 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP 156 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC
Confidence 22322 233 4799999998 5776 59999996421 112 25678889999984
No 306
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-19 Score=177.52 Aligned_cols=118 Identities=19% Similarity=0.339 Sum_probs=94.9
Q ss_pred eEEEEeeEEEeCC-CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCceEEECCeecCCCCh-hhhhh
Q 017723 232 RIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGL-KDLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~-~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-p~~G~I~~~g~~i~~~~~-~~~r~ 308 (367)
-|+++|+++.|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.++.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4999999999953 23349999999999999999999999999999999999999 599999999999875543 45677
Q ss_pred hceEeecCc---ccc-ccchhhhcCCCC-----C---CC----HHHHHHHHHHcCcc
Q 017723 309 KLSIIPQEP---TLF-RGSVRTNLDPLG-----M---YS----DNEIWEAMEKCQLK 349 (367)
Q Consensus 309 ~i~~V~Q~~---~lf-~~Ti~eNi~~~~-----~---~~----~e~i~~al~~a~l~ 349 (367)
.++||+|++ .+| ..|+.||+.+.. . .+ .+++.++++..++.
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 395 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK 395 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCcc
Confidence 899999996 355 469999996431 0 11 23567778887774
No 307
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=6e-20 Score=162.86 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=90.2
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEE-----------ECCeecCCCChh
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK 304 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~-----------~~g~~i~~~~~~ 304 (367)
.||+++|++.. .+|+|+| .+++||+++|+|+||||||||+++|+|+++|++|+|. ++|+++.+...+
T Consensus 4 ~~~~~~y~~~~-~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNS-FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcc-hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 46899996433 4999999 4999999999999999999999999999999999996 889888766443
Q ss_pred hhhh--hceEeecCcccccc----chhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 305 DLRT--KLSIIPQEPTLFRG----SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 305 ~~r~--~i~~V~Q~~~lf~~----Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
..|. .+++++|++.+++. ++.+|+.. ...++++.++++..++.+.....|.
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~l~~~gl~~~~~~~~~ 138 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK--KDERGKLDELVDQLELRHVLDRNID 138 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhch--hHHHHHHHHHHHHcCCchhhcCChh
Confidence 3333 36888887776664 45555421 1234678899999998876665443
No 308
>PLN03211 ABC transporter G-25; Provisional
Probab=99.80 E-value=5e-19 Score=176.47 Aligned_cols=80 Identities=29% Similarity=0.437 Sum_probs=72.1
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC--CceEEECCeecCCCChhhhhhhceEeecCccccc-cc
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GS 323 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~--~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~-~T 323 (367)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||.++. ...+++++||+|++.+|+ .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999985 899999999874 245678999999999996 59
Q ss_pred hhhhcCC
Q 017723 324 VRTNLDP 330 (367)
Q Consensus 324 i~eNi~~ 330 (367)
++||+.+
T Consensus 157 V~E~l~~ 163 (659)
T PLN03211 157 VRETLVF 163 (659)
T ss_pred HHHHHHH
Confidence 9999964
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=2.4e-19 Score=193.29 Aligned_cols=128 Identities=18% Similarity=0.220 Sum_probs=106.4
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
.-|+++|++++|++....+|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.+ +.+..|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3599999999996433459999999999999999999999999999999999999999999999999865 456678899
Q ss_pred eEeecCccccc-cchhhhcCCC---CCCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~---~~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+||++.+++ -|++||+.+. ...+ ++++.++++..++.+..+..+..|
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~L 2071 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY 2071 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhC
Confidence 99999999886 5999998642 1122 234667899999988766655443
No 310
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=3.2e-19 Score=190.92 Aligned_cols=118 Identities=20% Similarity=0.303 Sum_probs=96.4
Q ss_pred eEEEEeeEEEeC--CCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC---CCCceEEECCeecCCCChhhh
Q 017723 232 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDL 306 (367)
Q Consensus 232 ~I~~~nvsf~Y~--~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~ 306 (367)
.++++||++.|+ +.++.+|+|+|+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999995 234569999999999999999999999999999999999998 78899999999884 257
Q ss_pred hhhceEeecCcc-ccccchhhhcCCC------CCCCH----HHHHHHHHHcCccHHHh
Q 017723 307 RTKLSIIPQEPT-LFRGSVRTNLDPL------GMYSD----NEIWEAMEKCQLKATIS 353 (367)
Q Consensus 307 r~~i~~V~Q~~~-lf~~Ti~eNi~~~------~~~~~----e~i~~al~~a~l~~~i~ 353 (367)
|+.++||+|++. ++..|++||+.+. ...++ ++++++++..++.+..+
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d 892 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD 892 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCC
Confidence 889999999865 5678999999642 12233 34677888887765543
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=2.3e-19 Score=177.02 Aligned_cols=87 Identities=28% Similarity=0.448 Sum_probs=78.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|+++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +.+++
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999622 4599999999999999999999999999999999999999999999975 14799
Q ss_pred EeecCcccccc-chhhhcCC
Q 017723 312 IIPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~ 330 (367)
||+|+|.+++. |++||+.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~ 93 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEE 93 (556)
T ss_pred EEecCCCCCCCCcHHHHHHH
Confidence 99999999875 99999864
No 312
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=1.7e-19 Score=176.93 Aligned_cols=124 Identities=28% Similarity=0.465 Sum_probs=96.6
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC--CCCCceEEEC----------------
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILID---------------- 294 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~--~p~~G~I~~~---------------- 294 (367)
|+++|++++|++ ..+|+|+||++++|++++|+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999953 34999999999999999999999999999999999996 7999999997
Q ss_pred -------CeecC-------CCC---hhhhhhhceEeecC-ccccc-cchhhhcCCC---CCCC----HHHHHHHHHHcCc
Q 017723 295 -------GLDIC-------SMG---LKDLRTKLSIIPQE-PTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQL 348 (367)
Q Consensus 295 -------g~~i~-------~~~---~~~~r~~i~~V~Q~-~~lf~-~Ti~eNi~~~---~~~~----~e~i~~al~~a~l 348 (367)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.+. ...+ ++++.++++..++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 13467889999998 56776 5999999642 1122 3467889999999
Q ss_pred cHHHhhCccc
Q 017723 349 KATISRLPML 358 (367)
Q Consensus 349 ~~~i~~lp~g 358 (367)
.+.....|..
T Consensus 159 ~~~~~~~~~~ 168 (520)
T TIGR03269 159 SHRITHIARD 168 (520)
T ss_pred hhhhhcCccc
Confidence 8877665543
No 313
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.79 E-value=1.9e-19 Score=175.92 Aligned_cols=118 Identities=20% Similarity=0.324 Sum_probs=95.3
Q ss_pred eEEEEeeEEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCceEEECCeecCCCCh-hhhhh
Q 017723 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGL-KDLRT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-~~G~I~~~g~~i~~~~~-~~~r~ 308 (367)
-|+++|++++|+.+ ...+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+. +.+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999432 23499999999999999999999999999999999999996 89999999999865443 46688
Q ss_pred hceEeecCc---cccc-cchhhhcCCCC--------CCC----HHHHHHHHHHcCcc
Q 017723 309 KLSIIPQEP---TLFR-GSVRTNLDPLG--------MYS----DNEIWEAMEKCQLK 349 (367)
Q Consensus 309 ~i~~V~Q~~---~lf~-~Ti~eNi~~~~--------~~~----~e~i~~al~~a~l~ 349 (367)
+++||+|++ .+|+ .|++||+.+.. ..+ ++++.++++..++.
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 999999996 3665 59999997531 011 23567778887774
No 314
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.79 E-value=6.3e-20 Score=182.79 Aligned_cols=110 Identities=24% Similarity=0.318 Sum_probs=87.8
Q ss_pred CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCChhhhhhhceEeecCccccc-
Q 017723 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR- 321 (367)
Q Consensus 246 ~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~- 321 (367)
++.+|+|+|+++++||.++|+|+||||||||+++|+|..+|. +|+|.+||.++. ...+|+.++||+|++.+++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 456999999999999999999999999999999999999885 799999999875 4678899999999999985
Q ss_pred cchhhhcCCCC------CCCHH----HHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 322 GSVRTNLDPLG------MYSDN----EIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 322 ~Ti~eNi~~~~------~~~~e----~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
.|++|||.++. ..+.+ ++.++++..+ |++..||++|+
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~ 160 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGV 160 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCC
Confidence 59999996421 12222 2344444433 34567888886
No 315
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.2e-19 Score=148.27 Aligned_cols=120 Identities=28% Similarity=0.446 Sum_probs=101.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
+++.+++-+|++- ..+++|+||+++.|+.++|.|++||||||+++.|..++.|++|+|++||+|.... +...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 6788999999763 3389999999999999999999999999999999999999999999999999775 5678999999
Q ss_pred eecCccccc-cchhhhcCCCC-------CCCHHHHHHHHHHcCccHHHhh
Q 017723 313 IPQEPTLFR-GSVRTNLDPLG-------MYSDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 313 V~Q~~~lf~-~Ti~eNi~~~~-------~~~~e~i~~al~~a~l~~~i~~ 354 (367)
++-+.-|+. -|.+|||.++. .-.+.++.+..|.-++.+.+++
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r 129 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR 129 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH
Confidence 998887875 59999997532 1234577778888888777653
No 316
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.78 E-value=8e-19 Score=165.95 Aligned_cols=128 Identities=29% Similarity=0.466 Sum_probs=102.7
Q ss_pred eEEEEeeEEEeCC------C---CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCee--cCC
Q 017723 232 RIELEDLKVRYRP------N---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--ICS 300 (367)
Q Consensus 232 ~I~~~nvsf~Y~~------~---~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~--i~~ 300 (367)
-++++|++.+|.. . ...+++|+||++++||++||||+||||||||++.|+|+.+|++|+|.++|.+ +..
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 4789999999963 1 2358999999999999999999999999999999999999999999999977 332
Q ss_pred CChhhhhhhceEeecCccc---cccchhhhcCC----CCC----CCHHHHHHHHHHcCccH-HHhhCcccc
Q 017723 301 MGLKDLRTKLSIIPQEPTL---FRGSVRTNLDP----LGM----YSDNEIWEAMEKCQLKA-TISRLPMLL 359 (367)
Q Consensus 301 ~~~~~~r~~i~~V~Q~~~l---f~~Ti~eNi~~----~~~----~~~e~i~~al~~a~l~~-~i~~lp~gl 359 (367)
-+....|+++-+|+|||+- -..||+++|.- ... ...+++.+.++.++|.+ +..+-|.-+
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhc
Confidence 2344678899999999993 46799999851 111 12346888899999987 567777643
No 317
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.78 E-value=3.8e-19 Score=156.19 Aligned_cols=99 Identities=26% Similarity=0.424 Sum_probs=81.0
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC----CCceEEECCeecCCCChhhhhhhceEeecCcc-ccc--
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LFR-- 321 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~-lf~-- 321 (367)
+++|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 233468999999995 343
Q ss_pred cchhhhcCCC----CC---CCHHHHHHHHHHcCcc
Q 017723 322 GSVRTNLDPL----GM---YSDNEIWEAMEKCQLK 349 (367)
Q Consensus 322 ~Ti~eNi~~~----~~---~~~e~i~~al~~a~l~ 349 (367)
.|+.||+... .. ..++++.++++..++.
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 113 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLP 113 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC
Confidence 5888887421 11 1234688899999887
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=5.1e-19 Score=172.49 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=95.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCceEEECCeecCC-CChhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS-MGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-~~G~I~~~g~~i~~-~~~~~~r~~ 309 (367)
-|+++|+++.|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|++
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999953 3499999999999999999999999999999999998876 69999999987632 233456789
Q ss_pred ceEeecCccccc---cchhhhcCCC--C------CCC---HHHHHHHHHHcCccH-HHhhCc
Q 017723 310 LSIIPQEPTLFR---GSVRTNLDPL--G------MYS---DNEIWEAMEKCQLKA-TISRLP 356 (367)
Q Consensus 310 i~~V~Q~~~lf~---~Ti~eNi~~~--~------~~~---~e~i~~al~~a~l~~-~i~~lp 356 (367)
++|++|++.++. .|+++++... . ... ++++.++++..++.+ ....-|
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 399 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF 399 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch
Confidence 999999987643 4677775321 0 111 346788999999876 544433
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.8e-19 Score=172.25 Aligned_cols=85 Identities=22% Similarity=0.440 Sum_probs=76.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999953 34999999999999999999999999999999999999999999999872 36999
Q ss_pred eecCcccccc-chhhhcCC
Q 017723 313 IPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~ 330 (367)
|+|++.+|+. |++||+.+
T Consensus 69 ~~q~~~~~~~~tv~e~l~~ 87 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIM 87 (530)
T ss_pred EeccCCcCCCCcHHHHHHH
Confidence 9999988764 99999853
No 320
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.1e-18 Score=152.15 Aligned_cols=127 Identities=28% Similarity=0.510 Sum_probs=97.5
Q ss_pred EEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-C----CCceEEECCeecCCCChhh
Q 017723 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-P----ENGRILIDGLDICSMGLKD 305 (367)
Q Consensus 233 I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-p----~~G~I~~~g~~i~~~~~~~ 305 (367)
++++|++..|+.. ...+++|+||++++||.+||||+|||||||+.+.|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999988543 2359999999999999999999999999999999999998 4 5699999999999999875
Q ss_pred h----hhhceEeecCccc-ccc--chhhhcC----CCCCC-C----HHHHHHHHHHcCccH---HHhhCcccc
Q 017723 306 L----RTKLSIIPQEPTL-FRG--SVRTNLD----PLGMY-S----DNEIWEAMEKCQLKA---TISRLPMLL 359 (367)
Q Consensus 306 ~----r~~i~~V~Q~~~l-f~~--Ti~eNi~----~~~~~-~----~e~i~~al~~a~l~~---~i~~lp~gl 359 (367)
+ .+.|++|+|||.- |+- ||.+-+. ..... + .+++.++++.+++.+ .++.-|.-|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhel 154 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHEL 154 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCccc
Confidence 3 3469999999872 332 4444432 11111 1 347888999999986 445566543
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.5e-18 Score=170.62 Aligned_cols=113 Identities=17% Similarity=0.307 Sum_probs=93.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 5999999999964 34999999999999999999999999999999999999999999999872 4799
Q ss_pred EeecCcc--cc-ccchhhhcCCC--CCCCHHHHHHHHHHcCcc-HHHhhCcc
Q 017723 312 IIPQEPT--LF-RGSVRTNLDPL--GMYSDNEIWEAMEKCQLK-ATISRLPM 357 (367)
Q Consensus 312 ~V~Q~~~--lf-~~Ti~eNi~~~--~~~~~e~i~~al~~a~l~-~~i~~lp~ 357 (367)
||+|++. ++ ..|++||+... ....++++.++++..++. +.....|.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 437 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVK 437 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCccc
Confidence 9999974 44 36999998542 123456788999999884 45554443
No 322
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.77 E-value=8.5e-19 Score=153.14 Aligned_cols=111 Identities=25% Similarity=0.292 Sum_probs=83.5
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
+.++|++.+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.... ...
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----~~~-- 93 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGG-- 93 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc-----ccc--
Confidence 677888888854 35999999999999999999999999999999999999999999999998764211 111
Q ss_pred eecCccccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCc
Q 017723 313 IPQEPTLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp 356 (367)
.+..+.|++||+.+.. ..+ ++++.++++..++.+.....+
T Consensus 94 ----~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (224)
T cd03220 94 ----GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV 140 (224)
T ss_pred ----cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh
Confidence 1223579999986421 112 235667777777766654433
No 323
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.6e-18 Score=149.63 Aligned_cols=99 Identities=31% Similarity=0.528 Sum_probs=81.9
Q ss_pred eEEEEeeEEEeCCCC-------CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh
Q 017723 232 RIELEDLKVRYRPNT-------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~-------~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~ 304 (367)
-++++|++..|+-.. ..+++||||+|++||.++|||+|||||||+.++|+|+++|++|+|+++|.++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 378899999986432 25899999999999999999999999999999999999999999999999987766
Q ss_pred hhhhhceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccH-HHhhCcccc
Q 017723 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA-TISRLPMLL 359 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~-~i~~lp~gl 359 (367)
.+...+++.+.++++++.+ +..+.|+-+
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhel 110 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYPHEL 110 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCccc
Confidence 1123567888888888877 556666543
No 324
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.77 E-value=6.8e-19 Score=153.71 Aligned_cols=99 Identities=22% Similarity=0.324 Sum_probs=81.5
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc---cccchhhhcCCC
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL---FRGSVRTNLDPL 331 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l---f~~Ti~eNi~~~ 331 (367)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++|++|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 356789999999987 457999998542
Q ss_pred C---------C--CCHHHHHHHHHHcCccHHHhhCccc
Q 017723 332 G---------M--YSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 332 ~---------~--~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
. . ..++++.++++..++.++....|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 113 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhh
Confidence 1 1 1235688899999998777655543
No 325
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=1.1e-18 Score=170.39 Aligned_cols=111 Identities=20% Similarity=0.394 Sum_probs=91.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-hhhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 310 (367)
-|+++|+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 589999984 27999999999999999999999999999999999999999999999999887664 3467789
Q ss_pred eEeecCc---ccc-ccchhhhcCCCC-----C----CC----HHHHHHHHHHcCcc
Q 017723 311 SIIPQEP---TLF-RGSVRTNLDPLG-----M----YS----DNEIWEAMEKCQLK 349 (367)
Q Consensus 311 ~~V~Q~~---~lf-~~Ti~eNi~~~~-----~----~~----~e~i~~al~~a~l~ 349 (367)
+||+|++ .+| +.|++||+.+.. . .+ ++++.++++..++.
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 385 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC
Confidence 9999997 344 469999996421 0 11 23567778887773
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.77 E-value=1e-18 Score=172.36 Aligned_cols=87 Identities=29% Similarity=0.454 Sum_probs=78.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|+++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +..++
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48999999999633 3599999999999999999999999999999999999999999999975 24799
Q ss_pred EeecCccccc-cchhhhcCC
Q 017723 312 IIPQEPTLFR-GSVRTNLDP 330 (367)
Q Consensus 312 ~V~Q~~~lf~-~Ti~eNi~~ 330 (367)
||+|+|.+++ .|++||+.+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~ 91 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEE 91 (552)
T ss_pred EEeccCCCCCCCcHHHHHHH
Confidence 9999999986 499999964
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.8e-18 Score=168.90 Aligned_cols=111 Identities=20% Similarity=0.352 Sum_probs=90.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-hhhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 310 (367)
.++++|+++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...++ +..|+.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4899999842 38999999999999999999999999999999999999999999999998875543 4556789
Q ss_pred eEeecCcc---cc-ccchhhhcCCCCC----------C---CHHHHHHHHHHcCc
Q 017723 311 SIIPQEPT---LF-RGSVRTNLDPLGM----------Y---SDNEIWEAMEKCQL 348 (367)
Q Consensus 311 ~~V~Q~~~---lf-~~Ti~eNi~~~~~----------~---~~e~i~~al~~a~l 348 (367)
+|++|++. +| +.|+.||+.++.. . .++++.++++..++
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 385 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNI 385 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCc
Confidence 99999973 55 4799999865311 0 12356677777776
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.76 E-value=1.4e-18 Score=153.46 Aligned_cols=105 Identities=26% Similarity=0.311 Sum_probs=84.5
Q ss_pred EEeCCCCCcceeeeeeEec-----CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEee
Q 017723 240 VRYRPNTPLVLKGITCTFK-----EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~-----~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~ 314 (367)
|+|++..+ .+++++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 1 ~~y~~~~~-~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMKK-TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCccccc-ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 67875544 8889988887 69999999999999999999999999999999999984 699999
Q ss_pred cCcc-ccccchhhhcCCCC-C--CCHHHHHHHHHHcCccHHHhhCcc
Q 017723 315 QEPT-LFRGSVRTNLDPLG-M--YSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 315 Q~~~-lf~~Ti~eNi~~~~-~--~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
|++. .++.|++||+.... . ...+...++++..++.+.....|.
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 114 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVP 114 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChh
Confidence 9997 47899999986421 1 123446778888888776654443
No 329
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.1e-18 Score=147.79 Aligned_cols=109 Identities=24% Similarity=0.301 Sum_probs=96.8
Q ss_pred eeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC----ChhhhhhhceEeecCccccc-cchh
Q 017723 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTKLSIIPQEPTLFR-GSVR 325 (367)
Q Consensus 251 ~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~----~~~~~r~~i~~V~Q~~~lf~-~Ti~ 325 (367)
=++||+.+....+||-|+||||||||+|++.|+..|++|.|.+||.-+.+- ....-+++||||+||..||+ -|++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 368899998899999999999999999999999999999999999766543 44566899999999999996 4999
Q ss_pred hhcCCCC-CCCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 326 TNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 326 eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
-|++++. ..+.++..+++..-++.+++.+.|..|
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~L 129 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTL 129 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCCCcc
Confidence 9999884 556789999999999999999999866
No 330
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.75 E-value=3.4e-18 Score=161.71 Aligned_cols=127 Identities=24% Similarity=0.462 Sum_probs=102.4
Q ss_pred eEEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC----CceEEECCeecCCCChhh
Q 017723 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE----NGRILIDGLDICSMGLKD 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~----~G~I~~~g~~i~~~~~~~ 305 (367)
-++++|++..|.... ..+++|+||++.+||.+||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 489999999985433 24999999999999999999999999999999999999998 899999999999998765
Q ss_pred h----hhhceEeecCcc-cccc--chhhhcC----CCCC----CCHHHHHHHHHHcCccHHHhh--Cccc
Q 017723 306 L----RTKLSIIPQEPT-LFRG--SVRTNLD----PLGM----YSDNEIWEAMEKCQLKATISR--LPML 358 (367)
Q Consensus 306 ~----r~~i~~V~Q~~~-lf~~--Ti~eNi~----~~~~----~~~e~i~~al~~a~l~~~i~~--lp~g 358 (367)
+ .+.|++|||+|. .++- ||.+-|+ .... ...++..+.++++++.+-... .|+-
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPhe 154 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ 154 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcc
Confidence 5 356999999987 4554 6666553 1111 234578889999999887765 5553
No 331
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.75 E-value=1.6e-16 Score=141.96 Aligned_cols=182 Identities=16% Similarity=0.280 Sum_probs=147.3
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++++.+...++..++...+.++.++..
T Consensus 90 ~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 169 (275)
T PF00664_consen 90 SYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLS 169 (275)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhcccccccc
Confidence 46888999999999999999999999999989999999999999999999999998888777888888888888888888
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-H-
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-V- 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~- 159 (367)
++..++.++..+.+.|.++|+++||.|+.|+++.+++++..++..+...+......+.......+..+...++.++. .
T Consensus 170 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 249 (275)
T PF00664_consen 170 KKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYL 249 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999888777776666666666555555555333333322 2
Q ss_pred -HhCCCCCchHHHHHHHHHHHHHHH
Q 017723 160 -LLPGKHLPGFVGLSLSYALTLSSI 183 (367)
Q Consensus 160 -~~~g~~~~~~~~~~~~~~~~~~~~ 183 (367)
...|..++|.+..++.+...+..|
T Consensus 250 ~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 250 SVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp -HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 234888888877777766555443
No 332
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.6e-18 Score=140.40 Aligned_cols=117 Identities=23% Similarity=0.384 Sum_probs=97.2
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
+.+|++. ..++..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.++.... +.+++++-|.
T Consensus 4 ~a~~L~~--~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yL 80 (209)
T COG4133 4 EAENLSC--ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYL 80 (209)
T ss_pred hhhhhhh--ccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHh
Confidence 3445544 344556999999999999999999999999999999999999999999999999887754 4457888888
Q ss_pred ecCccc-cccchhhhcCCCC----CCCHHHHHHHHHHcCccHHHh
Q 017723 314 PQEPTL-FRGSVRTNLDPLG----MYSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 314 ~Q~~~l-f~~Ti~eNi~~~~----~~~~e~i~~al~~a~l~~~i~ 353 (367)
-..+-+ -+-|+.||+.|.. ..+++.+++|++.++|..+.+
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d 125 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED 125 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc
Confidence 887776 5669999998642 356889999999999987644
No 333
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.75 E-value=4.8e-18 Score=151.59 Aligned_cols=98 Identities=24% Similarity=0.251 Sum_probs=78.2
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccc-cchh
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVR 325 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~-~Ti~ 325 (367)
.++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 35899999999999999999999999999999999999999999999983 467788887664 6999
Q ss_pred hhcCCC---CCCCHHH----HHHHHHHcCccHHHhhCcc
Q 017723 326 TNLDPL---GMYSDNE----IWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 326 eNi~~~---~~~~~e~----i~~al~~a~l~~~i~~lp~ 357 (367)
||+.+. ...+.++ +.++++..++.+++...+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVK 142 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcc
Confidence 998642 1223333 3456777788877665443
No 334
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=1e-18 Score=144.28 Aligned_cols=87 Identities=31% Similarity=0.497 Sum_probs=80.6
Q ss_pred CCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc---c
Q 017723 244 PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL---F 320 (367)
Q Consensus 244 ~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l---f 320 (367)
+.++++|+++|++|++|+.+.|+|.+|||||||++.+.|-.+|++|+|.+||+|+..++....-..++-|+|||-. -
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 3456699999999999999999999999999999999999999999999999999999999999999999999983 3
Q ss_pred ccchhhhcCC
Q 017723 321 RGSVRTNLDP 330 (367)
Q Consensus 321 ~~Ti~eNi~~ 330 (367)
+-||.||+.+
T Consensus 96 ~lTieENl~l 105 (263)
T COG1101 96 ELTIEENLAL 105 (263)
T ss_pred cccHHHHHHH
Confidence 5699999964
No 335
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.8e-18 Score=139.67 Aligned_cols=79 Identities=42% Similarity=0.747 Sum_probs=74.1
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEee
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~ 314 (367)
++|++|.|+.. .+++++||+|++|+.++|+|+||||||||+++|.|+++|++|+|+++|.++.+...+.+++.++|++
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999643 4999999999999999999999999999999999999999999999999998887888899999999
Q ss_pred c
Q 017723 315 Q 315 (367)
Q Consensus 315 Q 315 (367)
|
T Consensus 80 q 80 (157)
T cd00267 80 Q 80 (157)
T ss_pred e
Confidence 9
No 336
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.75 E-value=5.1e-18 Score=137.56 Aligned_cols=70 Identities=39% Similarity=0.654 Sum_probs=64.3
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
++++|++++|++. ++++++||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4789999999643 4999999999999999999999999999999999999999999999994 47899
Q ss_pred eec
Q 017723 313 IPQ 315 (367)
Q Consensus 313 V~Q 315 (367)
++|
T Consensus 68 ~~~ 70 (144)
T cd03221 68 FEQ 70 (144)
T ss_pred Ecc
Confidence 998
No 337
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=2.8e-18 Score=138.11 Aligned_cols=105 Identities=26% Similarity=0.414 Sum_probs=84.3
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc-ccc----
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LFR---- 321 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~-lf~---- 321 (367)
..+++.+||++++|+.+||+|.+|||||||++.|.|..+|++|+|++||+++.-=+....-++|-+++|||. -|+
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 348999999999999999999999999999999999999999999999999877777777788999999987 233
Q ss_pred -cchhh-----hcCCCCCCCHHHHHHHHHHcCccHH
Q 017723 322 -GSVRT-----NLDPLGMYSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 322 -~Ti~e-----Ni~~~~~~~~e~i~~al~~a~l~~~ 351 (367)
|+|.| |=.+..+...+++.+-++.+||...
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd 141 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD 141 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcc
Confidence 22222 2112223455788899999988654
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=9.1e-18 Score=165.74 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=87.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|+++.|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ++ .++
T Consensus 324 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~ 390 (556)
T PRK11819 324 VIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLA 390 (556)
T ss_pred EEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEE
Confidence 5999999999954 3499999999999999999999999999999999999999999999954 21 699
Q ss_pred EeecCc-cccc-cchhhhcCCCC-----CCCHHHHHHHHHHcCccH
Q 017723 312 IIPQEP-TLFR-GSVRTNLDPLG-----MYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 312 ~V~Q~~-~lf~-~Ti~eNi~~~~-----~~~~e~i~~al~~a~l~~ 350 (367)
||+|++ .++. -|++||+.+.. ...+++.+.+++..++.+
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 436 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG 436 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh
Confidence 999997 5654 59999986431 112445667888888853
No 339
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.9e-18 Score=142.79 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=98.0
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-hhhhhh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTK 309 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~ 309 (367)
.-|+++||+++|.+ +.+|+|||+++++||+-+|+|++|||||||++++.|.++|++|.+.+-|+....-+. .++|++
T Consensus 30 ~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 35999999999943 459999999999999999999999999999999999999999999999999998888 999999
Q ss_pred ceEeecCcc---ccccchhhhcC--------CCC-CCCHH---HHHHHHHHcCccHHHh
Q 017723 310 LSIIPQEPT---LFRGSVRTNLD--------PLG-MYSDN---EIWEAMEKCQLKATIS 353 (367)
Q Consensus 310 i~~V~Q~~~---lf~~Ti~eNi~--------~~~-~~~~e---~i~~al~~a~l~~~i~ 353 (367)
||+|+-+-+ .-+.+++|=+. ... +++++ +....++..++.+..+
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~ 166 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD 166 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhcc
Confidence 999986544 23446666553 112 44554 4555677777776443
No 340
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-17 Score=158.20 Aligned_cols=115 Identities=25% Similarity=0.290 Sum_probs=89.6
Q ss_pred eEEEEeeEEEeCCCC-CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 232 RIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~-~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
.++++|++|+|+... +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999996542 4599999999999999999999999999999999999999999999999652
Q ss_pred eEeecCccccc-cchhhhcCCCC---CCCHH----HHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~~---~~~~e----~i~~al~~a~l~~~i~~lp~gl 359 (367)
++.+.+.+++ .|++||+.+.. ..+++ ++.++++.+++.+++...|..|
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~L 144 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY 144 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccC
Confidence 1233344433 59999986421 22332 3557888899988877665443
No 341
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.73 E-value=6.1e-18 Score=165.35 Aligned_cols=111 Identities=23% Similarity=0.423 Sum_probs=89.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh-hhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 310 (367)
-|+++|++. . +|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +|..+
T Consensus 268 ~l~~~~l~~------~-~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG------E-GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC------C-CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 499999983 1 699999999999999999999999999999999999999999999999998776554 45689
Q ss_pred eEeecCc---cccc-cchhhhcCCC-----C---CC--CHHHHHHHHHHcCcc
Q 017723 311 SIIPQEP---TLFR-GSVRTNLDPL-----G---MY--SDNEIWEAMEKCQLK 349 (367)
Q Consensus 311 ~~V~Q~~---~lf~-~Ti~eNi~~~-----~---~~--~~e~i~~al~~a~l~ 349 (367)
+||||++ .+|+ .|+.+|+... . .. .++++.++++..++.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK 393 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC
Confidence 9999986 3665 4999998421 0 11 123466777777764
No 342
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=5.2e-18 Score=143.67 Aligned_cols=97 Identities=25% Similarity=0.327 Sum_probs=76.8
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhh
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~e 326 (367)
.++|+||||++++||+++|||++|||||||+++|+|.|+|++|+|.++|.-..-+.. ..|+- -+-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~------pelTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFD------PELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCC------cccchHH
Confidence 469999999999999999999999999999999999999999999999953322221 12221 2458999
Q ss_pred hcCC-----C--CCCCHHHHHHHHHHcCccHHHhh
Q 017723 327 NLDP-----L--GMYSDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 327 Ni~~-----~--~~~~~e~i~~al~~a~l~~~i~~ 354 (367)
||.+ + ....++.+.+..+-|+|.+|+..
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~ 143 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ 143 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9853 1 23356778889999999999875
No 343
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=1.5e-17 Score=164.11 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=87.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ++ .++
T Consensus 322 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLA 388 (552)
T ss_pred EEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEE
Confidence 5999999999954 3499999999999999999999999999999999999999999999954 21 699
Q ss_pred EeecCcc-ccc-cchhhhcCCCCC---C--CHHHHHHHHHHcCccH
Q 017723 312 IIPQEPT-LFR-GSVRTNLDPLGM---Y--SDNEIWEAMEKCQLKA 350 (367)
Q Consensus 312 ~V~Q~~~-lf~-~Ti~eNi~~~~~---~--~~e~i~~al~~a~l~~ 350 (367)
|++|++. +++ .|++||+.+... . .+++..++++..++.+
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 434 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG 434 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh
Confidence 9999973 554 599999965321 1 2345667888888753
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=2.2e-17 Score=165.25 Aligned_cols=105 Identities=19% Similarity=0.362 Sum_probs=86.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++||+++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+ |.++ .++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4999999999953 34999999999999999999999999999999999999999999999 4332 699
Q ss_pred EeecCc-ccccc-chhhhcCCCC-CC--C--HHHHHHHHHHcCcc
Q 017723 312 IIPQEP-TLFRG-SVRTNLDPLG-MY--S--DNEIWEAMEKCQLK 349 (367)
Q Consensus 312 ~V~Q~~-~lf~~-Ti~eNi~~~~-~~--~--~e~i~~al~~a~l~ 349 (367)
|++|++ .+++. |+.||+.... .. + ++++.+.++..++.
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 430 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH 430 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC
Confidence 999986 46554 9999996531 11 2 45677778877774
No 345
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.3e-17 Score=162.52 Aligned_cols=92 Identities=17% Similarity=0.401 Sum_probs=79.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh-hhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 310 (367)
-|+++|+++.| +.+|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++...+.. ..|+.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 59999999975 2399999999999999999999999999999999999999999999999999876654 346779
Q ss_pred eEeecCcc---ccc-cchhhh
Q 017723 311 SIIPQEPT---LFR-GSVRTN 327 (367)
Q Consensus 311 ~~V~Q~~~---lf~-~Ti~eN 327 (367)
+|++|++. +|+ .|+.+|
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred EEcCCchhhCCcccCCcHHHh
Confidence 99999963 555 466666
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=3e-17 Score=164.71 Aligned_cols=113 Identities=15% Similarity=0.278 Sum_probs=89.6
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
.-|+++||+|+|++. +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3499999999999999999999999999999999999999999999875 2479
Q ss_pred eEeecCccccccchhhhcCC-----CCCCCHHHHHHHHHHcCccH-HHhhCc
Q 017723 311 SIIPQEPTLFRGSVRTNLDP-----LGMYSDNEIWEAMEKCQLKA-TISRLP 356 (367)
Q Consensus 311 ~~V~Q~~~lf~~Ti~eNi~~-----~~~~~~e~i~~al~~a~l~~-~i~~lp 356 (367)
+|++|++. ...++.+|... ....+++++.++++..++.+ .....|
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~ 625 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM 625 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCc
Confidence 99999863 23345555321 12346788999999999974 444433
No 347
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.71 E-value=7e-17 Score=145.04 Aligned_cols=126 Identities=34% Similarity=0.533 Sum_probs=101.8
Q ss_pred ceEEEEeeEEEeCCC---------CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC
Q 017723 231 GRIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~---------~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~ 301 (367)
.-++.+||...||-. ...+++++||+.++||.++|||+||||||||-..|+|+.++. |+|.++|.++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 458999998888521 224799999999999999999999999999999999999876 9999999999999
Q ss_pred Chhh---hhhhceEeecCcc--c-cccchhhhcCCC----C-C----CCHHHHHHHHHHcCccHHHh-hCcc
Q 017723 302 GLKD---LRTKLSIIPQEPT--L-FRGSVRTNLDPL----G-M----YSDNEIWEAMEKCQLKATIS-RLPM 357 (367)
Q Consensus 302 ~~~~---~r~~i~~V~Q~~~--l-f~~Ti~eNi~~~----~-~----~~~e~i~~al~~a~l~~~i~-~lp~ 357 (367)
+.+. +|+++-+|+|||+ | -..||.+=|.-+ + . -.++++.+|++.++|+.-.. +-|+
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh 425 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH 425 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc
Confidence 8774 5889999999998 3 345776665321 1 1 24568999999999998653 4554
No 348
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.6e-17 Score=136.22 Aligned_cols=118 Identities=30% Similarity=0.359 Sum_probs=98.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC--CCCCCceEEECCeecCCCChhhh-hh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~ 308 (367)
-++++|+..+-.+. +.+|+++||+|++||..||.||+|||||||.+.|+|. |++++|+|.+||.|+.++++++. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 37889998877433 3599999999999999999999999999999999996 59999999999999999998876 55
Q ss_pred hceEeecCcccccc-chhhhcCCCC----C------CCHHHHHHHHHHcCccH
Q 017723 309 KLSIIPQEPTLFRG-SVRTNLDPLG----M------YSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~-Ti~eNi~~~~----~------~~~e~i~~al~~a~l~~ 350 (367)
-+...+|.|.=++| |+.+=+..+- . .-.++++++++..++++
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~ 134 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE 134 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH
Confidence 69999999998888 6665553210 1 12568888999999998
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.71 E-value=4e-17 Score=174.58 Aligned_cols=121 Identities=21% Similarity=0.221 Sum_probs=97.2
Q ss_pred eEEEEeeEEEeCC-----------CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC--CCceEEECCeec
Q 017723 232 RIELEDLKVRYRP-----------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDI 298 (367)
Q Consensus 232 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p--~~G~I~~~g~~i 298 (367)
.+.|+||+|..+. +...+|+|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5999999999841 123599999999999999999999999999999999999874 789999999876
Q ss_pred CCCChhhhhhhceEeecCccccc-cchhhhcCCC------CCCCHH----HHHHHHHHcCccHHHhhC
Q 017723 299 CSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPL------GMYSDN----EIWEAMEKCQLKATISRL 355 (367)
Q Consensus 299 ~~~~~~~~r~~i~~V~Q~~~lf~-~Ti~eNi~~~------~~~~~e----~i~~al~~a~l~~~i~~l 355 (367)
. ...+|+.++||+|++.+++ .|++||+.+. .+.+++ +++++++..++.+..+..
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~ 1011 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAI 1011 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCc
Confidence 4 3456788999999987765 5999999642 122322 477888888887765544
No 350
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=2.5e-17 Score=134.07 Aligned_cols=120 Identities=24% Similarity=0.379 Sum_probs=102.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC-eecCCCChhhh-hhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-LDICSMGLKDL-RTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g-~~i~~~~~~~~-r~~ 309 (367)
-+.++|||.+++. -.+|+++||++++||.-+|+||+|+||||++..|.|--+|++|+++++| .|+..++...+ |.-
T Consensus 5 iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 4788999999853 3499999999999999999999999999999999999999999999999 99999988766 555
Q ss_pred ceEeecCcccccc-chhhhcCC-------------CC--CCCHHHHHHHHHHcCccHHHh
Q 017723 310 LSIIPQEPTLFRG-SVRTNLDP-------------LG--MYSDNEIWEAMEKCQLKATIS 353 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi~~-------------~~--~~~~e~i~~al~~a~l~~~i~ 353 (367)
|+=-+|.|..|.. |++||+.+ +. ....+++.++|...+|.+.-.
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~ 142 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD 142 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh
Confidence 9999999999976 99999832 11 112348999999999887654
No 351
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.69 E-value=4.4e-17 Score=141.09 Aligned_cols=69 Identities=25% Similarity=0.393 Sum_probs=60.7
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEE-ECCeecCCCChhhhhhhceEeecCcccccc-chhh
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRT 326 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~-~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-Ti~e 326 (367)
+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777532 13467888876 9999
Q ss_pred hcCC
Q 017723 327 NLDP 330 (367)
Q Consensus 327 Ni~~ 330 (367)
|+.+
T Consensus 69 nl~~ 72 (213)
T PRK15177 69 NARM 72 (213)
T ss_pred HHHH
Confidence 9964
No 352
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=4.6e-17 Score=137.06 Aligned_cols=111 Identities=23% Similarity=0.459 Sum_probs=91.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.+++++|+-+|. +..+++||||++++|+..+++|++|+||||.+++|+|+++|++|+|.|+|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg--~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFG--DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccC--ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 478999999994 3459999999999999999999999999999999999999999999999998855 5567999
Q ss_pred EeecCcccccc-chhhhcCCC---CCCCHHH----HHHHHHHcCc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPL---GMYSDNE----IWEAMEKCQL 348 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~---~~~~~e~----i~~al~~a~l 348 (367)
|.|.+--|++. |+.|-+.+. ...+.++ +...++..++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i 120 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI 120 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccc
Confidence 99999999854 899998653 1234443 4445555444
No 353
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=2.2e-17 Score=132.56 Aligned_cols=124 Identities=27% Similarity=0.403 Sum_probs=101.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC---------
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--------- 302 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~--------- 302 (367)
.++++|+--+|..- .+|+++|++.++|+.+.|+|.|||||||+++++.=+-.|+.|.|.++|..++-.+
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58889998899533 3999999999999999999999999999999999999999999999998776332
Q ss_pred ----hhhhhhhceEeecCcccc-ccchhhhcCC------CCC--CCHHHHHHHHHHcCccHHHhhCcc
Q 017723 303 ----LKDLRTKLSIIPQEPTLF-RGSVRTNLDP------LGM--YSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 303 ----~~~~r~~i~~V~Q~~~lf-~~Ti~eNi~~------~~~--~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
..-+|.+.++|+|+..|+ +.|+.||+-- +.. .--|+.+..+.++++.+--+.-|-
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~ 151 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA 151 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc
Confidence 235789999999999997 5699999731 111 122456677889999998876664
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=99.69 E-value=9.6e-17 Score=158.25 Aligned_cols=111 Identities=25% Similarity=0.296 Sum_probs=92.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-++++|++++|++ . .|+++|++|++||+++|+|+||||||||+++|+|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999953 2 5999999999999999999999999999999999999999999986 1699
Q ss_pred EeecCccc-cccchhhhcCCCC-CC-CHHHHHHHHHHcCccHHHhhCccc
Q 017723 312 IIPQEPTL-FRGSVRTNLDPLG-MY-SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 312 ~V~Q~~~l-f~~Ti~eNi~~~~-~~-~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
|++|++.+ ++.|++||+.+.. .. .++.+.++++..++.+.....|..
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 453 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKD 453 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCccc
Confidence 99999875 5679999996531 12 244678899999998776655543
No 355
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=7.6e-17 Score=127.23 Aligned_cols=126 Identities=27% Similarity=0.396 Sum_probs=103.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe--ecCCCC----hhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL--DICSMG----LKD 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~--~i~~~~----~~~ 305 (367)
+|++++++|.|.. ..+|-||+|+.+.|+.+.+.||||+|||||++.|.=+--|.+|+..+-|. |.++.+ ...
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 5899999999953 34999999999999999999999999999999999999999999999774 333332 347
Q ss_pred hhhhceEeecCccccc-cchhhhcCCCC----CCCH----HHHHHHHHHcCccHHHhhCcccc
Q 017723 306 LRTKLSIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~-~Ti~eNi~~~~----~~~~----e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+|+++|+|+|..+|++ -|+-||+--.+ ..++ .+..+.++...|.++.+++|-.|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhl 142 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHL 142 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceec
Confidence 8999999999999975 59999983111 1222 35677889999999999998654
No 356
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.3e-16 Score=159.40 Aligned_cols=106 Identities=24% Similarity=0.365 Sum_probs=87.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999953 34999999999999999999999999999999999999999999999741 2699
Q ss_pred EeecCc--cccc-cchhhhcCC-CCCCCHHHHHHHHHHcCccH
Q 017723 312 IIPQEP--TLFR-GSVRTNLDP-LGMYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 312 ~V~Q~~--~lf~-~Ti~eNi~~-~~~~~~e~i~~al~~a~l~~ 350 (367)
|++|++ .+.. .|+.+++.. .....++++.++++..++..
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~ 421 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG 421 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh
Confidence 999985 3443 478888642 22234567888999988853
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.67 E-value=3.5e-17 Score=161.40 Aligned_cols=117 Identities=27% Similarity=0.350 Sum_probs=91.6
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEE-----------ECCeecCCCChh
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK 304 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~-----------~~g~~i~~~~~~ 304 (367)
++++++|.++. .+|++++ ++++|++++|+|+||||||||+++|+|+++|++|+|. ++|.++.++..+
T Consensus 77 ~~~~~~yg~~~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVNG-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCCc-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 45899996543 4899999 8999999999999999999999999999999999997 899988765322
Q ss_pred hh--hh----hceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCc
Q 017723 305 DL--RT----KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 305 ~~--r~----~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp 356 (367)
.. +. .+.+++|.|.+|.+|++||+... ...+++.++++..++.+..+..+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~~~ 210 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV--DERGKLDEVVERLGLENILDRDI 210 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh--hHHHHHHHHHHHcCCchhhcCCh
Confidence 11 12 24556667778899999999642 13467888999999876654443
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=2.3e-16 Score=131.62 Aligned_cols=68 Identities=31% Similarity=0.380 Sum_probs=60.8
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeec
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q 315 (367)
.|++++|.+ ..++++ ++++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~--~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 688999954 348888 49999999999999999999999999999999999999999953 789999
Q ss_pred Ccc
Q 017723 316 EPT 318 (367)
Q Consensus 316 ~~~ 318 (367)
++.
T Consensus 69 ~~~ 71 (177)
T cd03222 69 YID 71 (177)
T ss_pred cCC
Confidence 876
No 359
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.65 E-value=1.3e-16 Score=146.74 Aligned_cols=93 Identities=28% Similarity=0.412 Sum_probs=77.6
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc-chhhhcCCCC---CCC----H
Q 017723 265 VVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----D 336 (367)
Q Consensus 265 IvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~ 336 (367)
|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++||+|++.+|+. |++||+.++. ..+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987654 46789999999999975 9999997531 122 3
Q ss_pred HHHHHHHHHcCccHHHhhCcccc
Q 017723 337 NEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 337 e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+++.++++..++.++.+..|..|
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~L 101 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQL 101 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhC
Confidence 46788999999988877766543
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.8e-16 Score=155.40 Aligned_cols=62 Identities=31% Similarity=0.548 Sum_probs=58.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 296 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~ 296 (367)
|+++|++++|+. +.+|+|+||+|++|++++|||+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~ 63 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 789999999953 34999999999999999999999999999999999999999999999884
No 361
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=1.1e-15 Score=151.15 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=96.4
Q ss_pred ceEEEEeeEEEeCCC---CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC---CCceEEECCeecCCCChh
Q 017723 231 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLK 304 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~---~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p---~~G~I~~~g~~i~~~~~~ 304 (367)
..+.|+|+++.-+.. .+.+|+|||.+++|||.+||.||||||||||++.|+|..++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 468999999988544 35699999999999999999999999999999999999975 789999999 455778
Q ss_pred hhhhhceEeecCcccccc-chhhhcCCC------CCCC----HHHHHHHHHHcCccH
Q 017723 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPL------GMYS----DNEIWEAMEKCQLKA 350 (367)
Q Consensus 305 ~~r~~i~~V~Q~~~lf~~-Ti~eNi~~~------~~~~----~e~i~~al~~a~l~~ 350 (367)
.+++..+||+||..+++. ||+|++.+. .+.+ ++++++++++-+|.+
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~ 157 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK 157 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 899999999999998765 999998532 2222 346677777766653
No 362
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.63 E-value=3e-16 Score=168.25 Aligned_cols=83 Identities=27% Similarity=0.280 Sum_probs=73.3
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC----CCCCceEEECCeecCCCChhhhhhhceEeecCccccc-
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR- 321 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~----~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~- 321 (367)
+.+|+|+|+++++||.++|+||||||||||+++|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|++.+++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 34899999999999999999999999999999999986 578999999999886654 346778999999988776
Q ss_pred cchhhhcCC
Q 017723 322 GSVRTNLDP 330 (367)
Q Consensus 322 ~Ti~eNi~~ 330 (367)
-|++||+.+
T Consensus 153 lTV~E~l~f 161 (1394)
T TIGR00956 153 LTVGETLDF 161 (1394)
T ss_pred CCHHHHHHH
Confidence 599999964
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.60 E-value=2.8e-15 Score=144.39 Aligned_cols=86 Identities=31% Similarity=0.525 Sum_probs=77.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|+ + +.+++|+|+++.+|++++|||++|||||||+++|.|...|++|+|...+. -.++
T Consensus 3 ~i~~~~ls~~~g-~-~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYG-D-RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeC-C-ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 489999999994 3 44999999999999999999999999999999999999999999998752 1699
Q ss_pred EeecCcccccc-chhhhcCC
Q 017723 312 IIPQEPTLFRG-SVRTNLDP 330 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~ 330 (367)
|++|++.+.+. |+.+.+..
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred EeCCCCCcCCCccHHHHHHh
Confidence 99999999966 99998854
No 364
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.58 E-value=4.8e-15 Score=148.48 Aligned_cols=62 Identities=27% Similarity=0.449 Sum_probs=58.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
-|+++|++++|+. ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 3889999999964 3499999999999999999999999999999999999999999999987
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.57 E-value=3.2e-15 Score=160.16 Aligned_cols=81 Identities=27% Similarity=0.331 Sum_probs=72.9
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCChhhhhhhceEeecCccccc-c
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-G 322 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~-~ 322 (367)
..+|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 34899999999999999999999999999999999999998 999999999987654 3678999999987765 5
Q ss_pred chhhhcCC
Q 017723 323 SVRTNLDP 330 (367)
Q Consensus 323 Ti~eNi~~ 330 (367)
|++||+.+
T Consensus 255 TV~EtL~f 262 (1470)
T PLN03140 255 TVKETLDF 262 (1470)
T ss_pred cHHHHHHH
Confidence 99999964
No 366
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.57 E-value=1e-14 Score=131.30 Aligned_cols=127 Identities=24% Similarity=0.415 Sum_probs=99.4
Q ss_pred eEEEEeeEEEeC--CCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-----CCceEEECCeecCCCChh
Q 017723 232 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~--~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-----~~G~I~~~g~~i~~~~~~ 304 (367)
-+.++|++..|. .....++++|||+|++||++|+||+||||||--++.++|+++- .+|+|.++|.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 378899887773 3445699999999999999999999999999999999999965 469999999999999988
Q ss_pred hhhh----hceEeecCccc-cc--cchhhhc----CC----CCCCCHHHHHHHHHHcCccHH---HhhCccc
Q 017723 305 DLRT----KLSIIPQEPTL-FR--GSVRTNL----DP----LGMYSDNEIWEAMEKCQLKAT---ISRLPML 358 (367)
Q Consensus 305 ~~r~----~i~~V~Q~~~l-f~--~Ti~eNi----~~----~~~~~~e~i~~al~~a~l~~~---i~~lp~g 358 (367)
.+|. .|++++|||.- .| -||..-| .. ....-.+++.+.++.+++.+- ++..|+.
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcc
Confidence 7765 69999999972 11 1444443 22 223456788999999998774 4445543
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.56 E-value=4.7e-14 Score=136.06 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=91.6
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
.-++++|+++.|+++ +.+++++||.|++|+++|||||+|+|||||+++|+|...|.+|+|.++-. + .+
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------KI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------EE
Confidence 359999999999655 56999999999999999999999999999999999999999999998642 2 79
Q ss_pred eEeecCcc-cc-ccchhhhcCCCC-CCCHHHHHHHHHHcCccHHH
Q 017723 311 SIIPQEPT-LF-RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 311 ~~V~Q~~~-lf-~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i 352 (367)
||.+|+-. ++ +.|+.|++.-.. +..+.+++..|...++...-
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~ 432 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED 432 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH
Confidence 99999983 43 448888886432 33478899999988876543
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=4.4e-15 Score=118.81 Aligned_cols=85 Identities=27% Similarity=0.499 Sum_probs=72.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC-----eecCCCChhh-
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-----LDICSMGLKD- 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g-----~~i~~~~~~~- 305 (367)
-+.++++|-.|.+.. .-+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.+.- .++-.++..+
T Consensus 6 LL~V~~lsk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 478899999996543 78999999999999999999999999999999999999999999965 3444555444
Q ss_pred ---hhhhceEeecCcc
Q 017723 306 ---LRTKLSIIPQEPT 318 (367)
Q Consensus 306 ---~r~~i~~V~Q~~~ 318 (367)
.|...++|.|+|.
T Consensus 84 R~L~RTeWG~VhQnP~ 99 (258)
T COG4107 84 RRLLRTEWGFVHQNPR 99 (258)
T ss_pred HHHhhhccceeecCcc
Confidence 3556899999996
No 369
>PLN03073 ABC transporter F family; Provisional
Probab=99.52 E-value=2.2e-14 Score=144.19 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=73.9
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC---CCCCceEEECCeecCCC--Ch--
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV---EPENGRILIDGLDICSM--GL-- 303 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~---~p~~G~I~~~g~~i~~~--~~-- 303 (367)
..|+++|++|+|++ . .+|+|+||+|++|++++|||+||||||||+++|+|.. .|++|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~~-~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGG-R-DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCC-C-EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 45999999999963 2 3999999999999999999999999999999999864 58899998755543211 11
Q ss_pred ----------hhhhhhceEeecCccccccchhhhc
Q 017723 304 ----------KDLRTKLSIIPQEPTLFRGSVRTNL 328 (367)
Q Consensus 304 ----------~~~r~~i~~V~Q~~~lf~~Ti~eNi 328 (367)
..+++.+++++|+|.+...+..+|.
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~ 288 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKG 288 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1235568899998876544554443
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=3.3e-14 Score=113.36 Aligned_cols=86 Identities=23% Similarity=0.427 Sum_probs=67.1
Q ss_pred EEEEeeEEEe--C--CC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC----eecCCCCh
Q 017723 233 IELEDLKVRY--R--PN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG----LDICSMGL 303 (367)
Q Consensus 233 I~~~nvsf~Y--~--~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g----~~i~~~~~ 303 (367)
+.++||+-++ . ++ .-++++++||+++.||++++=|+|||||||+++.|-+-|.|++|+|.+.- .|+-..++
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 6677775444 2 11 23599999999999999999999999999999999999999999999842 34444443
Q ss_pred h----hhhhhceEeecCcc
Q 017723 304 K----DLRTKLSIIPQEPT 318 (367)
Q Consensus 304 ~----~~r~~i~~V~Q~~~ 318 (367)
. ..|+.||||+|--.
T Consensus 85 r~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 3 34667999999543
No 371
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.48 E-value=8e-14 Score=116.23 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=50.0
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeec
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q 315 (367)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH
Confidence 35899999999999999999999999999999996 368999998752 121 2446889888
No 372
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=2.8e-14 Score=122.30 Aligned_cols=66 Identities=23% Similarity=0.457 Sum_probs=57.4
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEee
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~ 314 (367)
++.+||||+||||+.++++|++|+||||.+|+|.|+..|++|.|.++|.+-.+ +.+++-+++++|+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~ 103 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVM 103 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999987655 4455555665553
No 373
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.41 E-value=4.1e-13 Score=138.60 Aligned_cols=123 Identities=24% Similarity=0.374 Sum_probs=103.9
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC-Chhhhhhh
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTK 309 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~-~~~~~r~~ 309 (367)
..+..+|++..|+.... +.+++|+.+++||+.++-|++||||||.++++.|..+|++|++.++|.++..- +.+..|++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999975544 99999999999999999999999999999999999999999999999999865 44469999
Q ss_pred ceEeecCcccccc-chhhhcCCC---CCCC----HHHHHHHHHHcCccHHHhh
Q 017723 310 LSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi~~~---~~~~----~e~i~~al~~a~l~~~i~~ 354 (367)
+||+||+..|++. |.||.+.+. +... .+.+++.|+..++.+....
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~ 694 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK 694 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc
Confidence 9999999998866 999998542 1112 2457888888888877654
No 374
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.38 E-value=3.6e-13 Score=125.77 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=58.4
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc-eEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
.+|+++|+++++||.++|+||||||||||++ .|+.+|++| +|.+||.++...+...++..= +|+|+..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~fn 88 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGFN 88 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhhh
Confidence 4899999999999999999999999999999 788888888 799999999887665443332 8999863
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.36 E-value=5.5e-13 Score=124.31 Aligned_cols=115 Identities=21% Similarity=0.298 Sum_probs=91.9
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
+-|.++||+|.|+++. .+++++||-|..++++|+|||+|+|||||+|++.|...|..|.|.-.-+. .+
T Consensus 388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 3599999999997665 69999999999999999999999999999999999999999998765432 23
Q ss_pred eEeecC---ccccccchhhhcCC-CC-CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 311 SIIPQE---PTLFRGSVRTNLDP-LG-MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 311 ~~V~Q~---~~lf~~Ti~eNi~~-~~-~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++-.|+ ---++.|..|++.. .. +-+.++++..+..++|.-..+..|.
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~ 507 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM 507 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch
Confidence 333443 33567788888743 22 3567899999999999977666554
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.34 E-value=1.6e-12 Score=104.30 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=96.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
++++||+.. + -|-.+|.++.+||.+-+|||+|||||||+--++|+. |-+|+|.++|.++..++..++-++=+|
T Consensus 4 ~qln~v~~~----t--RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAES----T--RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeecccccc----c--cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 667777542 2 477899999999999999999999999999999997 568999999999999999999999999
Q ss_pred eecCcc-ccccchhhhcCCCCCC--CHHHHHHHHHHcCccHHHhh
Q 017723 313 IPQEPT-LFRGSVRTNLDPLGMY--SDNEIWEAMEKCQLKATISR 354 (367)
Q Consensus 313 V~Q~~~-lf~~Ti~eNi~~~~~~--~~e~i~~al~~a~l~~~i~~ 354 (367)
..|+.. .|..-+..-+++..++ -.+++.++|.+.+++|.+.+
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~R 121 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGR 121 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhh
Confidence 887654 7888888888776433 34578889999988886543
No 377
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=1.2e-11 Score=126.50 Aligned_cols=118 Identities=25% Similarity=0.276 Sum_probs=88.9
Q ss_pred EEEEeeEEEe--CCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC--CCCceEEECCeecCCCChhhhhh
Q 017723 233 IELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--PENGRILIDGLDICSMGLKDLRT 308 (367)
Q Consensus 233 I~~~nvsf~Y--~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~--p~~G~I~~~g~~i~~~~~~~~r~ 308 (367)
..++|+.|.- ..+++.+|+|++=-++||..+|++|+||||||||++.|+|--. .-+|+|++||.+..+ +..++
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R 864 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFAR 864 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcc
Confidence 3344444432 2345669999999999999999999999999999999997642 346999999998765 78889
Q ss_pred hceEeec-CccccccchhhhcCC------CCCCCHH----HHHHHHHHcCccHHHh
Q 017723 309 KLSIIPQ-EPTLFRGSVRTNLDP------LGMYSDN----EIWEAMEKCQLKATIS 353 (367)
Q Consensus 309 ~i~~V~Q-~~~lf~~Ti~eNi~~------~~~~~~e----~i~~al~~a~l~~~i~ 353 (367)
.+|||.| |.|+-.-||||-+.+ ..+.+++ -++++++..+|.+.-+
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~d 920 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD 920 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhh
Confidence 9999998 557888899999853 2234433 3667777777765433
No 378
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.30 E-value=1.3e-12 Score=111.51 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=55.9
Q ss_pred eeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC---------CceEEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---------NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 251 ~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~---------~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
+++++++++| .++|+||||||||||+++|.++.+|. .|++.++|.+... ...+.++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc
Confidence 6789999999 99999999999999999999998665 3478888877654 22467899999999887
No 379
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.22 E-value=3e-11 Score=99.59 Aligned_cols=69 Identities=25% Similarity=0.351 Sum_probs=62.2
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~ 299 (367)
...|+++++.|+|+..+ |++-|+|+++|+|...-+||.+|||||||+++|.|-.-.-.|.|.++|.+--
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaF 79 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAF 79 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcc
Confidence 34799999999998666 4999999999999999999999999999999999988888899999997543
No 380
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.20 E-value=7.7e-11 Score=108.57 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=65.3
Q ss_pred hhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEEeCCCCCccee-----------eeeeEecCCcEEEE
Q 017723 197 NIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK-----------GITCTFKEGTRVGV 265 (367)
Q Consensus 197 ~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~L~-----------~isl~i~~G~~vaI 265 (367)
...+.+|++++++.++... . .+. ...+.+.|+||+|.||... ++|+ |+++.|.+|++++|
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~-----~-~~e--~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNG-----D-DPE--KAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred ccccHhHHHHHhCCCccCC-----C-Ccc--ccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 4467899999998654311 1 111 1345799999999997654 6897 99999999999999
Q ss_pred EcCCCCCHHHHHHHHHcCCCCC
Q 017723 266 VGRTGSGKTTLISALFRLVEPE 287 (367)
Q Consensus 266 vG~SGsGKSTl~~ll~g~~~p~ 287 (367)
||++|||||||++++.+.+...
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred ECCCCCChhHHHHHHHHhhccc
Confidence 9999999999999999998654
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.12 E-value=4.5e-10 Score=104.42 Aligned_cols=100 Identities=29% Similarity=0.515 Sum_probs=86.9
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeec-CCCChhhhhh
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI-CSMGLKDLRT 308 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i-~~~~~~~~r~ 308 (367)
..-++++|++..=+. ....++++||++++||.++|.|-+|-|-+-|+.+|+|+.+|.+|+|.++|+++ ..+++..+|+
T Consensus 255 ~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 255 EVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 345899999886432 23489999999999999999999999999999999999999999999999997 6778887766
Q ss_pred h-ceEeecCcc----ccccchhhhcCC
Q 017723 309 K-LSIIPQEPT----LFRGSVRTNLDP 330 (367)
Q Consensus 309 ~-i~~V~Q~~~----lf~~Ti~eNi~~ 330 (367)
. ++|||.|-+ ..+.|+.||+.+
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL 360 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVL 360 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhh
Confidence 5 999999986 678899999854
No 382
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.4e-10 Score=105.81 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=81.6
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
+-+-++||+|.||... +.+++++|-|.--+.+|||||+|.|||||++||.|-++|++|+..=| .|-+|
T Consensus 585 PvLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred CeeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 3578999999997665 49999999999999999999999999999999999999999988654 23467
Q ss_pred eEeecCcc--c-cccchhhhcCCCCCCCHHHHHHHHHHcCccH
Q 017723 311 SIIPQEPT--L-FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 311 ~~V~Q~~~--l-f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~ 350 (367)
|.--|... | -..|-.|-+.-..+.+.++.+++|-.-+|..
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~s 695 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLAS 695 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhh
Confidence 77777543 1 2234444443223556777777777666654
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.07 E-value=1.3e-10 Score=100.76 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=73.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEec-CCcEEEEEcCCCCCHHHHHHHHH-cCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFK-EGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~-~G~~vaIvG~SGsGKSTl~~ll~-g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
.|+++|+. +|... .+++|+.. +|+.++|+|+||||||||+++|. .+|.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 68999987 77432 46677654 59999999999999999999999 4676666666654 22334455566778
Q ss_pred ceEeecCccccccchhhhcCCCCCCCHHHHHHH--HHHcCccHHHhhCc
Q 017723 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEA--MEKCQLKATISRLP 356 (367)
Q Consensus 310 i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~a--l~~a~l~~~i~~lp 356 (367)
+++++|++.- ...+.... ..+.++..+. ++..++.+++..-+
T Consensus 78 v~~~f~~~~~----~~~~~r~~-gl~~~~~~~~~~l~~g~l~~~l~~~~ 121 (213)
T cd03279 78 VSFTFQLGGK----KYRVERSR-GLDYDQFTRIVLLPQGEFDRFLARPV 121 (213)
T ss_pred EEEEEEECCe----EEEEEEec-CCCHHHHHHhhhhhhcchHHHhcCCc
Confidence 9999999843 22222221 2344444432 34444555554433
No 384
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.06 E-value=1.8e-10 Score=99.23 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=65.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC------------CCCceEEECCeecCCCChhhhhhhceEeecCccccccchh
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~------------p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~ 325 (367)
++|+.++|+|+||||||||+++|++.++ |..|+ ++|.++..++.+.+++.+ .|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 88898 699999989988888864 578889999998
Q ss_pred hhcCCCCCCCHHHHHHHHHH
Q 017723 326 TNLDPLGMYSDNEIWEAMEK 345 (367)
Q Consensus 326 eNi~~~~~~~~e~i~~al~~ 345 (367)
+|. ++ .+.+.+.++++.
T Consensus 78 ~~~-y~--~~~~~i~~~l~~ 94 (205)
T PRK00300 78 GNY-YG--TPRSPVEEALAA 94 (205)
T ss_pred Ccc-cc--CcHHHHHHHHHc
Confidence 884 22 245566666543
No 385
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.04 E-value=4.6e-10 Score=105.50 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=71.2
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEEC---CeecCCCChhhh-
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID---GLDICSMGLKDL- 306 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~---g~~i~~~~~~~~- 306 (367)
+.++.++++..|... ..+++.++ ++.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 138 PAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 458999999999644 44898886 999999999999999999999999999999999999885 577766554433
Q ss_pred ---hhhceEeecCcc
Q 017723 307 ---RTKLSIIPQEPT 318 (367)
Q Consensus 307 ---r~~i~~V~Q~~~ 318 (367)
++.+++|+|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 357999999644
No 386
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.03 E-value=2.6e-10 Score=101.00 Aligned_cols=101 Identities=21% Similarity=0.334 Sum_probs=62.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC----------------CCCCCc------
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL----------------VEPENG------ 289 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~----------------~~p~~G------ 289 (367)
.|+++|. -+|.. ..++++++ |++++|+||||||||||+++|.++ ..+.+|
T Consensus 3 ~i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 4677763 13532 23777776 899999999999999999999844 344444
Q ss_pred --eEEECCeecCC-C--ChhhhhhhceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccH
Q 017723 290 --RILIDGLDICS-M--GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 290 --~I~~~g~~i~~-~--~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~ 350 (367)
+|.+++.+-.. + ....+++.+++++|++.+++. ..+.++++.+++.+++.+
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~----------~~t~~ei~~~l~~~gl~~ 130 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK----------NVTKNDVMNLLESAGFSR 130 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe----------EcCHHHHHHHHHHcCCCC
Confidence 45554422110 0 122345567777766655431 245677777777776653
No 387
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.00 E-value=5.8e-10 Score=99.19 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC-hhhhhhhceEeecCccccccchhhh
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLSIIPQEPTLFRGSVRTN 327 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~r~~i~~V~Q~~~lf~~Ti~eN 327 (367)
+.++|+|++|||||||++.|+|+++|.+|+|.++|.++..++ ..++...++++||+..--..++.+|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 689999999999999999999999999999999999998775 5688888999999764434456665
No 388
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.95 E-value=1.5e-09 Score=98.64 Aligned_cols=95 Identities=23% Similarity=0.386 Sum_probs=64.6
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC--------CCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--------VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~--------~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
.+|+|+||+|+||+.++|||.|||||||++++++|. |.|++|.|.+--..+.-+-+.++ ||.+
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~---------Ep~f 467 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEY---------EPEF 467 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCccc---------cccc
Confidence 689999999999999999999999999999999986 68999999875433322222211 3333
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCccHHH
Q 017723 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 352 (367)
Q Consensus 320 f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i 352 (367)
=..||.|-+. ...-+-.--.++++.+++.|-+
T Consensus 468 ~~~tilehl~-s~tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 468 GEVTILEHLR-SKTGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred CchhHHHHHh-hccCchhHHHHHHHhhccchhh
Confidence 3446666552 1111222345577777776654
No 389
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.94 E-value=9.8e-10 Score=97.74 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC-CceEEECCe-ecCCCC--hhhhhhhceEeecCccc----------cccchh
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGL-DICSMG--LKDLRTKLSIIPQEPTL----------FRGSVR 325 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~-~G~I~~~g~-~i~~~~--~~~~r~~i~~V~Q~~~l----------f~~Ti~ 325 (367)
...++|||+||||||||+++|.+++.|+ .|++...|. ++-... ....+..+++++|++.. ..-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 468888776 432111 11234589999999632 145788
Q ss_pred hhcCCCC---------CCCHHHHHHHHHHcCcc
Q 017723 326 TNLDPLG---------MYSDNEIWEAMEKCQLK 349 (367)
Q Consensus 326 eNi~~~~---------~~~~e~i~~al~~a~l~ 349 (367)
+|+..+. ....+++.++++.+++.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~ 137 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLN 137 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCC
Confidence 8874321 23457899999999885
No 390
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.93 E-value=1.1e-09 Score=92.78 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=66.5
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc--c-ccchh
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL--F-RGSVR 325 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l--f-~~Ti~ 325 (367)
..+-+.+.+++|+.++|+|++||||||+++.|+++++|+.|.|.+.+..-..++ .+..++++.|.... + ..|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455677889999999999999999999999999999999999999774433332 23456676665532 2 24666
Q ss_pred hhcCC----------CCCCCHHHHHHHHHHc
Q 017723 326 TNLDP----------LGMYSDNEIWEAMEKC 346 (367)
Q Consensus 326 eNi~~----------~~~~~~e~i~~al~~a 346 (367)
+++.. -++..+++.+.+++.+
T Consensus 91 ~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred HHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 66521 1234555566666654
No 391
>PRK01889 GTPase RsgA; Reviewed
Probab=98.89 E-value=1.5e-09 Score=101.05 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=76.5
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi 328 (367)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|..++..-.. ...++++.+++|+..+|+..-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4677777889999999999999999999999999999999999998754333 2345689999999999988777776
Q ss_pred CCCCC-----CCHHHHHHHHHHcCccH
Q 017723 329 DPLGM-----YSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 329 ~~~~~-----~~~e~i~~al~~a~l~~ 350 (367)
.+... ..-.++.+.++.|.+.+
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~ 287 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRD 287 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCC
Confidence 54321 11245666666666553
No 392
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.89 E-value=1.1e-09 Score=95.61 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=29.4
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHH
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLI 277 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~ 277 (367)
..+|+++||++++||+++|+|+||||||||+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3499999999999999999999999999996
No 393
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.89 E-value=1.1e-09 Score=97.09 Aligned_cols=103 Identities=23% Similarity=0.262 Sum_probs=65.9
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH-----c-CC----CCCCc-----------eEEECCeecCCCChhh--
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-----R-LV----EPENG-----------RILIDGLDICSMGLKD-- 305 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~-----g-~~----~p~~G-----------~I~~~g~~i~~~~~~~-- 305 (367)
-|+|++++||.|..++|+|.||||||||++-++ + +. .|..+ -|.+|..++..-++..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998663 1 22 13222 3666666655433221
Q ss_pred --------hhh----------------hceEeecCcc-ccccchhhhcCCCCC-CCHHHHHHHHHHcCccHH
Q 017723 306 --------LRT----------------KLSIIPQEPT-LFRGSVRTNLDPLGM-YSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 306 --------~r~----------------~i~~V~Q~~~-lf~~Ti~eNi~~~~~-~~~e~i~~al~~a~l~~~ 351 (367)
+|+ .+.|..++.. +.+.|+.||+.+... ...++..++++.+++.+.
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh
Confidence 111 1334444444 346688888765422 233567778888888663
No 394
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.88 E-value=2.2e-09 Score=89.00 Aligned_cols=107 Identities=22% Similarity=0.361 Sum_probs=80.6
Q ss_pred CCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC----CCCceEEECCeecCCCChhhhhh----hceEeec
Q 017723 244 PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKDLRT----KLSIIPQ 315 (367)
Q Consensus 244 ~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~----p~~G~I~~~g~~i~~~~~~~~r~----~i~~V~Q 315 (367)
.+.-.+++++|++.+.||.-++||+||||||-+++.++|..+ .+.-...+|+.++-+++++..|+ +|++++|
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 344458999999999999999999999999999999999875 34466778888999999888776 4678999
Q ss_pred Ccccccc---c----hhhhcC---CCC------CCCHHHHHHHHHHcCccH
Q 017723 316 EPTLFRG---S----VRTNLD---PLG------MYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 316 ~~~lf~~---T----i~eNi~---~~~------~~~~e~i~~al~~a~l~~ 350 (367)
||.-.-+ + +-+||- +-+ .-...+..+.+.++|+.|
T Consensus 97 eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKd 147 (330)
T COG4170 97 EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhcccc
Confidence 9984322 2 445662 110 013456677888888865
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.85 E-value=2.4e-09 Score=91.96 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=55.2
Q ss_pred eeeEecCCcEEEEEcCCCCCHHHHHHHHH----cCCCCCCceEEECCeecCCCChhhhhhhceEeecCc-----ccccc-
Q 017723 253 ITCTFKEGTRVGVVGRTGSGKTTLISALF----RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-----TLFRG- 322 (367)
Q Consensus 253 isl~i~~G~~vaIvG~SGsGKSTl~~ll~----g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~-----~lf~~- 322 (367)
.++++.+| +++|+|+||||||||++.|. |...|..|.+..+... +.....+..+++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~---i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKL---IREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHH---HhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 9988888877622222 22234567899999998 33332
Q ss_pred chhhhcCCC
Q 017723 323 SVRTNLDPL 331 (367)
Q Consensus 323 Ti~eNi~~~ 331 (367)
|+.||+.+.
T Consensus 92 ~~~~~~~~~ 100 (204)
T cd03240 92 AILENVIFC 100 (204)
T ss_pred hHhhceeee
Confidence 899998653
No 396
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.83 E-value=4.9e-09 Score=99.30 Aligned_cols=67 Identities=22% Similarity=0.453 Sum_probs=58.2
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEEC---CeecCC-----CChhhhhhhceEeec
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID---GLDICS-----MGLKDLRTKLSIIPQ 315 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~---g~~i~~-----~~~~~~r~~i~~V~Q 315 (367)
.+++++ +++++|++++|+|+||+|||||+++|+|+++|+.|.|.+. |.++.+ ++.+.+++.+.+|.+
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 489999 9999999999999999999999999999999999999995 444553 455668889999965
No 397
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.81 E-value=1.4e-08 Score=96.31 Aligned_cols=94 Identities=22% Similarity=0.438 Sum_probs=80.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh-hhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 310 (367)
-++++|++.. ..++|+||++++||.++|.|--|||+|=+++.|.|.-++.+|+|.+||.++.--++. .++.-|
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 3667776531 158999999999999999999999999999999999999999999999988877655 778889
Q ss_pred eEeecCcc----ccccchhhhcCCC
Q 017723 311 SIIPQEPT----LFRGSVRTNLDPL 331 (367)
Q Consensus 311 ~~V~Q~~~----lf~~Ti~eNi~~~ 331 (367)
+|||-|-. +...+|++||++.
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~ 361 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLA 361 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehH
Confidence 99998654 5677999999753
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.80 E-value=3.5e-09 Score=90.50 Aligned_cols=84 Identities=21% Similarity=0.213 Sum_probs=57.0
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccc-ccchhh
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRT 326 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf-~~Ti~e 326 (367)
++++|++++. |+.++|+||||||||||++.|.+..- +...|.++... .+++|...+| ..|++|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 4777776665 79999999999999999999987442 22366555321 3667755554 558999
Q ss_pred hcCCCCCC---CHHHHHHHHHHcC
Q 017723 327 NLDPLGMY---SDNEIWEAMEKCQ 347 (367)
Q Consensus 327 Ni~~~~~~---~~e~i~~al~~a~ 347 (367)
|+..+... ..+++.++++.++
T Consensus 79 ~l~~~~s~~~~e~~~~~~iL~~~~ 102 (199)
T cd03283 79 DLRDGISYFYAELRRLKEIVEKAK 102 (199)
T ss_pred ccccccChHHHHHHHHHHHHHhcc
Confidence 99754321 2245666777665
No 399
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.78 E-value=4.2e-09 Score=99.09 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=62.5
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc---eEEECCeecCCCChhhh------hhhceEeecCcc
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG---RILIDGLDICSMGLKDL------RTKLSIIPQEPT 318 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G---~I~~~g~~i~~~~~~~~------r~~i~~V~Q~~~ 318 (367)
.+++++ +++.+|++++|+|+||+|||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 489999 99999999999999999999999999999999864 33345555555443433 557999999987
Q ss_pred ccc-cchhhhc
Q 017723 319 LFR-GSVRTNL 328 (367)
Q Consensus 319 lf~-~Ti~eNi 328 (367)
.+. -++.+|.
T Consensus 223 ~~~rl~a~e~a 233 (434)
T PRK07196 223 PLMRIKATELC 233 (434)
T ss_pred hhhhHHHHHHH
Confidence 663 3666665
No 400
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.78 E-value=7.3e-09 Score=87.77 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
|+.++|+||||||||||+++|.+.+.| .+.+++..+........++.+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888888888777777778899998883
No 401
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.76 E-value=1.7e-08 Score=93.72 Aligned_cols=87 Identities=26% Similarity=0.298 Sum_probs=64.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCC---CCceEEECCeecCCCChhhhhhhceEeecCcc-----ccccchhhhcC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-----LFRGSVRTNLD 329 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p---~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~-----lf~~Ti~eNi~ 329 (367)
++|..++|+||+||||||+++.|++.+.+ ..+.|.....++ ++..+.++...++|+|... -|..++++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999843 234676666666 4777777777788888643 58888998886
Q ss_pred CCC------CC-CHHHHHHHHHH
Q 017723 330 PLG------MY-SDNEIWEAMEK 345 (367)
Q Consensus 330 ~~~------~~-~~e~i~~al~~ 345 (367)
..+ +. +.|.++.|++.
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHH
Confidence 432 33 44456678877
No 402
>PRK08149 ATP synthase SpaL; Validated
Probab=98.74 E-value=1e-08 Score=96.30 Aligned_cols=69 Identities=23% Similarity=0.333 Sum_probs=60.6
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC---ceEEECCeecCCCChhhhh----hhceEeecCc
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLR----TKLSIIPQEP 317 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~---G~I~~~g~~i~~~~~~~~r----~~i~~V~Q~~ 317 (367)
.+++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|-.+|.++.++..+..+ +++++|....
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 489999 9999999999999999999999999999999988 9999999999888766654 6677776543
No 403
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.72 E-value=5e-09 Score=90.48 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=55.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhh-hhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 310 (367)
.|+++|.- +|.. ..+++++++ +.++|+|||||||||++++|. .++|.+.. ..| +++
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhH
Confidence 57888864 6742 348898887 899999999999999999997 33454332 223 579
Q ss_pred eEeecCcccccc-chhhhcC
Q 017723 311 SIIPQEPTLFRG-SVRTNLD 329 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~ 329 (367)
++++|+..+++. |.++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~ 81 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEV 81 (212)
T ss_pred HHHhcCCCCCCCCceEEEEE
Confidence 999999877654 6666654
No 404
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=2.9e-08 Score=102.38 Aligned_cols=117 Identities=24% Similarity=0.237 Sum_probs=85.9
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCChhhhhhhceEeecCc-ccccc
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFRG 322 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~-~lf~~ 322 (367)
..+|+|++.-++||+.+-+.||.|||||||++.|.|-.+.. .|+|.+||++.++..+ ++.++|.+|+. |+-.-
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 35999999999999999999999999999999999877543 4699999999999877 77899998854 56677
Q ss_pred chhhhcCCC-------CCCC-HHHHHHHHHHcCccHHHhhCccccCCcCCCC
Q 017723 323 SVRTNLDPL-------GMYS-DNEIWEAMEKCQLKATISRLPMLLDSSGNSK 366 (367)
Q Consensus 323 Ti~eNi~~~-------~~~~-~e~i~~al~~a~l~~~i~~lp~gldt~i~e~ 366 (367)
|+||-+.+. ..++ -++-++.+..+.-.=-+-.|....||.+|.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd 256 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGND 256 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceeccc
Confidence 999998642 1122 1122222111111112346777899999865
No 405
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.67 E-value=3.4e-08 Score=84.48 Aligned_cols=82 Identities=26% Similarity=0.263 Sum_probs=57.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-CceEEECCeecCCCChhhhhhhceEeec-----CccccccchhhhcCCCCCC-
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQ-----EPTLFRGSVRTNLDPLGMY- 334 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~V~Q-----~~~lf~~Ti~eNi~~~~~~- 334 (367)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +... ....++.| ++.-|...++.++....+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQREVGLDTLSFENALKAALRQDPDVI 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---CccceeeecccCCCccCHHHHHHHHhcCCcCEE
Confidence 58899999999999999999988754 678777665653 2222 23345666 5667888999998754332
Q ss_pred ------CHHHHHHHHHHcC
Q 017723 335 ------SDNEIWEAMEKCQ 347 (367)
Q Consensus 335 ------~~e~i~~al~~a~ 347 (367)
+++.++.+++.+.
T Consensus 79 i~gEird~e~~~~~l~~a~ 97 (198)
T cd01131 79 LVGEMRDLETIRLALTAAE 97 (198)
T ss_pred EEcCCCCHHHHHHHHHHHH
Confidence 6666777777654
No 406
>PLN02796 D-glycerate 3-kinase
Probab=98.63 E-value=1.1e-08 Score=92.99 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.7
Q ss_pred CcceeeeeeEe---cCCcE-----EEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCChhhhhh
Q 017723 247 PLVLKGITCTF---KEGTR-----VGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT 308 (367)
Q Consensus 247 ~~~L~~isl~i---~~G~~-----vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~ 308 (367)
..++++++..+ ++|+. ++|+|+||||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 34889999988 67877 9999999999999999999999875 588999999887766666655
No 407
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.61 E-value=7.7e-08 Score=80.98 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE-----------CCeecCCCChhhhh-----hhceEeecCccccccc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-----------DGLDICSMGLKDLR-----TKLSIIPQEPTLFRGS 323 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~-----------~g~~i~~~~~~~~r-----~~i~~V~Q~~~lf~~T 323 (367)
|+.++|+|+|||||||+++.|++.+.+. |.+.+ +|.+....+.+... +.+..+.|.+.++.|+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999987654 55544 66677666666653 3488999987777664
No 408
>PRK15494 era GTPase Era; Provisional
Probab=98.60 E-value=3.3e-08 Score=91.62 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=49.9
Q ss_pred CcceEEEEeeEEEeCCCCCcceeeeeeEecCCc-------EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGT-------RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 229 ~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~-------~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
..+.+++++++|+|| ..+.+++.+++++++|+ +++|+|++|+|||||++.|.|--
T Consensus 15 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 15 FKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 467899999999998 55669999999999999 99999999999999999998753
No 409
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.60 E-value=4.2e-08 Score=89.74 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=47.0
Q ss_pred eeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeec
Q 017723 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (367)
Q Consensus 253 isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q 315 (367)
+++.+++|+.+.|+|++||||||+++.|+++++|..|.+.++ +..++.... +..+.++.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~ 196 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYS 196 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEec
Confidence 557788999999999999999999999999999999999886 344444332 344555443
No 410
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.59 E-value=3.4e-08 Score=85.17 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=27.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
|+|+.++|+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 411
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.59 E-value=3.9e-08 Score=92.79 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=73.9
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCceEEE---CCeecCCCChhhhh---hhceEe-----ec
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILI---DGLDICSMGLKDLR---TKLSII-----PQ 315 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-~~G~I~~---~g~~i~~~~~~~~r---~~i~~V-----~Q 315 (367)
.+++++ +++.+|++++|+|+||+|||||++.|+|..++ ..|.|.+ .|.++.++..+.++ .+.++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 378887 99999999999999999999999999999844 4466766 55777777666554 235566 99
Q ss_pred Ccc------ccccchhhhcCCC-CC-----CCHHHHHHHHHHcCcc
Q 017723 316 EPT------LFRGSVRTNLDPL-GM-----YSDNEIWEAMEKCQLK 349 (367)
Q Consensus 316 ~~~------lf~~Ti~eNi~~~-~~-----~~~e~i~~al~~a~l~ 349 (367)
+|. ....+|.|.+... .+ .+..++.+|++.+++.
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 774 2344577766422 12 2456888999999884
No 412
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.58 E-value=7.3e-08 Score=81.20 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=52.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC------------CCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhh
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~------------p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eN 327 (367)
|+.++|+|||||||||+++.|++.++ |..|+ .+|.+..-++.+.+.+.+ .++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 33344 355555555555555553 46667777777666
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 017723 328 LDPLGMYSDNEIWEAMEK 345 (367)
Q Consensus 328 i~~~~~~~~e~i~~al~~ 345 (367)
. ++ .+.+.+++++++
T Consensus 76 ~-y~--~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG--TPKSPVEEALAA 90 (180)
T ss_pred e-eC--CcHHHHHHHHHC
Confidence 4 22 345556666554
No 413
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.58 E-value=7.2e-08 Score=80.69 Aligned_cols=64 Identities=23% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhh-hceEeecCcc-ccccchhhhc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KLSIIPQEPT-LFRGSVRTNL 328 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~-~i~~V~Q~~~-lf~~Ti~eNi 328 (367)
+|+.++|+|+|||||||+++.|.+++.| +.++|.++.. ...+|+ ..++.+|+.. +...+..+|+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~ 67 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDA 67 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 5999999999999999999999999987 5889988743 223333 3456666533 2233444444
No 414
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.3e-07 Score=88.58 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=91.2
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
.+.+++.+|+|.|+|++++.+.++++.++.-+++++||++|+||||+++++.+-..|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999988876799999999999999999999999999999999999999999998876 457
Q ss_pred ceEeecCcccc-ccchhhh--c-CCCCCCCHHHHHHHHHHcCccHHHhhCc
Q 017723 310 LSIIPQEPTLF-RGSVRTN--L-DPLGMYSDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 310 i~~V~Q~~~lf-~~Ti~eN--i-~~~~~~~~e~i~~al~~a~l~~~i~~lp 356 (367)
|+|-.|.-.=| +-.+.+= + ...+--++|++++.|...|++..+..-|
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s 479 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS 479 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc
Confidence 88877754422 2221110 0 0111138999999999999988776544
No 415
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=9.5e-08 Score=89.39 Aligned_cols=51 Identities=31% Similarity=0.607 Sum_probs=46.5
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
..+|...|++.+|. .+..|++-++++..|-++++|||+|+|||||++.|..
T Consensus 78 ~~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 45699999999995 3459999999999999999999999999999999998
No 416
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=89.12 Aligned_cols=60 Identities=27% Similarity=0.491 Sum_probs=52.7
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I 291 (367)
...+.+.|+|+.|++. ..++|..|++.+|++++|+|++||||||+++.+.|-..|..=.+
T Consensus 73 s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred cccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 3469999999999754 48999999999999999999999999999999999888855444
No 417
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.50 E-value=1.1e-07 Score=76.11 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=54.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCC-------------CCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcC
Q 017723 263 VGVVGRTGSGKTTLISALFRLVEP-------------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (367)
Q Consensus 263 vaIvG~SGsGKSTl~~ll~g~~~p-------------~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~ 329 (367)
++|+||||||||||++.|++.+++ ..|+ .+|++..-++....++. +.|+.++..++...|.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~~- 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGNY- 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCEE-
Confidence 789999999999999999999764 3444 47777777777777664 5677788888888874
Q ss_pred CCCCCCHHHHHHHHH
Q 017723 330 PLGMYSDNEIWEAME 344 (367)
Q Consensus 330 ~~~~~~~e~i~~al~ 344 (367)
++ .+.+.+.++++
T Consensus 76 yg--~~~~~i~~~~~ 88 (137)
T cd00071 76 YG--TSKAAVEEALA 88 (137)
T ss_pred ec--CcHHHHHHHHh
Confidence 22 24455555544
No 418
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.49 E-value=1.2e-07 Score=81.21 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=44.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
++|+.++|+|.|||||||++++|.+.+.+. .|.+.+||.++.. .+...++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 568999999999999999999999876543 5689999977652 2333577777775
No 419
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.48 E-value=3.1e-07 Score=83.67 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=45.6
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCee
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 297 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~ 297 (367)
..+++++ +++.+|++++|+|+||+|||||++.|+|..+|+.|.+..-|.+
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 4489999 9999999999999999999999999999999999888876643
No 420
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.41 E-value=3.5e-07 Score=86.18 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=47.9
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
.+++++ +++.+|++++|+|++|+|||||++.|.+..+|+.|.|...|..-++
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~e 177 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGRE 177 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHH
Confidence 489999 9999999999999999999999999999999999999988865544
No 421
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.38 E-value=3.4e-07 Score=88.22 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=56.5
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
++|++..|.. ..+++++++.+..|+.+.++|++|||||||++.|.|+++|.+|++.+++..+..
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 4577777743 348999999999999999999999999999999999999999999999876644
No 422
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.38 E-value=5.2e-07 Score=60.64 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=28.7
Q ss_pred eeeeEecC-CcEEEEEcCCCCCHHHHHHHHHcCCCCC
Q 017723 252 GITCTFKE-GTRVGVVGRTGSGKTTLISALFRLVEPE 287 (367)
Q Consensus 252 ~isl~i~~-G~~vaIvG~SGsGKSTl~~ll~g~~~p~ 287 (367)
+-.+++.+ |+.+.|.|+|||||||++..+.=.+-|.
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 44566765 6799999999999999999998655544
No 423
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.38 E-value=3.9e-07 Score=84.23 Aligned_cols=75 Identities=28% Similarity=0.484 Sum_probs=56.3
Q ss_pred EEEeCCCCCcceeeeeeEec-----CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 239 KVRYRPNTPLVLKGITCTFK-----EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~-----~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
-+.|+.-.+ .+.+..|++. .||.++++||+|-||||++++|+|..+|++|. ..++ .++|=
T Consensus 342 lv~y~~~~k-~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyK 406 (591)
T COG1245 342 LVEYPDLKK-TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYK 406 (591)
T ss_pred eeecchhee-ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeec
Confidence 345543222 5556666654 56789999999999999999999999999998 2222 78888
Q ss_pred ecCcc-ccccchhhhc
Q 017723 314 PQEPT-LFRGSVRTNL 328 (367)
Q Consensus 314 ~Q~~~-lf~~Ti~eNi 328 (367)
||-.. -|+||+++=+
T Consensus 407 PQyI~~~~~gtV~~~l 422 (591)
T COG1245 407 PQYISPDYDGTVEDLL 422 (591)
T ss_pred ceeecCCCCCcHHHHH
Confidence 88544 4899988865
No 424
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.37 E-value=5.1e-07 Score=77.40 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=35.8
Q ss_pred ceeeeeeEecCCc-EEEEEcCCCCCHHHHHHHHH--------cCCCCCCce
Q 017723 249 VLKGITCTFKEGT-RVGVVGRTGSGKTTLISALF--------RLVEPENGR 290 (367)
Q Consensus 249 ~L~~isl~i~~G~-~vaIvG~SGsGKSTl~~ll~--------g~~~p~~G~ 290 (367)
...++|+++++|+ .++|+||+|||||||++.+. |++-|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~ 66 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG 66 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc
Confidence 3457999999996 59999999999999999999 877776543
No 425
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.37 E-value=4.1e-07 Score=80.68 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=59.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCee-------cCCCChhhhhhhceEeecCc--cccccchhhhcCC-
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-------ICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNLDP- 330 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~-------i~~~~~~~~r~~i~~V~Q~~--~lf~~Ti~eNi~~- 330 (367)
..++|+|++|||||||+.+|.+++.+..|++..++.+ ....+.....-.+.+..|++ .++..+++++-..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 4999999999999999999999998888888765421 11111223333455555543 2455555554321
Q ss_pred ---CCCCCHHHHHHHHHHcCccHH
Q 017723 331 ---LGMYSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 331 ---~~~~~~e~i~~al~~a~l~~~ 351 (367)
+...+.+++.+.++.++++.+
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~ 126 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVK 126 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCC
Confidence 224678888999999998643
No 426
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.36 E-value=4.9e-07 Score=85.26 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=56.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~ 299 (367)
.++.++++-.+..+ ..+++++ +++.+||+++|+|+||+|||||++.|.|..+|+.|.+.+.|..-+
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgr 194 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR 194 (433)
T ss_pred ceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCch
Confidence 46777777777433 3499999 999999999999999999999999999999999998888775433
No 427
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.36 E-value=4.3e-07 Score=77.60 Aligned_cols=57 Identities=35% Similarity=0.473 Sum_probs=46.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
+++|+|++|||||||++.+.+.+.+..| +.+-..+........+..+.++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999888655 55555666666667777788999998764
No 428
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.34 E-value=5.2e-07 Score=85.54 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=57.0
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC---hhhh---hhhceEeecCcccc
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDL---RTKLSIIPQEPTLF 320 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~---r~~i~~V~Q~~~lf 320 (367)
..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.+...|.+-+++. .... ...-+++.|++..+
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~ 211 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR 211 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence 3489999 999999999999999999999999999999999999988655444432 1111 12245666666555
Q ss_pred ccc
Q 017723 321 RGS 323 (367)
Q Consensus 321 ~~T 323 (367)
+.-
T Consensus 212 p~~ 214 (422)
T TIGR02546 212 PSL 214 (422)
T ss_pred CHH
Confidence 443
No 429
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.33 E-value=1.2e-06 Score=75.72 Aligned_cols=44 Identities=30% Similarity=0.541 Sum_probs=35.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 322 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~ 322 (367)
+++..++|+|+||||||||++.|.+.++ ...+.+++||.+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~ 47 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQ 47 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCc
Confidence 4688999999999999999999999872 1257778888776654
No 430
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.32 E-value=4e-07 Score=85.79 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=52.6
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC---ceEEECCeecCCCChh---hhhhhceEeecCc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLK---DLRTKLSIIPQEP 317 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~---G~I~~~g~~i~~~~~~---~~r~~i~~V~Q~~ 317 (367)
+++.+ +++.+|++++|+|+||+|||||++.|+|+.+|+. |.|-.+|.++.++-.+ .-....++|.|++
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ 238 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP 238 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence 44444 9999999999999999999999999999999986 8999999888653211 1123456666653
No 431
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.32 E-value=6.7e-07 Score=78.37 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=39.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCce----EEECCeecCCCChhhhhhhceEeec
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGR----ILIDGLDICSMGLKDLRTKLSIIPQ 315 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~----I~~~g~~i~~~~~~~~r~~i~~V~Q 315 (367)
++...++|.|+||||||||++.|.+.+.+.+|. |.+|+.. . ....++..+++++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~---~-~~~~~~~~g~~~~ 88 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH---L-DNAVLDAHGLRPR 88 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc---C-CHHHHHhcccccc
Confidence 446799999999999999999999999999998 5445422 1 2233444555554
No 432
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.32 E-value=6.6e-07 Score=80.19 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=41.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
.++|+|+|||||||+++.|.+++.+..|.+...+ ++..++... |...++.+|+|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HHHhhccccccc
Confidence 3799999999999999999999998877655433 555555444 466777777754
No 433
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.31 E-value=1.6e-08 Score=101.31 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=25.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
.+++| +.|+||+|+||||+++.+++....
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 55666 999999999999999999987654
No 434
>PRK07261 topology modulation protein; Provisional
Probab=98.30 E-value=6e-07 Score=74.86 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=43.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCChhhhhh-hceEeecCccccccchhh
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT-KLSIIPQEPTLFRGSVRT 326 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~-~i~~V~Q~~~lf~~Ti~e 326 (367)
++++|+|+||||||||++.|.+.+... .+.+.+.. ...+.+.+++.. .-.++.|+.++++|+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~wIidg~~~~ 69 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-NWQERDDDDMIADISNFLLKHDWIIDGNYSW 69 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-ccccCCHHHHHHHHHHHHhCCCEEEcCcchh
Confidence 478999999999999999999876542 23333321 122334444433 344688899999999654
No 435
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.29 E-value=1.1e-06 Score=82.84 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=49.3
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~ 302 (367)
.+++++ +++.+|++++|+|+||+|||||++.|++..+++.+.|...|..-++..
T Consensus 146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~ 199 (434)
T PRK08472 146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIP 199 (434)
T ss_pred HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHH
Confidence 379999 999999999999999999999999999999999999998887776653
No 436
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.29 E-value=4.6e-07 Score=92.24 Aligned_cols=64 Identities=27% Similarity=0.466 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC----------------------------------------------------CCCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV----------------------------------------------------EPEN 288 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~----------------------------------------------------~p~~ 288 (367)
..++|.||+||||||++++|++.+ +|.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 378999999999999999999886 2778
Q ss_pred ceEEECCeecC-CCChhhhhhhceEeecCccccccchhhhcC
Q 017723 289 GRILIDGLDIC-SMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (367)
Q Consensus 289 G~I~~~g~~i~-~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~ 329 (367)
|.|++||.++. .+..++++++++.|.|.|. ||+|+.
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~-----vr~~l~ 118 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPP-----VRNVLI 118 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHH-----HHHHHH
Confidence 89999999999 8899999999999999998 888873
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.28 E-value=5.3e-07 Score=82.43 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=54.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC------CChhhhhhhceEeecCcccccc-chhhhc
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS------MGLKDLRTKLSIIPQEPTLFRG-SVRTNL 328 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~------~~~~~~r~~i~~V~Q~~~lf~~-Ti~eNi 328 (367)
++|+.++++|++||||||++.-|++.+.+..|+|.+.+.|... +....-|..+.+++|.....+. ++.+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 5689999999999999999999999999998999998877643 2233446678999986544332 344443
No 438
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.28 E-value=7e-07 Score=86.25 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc-chhhhc
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNL 328 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-Ti~eNi 328 (367)
-.|+|.|+||||||||++.|.+++ |..|.|.+||... ..+.+.+.+|+|.+|+. ++.+|+
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~-------~~~~i~~nfD~P~a~D~d~L~enL 126 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND-------SSRIIDGNFDDPRLTDYDTLLDNI 126 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec-------chhhhCccCCChhhcchhHHHHHH
Confidence 589999999999999999999997 5789999999742 11346678899988864 677777
No 439
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.25 E-value=8.2e-07 Score=83.65 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=46.9
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~ 301 (367)
+++ .++++.+|++++|+|+||+|||||++.|++..+|+.|.|.+.|..-+++
T Consensus 130 aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev 181 (418)
T TIGR03498 130 VID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREV 181 (418)
T ss_pred EEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHH
Confidence 565 6999999999999999999999999999999999999999988765554
No 440
>PRK05922 type III secretion system ATPase; Validated
Probab=98.23 E-value=3.2e-06 Score=79.77 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=44.7
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
+++.+ +++.+|++++|+|++|+|||||++.|+|..+++.|.+...|..-++
T Consensus 147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~e 197 (434)
T PRK05922 147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGRE 197 (434)
T ss_pred eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCch
Confidence 67776 9999999999999999999999999999999999998776654433
No 441
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=2.2e-06 Score=88.49 Aligned_cols=40 Identities=35% Similarity=0.444 Sum_probs=35.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHH
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLIS 278 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ 278 (367)
.++++|++. ..|+|+|++|++|+.++|+|+||||||||++
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 488888862 2699999999999999999999999999998
No 442
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.23 E-value=1.7e-06 Score=81.88 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=47.4
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
.+++++ +++.+|++++|+|+||+|||||++.++|..+++.|.|.+.|..-++
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~e 203 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGRE 203 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHH
Confidence 489999 9999999999999999999999999999999999999988854433
No 443
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.21 E-value=1.2e-06 Score=83.33 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=46.7
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
..+++++ +++.+|++++|+|+||+|||||++.|.|..+|+.|.+...|..-++
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~e 203 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGRE 203 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchH
Confidence 3489999 9999999999999999999999999999999999888776654443
No 444
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=2.1e-06 Score=81.05 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=54.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~ 301 (367)
++-++++-.|+-. ..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|..-++.
T Consensus 131 ~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev 197 (432)
T PRK06793 131 FEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREV 197 (432)
T ss_pred hheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccH
Confidence 5556666666432 3378875 99999999999999999999999999999999999998887665443
No 445
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.19 E-value=2.7e-06 Score=88.01 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=37.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
.|+++|++. ..|+|+|++|++|+.++|+|.||||||||++-++
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 478888751 2599999999999999999999999999998764
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=4e-06 Score=73.91 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=40.6
Q ss_pred eeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEE--ECCeecCCCChhhhhhhc
Q 017723 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL--IDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 254 sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~--~~g~~i~~~~~~~~r~~i 310 (367)
=+.+.+||+++|+|++|+|||||++.+.+..+...+++. +-...-+..+..++.+.+
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh
Confidence 357889999999999999999999999999987654443 221122224555555554
No 447
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.18 E-value=1.5e-06 Score=78.08 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC--CCCceEEECCeecCCCChhh
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVE--PENGRILIDGLDICSMGLKD 305 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~--p~~G~I~~~g~~i~~~~~~~ 305 (367)
..+||.|+|||||||+++.|.+++. |.+|+|.+-+.|--..+.+.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~ 109 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQV 109 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHH
Confidence 3789999999999999999999998 77888877555544444443
No 448
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.17 E-value=3.1e-06 Score=91.84 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=35.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHH
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLIS 278 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ 278 (367)
.++++|++. ..|+|+|++|++|++++|+|+||||||||++
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 478887752 2799999999999999999999999999999
No 449
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.17 E-value=1.9e-06 Score=73.81 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=33.0
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
+.+.+|+++++++|+.++|+|||||||||+++.+.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999999999999999999997
No 450
>PTZ00035 Rad51 protein; Provisional
Probab=98.17 E-value=2.8e-06 Score=78.41 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=58.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCC-C-----CCceE-EECCeecCCCChhhhhhhceEeecCccccccchhhhc
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVE-P-----ENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-p-----~~G~I-~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi 328 (367)
=+++|+.+.|+|++|||||||+..++.... | .+|.+ ++|+... ++++. +..+.|.+.+...++.+||
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 588999999999999999999999886555 3 45666 7776433 33332 4445677777777899999
Q ss_pred CCCCCCCHHHHHHHH
Q 017723 329 DPLGMYSDNEIWEAM 343 (367)
Q Consensus 329 ~~~~~~~~e~i~~al 343 (367)
.+....+.++..+.+
T Consensus 188 ~~~~~~~~e~~~~~l 202 (337)
T PTZ00035 188 AYARAYNHEHQMQLL 202 (337)
T ss_pred EEEccCCHHHHHHHH
Confidence 766555555544444
No 451
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.16 E-value=1.8e-06 Score=78.23 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=48.3
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE---CCeecCCCChhhhhh-hceEeecCccc
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRT-KLSIIPQEPTL 319 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~-~i~~V~Q~~~l 319 (367)
++.+...++ ++.++++|+||+|||||++.|+|...+..|+|.. .|.....-. ..++- ..+++.+.|-+
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~-~~~~~~~~~~liDtPG~ 223 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHR-ELFPLPGGGLLIDTPGF 223 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceE-EEEEcCCCCEEEECCCC
Confidence 445555555 5899999999999999999999999999999975 233222211 12222 26688888876
No 452
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.14 E-value=3e-06 Score=73.85 Aligned_cols=70 Identities=26% Similarity=0.324 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC---CCCCceE--------EECCeecCCC-ChhhhhhhceEee------cCccccc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV---EPENGRI--------LIDGLDICSM-GLKDLRTKLSIIP------QEPTLFR 321 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~---~p~~G~I--------~~~g~~i~~~-~~~~~r~~i~~V~------Q~~~lf~ 321 (367)
.-.++|+|++||||||+.++|+..+ -++.|.+ .-+|.+..+. ......+++.+.+ |+.+++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 3579999999999999999998444 7888886 4467777765 3555566777777 6778888
Q ss_pred cchhhhcC
Q 017723 322 GSVRTNLD 329 (367)
Q Consensus 322 ~Ti~eNi~ 329 (367)
..+.+||.
T Consensus 84 ~~i~~~lr 91 (225)
T PRK00023 84 EDVTDEIR 91 (225)
T ss_pred cchHHhhC
Confidence 88888875
No 453
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.13 E-value=1.3e-06 Score=83.64 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=45.5
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcC
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~ 329 (367)
+++.+..+++|+.+++||++|+||||.+..|++.+.+..|.. ++++|++|+ |.-+..||+.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHH
Confidence 444555567899999999999999999999999887776642 456667666 4455566653
No 454
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.13 E-value=2.5e-06 Score=73.99 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=43.1
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc-CCCCCCceEEEC
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILID 294 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g-~~~p~~G~I~~~ 294 (367)
+.+.+|+++.+++|++++|+||+|+||||+++.+.+ .+.+..|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 458999999999999999999999999999999999 778888876554
No 455
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.12 E-value=1.6e-06 Score=81.97 Aligned_cols=39 Identities=31% Similarity=0.608 Sum_probs=37.0
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE 287 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~ 287 (367)
.+++++ +.+.+|++++|+|+||+|||||++.|.|..+|+
T Consensus 157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 489999 999999999999999999999999999998876
No 456
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.09 E-value=3.1e-06 Score=91.87 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=45.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
+..+++++.+... ..|+||+|+|++|+.++|+|+||||||||+..+ +|. +|++.++.
T Consensus 936 l~~~~i~i~~~~~--~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~e 992 (1809)
T PRK00635 936 PVPADITIKNAYQ--HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYAE 992 (1809)
T ss_pred cccceEEEecccc--ccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeeec
Confidence 4456666666322 269999999999999999999999999988776 444 89998754
No 457
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.09 E-value=3e-06 Score=79.91 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=50.4
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
-+.++-.|. ....+++.+ +++.+|++++|+|++|+|||||++.|.+..+|+.+.+...|..-++
T Consensus 114 R~~~~~~~~-tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~~e 177 (411)
T TIGR03496 114 RAPIDEPLD-VGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGRE 177 (411)
T ss_pred ccCcceEee-eeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecChHH
Confidence 334444443 223488888 9999999999999999999999999999999998887766654433
No 458
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.07 E-value=4.2e-06 Score=71.88 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=26.7
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
..++++.+|++++|+|++||||||+++.+.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence 445666689999999999999999999999
No 459
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.05 E-value=3.9e-06 Score=77.99 Aligned_cols=49 Identities=31% Similarity=0.433 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCChhhhhhh
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
=.++|.|++|||||||++.|.+++++. .|.|.+||..+..-.+..+++.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~ 264 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhh
Confidence 468999999999999999999999776 7899999988755445555444
No 460
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=5e-06 Score=75.70 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=44.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE---CCeecCCCChhhhhhhceEeecCcccc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
+|+.++++|+||+|||||++.|+|...+..|+|.. .|...+.-..-.-....+++-..|-+.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~ 227 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFS 227 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcC
Confidence 59999999999999999999999999999999986 343322111000012355677766665
No 461
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.02 E-value=2.9e-06 Score=75.51 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC---CCceEEECCee
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLD 297 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p---~~G~I~~~g~~ 297 (367)
+|++++++|++|+||||+++.|++.+.. ..|-|..|+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 6799999999999999999999987643 34556556543
No 462
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.01 E-value=6.2e-06 Score=68.20 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCC---ceEEECCe
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGL 296 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~~---G~I~~~g~ 296 (367)
..++|+|+||||||||++.|.+.+.+.. |.|..+++
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 4799999999999999999999887654 89998766
No 463
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.01 E-value=3.6e-06 Score=73.11 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCceEEE
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEP--ENGRILI 293 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p--~~G~I~~ 293 (367)
.++|.|+|||||||+++.|.+.+.+ .+|+|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 4799999999999999999999975 4444443
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.00 E-value=4.9e-06 Score=71.18 Aligned_cols=32 Identities=31% Similarity=0.588 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
.++|+|+|||||||+++.|.+.+ ..|.+.+-+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~ 32 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS 32 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence 37999999999999999999998 334444433
No 465
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.00 E-value=5.5e-06 Score=70.26 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=40.5
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc--------CCCCCCceEEECCeec
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--------LVEPENGRILIDGLDI 298 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g--------~~~p~~G~I~~~g~~i 298 (367)
+|+++++..++++ ++|+|++|||||||++.+.+ -..|..+++.+++.++
T Consensus 9 ~~~~~~~~~~~~k-i~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~ 65 (190)
T cd00879 9 VLSSLGLYNKEAK-ILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF 65 (190)
T ss_pred HHHHhhcccCCCE-EEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence 6888888866655 59999999999999999997 4566778888888665
No 466
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.00 E-value=8.9e-06 Score=67.77 Aligned_cols=40 Identities=28% Similarity=0.539 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC----CCCCCc----eEEECCeecC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL----VEPENG----RILIDGLDIC 299 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~----~~p~~G----~I~~~g~~i~ 299 (367)
.-+++|+|++|||||||++.+.+. +.|+.| .+.++|.++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~ 61 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLN 61 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEE
Confidence 456999999999999999999997 779999 8888887663
No 467
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.98 E-value=7.1e-06 Score=66.82 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=28.8
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEE
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 292 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~ 292 (367)
-++.+-=.++ |+.++++|+||+|||||+|.|.+-.....|+|.
T Consensus 25 g~~~l~~~l~-~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 25 GIEELKELLK-GKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp THHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred CHHHHHHHhc-CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 3444444444 499999999999999999999998766666654
No 468
>PRK11098 microcin B17 transporter; Reviewed
Probab=97.97 E-value=0.0024 Score=60.06 Aligned_cols=193 Identities=13% Similarity=0.060 Sum_probs=102.2
Q ss_pred hHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q 017723 11 RIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPV-------------LIVAIPTVIVAKYIQGYYLSSA 77 (367)
Q Consensus 11 ~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------~l~~~~~~~~~~~~~~~~~~~~ 77 (367)
.-=.|+++|+...-.........++.++++++..+.+++.+|..+ ..+++...++...+.....++.
T Consensus 189 nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L 268 (409)
T PRK11098 189 GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKL 268 (409)
T ss_pred CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccc
Confidence 345799999998877777777788888888888888888877542 1112211222223333334433
Q ss_pred HHHHhhhhhccccHHHHHHHHhcchHHHHhcCchH-HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 017723 78 RELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMD-MFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAAL 156 (367)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (367)
.+..-+++..+++....+. ..+...+ +.|. ...+++.+..+.+.+...+.... .........+..++-.++.+
T Consensus 269 ~~Lnf~qqr~EAdFR~~LV-rvrenaE----~~E~~~L~~~F~~V~~N~~rl~~~~~~l-~~f~~~y~~~~~i~P~iv~a 342 (409)
T PRK11098 269 PGLEFKNQRVEAAYRKELV-YGEDDAD----RATPPTVRELFSNVRKNYFRLYFHYMYF-NIARILYLQVDNVFGLFLLF 342 (409)
T ss_pred hhhHHHHHHHHHHHHHHHh-Hhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333223333333222111 1111111 1121 33444444444444433332211 11111122222222222221
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCC
Q 017723 157 LIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL 210 (367)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~ 210 (367)
- .+..|.++.|.+.........+...+..+...+.++.+-.+..+|+.++.+.
T Consensus 343 P-~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 343 P-SIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred H-HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1245888888877766666777777888888889999999999999998753
No 469
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.97 E-value=3.6e-06 Score=70.56 Aligned_cols=43 Identities=30% Similarity=0.456 Sum_probs=36.0
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCceEEECCeecC
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDIC 299 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-p~~G~I~~~g~~i~ 299 (367)
.++|..+.++|++||||||+++.|.+.+. +..|.+.++|.+++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 46899999999999999999999987664 66788899875553
No 470
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.97 E-value=5.3e-06 Score=80.38 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=51.3
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~ 302 (367)
..+.+++++.+..|+.+.++|++|+||||+++.+.++++|.+|++.+++..+.++.
T Consensus 198 ~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 198 QHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred HHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 34889999999999999999999999999999999999999999999988776653
No 471
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.96 E-value=4.4e-06 Score=76.47 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=60.2
Q ss_pred ceee-eeeEecCCcEEEEEcCCCCCHHHHHHHHHc--CCCCCCc----e-EEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 249 VLKG-ITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENG----R-ILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 249 ~L~~-isl~i~~G~~vaIvG~SGsGKSTl~~ll~g--~~~p~~G----~-I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
.|+. +.=-+++|+.+.|.|++|+|||||+..++. .++++.| . +++|+.+. ++++ ++..+.|...+.
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~--f~~~----Rl~~ia~~~~~~ 157 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT--FRPE----RLLAIAERYGLN 157 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC--CCHH----HHHHHHHHcCCC
Confidence 3444 333688999999999999999999998886 4555454 4 88887543 3333 244445666666
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHH
Q 017723 321 RGSVRTNLDPLGMYSDNEIWEAME 344 (367)
Q Consensus 321 ~~Ti~eNi~~~~~~~~e~i~~al~ 344 (367)
..++.+||.+....+.++....++
T Consensus 158 ~~~~l~~i~~~~~~~~~~~~~~l~ 181 (316)
T TIGR02239 158 PEDVLDNVAYARAYNTDHQLQLLQ 181 (316)
T ss_pred hHHhhccEEEEecCChHHHHHHHH
Confidence 778889986654444454444443
No 472
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.96 E-value=8.3e-06 Score=76.79 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=35.7
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE 287 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~ 287 (367)
.+++.+ +++.+|++++|+|+||+|||||++.|+|..+++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 367777 999999999999999999999999999998874
No 473
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.96 E-value=1e-05 Score=70.70 Aligned_cols=84 Identities=21% Similarity=0.199 Sum_probs=55.3
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCC-CCC------CceEEECCeecCCCChhhhhhhceEeecCccccccchhhhc
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV-EPE------NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~-~p~------~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi 328 (367)
=+++|+.+.|+|++||||||++.-++... .+. .+.+++++.+ .++++.+++...-..++ ..++.+|+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~--~~~~~rl~~~~~~~~~~----~~~~~~~i 88 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG--AFRPERLVQLAVRFGLD----PEEVLDNI 88 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC--CCCHHHHHHHHHHhccc----hhhhhccE
Confidence 47899999999999999999999887654 444 6778888743 34455555444333343 34667777
Q ss_pred CCCCCCCHHHHHHHHHH
Q 017723 329 DPLGMYSDNEIWEAMEK 345 (367)
Q Consensus 329 ~~~~~~~~e~i~~al~~ 345 (367)
.+....+.+++.+.++.
T Consensus 89 ~~~~~~~~~~~~~~l~~ 105 (226)
T cd01393 89 YVARPYNGEQQLEIVEE 105 (226)
T ss_pred EEEeCCCHHHHHHHHHH
Confidence 65443445555544443
No 474
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.96 E-value=6e-06 Score=69.18 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=33.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEE-ECCee
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-IDGLD 297 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~-~~g~~ 297 (367)
++|+.++++|.+||||||+++.|.+.+.+..+++. +|+-+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 57999999999999999999999999877666655 67643
No 475
>PRK14530 adenylate kinase; Provisional
Probab=97.94 E-value=5.6e-06 Score=71.80 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
|.+++|+|++||||||+.+.|++.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999988854
No 476
>PRK07429 phosphoribulokinase; Provisional
Probab=97.93 E-value=1.2e-05 Score=73.85 Aligned_cols=53 Identities=34% Similarity=0.467 Sum_probs=39.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCce-EEECCeecCCCChhhhhhhceEeecCc
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGR-ILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~-I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
.++|.|+|||||||+++.|.+.+.+..+. |..|+. ..+++ ..|+..++.+++|
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~--~~~~~-~~r~~~g~~~l~p 63 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY--HSYDR-KQRKELGITALDP 63 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc--ccCCH-HHHHhcCCcccCc
Confidence 79999999999999999999999988764 444543 33333 3456677666655
No 477
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.93 E-value=8.1e-06 Score=69.74 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=42.3
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC-ChhhhhhhceEeecCccccc
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTKLSIIPQEPTLFR 321 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~-~~~~~r~~i~~V~Q~~~lf~ 321 (367)
++++++++.+| ..+|+|++|||||||+..|.-.+.+.... ...|..+.++ ....-...+.+++|+.-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~-~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~ 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASD-TNRGSSLKDLIKDGESSAKITVTLKNQGLDA 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccc-ccccccHHHHhhCCCCeEEEEEEEEcCCccC
Confidence 45677787776 77999999999999999997444332210 0112211111 01112456788888776665
No 478
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.93 E-value=2.2e-05 Score=85.48 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=43.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHH----HcCCCCC-CceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 260 GTRVGVVGRTGSGKTTLISAL----FRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll----~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
...++|+||+||||||++.+| .|..+|. .|.+++.+.++... ...+..|.+++++.
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~~a~V~l~F~~~ 88 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDVRAQIRLQFRDV 88 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--HhhhheeEEEEEcC
Confidence 349999999999999999999 4999996 79988877655432 35566777777643
No 479
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.93 E-value=1.7e-05 Score=69.81 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=49.4
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcC-CCC------CCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhc
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRL-VEP------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~-~~p------~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi 328 (367)
=+++|+.+.|+|++|||||||+.-++.. ..| .++.+++++.+ ..+.+.+++.. |.......++.+|+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 4789999999999999999999988632 334 37889988754 23333333221 11112234566776
Q ss_pred CCCCCCCHHHHHHH
Q 017723 329 DPLGMYSDNEIWEA 342 (367)
Q Consensus 329 ~~~~~~~~e~i~~a 342 (367)
.+....+.+++.+.
T Consensus 89 ~~~~~~~~~~l~~~ 102 (235)
T cd01123 89 YVARAYNSDHQLQL 102 (235)
T ss_pred EEEecCCHHHHHHH
Confidence 54433344444433
No 480
>PRK06820 type III secretion system ATPase; Validated
Probab=97.91 E-value=1.4e-05 Score=75.59 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=42.2
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 296 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~ 296 (367)
-.+++.+ +++.+||+++|+|+||+|||||++.|.+..+|+.+.+-.-|.
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 3489999 999999999999999999999999999999988765433343
No 481
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.91 E-value=5.5e-06 Score=68.50 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.1
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhh-hhceEeecCc
Q 017723 266 VGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKLSIIPQEP 317 (367)
Q Consensus 266 vG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i~~V~Q~~ 317 (367)
+|+|||||||+++.|.+.+ |.+.++|..+. +...+| ...++++|+.
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~--~~~~~~~~~~g~~~~~~ 47 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLH--PRRNIEKMASGEPLNDD 47 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCC--chhhhccccCCCCCChh
Confidence 5999999999999999887 67889884331 222233 3467777774
No 482
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.88 E-value=8.7e-06 Score=68.80 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=36.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC-ceEEECCeecC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDIC 299 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~-G~I~~~g~~i~ 299 (367)
..++|+.++++|++||||||+++.|.+.+.... +.+.++|.+++
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 457899999999999999999999999986433 35888887664
No 483
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.88 E-value=1.4e-05 Score=68.27 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
+++|+|+||+|||||++.|.|...+.+|.+..+.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~ 36 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV 36 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCc
Confidence 5899999999999999999999888888887763
No 484
>PRK12369 putative transporter; Reviewed
Probab=97.87 E-value=0.0057 Score=56.22 Aligned_cols=191 Identities=13% Similarity=0.057 Sum_probs=97.1
Q ss_pred HhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVL------------IVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 14 ~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.|+++|+...-.........++++++.++..+.+++.++..+. ..++...++...+..+..++..+..
T Consensus 118 QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln 197 (326)
T PRK12369 118 QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLE 197 (326)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhh
Confidence 7999999988777777777888888888888888887663321 1111112222233333343332222
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLL 161 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (367)
-+++..+++.-..+.- .+...+ .+.-.....+++.+..+...+...+..... ........+..++-.++.+- .++
T Consensus 198 ~~qq~~EAdFR~~Lvr-vre~ae--~~~E~~~l~~~f~~v~~n~~~~~~~~~~l~-~~~~~y~~~~~i~p~li~aP-~y~ 272 (326)
T PRK12369 198 YNNQKVEAAFRKELVY-AEDDKK--NYAKPETLIELFTGLRFNYFRLFLHYGYFN-IWLISFSQMMVIVPYLIMAP-GLF 272 (326)
T ss_pred HHHHHHHHHHHHHHHh-hccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHH-HHH
Confidence 2222222222111100 000000 011112334444444444343333322221 11112222222222222111 124
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcC
Q 017723 162 PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMH 209 (367)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~ 209 (367)
.|.++.|.+.........+...+..+...+.++.+-.+..+|+.++.+
T Consensus 273 sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 273 AGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred hCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888877766666666777777788888899999999999998864
No 485
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.87 E-value=1.7e-05 Score=74.89 Aligned_cols=40 Identities=38% Similarity=0.664 Sum_probs=37.8
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN 288 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~ 288 (367)
.+++++ +++.+|++++|+|+||+|||||++.+.+..+++-
T Consensus 151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 489999 9999999999999999999999999999999864
No 486
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.84 E-value=2.2e-05 Score=68.26 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=32.0
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
..+.+|+++++++|+.+.|+|||||||||+++.+.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 45899999999999999999999999999999863
No 487
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=97.83 E-value=0.0022 Score=58.03 Aligned_cols=122 Identities=11% Similarity=-0.028 Sum_probs=90.0
Q ss_pred HhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccHH
Q 017723 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLI-VAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 92 (367)
Q Consensus 14 ~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (367)
.|+++|++.+-+........++.+++.++.....++..+..+.+ +++...++...+.+...++..+...++++.++++.
T Consensus 130 QRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR 209 (281)
T PF06472_consen 130 QRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFR 209 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHH
Confidence 68999999887777777778888888777777777766655544 33333455556667777777777777777888888
Q ss_pred HHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHH
Q 017723 93 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAA 135 (367)
Q Consensus 93 ~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (367)
.......++.++|-.++.|+.+.++.++..++-.+...+....
T Consensus 210 ~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~ 252 (281)
T PF06472_consen 210 YALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRR 252 (281)
T ss_pred HHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999998888877776655544443333
No 488
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.83 E-value=2e-05 Score=72.69 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=37.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 296 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~ 296 (367)
-++++..+.|+|++||||||+++.|++..++.++.+.+...
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~ 198 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDT 198 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCC
Confidence 46789999999999999999999999999999998887653
No 489
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.82 E-value=1.9e-05 Score=76.36 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=35.5
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc---CCCCCCceEE
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR---LVEPENGRIL 292 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g---~~~p~~G~I~ 292 (367)
.++|+-+.+ +|..++|.|+|||||||+++.|+. +.-.+.|.++
T Consensus 274 LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y 319 (512)
T PRK13477 274 LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY 319 (512)
T ss_pred EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence 899999977 889999999999999999999994 4444445443
No 490
>PLN02165 adenylate isopentenyltransferase
Probab=97.80 E-value=2e-05 Score=71.71 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=37.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC---CCCceE-EECCeecCCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRI-LIDGLDICSMG 302 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~---p~~G~I-~~~g~~i~~~~ 302 (367)
++|+.++|+||+|||||||+..|++.+. .+.+++ .++|.||..-.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTak 89 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQ 89 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCC
Confidence 3588999999999999999999999976 556777 45888886553
No 491
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.80 E-value=9.9e-06 Score=83.92 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=33.5
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHH
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI 277 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~ 277 (367)
.|++++.. . + =|||||++||+++.|+|.|.||||||||+
T Consensus 5 ~I~i~gar-----~-h-NLKni~v~iP~~~l~v~TGvSGSGKSSLa 43 (943)
T PRK00349 5 KIIIRGAR-----E-H-NLKNIDLDIPRDKLVVFTGLSGSGKSSLA 43 (943)
T ss_pred cEEEeccc-----c-c-cccccccccCCCceEEEecCCCCCchhHH
Confidence 47777652 1 1 49999999999999999999999999998
No 492
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.80 E-value=1e-05 Score=83.73 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=28.0
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHH
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLI 277 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~ 277 (367)
=|||||++||+++.|++.|.||||||||+
T Consensus 11 NLKni~v~iP~~~l~v~TGvSGSGKSSLa 39 (924)
T TIGR00630 11 NLKNIDVEIPRDKLVVITGLSGSGKSSLA 39 (924)
T ss_pred cccccccccCCCceEEEecCCCCCchhHH
Confidence 49999999999999999999999999998
No 493
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.80 E-value=2e-05 Score=68.23 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=32.0
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
..+.+|++++.++ +.++|+|||||||||+++.+.+.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence 3488899999887 99999999999999999999753
No 494
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.78 E-value=4.1e-05 Score=66.98 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=34.5
Q ss_pred ecCCcEEEEEcCCCCCHHHH-HHHHHcCCCCCCceEEECC
Q 017723 257 FKEGTRVGVVGRTGSGKTTL-ISALFRLVEPENGRILIDG 295 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl-~~ll~g~~~p~~G~I~~~g 295 (367)
+++|+.+.|+|++||||||+ .+++.++.++.+..+++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 79999999999999999999 6899998887777777763
No 495
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.77 E-value=1.9e-05 Score=64.20 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=32.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCceEEECCeec
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDI 298 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-p~~G~I~~~g~~i 298 (367)
.-++|-.+.+.|.|||||||+++.|...+. --.-...+||.++
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 345688999999999999999999986554 3334556688554
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.75 E-value=3.7e-05 Score=64.90 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC------------CCCceEEECCeecCCCChhhhhhh
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~------------p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
+|..+.|+||||||||||++.|..-++ |-.|++ ||+|..-++.++..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~--~G~dY~fvs~~~F~~~ 63 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE--EGKTYFFLTIEEFKKG 63 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC--CCceeEeCCHHHHHHH
Confidence 578899999999999999999987653 233544 6777776776665554
No 497
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.74 E-value=2.2e-05 Score=67.98 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH---cCCCCCCceEE--------ECCeecCCC-ChhhhhhhceEeec
Q 017723 262 RVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDICSM-GLKDLRTKLSIIPQ 315 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~---g~~~p~~G~I~--------~~g~~i~~~-~~~~~r~~i~~V~Q 315 (367)
.++|.|++||||||+++.|. |+.-+++|.++ .+|.+..+- ....+++++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFI 69 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEe
Confidence 68999999999999999999 55558888775 345554311 12234455555554
No 498
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.72 E-value=4.1e-05 Score=65.87 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+.|..+.|+||||||||||++.|....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 358899999999999999999998654
No 499
>PRK09183 transposase/IS protein; Provisional
Probab=97.72 E-value=1.4e-05 Score=71.26 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=41.6
Q ss_pred EEeeEEEeCCCCC----cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE
Q 017723 235 LEDLKVRYRPNTP----LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 293 (367)
Q Consensus 235 ~~nvsf~Y~~~~~----~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~ 293 (367)
+++..|.+.+..+ ..|.++++ +++|+.+.|+||+|+|||+|++.|.........++.+
T Consensus 74 l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 74 FEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred HhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4444455543321 24777888 9999999999999999999999997665444446654
No 500
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.72 E-value=2.7e-05 Score=60.83 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++|+|+|||||||+++.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
Done!