Query 017723
Match_columns 367
No_of_seqs 148 out of 1950
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 03:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.8E-62 6.1E-67 521.6 40.6 365 1-367 184-552 (1321)
2 4f4c_A Multidrug resistance pr 100.0 3.5E-61 1.2E-65 511.7 31.1 364 1-367 842-1215(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 3E-58 1E-62 454.1 37.7 363 2-367 112-477 (587)
4 3b5x_A Lipid A export ATP-bind 100.0 1.4E-57 4.9E-62 449.8 42.2 361 2-367 114-478 (582)
5 3b60_A Lipid A export ATP-bind 100.0 1.7E-57 5.8E-62 449.3 40.4 362 1-367 113-478 (582)
6 4a82_A Cystic fibrosis transme 100.0 1.9E-58 6.4E-63 455.4 32.3 363 2-367 110-475 (578)
7 3qf4_B Uncharacterized ABC tra 100.0 2E-58 6.8E-63 456.7 30.6 362 1-367 125-489 (598)
8 2yl4_A ATP-binding cassette SU 100.0 1E-56 3.5E-61 444.8 42.1 363 2-367 111-481 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 3.2E-56 1.1E-60 472.6 34.0 365 1-367 156-524 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 2.6E-51 8.9E-56 435.1 33.3 365 1-367 797-1169(1284)
11 3nh6_A ATP-binding cassette SU 100.0 2.9E-40 9.8E-45 298.2 13.2 174 190-367 14-188 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.3E-32 4.5E-37 242.2 16.4 136 231-366 6-142 (247)
13 1mv5_A LMRA, multidrug resista 100.0 4.5E-32 1.5E-36 238.6 13.0 133 233-366 2-136 (243)
14 3gd7_A Fusion complex of cysti 100.0 2.7E-31 9.1E-36 247.0 15.5 139 228-367 15-153 (390)
15 2ghi_A Transport protein; mult 100.0 6.5E-31 2.2E-35 233.1 14.3 135 231-366 16-152 (260)
16 2ixe_A Antigen peptide transpo 100.0 2.1E-30 7.1E-35 231.1 13.4 135 231-365 15-152 (271)
17 2pze_A Cystic fibrosis transme 100.0 1.2E-28 4E-33 214.7 14.2 123 231-366 5-127 (229)
18 2cbz_A Multidrug resistance-as 100.0 3.2E-28 1.1E-32 212.9 11.6 122 232-366 3-124 (237)
19 3tif_A Uncharacterized ABC tra 99.9 1.1E-27 3.8E-32 209.3 11.3 125 233-357 2-144 (235)
20 3gfo_A Cobalt import ATP-bindi 99.9 7.9E-28 2.7E-32 214.3 9.4 127 232-359 7-144 (275)
21 3tui_C Methionine import ATP-b 99.9 3E-27 1E-31 216.8 10.2 129 231-359 23-164 (366)
22 4g1u_C Hemin import ATP-bindin 99.9 9.1E-27 3.1E-31 206.9 12.6 124 232-357 11-140 (266)
23 2olj_A Amino acid ABC transpor 99.9 1.2E-26 4E-31 205.5 12.1 125 232-358 24-159 (263)
24 2pcj_A ABC transporter, lipopr 99.9 5E-27 1.7E-31 203.7 9.2 125 232-358 4-140 (224)
25 1sgw_A Putative ABC transporte 99.9 8.6E-27 3E-31 200.0 10.6 116 232-356 10-131 (214)
26 2yz2_A Putative ABC transporte 99.9 1.9E-26 6.6E-31 205.2 12.6 124 233-359 3-139 (266)
27 1ji0_A ABC transporter; ATP bi 99.9 1.3E-26 4.5E-31 203.2 10.4 123 232-356 6-137 (240)
28 1vpl_A ABC transporter, ATP-bi 99.9 2.3E-26 8E-31 202.9 12.0 125 231-358 14-146 (256)
29 3fvq_A Fe(3+) IONS import ATP- 99.9 3E-26 1E-30 210.1 12.6 126 232-359 4-139 (359)
30 2qi9_C Vitamin B12 import ATP- 99.9 5.8E-26 2E-30 199.6 12.4 120 232-358 4-126 (249)
31 3rlf_A Maltose/maltodextrin im 99.9 3.2E-26 1.1E-30 211.3 11.0 124 232-359 3-134 (381)
32 1g6h_A High-affinity branched- 99.9 5E-26 1.7E-30 201.6 11.7 125 232-358 7-153 (257)
33 2ihy_A ABC transporter, ATP-bi 99.9 2.5E-26 8.6E-31 205.3 9.8 124 232-357 21-160 (279)
34 2yyz_A Sugar ABC transporter, 99.9 6.6E-26 2.3E-30 208.5 12.8 124 232-359 3-134 (359)
35 1b0u_A Histidine permease; ABC 99.9 6.4E-26 2.2E-30 201.2 12.2 126 232-359 6-154 (262)
36 1v43_A Sugar-binding transport 99.9 1.1E-25 3.9E-30 207.9 13.5 124 232-359 11-142 (372)
37 1z47_A CYSA, putative ABC-tran 99.9 4.3E-26 1.5E-30 209.2 10.6 126 231-359 13-146 (355)
38 3d31_A Sulfate/molybdate ABC t 99.9 9.8E-26 3.4E-30 206.7 11.6 122 233-359 2-128 (348)
39 2bbs_A Cystic fibrosis transme 99.9 9.4E-26 3.2E-30 202.4 10.3 118 231-366 39-156 (290)
40 2it1_A 362AA long hypothetical 99.9 8.5E-26 2.9E-30 208.0 10.2 124 232-359 3-134 (362)
41 2onk_A Molybdate/tungstate ABC 99.9 1.7E-25 5.7E-30 195.7 11.4 119 233-358 2-126 (240)
42 1oxx_K GLCV, glucose, ABC tran 99.9 7.9E-26 2.7E-30 208.1 9.7 125 233-359 4-141 (353)
43 1g29_1 MALK, maltose transport 99.9 2.6E-25 9E-30 205.9 9.1 124 232-359 3-140 (372)
44 2d2e_A SUFC protein; ABC-ATPas 99.9 8.4E-25 2.9E-29 192.9 11.5 122 233-356 4-140 (250)
45 2pjz_A Hypothetical protein ST 99.9 5.5E-25 1.9E-29 194.8 8.6 120 233-358 2-128 (263)
46 2nq2_C Hypothetical ABC transp 99.9 2.5E-24 8.6E-29 189.8 9.2 113 232-358 4-128 (253)
47 2zu0_C Probable ATP-dependent 99.9 4.4E-24 1.5E-28 189.9 8.8 121 232-354 20-159 (267)
48 2v9p_A Replication protein E1; 99.9 1.9E-25 6.3E-30 200.8 -8.7 139 182-360 56-197 (305)
49 2gza_A Type IV secretion syste 99.8 7.4E-23 2.5E-27 190.0 -9.4 130 234-365 137-283 (361)
50 2iw3_A Elongation factor 3A; a 99.7 1.6E-17 5.3E-22 169.2 9.0 64 232-295 671-734 (986)
51 2f1r_A Molybdopterin-guanine d 99.7 7.9E-19 2.7E-23 145.0 -0.6 89 261-366 3-103 (171)
52 3bk7_A ABC transporter ATP-bin 99.7 3.1E-17 1.1E-21 161.3 6.1 111 231-357 356-470 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.7 3.8E-17 1.3E-21 159.0 6.2 110 232-357 287-400 (538)
54 3ozx_A RNAse L inhibitor; ATP 99.7 1.1E-16 3.6E-21 155.5 7.6 113 231-358 268-385 (538)
55 3bk7_A ABC transporter ATP-bin 99.6 3.3E-17 1.1E-21 161.1 3.7 118 236-357 95-227 (607)
56 1yqt_A RNAse L inhibitor; ATP- 99.6 5.9E-17 2E-21 157.7 2.4 120 233-356 21-156 (538)
57 1z6g_A Guanylate kinase; struc 99.6 7.8E-17 2.7E-21 139.1 2.3 93 248-347 11-115 (218)
58 1htw_A HI0065; nucleotide-bind 99.6 3.5E-17 1.2E-21 133.4 -0.5 86 236-329 11-96 (158)
59 2npi_A Protein CLP1; CLP1-PCF1 99.6 1.9E-18 6.4E-23 164.5 -11.8 102 232-351 118-230 (460)
60 2ewv_A Twitching motility prot 99.6 1.4E-16 4.6E-21 148.3 -0.9 94 249-348 127-233 (372)
61 3aez_A Pantothenate kinase; tr 99.6 6.6E-17 2.2E-21 146.6 -3.0 124 197-347 14-166 (312)
62 1lvg_A Guanylate kinase, GMP k 99.6 2.1E-16 7.2E-21 134.3 -1.1 97 257-362 1-110 (198)
63 2dpy_A FLII, flagellum-specifi 99.5 2.1E-16 7.3E-21 149.5 -2.4 135 193-329 91-236 (438)
64 1lw7_A Transcriptional regulat 99.5 1.3E-16 4.5E-21 148.6 -4.1 108 249-358 157-275 (365)
65 2eyu_A Twitching motility prot 99.5 3.8E-16 1.3E-20 138.1 -1.3 102 233-346 6-120 (261)
66 3j16_B RLI1P; ribosome recycli 99.5 5E-15 1.7E-19 145.4 4.1 121 236-358 81-221 (608)
67 3j16_B RLI1P; ribosome recycli 99.5 1.4E-14 4.7E-19 142.3 6.5 109 236-358 350-467 (608)
68 2pt7_A CAG-ALFA; ATPase, prote 99.5 8.3E-16 2.8E-20 140.6 -2.4 83 235-328 151-233 (330)
69 3sop_A Neuronal-specific septi 99.5 1.4E-15 4.7E-20 135.2 -1.2 95 262-359 4-103 (270)
70 1tq4_A IIGP1, interferon-induc 99.5 3.3E-15 1.1E-19 139.7 0.5 92 248-350 37-148 (413)
71 2iw3_A Elongation factor 3A; a 99.5 1.5E-13 5.2E-18 140.1 11.7 109 231-356 434-546 (986)
72 3b85_A Phosphate starvation-in 99.5 3.8E-15 1.3E-19 127.1 -0.8 62 248-317 14-75 (208)
73 3b9q_A Chloroplast SRP recepto 99.5 1.3E-14 4.6E-19 130.8 2.2 80 250-329 90-177 (302)
74 1u0l_A Probable GTPase ENGC; p 99.4 2.8E-14 9.7E-19 129.1 4.2 103 255-358 164-291 (301)
75 3ozx_A RNAse L inhibitor; ATP 99.4 8.4E-15 2.9E-19 142.2 0.3 116 236-356 3-136 (538)
76 2qag_B Septin-6, protein NEDD5 99.4 1.1E-14 3.6E-19 136.2 0.7 92 232-335 16-110 (427)
77 1znw_A Guanylate kinase, GMP k 99.4 4.2E-14 1.4E-18 121.0 2.5 78 245-328 7-85 (207)
78 4e22_A Cytidylate kinase; P-lo 99.4 3E-14 1E-18 125.7 1.6 101 258-364 25-143 (252)
79 2og2_A Putative signal recogni 99.4 4.8E-14 1.6E-18 129.6 2.4 79 251-329 148-234 (359)
80 3ux8_A Excinuclease ABC, A sub 99.4 9.6E-14 3.3E-18 139.2 4.1 81 247-331 31-159 (670)
81 3szr_A Interferon-induced GTP- 99.4 1.2E-14 4.2E-19 143.5 -3.2 94 232-328 10-118 (608)
82 2qm8_A GTPase/ATPase; G protei 99.4 3.5E-15 1.2E-19 137.0 -7.5 87 233-321 30-120 (337)
83 2yhs_A FTSY, cell division pro 99.4 1.4E-13 4.6E-18 130.4 2.4 80 250-329 283-369 (503)
84 3euj_A Chromosome partition pr 99.4 4.1E-13 1.4E-17 127.6 5.6 80 234-318 8-95 (483)
85 1sq5_A Pantothenate kinase; P- 99.4 1.4E-14 4.9E-19 131.5 -4.3 90 231-329 36-150 (308)
86 2jeo_A Uridine-cytidine kinase 99.3 2.3E-13 8E-18 119.4 2.9 70 246-329 11-80 (245)
87 1rj9_A FTSY, signal recognitio 99.3 6.5E-13 2.2E-17 119.8 4.8 70 259-328 101-177 (304)
88 2yv5_A YJEQ protein; hydrolase 99.3 7.3E-13 2.5E-17 119.7 5.0 101 255-357 160-286 (302)
89 1s96_A Guanylate kinase, GMP k 99.3 2.3E-13 7.7E-18 117.1 1.0 87 255-345 11-107 (219)
90 3asz_A Uridine kinase; cytidin 99.3 7E-13 2.4E-17 113.6 3.3 86 256-365 2-94 (211)
91 3ux8_A Excinuclease ABC, A sub 99.3 5.8E-13 2E-17 133.5 2.0 67 237-303 325-412 (670)
92 2obl_A ESCN; ATPase, hydrolase 99.3 9E-13 3.1E-17 121.0 2.4 83 232-316 45-134 (347)
93 1tf7_A KAIC; homohexamer, hexa 99.3 4.7E-13 1.6E-17 130.4 -0.2 76 241-318 20-98 (525)
94 1cke_A CK, MSSA, protein (cyti 99.2 3.7E-13 1.3E-17 116.6 -1.4 99 259-363 4-120 (227)
95 1pui_A ENGB, probable GTP-bind 99.2 5.5E-13 1.9E-17 113.9 -0.4 56 233-293 4-64 (210)
96 3tr0_A Guanylate kinase, GMP k 99.2 2.7E-12 9.3E-17 109.2 3.5 88 254-345 1-96 (205)
97 1t9h_A YLOQ, probable GTPase E 99.2 2.5E-12 8.5E-17 115.6 2.8 95 255-351 168-288 (307)
98 4aby_A DNA repair protein RECN 99.2 5.8E-12 2E-16 119.2 5.0 86 232-327 42-166 (415)
99 1qhl_A Protein (cell division 99.2 4.1E-13 1.4E-17 115.6 -4.0 75 232-316 9-91 (227)
100 3e70_C DPA, signal recognition 99.2 6.1E-12 2.1E-16 114.5 3.4 74 256-329 125-205 (328)
101 3c8u_A Fructokinase; YP_612366 99.2 6.4E-13 2.2E-17 113.6 -3.2 54 257-329 19-72 (208)
102 3ney_A 55 kDa erythrocyte memb 99.2 7.4E-12 2.5E-16 105.1 3.4 83 255-345 14-109 (197)
103 1zp6_A Hypothetical protein AT 99.2 3.4E-12 1.2E-16 107.4 1.0 69 256-329 5-73 (191)
104 4a74_A DNA repair and recombin 99.2 7.3E-12 2.5E-16 108.5 3.0 71 256-332 21-98 (231)
105 2rcn_A Probable GTPase ENGC; Y 99.2 6.4E-12 2.2E-16 115.1 2.4 103 249-358 205-314 (358)
106 2qag_C Septin-7; cell cycle, c 99.2 5.6E-12 1.9E-16 118.3 1.6 90 231-332 10-100 (418)
107 2vf7_A UVRA2, excinuclease ABC 99.1 1.7E-11 5.8E-16 123.9 3.9 66 231-303 501-599 (842)
108 2i3b_A HCR-ntpase, human cance 99.1 6.4E-12 2.2E-16 105.4 0.1 54 260-317 1-54 (189)
109 1p9r_A General secretion pathw 99.1 1.3E-12 4.6E-17 122.6 -4.6 101 249-351 158-288 (418)
110 3lnc_A Guanylate kinase, GMP k 99.1 1.4E-11 4.9E-16 106.9 2.0 36 249-284 16-52 (231)
111 1pzn_A RAD51, DNA repair and r 99.1 2.1E-11 7.2E-16 112.3 2.9 91 249-345 119-217 (349)
112 1kgd_A CASK, peripheral plasma 99.1 1.9E-11 6.5E-16 101.9 2.1 82 258-345 3-95 (180)
113 2oap_1 GSPE-2, type II secreti 99.0 8.1E-11 2.8E-15 113.4 4.4 95 248-346 248-354 (511)
114 1odf_A YGR205W, hypothetical 3 99.0 4.6E-12 1.6E-16 113.5 -4.1 90 258-363 29-122 (290)
115 2r6f_A Excinuclease ABC subuni 99.0 1.2E-10 4.1E-15 118.1 4.9 44 231-281 628-671 (972)
116 4gp7_A Metallophosphoesterase; 99.0 4.6E-11 1.6E-15 98.7 1.5 28 252-279 1-28 (171)
117 1nij_A Hypothetical protein YJ 99.0 3.9E-11 1.3E-15 109.3 0.5 72 260-331 4-102 (318)
118 2qnr_A Septin-2, protein NEDD5 99.0 1.3E-10 4.3E-15 105.0 3.2 84 236-331 2-87 (301)
119 2ehv_A Hypothetical protein PH 99.0 1.8E-11 6.1E-16 107.4 -2.8 81 233-319 7-90 (251)
120 3jvv_A Twitching mobility prot 99.0 1.1E-10 3.9E-15 107.4 1.9 79 236-318 92-178 (356)
121 3a00_A Guanylate kinase, GMP k 99.0 1.4E-10 4.8E-15 97.1 1.9 78 260-345 1-91 (186)
122 1ye8_A Protein THEP1, hypothet 98.9 9E-11 3.1E-15 97.5 0.3 51 262-317 2-52 (178)
123 2ygr_A Uvrabc system protein A 98.9 4.5E-10 1.5E-14 114.3 5.4 44 231-281 646-689 (993)
124 3pih_A Uvrabc system protein A 98.9 4.6E-10 1.6E-14 114.4 4.7 30 248-277 598-627 (916)
125 3nwj_A ATSK2; P loop, shikimat 98.9 1.4E-10 4.8E-15 101.4 -0.1 52 232-284 17-72 (250)
126 2x8a_A Nuclear valosin-contain 98.9 1.4E-10 4.7E-15 103.3 -0.3 79 248-330 34-114 (274)
127 2o8b_B DNA mismatch repair pro 98.9 4.8E-10 1.6E-14 116.1 3.5 75 231-329 749-836 (1022)
128 2j41_A Guanylate kinase; GMP, 98.9 8.3E-10 2.9E-14 93.8 3.9 63 255-320 1-63 (207)
129 1e69_A Chromosome segregation 98.9 8E-10 2.7E-14 100.8 3.7 90 232-330 5-145 (322)
130 1cr0_A DNA primase/helicase; R 98.8 4.4E-10 1.5E-14 101.3 0.7 67 248-317 23-90 (296)
131 3uie_A Adenylyl-sulfate kinase 98.8 1.5E-10 5.2E-15 98.1 -2.5 51 249-300 14-66 (200)
132 4eun_A Thermoresistant glucoki 98.8 6.4E-10 2.2E-14 94.2 1.2 69 255-328 24-93 (200)
133 3kta_A Chromosome segregation 98.8 9.7E-10 3.3E-14 91.5 2.3 99 251-350 18-137 (182)
134 2qt1_A Nicotinamide riboside k 98.8 8E-10 2.7E-14 94.1 1.2 52 253-330 14-65 (207)
135 2bbw_A Adenylate kinase 4, AK4 98.8 4.2E-10 1.4E-14 98.6 -1.8 67 259-329 26-96 (246)
136 1n0w_A DNA repair protein RAD5 98.7 3.7E-09 1.3E-13 92.1 3.7 76 256-338 20-103 (243)
137 1zu4_A FTSY; GTPase, signal re 98.7 2E-09 6.8E-14 97.7 2.0 80 249-328 94-184 (320)
138 2dy1_A Elongation factor G; tr 98.7 2.1E-09 7.1E-14 107.3 2.2 106 254-360 3-112 (665)
139 1in4_A RUVB, holliday junction 98.7 3.2E-11 1.1E-15 110.7 -10.8 93 233-328 19-122 (334)
140 1ewq_A DNA mismatch repair pro 98.7 2.6E-09 9.1E-14 107.4 2.1 83 230-331 548-635 (765)
141 3tau_A Guanylate kinase, GMP k 98.7 4.2E-09 1.4E-13 89.7 2.9 68 258-328 6-84 (208)
142 2bdt_A BH3686; alpha-beta prot 98.7 1.9E-09 6.4E-14 90.4 0.5 60 260-328 2-62 (189)
143 3lda_A DNA repair protein RAD5 98.7 6.4E-09 2.2E-13 97.0 3.8 76 255-337 173-256 (400)
144 3vaa_A Shikimate kinase, SK; s 98.7 7.2E-09 2.5E-13 87.6 3.6 44 241-284 5-49 (199)
145 3cr8_A Sulfate adenylyltranfer 98.7 1.7E-09 5.7E-14 105.0 -0.9 88 255-347 364-468 (552)
146 2vp4_A Deoxynucleoside kinase; 98.7 8.6E-10 2.9E-14 95.6 -2.9 65 253-321 13-87 (230)
147 3ice_A Transcription terminati 98.7 4.1E-09 1.4E-13 96.2 1.5 54 230-284 131-198 (422)
148 1iy2_A ATP-dependent metallopr 98.6 1.3E-09 4.5E-14 97.2 -2.9 89 234-328 51-141 (278)
149 2w0m_A SSO2452; RECA, SSPF, un 98.6 6.1E-09 2.1E-13 90.0 1.1 68 247-317 9-80 (235)
150 1ixz_A ATP-dependent metallopr 98.6 1.6E-09 5.5E-14 95.3 -3.0 90 233-328 26-117 (254)
151 1svm_A Large T antigen; AAA+ f 98.6 8.7E-09 3E-13 95.3 1.5 64 248-319 157-220 (377)
152 1rz3_A Hypothetical protein rb 98.4 4.6E-08 1.6E-12 82.8 2.0 46 256-301 18-63 (201)
153 2kjq_A DNAA-related protein; s 98.4 1.3E-07 4.6E-12 75.8 4.4 46 249-300 30-77 (149)
154 1knq_A Gluconate kinase; ALFA/ 98.4 7.5E-08 2.6E-12 79.4 2.8 53 258-316 6-59 (175)
155 1ls1_A Signal recognition part 98.4 2.2E-08 7.6E-13 89.8 -1.1 62 233-300 77-138 (295)
156 3tqc_A Pantothenate kinase; bi 98.4 7.8E-08 2.7E-12 86.9 1.4 46 248-293 74-127 (321)
157 1sxj_E Activator 1 40 kDa subu 98.4 1.6E-07 5.6E-12 86.5 3.3 59 259-319 35-94 (354)
158 1udx_A The GTP-binding protein 98.3 2.3E-07 7.7E-12 87.0 3.9 35 249-283 146-180 (416)
159 1oix_A RAS-related protein RAB 98.3 1.2E-07 4E-12 79.4 1.7 37 262-298 31-78 (191)
160 2cvh_A DNA repair and recombin 98.3 1.7E-07 6E-12 80.0 2.4 47 248-296 7-54 (220)
161 1vma_A Cell division protein F 98.3 1.7E-07 5.7E-12 84.4 2.1 48 253-300 97-144 (306)
162 3thx_A DNA mismatch repair pro 98.3 4.6E-07 1.6E-11 92.9 5.4 60 231-290 630-700 (934)
163 2pez_A Bifunctional 3'-phospho 98.2 1.2E-07 4.2E-12 78.4 -0.3 41 258-299 3-45 (179)
164 3ec2_A DNA replication protein 98.2 2.1E-07 7.2E-12 77.1 0.1 37 254-290 32-68 (180)
165 3k1j_A LON protease, ATP-depen 98.2 5.5E-07 1.9E-11 89.0 2.8 65 248-317 48-113 (604)
166 3r20_A Cytidylate kinase; stru 98.2 3.3E-07 1.1E-11 78.9 0.8 71 259-329 8-96 (233)
167 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.2E-06 4.2E-11 81.2 4.6 41 256-296 16-68 (392)
168 1f6b_A SAR1; gtpases, N-termin 98.1 6.2E-07 2.1E-11 75.4 2.1 58 239-298 6-71 (198)
169 3m6a_A ATP-dependent protease 98.1 4.4E-07 1.5E-11 88.4 1.2 81 235-318 86-166 (543)
170 2dhr_A FTSH; AAA+ protein, hex 98.1 6.1E-07 2.1E-11 86.0 2.0 90 233-328 41-132 (499)
171 2qor_A Guanylate kinase; phosp 98.1 5.1E-07 1.7E-11 76.4 1.3 30 256-285 8-37 (204)
172 1wb9_A DNA mismatch repair pro 98.1 1.4E-06 4.9E-11 88.1 4.7 82 232-330 577-665 (800)
173 3thx_B DNA mismatch repair pro 98.1 1E-06 3.5E-11 90.1 3.4 52 231-282 639-695 (918)
174 1nlf_A Regulatory protein REPA 98.1 8.6E-07 2.9E-11 78.9 2.5 34 256-291 26-59 (279)
175 1mky_A Probable GTP-binding pr 98.1 1.9E-06 6.5E-11 81.8 4.6 60 261-320 181-252 (439)
176 2f9l_A RAB11B, member RAS onco 98.1 1.6E-06 5.3E-11 72.9 3.6 37 262-298 7-54 (199)
177 4eaq_A DTMP kinase, thymidylat 98.1 1.6E-06 5.4E-11 74.8 3.0 44 250-294 13-59 (229)
178 1m7g_A Adenylylsulfate kinase; 98.1 5.8E-07 2E-11 76.5 0.2 45 255-299 20-66 (211)
179 2px0_A Flagellar biosynthesis 98.0 1.6E-06 5.5E-11 77.6 3.0 43 258-300 103-146 (296)
180 4ad8_A DNA repair protein RECN 98.0 1.1E-06 3.7E-11 85.2 2.0 80 232-321 42-160 (517)
181 1w1w_A Structural maintenance 98.0 2.1E-06 7.3E-11 81.3 3.4 50 232-289 6-55 (430)
182 1kag_A SKI, shikimate kinase I 98.0 2.3E-06 8E-11 70.0 3.1 33 259-295 3-35 (173)
183 2p67_A LAO/AO transport system 98.0 9.5E-07 3.2E-11 81.0 0.5 51 249-299 45-95 (341)
184 2o5v_A DNA replication and rep 98.0 5.4E-06 1.9E-10 76.1 4.6 33 249-282 16-48 (359)
185 3hr8_A Protein RECA; alpha and 97.9 4.2E-06 1.4E-10 76.6 3.0 70 249-321 48-120 (356)
186 3t34_A Dynamin-related protein 97.9 5.6E-06 1.9E-10 76.4 3.9 43 249-294 26-70 (360)
187 1tf7_A KAIC; homohexamer, hexa 97.9 3.9E-06 1.3E-10 81.5 2.9 41 254-295 275-317 (525)
188 1m2o_B GTP-binding protein SAR 97.9 8.4E-06 2.9E-10 67.9 4.6 49 249-298 13-69 (190)
189 2www_A Methylmalonic aciduria 97.9 3E-06 1E-10 77.9 1.8 42 258-299 72-113 (349)
190 2gj8_A MNME, tRNA modification 97.9 9.5E-06 3.2E-10 66.4 4.7 41 258-298 2-54 (172)
191 2ffh_A Protein (FFH); SRP54, s 97.9 4.9E-06 1.7E-10 78.0 2.6 63 233-301 77-139 (425)
192 3qf7_A RAD50; ABC-ATPase, ATPa 97.9 1.1E-05 3.7E-10 74.6 4.9 32 249-281 13-44 (365)
193 2vf7_A UVRA2, excinuclease ABC 97.8 7.2E-06 2.4E-10 83.1 3.9 40 231-277 14-53 (842)
194 2qtf_A Protein HFLX, GTP-bindi 97.8 9.5E-06 3.3E-10 74.8 3.8 51 262-318 181-242 (364)
195 1y63_A LMAJ004144AAA protein; 97.8 1.1E-05 3.7E-10 67.0 3.5 32 252-283 2-33 (184)
196 2dr3_A UPF0273 protein PH0284; 97.8 2E-06 6.8E-11 74.7 -1.1 64 249-316 11-79 (247)
197 2jaq_A Deoxyguanosine kinase; 97.8 1.9E-06 6.5E-11 72.5 -1.2 68 262-329 2-85 (205)
198 2r6f_A Excinuclease ABC subuni 97.8 1E-05 3.5E-10 82.4 3.8 39 232-277 23-61 (972)
199 2ygr_A Uvrabc system protein A 97.8 1E-05 3.5E-10 82.7 3.8 40 231-277 24-63 (993)
200 1j8m_F SRP54, signal recogniti 97.8 5.3E-06 1.8E-10 74.3 1.0 49 251-300 89-138 (297)
201 3pih_A Uvrabc system protein A 97.7 9.9E-06 3.4E-10 82.8 2.9 29 249-277 13-41 (916)
202 2ius_A DNA translocase FTSK; n 97.7 1.9E-05 6.6E-10 75.5 4.7 54 252-305 159-214 (512)
203 1sxj_C Activator 1 40 kDa subu 97.7 1.8E-06 6E-11 79.2 -2.6 68 248-315 32-102 (340)
204 2yvu_A Probable adenylyl-sulfa 97.7 1.3E-05 4.5E-10 66.5 2.1 42 256-297 9-51 (186)
205 1ypw_A Transitional endoplasmi 97.7 7E-06 2.4E-10 83.6 0.4 62 255-318 233-294 (806)
206 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3E-05 1E-09 61.9 3.8 29 252-281 16-44 (149)
207 2ohf_A Protein OLA1, GTP-bindi 97.6 3E-05 1E-09 71.8 4.1 41 256-296 18-69 (396)
208 3t61_A Gluconokinase; PSI-biol 97.6 1.7E-05 5.9E-10 66.7 2.1 35 260-298 18-52 (202)
209 2p5t_B PEZT; postsegregational 97.6 1.7E-05 5.8E-10 69.3 2.0 43 256-300 28-70 (253)
210 2wji_A Ferrous iron transport 97.6 6.9E-05 2.4E-09 60.6 5.1 24 261-284 4-27 (165)
211 1lv7_A FTSH; alpha/beta domain 97.6 1.4E-05 4.9E-10 69.9 1.0 49 249-301 36-84 (257)
212 1jjv_A Dephospho-COA kinase; P 97.6 3.3E-05 1.1E-09 65.1 3.1 29 262-295 4-32 (206)
213 1np6_A Molybdopterin-guanine d 97.5 2.9E-05 9.9E-10 63.7 2.4 38 260-297 6-46 (174)
214 1ex7_A Guanylate kinase; subst 97.5 3.6E-05 1.2E-09 63.8 3.0 45 263-309 4-61 (186)
215 2qag_A Septin-2, protein NEDD5 97.5 8.2E-06 2.8E-10 75.3 -1.6 54 230-291 15-68 (361)
216 2wjg_A FEOB, ferrous iron tran 97.5 5.7E-05 2E-09 62.3 3.7 37 261-297 8-55 (188)
217 4ag6_A VIRB4 ATPase, type IV s 97.5 5.5E-05 1.9E-09 70.6 4.0 36 259-294 34-69 (392)
218 2zej_A Dardarin, leucine-rich 97.5 5.9E-05 2E-09 62.2 3.3 23 262-284 4-26 (184)
219 2zr9_A Protein RECA, recombina 97.4 7.5E-05 2.6E-09 68.4 3.6 69 249-320 48-119 (349)
220 2if2_A Dephospho-COA kinase; a 97.4 8.6E-05 2.9E-09 62.4 3.7 21 262-282 3-23 (204)
221 1qhx_A CPT, protein (chloramph 97.4 8.7E-05 3E-09 60.8 3.3 26 260-285 3-28 (178)
222 1uf9_A TT1252 protein; P-loop, 97.4 9.3E-05 3.2E-09 62.0 3.5 32 260-296 8-39 (203)
223 3ihw_A Centg3; RAS, centaurin, 97.4 0.00019 6.6E-09 59.2 5.2 37 262-298 22-67 (184)
224 2ga8_A Hypothetical 39.9 kDa p 97.3 4.2E-05 1.4E-09 69.5 0.9 36 249-284 11-48 (359)
225 2dby_A GTP-binding protein; GD 97.3 0.00014 4.8E-09 66.9 4.3 59 262-350 3-61 (368)
226 3cm0_A Adenylate kinase; ATP-b 97.3 0.0001 3.5E-09 60.8 3.0 26 258-283 2-27 (186)
227 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.9E-09 59.0 3.2 24 261-284 2-25 (173)
228 1gtv_A TMK, thymidylate kinase 97.2 3.5E-05 1.2E-09 65.3 -0.6 29 262-290 2-30 (214)
229 3qks_A DNA double-strand break 97.2 0.00019 6.6E-09 60.4 3.8 29 252-281 16-44 (203)
230 1ega_A Protein (GTP-binding pr 97.2 0.00011 3.8E-09 65.9 2.4 25 259-283 7-31 (301)
231 2z43_A DNA repair and recombin 97.2 0.00015 5.2E-09 65.7 3.3 40 256-295 103-149 (324)
232 3trf_A Shikimate kinase, SK; a 97.2 0.00019 6.6E-09 59.1 3.6 26 259-284 4-29 (185)
233 2v54_A DTMP kinase, thymidylat 97.2 0.00021 7.3E-09 59.8 3.9 27 258-284 2-28 (204)
234 1jal_A YCHF protein; nucleotid 97.2 0.00029 1E-08 64.5 4.9 36 260-295 2-48 (363)
235 1gvn_B Zeta; postsegregational 97.2 0.00021 7.3E-09 63.5 4.0 35 259-295 32-66 (287)
236 1kht_A Adenylate kinase; phosp 97.2 0.00021 7.1E-09 59.1 3.6 25 260-284 3-27 (192)
237 2rhm_A Putative kinase; P-loop 97.2 0.00021 7.1E-09 59.2 3.4 27 258-284 3-29 (193)
238 3iij_A Coilin-interacting nucl 97.2 0.00016 5.6E-09 59.4 2.7 27 258-284 9-35 (180)
239 1fzq_A ADP-ribosylation factor 97.2 0.00021 7.1E-09 58.7 3.3 38 260-297 16-61 (181)
240 1q3t_A Cytidylate kinase; nucl 97.2 0.00023 7.9E-09 61.3 3.6 26 257-282 13-38 (236)
241 3lxx_A GTPase IMAP family memb 97.1 0.00028 9.5E-09 60.9 4.1 28 262-289 31-58 (239)
242 1ko7_A HPR kinase/phosphatase; 97.1 0.00028 9.4E-09 63.1 3.9 33 249-282 134-166 (314)
243 1vht_A Dephospho-COA kinase; s 97.1 0.00026 9.1E-09 60.0 3.6 24 259-282 3-26 (218)
244 3qkt_A DNA double-strand break 97.1 0.00033 1.1E-08 63.9 4.2 34 252-286 16-50 (339)
245 1nn5_A Similar to deoxythymidy 97.1 0.00034 1.1E-08 59.1 3.7 27 257-283 6-32 (215)
246 3lw7_A Adenylate kinase relate 97.0 0.0003 1E-08 57.1 3.2 20 261-280 2-21 (179)
247 2wwf_A Thymidilate kinase, put 97.0 0.00035 1.2E-08 58.8 3.7 26 258-283 8-33 (212)
248 1v5w_A DMC1, meiotic recombina 97.0 0.0002 6.9E-09 65.4 2.3 41 256-296 118-165 (343)
249 2c95_A Adenylate kinase 1; tra 97.0 0.00035 1.2E-08 58.0 3.6 27 258-284 7-33 (196)
250 2plr_A DTMP kinase, probable t 97.0 0.00036 1.2E-08 58.7 3.6 28 259-286 3-30 (213)
251 3kl4_A SRP54, signal recogniti 97.0 0.00019 6.6E-09 67.3 1.9 41 259-299 96-136 (433)
252 1via_A Shikimate kinase; struc 97.0 0.00031 1E-08 57.4 2.9 23 262-284 6-28 (175)
253 2r6a_A DNAB helicase, replicat 97.0 0.00017 5.8E-09 68.6 1.2 47 249-295 192-239 (454)
254 2vli_A Antibiotic resistance p 96.9 0.00029 1E-08 57.8 2.2 27 258-284 3-29 (183)
255 1xjc_A MOBB protein homolog; s 96.9 0.00032 1.1E-08 56.9 2.3 36 261-296 5-43 (169)
256 2ze6_A Isopentenyl transferase 96.9 0.00039 1.3E-08 60.6 3.0 24 261-284 2-25 (253)
257 2bwj_A Adenylate kinase 5; pho 96.9 0.00021 7.3E-09 59.5 1.1 29 256-284 8-36 (199)
258 1ly1_A Polynucleotide kinase; 96.9 0.00054 1.9E-08 55.9 3.3 22 261-282 3-24 (181)
259 3cf0_A Transitional endoplasmi 96.8 0.00052 1.8E-08 61.4 3.2 41 254-296 43-83 (301)
260 3cbq_A GTP-binding protein REM 96.8 0.00051 1.7E-08 57.2 2.8 22 262-283 25-46 (195)
261 1tev_A UMP-CMP kinase; ploop, 96.8 0.00061 2.1E-08 56.4 3.3 25 260-284 3-27 (196)
262 2erx_A GTP-binding protein DI- 96.8 0.0011 3.9E-08 53.1 4.9 21 262-282 5-25 (172)
263 1nks_A Adenylate kinase; therm 96.8 0.00062 2.1E-08 56.2 3.3 24 262-285 3-26 (194)
264 2lkc_A Translation initiation 96.8 0.0017 5.7E-08 52.6 5.8 25 258-282 6-30 (178)
265 1aky_A Adenylate kinase; ATP:A 96.8 0.00074 2.5E-08 57.3 3.7 27 258-284 2-28 (220)
266 1zd8_A GTP:AMP phosphotransfer 96.8 0.00062 2.1E-08 58.1 3.0 27 258-284 5-31 (227)
267 2cdn_A Adenylate kinase; phosp 96.8 0.00088 3E-08 56.0 3.7 25 260-284 20-44 (201)
268 3fb4_A Adenylate kinase; psych 96.8 0.00075 2.6E-08 57.0 3.3 23 262-284 2-24 (216)
269 1ukz_A Uridylate kinase; trans 96.7 0.0007 2.4E-08 56.6 3.1 26 259-284 14-39 (203)
270 1a7j_A Phosphoribulokinase; tr 96.7 0.00043 1.5E-08 61.6 1.8 26 259-284 4-29 (290)
271 3lxw_A GTPase IMAP family memb 96.7 0.00079 2.7E-08 58.4 3.4 24 261-284 22-45 (247)
272 2iyv_A Shikimate kinase, SK; t 96.7 0.00073 2.5E-08 55.5 3.0 24 261-284 3-26 (184)
273 1zak_A Adenylate kinase; ATP:A 96.7 0.00077 2.6E-08 57.3 3.2 26 259-284 4-29 (222)
274 3dl0_A Adenylate kinase; phosp 96.7 0.00068 2.3E-08 57.3 2.9 23 262-284 2-24 (216)
275 2grj_A Dephospho-COA kinase; T 96.7 0.00084 2.9E-08 55.8 3.3 24 260-283 12-35 (192)
276 3ake_A Cytidylate kinase; CMP 96.7 0.00079 2.7E-08 56.4 3.2 23 262-284 4-26 (208)
277 1e6c_A Shikimate kinase; phosp 96.7 0.00081 2.8E-08 54.6 3.1 24 261-284 3-26 (173)
278 2z0h_A DTMP kinase, thymidylat 96.7 0.00087 3E-08 55.6 3.3 23 262-284 2-24 (197)
279 1zuh_A Shikimate kinase; alpha 96.7 0.00093 3.2E-08 54.0 3.4 24 260-283 7-30 (168)
280 2ew1_A RAS-related protein RAB 96.7 0.0016 5.6E-08 54.4 5.0 21 262-282 28-48 (201)
281 2pt5_A Shikimate kinase, SK; a 96.7 0.00092 3.1E-08 54.0 3.4 23 262-284 2-24 (168)
282 1qf9_A UMP/CMP kinase, protein 96.7 0.0009 3.1E-08 55.2 3.3 25 260-284 6-30 (194)
283 1z2a_A RAS-related protein RAB 96.7 0.00089 3E-08 53.6 3.2 22 262-283 7-28 (168)
284 3a8t_A Adenylate isopentenyltr 96.7 0.0011 3.8E-08 59.8 4.0 28 258-285 38-65 (339)
285 2fn4_A P23, RAS-related protei 96.7 0.0012 4.3E-08 53.5 4.1 22 262-283 11-32 (181)
286 3q72_A GTP-binding protein RAD 96.7 0.00083 2.8E-08 53.8 2.9 24 262-285 4-27 (166)
287 1z0j_A RAB-22, RAS-related pro 96.7 0.0014 4.7E-08 52.6 4.2 23 262-284 8-30 (170)
288 3tlx_A Adenylate kinase 2; str 96.7 0.001 3.5E-08 57.5 3.5 27 258-284 27-53 (243)
289 3iby_A Ferrous iron transport 96.7 0.0011 3.6E-08 57.9 3.7 23 262-284 3-25 (256)
290 2nzj_A GTP-binding protein REM 96.6 0.0011 3.8E-08 53.5 3.4 23 262-284 6-28 (175)
291 3k53_A Ferrous iron transport 96.6 0.00099 3.4E-08 58.6 3.2 24 262-285 5-28 (271)
292 3q85_A GTP-binding protein REM 96.6 0.0012 3.9E-08 53.1 3.4 23 262-284 4-26 (169)
293 1uj2_A Uridine-cytidine kinase 96.6 0.0011 3.6E-08 57.7 3.3 24 261-284 23-46 (252)
294 2pbr_A DTMP kinase, thymidylat 96.6 0.0011 3.9E-08 54.7 3.4 23 262-284 2-24 (195)
295 3t5d_A Septin-7; GTP-binding p 96.6 0.00091 3.1E-08 58.9 2.9 22 262-283 10-31 (274)
296 2ged_A SR-beta, signal recogni 96.6 0.0011 3.7E-08 54.7 3.2 25 260-284 48-72 (193)
297 1kao_A RAP2A; GTP-binding prot 96.6 0.0011 3.8E-08 52.9 3.2 22 262-283 5-26 (167)
298 2ce2_X GTPase HRAS; signaling 96.6 0.0011 3.7E-08 52.8 3.1 22 262-283 5-26 (166)
299 2oil_A CATX-8, RAS-related pro 96.6 0.0016 5.6E-08 53.7 4.2 21 262-282 27-47 (193)
300 2f6r_A COA synthase, bifunctio 96.6 0.0012 4E-08 58.5 3.5 23 260-282 75-97 (281)
301 3t1o_A Gliding protein MGLA; G 96.6 0.0012 4.2E-08 54.4 3.3 25 262-286 16-40 (198)
302 1u8z_A RAS-related protein RAL 96.6 0.0012 4.1E-08 52.7 3.2 22 262-283 6-27 (168)
303 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0019 6.6E-08 52.8 4.5 22 262-283 9-30 (184)
304 1g16_A RAS-related protein SEC 96.6 0.0012 4E-08 53.0 3.1 22 262-283 5-26 (170)
305 2dyk_A GTP-binding protein; GT 96.6 0.0012 4.2E-08 52.4 3.2 23 262-284 3-25 (161)
306 1c1y_A RAS-related protein RAP 96.6 0.0012 4.2E-08 52.7 3.2 21 262-282 5-25 (167)
307 2qmh_A HPR kinase/phosphorylas 96.6 0.0017 5.8E-08 53.8 4.0 35 249-284 24-58 (205)
308 1z08_A RAS-related protein RAB 96.6 0.0013 4.3E-08 52.9 3.2 22 262-283 8-29 (170)
309 1ksh_A ARF-like protein 2; sma 96.5 0.0028 9.7E-08 51.8 5.4 32 258-289 16-51 (186)
310 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0013 4.5E-08 57.4 3.5 26 258-283 2-27 (260)
311 3clv_A RAB5 protein, putative; 96.5 0.0017 5.8E-08 53.7 4.0 23 261-283 8-30 (208)
312 1ek0_A Protein (GTP-binding pr 96.5 0.0013 4.5E-08 52.7 3.2 22 262-283 5-26 (170)
313 1svi_A GTP-binding protein YSX 96.5 0.0013 4.4E-08 54.3 3.2 25 259-283 22-46 (195)
314 2ce7_A Cell division protein F 96.5 0.00066 2.3E-08 64.6 1.5 35 249-285 40-74 (476)
315 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0026 8.9E-08 53.1 5.0 22 262-283 10-31 (206)
316 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0014 4.6E-08 53.1 3.2 22 262-283 9-30 (177)
317 1ky3_A GTP-binding protein YPT 96.5 0.0014 4.6E-08 53.3 3.2 22 262-283 10-31 (182)
318 3pqc_A Probable GTP-binding pr 96.5 0.0014 4.7E-08 54.0 3.2 24 261-284 24-47 (195)
319 3b1v_A Ferrous iron uptake tra 96.5 0.0014 4.8E-08 57.7 3.4 24 261-284 4-27 (272)
320 3auy_A DNA double-strand break 96.5 0.0019 6.4E-08 59.6 4.3 31 250-281 16-46 (371)
321 4fcw_A Chaperone protein CLPB; 96.5 0.0011 3.7E-08 59.4 2.6 36 260-295 47-83 (311)
322 3tw8_B RAS-related protein RAB 96.5 0.0014 4.6E-08 53.3 3.0 22 262-283 11-32 (181)
323 3llm_A ATP-dependent RNA helic 96.5 0.0011 3.7E-08 57.0 2.5 25 257-281 73-97 (235)
324 3t5g_A GTP-binding protein RHE 96.5 0.0026 9E-08 51.7 4.7 20 262-281 8-27 (181)
325 1r2q_A RAS-related protein RAB 96.5 0.0015 5.3E-08 52.2 3.2 21 262-282 8-28 (170)
326 3be4_A Adenylate kinase; malar 96.5 0.0016 5.4E-08 55.2 3.4 26 259-284 4-29 (217)
327 2cxx_A Probable GTP-binding pr 96.4 0.0016 5.4E-08 53.4 3.2 23 262-284 3-25 (190)
328 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0016 5.5E-08 53.3 3.2 22 262-283 6-27 (189)
329 1wf3_A GTP-binding protein; GT 96.4 0.0016 5.5E-08 58.2 3.4 22 262-283 9-30 (301)
330 1r8s_A ADP-ribosylation factor 96.4 0.0017 5.7E-08 51.8 3.2 21 262-282 2-22 (164)
331 1ypw_A Transitional endoplasmi 96.4 0.00023 7.9E-09 72.5 -2.5 62 253-316 504-565 (806)
332 3n70_A Transport activator; si 96.4 0.0025 8.5E-08 50.2 4.1 38 258-295 22-59 (145)
333 3exa_A TRNA delta(2)-isopenten 96.4 0.002 6.7E-08 57.5 3.7 26 260-285 3-28 (322)
334 3bc1_A RAS-related protein RAB 96.4 0.0017 5.8E-08 53.3 3.2 21 262-282 13-33 (195)
335 2hxs_A RAB-26, RAS-related pro 96.4 0.0019 6.4E-08 52.3 3.4 22 262-283 8-29 (178)
336 2h57_A ADP-ribosylation factor 96.4 0.0013 4.4E-08 54.2 2.4 24 261-284 22-45 (190)
337 2y8e_A RAB-protein 6, GH09086P 96.4 0.0018 6E-08 52.5 3.1 21 262-282 16-36 (179)
338 2g6b_A RAS-related protein RAB 96.4 0.0018 6.2E-08 52.5 3.2 22 262-283 12-33 (180)
339 1upt_A ARL1, ADP-ribosylation 96.4 0.0018 6.3E-08 51.9 3.2 24 259-282 6-29 (171)
340 1gwn_A RHO-related GTP-binding 96.4 0.0029 9.9E-08 53.0 4.5 22 262-283 30-51 (205)
341 2gf0_A GTP-binding protein DI- 96.4 0.003 1E-07 52.1 4.5 22 261-282 9-30 (199)
342 3d3q_A TRNA delta(2)-isopenten 96.4 0.0016 5.6E-08 58.8 3.0 25 261-285 8-32 (340)
343 2xtp_A GTPase IMAP family memb 96.3 0.0019 6.4E-08 56.3 3.3 24 261-284 23-46 (260)
344 3con_A GTPase NRAS; structural 96.3 0.0019 6.6E-08 53.0 3.2 22 262-283 23-44 (190)
345 2efe_B Small GTP-binding prote 96.3 0.002 7E-08 52.3 3.2 22 262-283 14-35 (181)
346 1z0f_A RAB14, member RAS oncog 96.3 0.002 7E-08 52.1 3.2 22 262-283 17-38 (179)
347 2fv8_A H6, RHO-related GTP-bin 96.3 0.0012 3.9E-08 55.4 1.7 33 251-283 16-48 (207)
348 4bas_A ADP-ribosylation factor 96.3 0.0026 9E-08 52.5 3.9 30 260-289 17-52 (199)
349 3tmk_A Thymidylate kinase; pho 96.3 0.0023 7.8E-08 54.2 3.5 29 258-286 3-31 (216)
350 1e4v_A Adenylate kinase; trans 96.3 0.002 7E-08 54.3 3.2 23 262-284 2-24 (214)
351 3llu_A RAS-related GTP-binding 96.3 0.0023 7.9E-08 53.0 3.4 25 261-285 21-45 (196)
352 2a9k_A RAS-related protein RAL 96.3 0.0021 7.3E-08 52.4 3.2 21 262-282 20-40 (187)
353 3reg_A RHO-like small GTPase; 96.3 0.0036 1.2E-07 51.6 4.6 22 262-283 25-46 (194)
354 3tqf_A HPR(Ser) kinase; transf 96.3 0.0032 1.1E-07 50.9 4.0 26 257-282 13-38 (181)
355 2h92_A Cytidylate kinase; ross 96.3 0.0018 6E-08 54.8 2.6 25 260-284 3-27 (219)
356 2bme_A RAB4A, RAS-related prot 96.3 0.0021 7.3E-08 52.4 3.1 22 262-283 12-33 (186)
357 2cjw_A GTP-binding protein GEM 96.3 0.0022 7.6E-08 53.1 3.2 21 262-282 8-28 (192)
358 2w58_A DNAI, primosome compone 96.3 0.0022 7.6E-08 53.4 3.2 31 261-291 55-85 (202)
359 2gf9_A RAS-related protein RAB 96.3 0.0023 7.7E-08 52.6 3.2 22 262-283 24-45 (189)
360 3zvl_A Bifunctional polynucleo 96.3 0.0024 8.3E-08 59.8 3.7 39 256-298 254-292 (416)
361 3bos_A Putative DNA replicatio 96.3 0.0017 5.9E-08 55.4 2.5 27 259-285 51-77 (242)
362 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0011 3.9E-08 62.4 1.3 44 249-293 141-184 (473)
363 3oes_A GTPase rhebl1; small GT 96.2 0.0023 7.8E-08 53.3 3.1 25 260-284 24-48 (201)
364 2fg5_A RAB-22B, RAS-related pr 96.2 0.0023 7.8E-08 52.8 3.1 28 262-289 25-57 (192)
365 1ak2_A Adenylate kinase isoenz 96.2 0.0029 9.8E-08 54.2 3.8 26 259-284 15-40 (233)
366 1vg8_A RAS-related protein RAB 96.2 0.0023 8E-08 53.3 3.2 22 262-283 10-31 (207)
367 2bov_A RAla, RAS-related prote 96.2 0.0024 8.1E-08 53.1 3.2 22 262-283 16-37 (206)
368 3i8s_A Ferrous iron transport 96.2 0.0023 8E-08 56.3 3.3 24 261-284 4-27 (274)
369 3v9p_A DTMP kinase, thymidylat 96.2 0.0022 7.5E-08 54.7 2.9 28 258-285 23-50 (227)
370 1z06_A RAS-related protein RAB 96.2 0.0024 8.3E-08 52.4 3.2 21 262-282 22-42 (189)
371 2xb4_A Adenylate kinase; ATP-b 96.2 0.0026 8.7E-08 54.2 3.4 23 262-284 2-24 (223)
372 3iev_A GTP-binding protein ERA 96.2 0.0025 8.4E-08 57.2 3.4 24 260-283 10-33 (308)
373 1moz_A ARL1, ADP-ribosylation 96.2 0.0016 5.5E-08 53.1 2.0 24 259-282 17-40 (183)
374 3kkq_A RAS-related protein M-R 96.2 0.0035 1.2E-07 51.1 4.0 21 262-282 20-40 (183)
375 1zbd_A Rabphilin-3A; G protein 96.2 0.0027 9.2E-08 52.8 3.4 22 262-283 10-31 (203)
376 3dz8_A RAS-related protein RAB 96.2 0.0025 8.6E-08 52.5 3.1 23 262-284 25-47 (191)
377 1nrj_B SR-beta, signal recogni 96.2 0.0025 8.7E-08 53.6 3.2 24 261-284 13-36 (218)
378 2il1_A RAB12; G-protein, GDP, 96.2 0.0024 8.3E-08 52.7 3.0 22 262-283 28-49 (192)
379 3bwd_D RAC-like GTP-binding pr 96.2 0.0031 1.1E-07 51.2 3.6 25 259-283 7-31 (182)
380 2qu8_A Putative nucleolar GTP- 96.2 0.0025 8.7E-08 54.2 3.2 24 260-283 29-52 (228)
381 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0027 9.4E-08 51.7 3.2 21 262-282 7-27 (186)
382 1fnn_A CDC6P, cell division co 96.2 0.003 1E-07 58.3 3.7 38 258-295 40-81 (389)
383 3cnl_A YLQF, putative uncharac 96.2 0.0032 1.1E-07 55.1 3.7 30 261-290 100-129 (262)
384 2o52_A RAS-related protein RAB 96.2 0.0029 9.8E-08 52.7 3.3 22 262-283 27-48 (200)
385 3tkl_A RAS-related protein RAB 96.2 0.0038 1.3E-07 51.4 4.0 22 262-283 18-39 (196)
386 4edh_A DTMP kinase, thymidylat 96.2 0.0031 1.1E-07 53.3 3.5 28 258-285 4-31 (213)
387 2a5j_A RAS-related protein RAB 96.1 0.0028 9.6E-08 52.2 3.2 22 262-283 23-44 (191)
388 3ld9_A DTMP kinase, thymidylat 96.1 0.0032 1.1E-07 53.5 3.6 28 258-285 19-46 (223)
389 3crm_A TRNA delta(2)-isopenten 96.1 0.0026 8.8E-08 57.2 3.1 25 261-285 6-30 (323)
390 3lv8_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 53.9 3.7 27 259-285 26-52 (236)
391 1zj6_A ADP-ribosylation factor 96.1 0.0031 1.1E-07 51.7 3.3 24 259-282 15-38 (187)
392 2h17_A ADP-ribosylation factor 96.1 0.0027 9.3E-08 51.8 2.9 21 262-282 23-43 (181)
393 4dhe_A Probable GTP-binding pr 96.1 0.0013 4.6E-08 55.6 1.0 25 260-284 29-53 (223)
394 3def_A T7I23.11 protein; chlor 96.1 0.003 1E-07 55.2 3.3 23 262-284 38-60 (262)
395 3a1s_A Iron(II) transport prot 96.1 0.0031 1.1E-07 55.0 3.3 23 262-284 7-29 (258)
396 2ocp_A DGK, deoxyguanosine kin 96.1 0.0028 9.6E-08 54.6 3.0 27 259-285 1-27 (241)
397 1jbk_A CLPB protein; beta barr 96.1 0.0036 1.2E-07 51.1 3.6 27 258-284 41-67 (195)
398 3r7w_A Gtpase1, GTP-binding pr 96.1 0.0034 1.2E-07 56.2 3.6 27 258-284 1-27 (307)
399 1zd9_A ADP-ribosylation factor 96.1 0.0032 1.1E-07 51.7 3.2 21 262-282 24-44 (188)
400 1h65_A Chloroplast outer envel 96.1 0.0031 1.1E-07 55.3 3.3 23 262-284 41-63 (270)
401 3foz_A TRNA delta(2)-isopenten 96.1 0.0032 1.1E-07 56.0 3.3 26 260-285 10-35 (316)
402 2wsm_A Hydrogenase expression/ 96.1 0.0031 1.1E-07 53.3 3.1 23 261-283 31-53 (221)
403 2atv_A RERG, RAS-like estrogen 96.1 0.0032 1.1E-07 52.1 3.2 23 261-283 29-51 (196)
404 4tmk_A Protein (thymidylate ki 96.1 0.0039 1.3E-07 52.7 3.7 28 259-286 2-29 (213)
405 2p5s_A RAS and EF-hand domain 96.1 0.0033 1.1E-07 52.2 3.2 24 260-283 28-51 (199)
406 1p5z_B DCK, deoxycytidine kina 96.0 0.0022 7.5E-08 56.0 2.1 28 258-285 22-49 (263)
407 3cph_A RAS-related protein SEC 96.0 0.0033 1.1E-07 52.6 3.2 23 261-283 21-43 (213)
408 2j1l_A RHO-related GTP-binding 96.0 0.0034 1.2E-07 52.8 3.3 21 262-282 36-56 (214)
409 2aka_B Dynamin-1; fusion prote 96.0 0.0032 1.1E-07 55.9 3.2 23 262-284 28-50 (299)
410 1x3s_A RAS-related protein RAB 96.0 0.0035 1.2E-07 51.5 3.2 22 262-283 17-38 (195)
411 3c5c_A RAS-like protein 12; GD 96.0 0.0035 1.2E-07 51.5 3.2 29 262-290 23-56 (187)
412 1jwy_B Dynamin A GTPase domain 96.0 0.0033 1.1E-07 56.3 3.2 23 262-284 26-48 (315)
413 2f7s_A C25KG, RAS-related prot 96.0 0.0038 1.3E-07 52.5 3.4 22 262-283 27-48 (217)
414 2gco_A H9, RHO-related GTP-bin 96.0 0.0035 1.2E-07 52.2 3.1 22 262-283 27-48 (201)
415 2q3h_A RAS homolog gene family 96.0 0.0039 1.3E-07 51.7 3.4 24 260-283 20-43 (201)
416 2iwr_A Centaurin gamma 1; ANK 96.0 0.0027 9.1E-08 51.5 2.3 23 261-283 8-30 (178)
417 3b9p_A CG5977-PA, isoform A; A 96.0 0.0041 1.4E-07 55.3 3.7 28 258-285 52-79 (297)
418 2g3y_A GTP-binding protein GEM 96.0 0.0039 1.3E-07 52.6 3.4 23 261-283 38-60 (211)
419 4gzl_A RAS-related C3 botulinu 96.0 0.0063 2.2E-07 50.7 4.6 23 260-282 30-52 (204)
420 3q3j_B RHO-related GTP-binding 96.0 0.0052 1.8E-07 51.8 4.1 30 261-290 28-62 (214)
421 2qby_A CDC6 homolog 1, cell di 96.0 0.0021 7.3E-08 59.0 1.8 38 258-295 43-84 (386)
422 3umf_A Adenylate kinase; rossm 96.0 0.0026 8.8E-08 53.9 2.1 30 255-284 24-53 (217)
423 1ltq_A Polynucleotide kinase; 96.0 0.0037 1.3E-07 55.6 3.3 22 261-282 3-24 (301)
424 4dcu_A GTP-binding protein ENG 95.9 0.0031 1.1E-07 59.9 2.8 22 262-283 25-46 (456)
425 2fh5_B SR-beta, signal recogni 95.9 0.0053 1.8E-07 51.5 4.0 24 260-283 7-30 (214)
426 2e87_A Hypothetical protein PH 95.9 0.0041 1.4E-07 57.0 3.3 25 260-284 167-191 (357)
427 2fu5_C RAS-related protein RAB 95.9 0.0026 8.9E-08 51.8 1.8 22 262-283 10-31 (183)
428 1l8q_A Chromosomal replication 95.9 0.0026 8.9E-08 57.4 1.9 28 259-286 36-63 (324)
429 2atx_A Small GTP binding prote 95.9 0.0044 1.5E-07 51.1 3.1 22 262-283 20-41 (194)
430 2hf9_A Probable hydrogenase ni 95.8 0.0045 1.5E-07 52.4 3.1 23 261-283 39-61 (226)
431 3eph_A TRNA isopentenyltransfe 95.8 0.0049 1.7E-07 56.9 3.3 26 260-285 2-27 (409)
432 2p65_A Hypothetical protein PF 95.8 0.0044 1.5E-07 50.4 2.7 28 258-285 41-68 (187)
433 2zts_A Putative uncharacterize 95.8 0.0063 2.2E-07 52.3 3.8 26 256-281 26-51 (251)
434 2b6h_A ADP-ribosylation factor 95.8 0.0051 1.8E-07 50.7 3.1 25 258-282 27-51 (192)
435 3h4m_A Proteasome-activating n 95.8 0.0058 2E-07 53.9 3.6 29 257-285 48-76 (285)
436 2hup_A RAS-related protein RAB 95.7 0.0053 1.8E-07 51.1 3.1 22 262-283 31-52 (201)
437 2i1q_A DNA repair and recombin 95.7 0.0058 2E-07 55.1 3.5 27 256-282 94-120 (322)
438 3bh0_A DNAB-like replicative h 95.7 0.0041 1.4E-07 55.9 2.5 34 249-282 57-90 (315)
439 4djt_A GTP-binding nuclear pro 95.7 0.0023 8E-08 53.9 0.8 22 262-283 13-34 (218)
440 1puj_A YLQF, conserved hypothe 95.7 0.0075 2.6E-07 53.3 4.1 30 260-289 120-149 (282)
441 1u94_A RECA protein, recombina 95.7 0.0044 1.5E-07 56.7 2.6 46 249-295 50-99 (356)
442 2x77_A ADP-ribosylation factor 95.7 0.0038 1.3E-07 51.2 2.0 24 259-282 21-44 (189)
443 1g8f_A Sulfate adenylyltransfe 95.6 0.0053 1.8E-07 58.7 3.1 29 258-286 393-421 (511)
444 3cpj_B GTP-binding protein YPT 95.6 0.0061 2.1E-07 51.6 3.2 22 262-283 15-36 (223)
445 4a1f_A DNAB helicase, replicat 95.6 0.005 1.7E-07 55.8 2.7 58 249-309 35-92 (338)
446 2v3c_C SRP54, signal recogniti 95.6 0.0021 7.3E-08 60.4 0.1 36 260-295 99-134 (432)
447 3ec1_A YQEH GTPase; atnos1, at 95.5 0.0063 2.2E-07 56.0 3.1 25 259-283 161-185 (369)
448 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.008 2.7E-07 52.1 3.6 27 258-284 37-63 (262)
449 2r62_A Cell division protease 95.5 0.0023 7.8E-08 56.0 0.0 32 250-283 36-67 (268)
450 2yc2_C IFT27, small RAB-relate 95.5 0.003 1E-07 52.5 0.8 22 262-283 22-43 (208)
451 1mky_A Probable GTP-binding pr 95.5 0.012 4E-07 55.5 4.9 36 262-297 3-50 (439)
452 2j0v_A RAC-like GTP-binding pr 95.5 0.0073 2.5E-07 50.5 3.1 22 261-282 10-31 (212)
453 3h2y_A GTPase family protein; 95.5 0.0065 2.2E-07 55.9 2.9 26 259-284 159-184 (368)
454 1lnz_A SPO0B-associated GTP-bi 95.5 0.0096 3.3E-07 54.1 4.0 45 251-295 149-204 (342)
455 1m8p_A Sulfate adenylyltransfe 95.4 0.008 2.7E-07 58.6 3.4 37 259-296 395-434 (573)
456 3l0o_A Transcription terminati 95.3 0.0055 1.9E-07 56.1 1.8 52 232-284 137-199 (427)
457 4dkx_A RAS-related protein RAB 95.3 0.012 4E-07 49.8 3.8 28 262-289 15-47 (216)
458 3dm5_A SRP54, signal recogniti 95.2 0.0084 2.9E-07 56.2 2.9 35 259-293 99-133 (443)
459 2hjg_A GTP-binding protein ENG 95.2 0.0082 2.8E-07 56.6 2.9 22 262-283 5-26 (436)
460 1x6v_B Bifunctional 3'-phospho 95.2 0.01 3.5E-07 58.2 3.5 40 259-298 51-91 (630)
461 1njg_A DNA polymerase III subu 95.2 0.013 4.3E-07 49.7 3.7 35 250-284 32-69 (250)
462 1wxq_A GTP-binding protein; st 95.2 0.01 3.5E-07 55.1 3.3 23 262-284 2-24 (397)
463 3uk6_A RUVB-like 2; hexameric 95.2 0.013 4.5E-07 53.6 4.0 41 257-297 67-107 (368)
464 4hlc_A DTMP kinase, thymidylat 95.2 0.012 4.2E-07 49.2 3.4 26 260-285 2-27 (205)
465 3geh_A MNME, tRNA modification 95.1 0.0069 2.4E-07 57.4 2.0 46 258-303 222-279 (462)
466 3sr0_A Adenylate kinase; phosp 95.1 0.0082 2.8E-07 50.4 2.2 24 262-285 2-25 (206)
467 1tue_A Replication protein E1; 95.1 0.0092 3.1E-07 49.7 2.4 29 256-284 54-82 (212)
468 3syl_A Protein CBBX; photosynt 95.1 0.013 4.4E-07 52.2 3.5 26 259-284 66-91 (309)
469 2x2e_A Dynamin-1; nitration, h 95.1 0.0075 2.6E-07 55.1 2.0 23 262-284 33-55 (353)
470 4i1u_A Dephospho-COA kinase; s 95.0 0.013 4.3E-07 49.2 3.1 21 262-282 11-31 (210)
471 2orw_A Thymidine kinase; TMTK, 95.0 0.011 3.6E-07 48.7 2.6 25 259-283 2-27 (184)
472 2axn_A 6-phosphofructo-2-kinas 95.0 0.0048 1.6E-07 59.5 0.5 26 259-284 34-59 (520)
473 3hws_A ATP-dependent CLP prote 95.0 0.011 3.7E-07 54.2 2.8 25 260-284 51-75 (363)
474 3gj0_A GTP-binding nuclear pro 95.0 0.0087 3E-07 50.5 2.0 28 262-289 17-49 (221)
475 3th5_A RAS-related C3 botulinu 94.0 0.0042 1.4E-07 51.7 0.0 23 260-282 30-52 (204)
476 2q6t_A DNAB replication FORK h 95.0 0.014 4.9E-07 55.1 3.7 37 249-285 189-225 (444)
477 2iut_A DNA translocase FTSK; n 95.0 0.023 7.8E-07 54.9 5.1 42 252-293 206-251 (574)
478 1zcb_A G alpha I/13; GTP-bindi 95.0 0.011 3.8E-07 54.2 2.7 29 258-286 31-59 (362)
479 3io5_A Recombination and repai 94.9 0.0091 3.1E-07 53.3 2.1 38 257-295 26-66 (333)
480 3co5_A Putative two-component 94.9 0.0083 2.9E-07 47.0 1.7 28 258-285 25-52 (143)
481 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.013 4.5E-07 52.4 3.1 29 255-283 118-146 (331)
482 1sxj_D Activator 1 41 kDa subu 94.9 0.0072 2.5E-07 54.9 1.5 37 249-285 45-83 (353)
483 3l0i_B RAS-related protein RAB 94.9 0.0028 9.5E-08 52.6 -1.3 22 262-283 35-56 (199)
484 1xp8_A RECA protein, recombina 94.9 0.011 3.8E-07 54.2 2.5 28 256-283 70-97 (366)
485 2bjv_A PSP operon transcriptio 94.9 0.025 8.5E-07 49.2 4.7 37 258-294 27-64 (265)
486 2ck3_D ATP synthase subunit be 94.9 0.02 6.7E-07 53.9 4.1 31 254-284 147-177 (482)
487 3p32_A Probable GTPase RV1496/ 94.8 0.013 4.5E-07 53.5 2.9 26 259-284 78-103 (355)
488 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.018 6E-07 51.9 3.6 28 257-284 42-69 (322)
489 3gee_A MNME, tRNA modification 94.8 0.01 3.6E-07 56.4 2.2 44 259-302 232-287 (476)
490 2qpt_A EH domain-containing pr 94.8 0.015 5E-07 56.5 3.2 24 261-284 66-89 (550)
491 2hjg_A GTP-binding protein ENG 94.7 0.016 5.5E-07 54.5 3.4 24 261-284 176-199 (436)
492 2j69_A Bacterial dynamin-like 94.7 0.016 5.5E-07 57.9 3.4 28 257-284 66-93 (695)
493 2chg_A Replication factor C sm 94.7 0.017 5.9E-07 48.1 3.2 22 262-283 40-61 (226)
494 1d2n_A N-ethylmaleimide-sensit 94.7 0.015 5.2E-07 50.8 2.9 28 257-284 61-88 (272)
495 3gmt_A Adenylate kinase; ssgci 94.7 0.019 6.6E-07 48.8 3.4 25 260-284 8-32 (230)
496 4a9a_A Ribosome-interacting GT 94.7 0.015 5.1E-07 53.4 2.8 37 262-298 74-121 (376)
497 1knx_A Probable HPR(Ser) kinas 94.7 0.027 9.2E-07 50.2 4.3 33 249-282 137-169 (312)
498 3fdi_A Uncharacterized protein 94.6 0.021 7.1E-07 47.6 3.5 25 260-284 6-30 (201)
499 1f5n_A Interferon-induced guan 94.6 0.015 5.3E-07 56.6 3.0 49 233-284 14-62 (592)
500 1xzp_A Probable tRNA modificat 94.6 0.0056 1.9E-07 58.3 -0.1 40 259-298 242-293 (482)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.8e-62 Score=521.64 Aligned_cols=365 Identities=17% Similarity=0.205 Sum_probs=308.2
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++|||++++|++++|+++|++.+++++...+..++..++.++++++++++++|.++++++..+++..++...+.++.++.
T Consensus 184 ~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~ 263 (1321)
T 4f4c_A 184 ISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTF 263 (1321)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999888777777777777777777777
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--I 158 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~ 158 (367)
.++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..............+..+...++.++ .
T Consensus 264 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 343 (1321)
T 4f4c_A 264 AIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVG 343 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788889999999999999999999999999999988887776655554444444433333333333322222 2
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
.+..|.+++|.+.+++.+...+..++..+...+..++++.++++|+.++++.+++.+...+. ...+.+..++|+|+||
T Consensus 344 ~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~~~nv 421 (1321)
T 4f4c_A 344 WVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKA--GRKDMKIKGDITVENV 421 (1321)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSC--CCCCCCCCCCEEEEEE
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--cccCCCCCCcEEEEEe
Confidence 22348889998888888888888888889999999999999999999999876543221111 1111234578999999
Q ss_pred EEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 239 sf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
+|+||.. +.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|||
T Consensus 422 sF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 422 HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp EECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred eeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence 9999753 456999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 318 ~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+||++||||||+++. ++++|++++||+.|++++||+.||+||||+|||+|
T Consensus 502 ~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 502 ALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred eeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 999999999999885 58999999999999999999999999999999998
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.5e-61 Score=511.74 Aligned_cols=364 Identities=18% Similarity=0.225 Sum_probs=283.8
Q ss_pred Cccccc--CChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDS--TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAR 78 (367)
Q Consensus 1 ~~~f~~--~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 78 (367)
++|||. +++|++++|+++|++.++..++..+..++..++.+++.++++++++|.+++++++++++..+....+.++..
T Consensus 842 ~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~ 921 (1321)
T 4f4c_A 842 IGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFT 921 (1321)
T ss_dssp SSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred chhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579985 789999999999999999999999999999999999999999999999988877777666666555554444
Q ss_pred HHHhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017723 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (367)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (367)
....+..+..++...++.|+++|+++||+|++|+++.++|.+..+...+...+......+.......+..+....+.++.
T Consensus 922 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 1001 (1321)
T 4f4c_A 922 GKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMG 1001 (1321)
T ss_dssp SCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555666778889999999999999999999999999988877766555444443333332222222222222222
Q ss_pred HH--hCCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEE
Q 017723 159 VL--LPGKHLPGF--VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIE 234 (367)
Q Consensus 159 ~~--~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 234 (367)
.. ..+..+.+. +...+.+......++..+...+..+.++..+.+|+.++++.+++.+.. ..+.+.++..++|+
T Consensus 1002 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~~~~~~~~~g~I~ 1078 (1321)
T 4f4c_A 1002 LALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSL---SLAGEKKKLYGKVI 1078 (1321)
T ss_dssp HHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTT---CCCSBCCCCCCCEE
T ss_pred HHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCc---cCCCCCCCCCCeEE
Confidence 21 224333332 222222222223344445566778889999999999999876543221 11222344567899
Q ss_pred EEeeEEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 235 LEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 235 ~~nvsf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
|+||+|+||.+ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|
T Consensus 1079 f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp EEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred EEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 99999999754 34699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccccchhhhcCCC---CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 314 PQEPTLFRGSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 314 ~Q~~~lf~~Ti~eNi~~~---~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||||+||+|||||||+++ .+++|+++++||++|++++||.+||+||||+|||+|
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred CCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 999999999999999876 357999999999999999999999999999999987
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3e-58 Score=454.11 Aligned_cols=363 Identities=23% Similarity=0.286 Sum_probs=299.7
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
.||+++++|++++|+++|++.++.++...+..++..++.+++.+++++.++|.++++++..+++..++..++.++.++..
T Consensus 112 ~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 191 (587)
T 3qf4_A 112 SNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF 191 (587)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998888888888888888888999999999887776666666666666666666666
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
++..+..+++.+.+.|.++|+++||+|++|+.+.++|++..++..+...+..............+..+...++.++ ..
T Consensus 192 ~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~ 271 (587)
T 3qf4_A 192 RKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVL 271 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778889999999999999999999999999999988887776655544444444333333333332222222 12
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
...|.++.|.+.+++.+...+..++..+...+..++++..+++|+.++++.+++.+.. ......++..+.|+++||+
T Consensus 272 v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~ 348 (587)
T 3qf4_A 272 VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALALPNVEGSVSFENVE 348 (587)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCCSCCCCCEEEEEEE
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCccccCCCCCcEEEEEEE
Confidence 2347888898888888888888888888888899999999999999999865532211 1111111235679999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+|++
T Consensus 349 ~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp ECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC
T ss_pred EEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC
Confidence 99976666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++|++|||.++. +.++++++++++.+++++++..+|+||||.+||+|
T Consensus 429 f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~ 477 (587)
T 3qf4_A 429 FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG 477 (587)
T ss_dssp CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSS
T ss_pred cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCC
Confidence 9999999999874 57899999999999999999999999999999976
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.4e-57 Score=449.80 Aligned_cols=361 Identities=18% Similarity=0.287 Sum_probs=306.0
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++..+++..++...+.++.++..
T Consensus 114 ~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 193 (582)
T 3b5x_A 114 RFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKIS 193 (582)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999998888888888899899999999999999988877666666666667777777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (367)
++..+..+++.+.+.|.++|+++||+|+.|+++.++|++..++..+...+......+.......+..+...++.++. .
T Consensus 194 ~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 273 (582)
T 3b5x_A 194 RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVD 273 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999999998888877766666666655555555444433333221 2
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
...|.+++|.+.+++.+...+..++..+...+..++++..+++|+.++++.+++.+. .. .+ .++..+.|+++||+
T Consensus 274 v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~-~~-~~~~~~~i~~~~v~ 348 (582)
T 3b5x_A 274 SIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GK-YE-AERVNGEVDVKDVT 348 (582)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CC-CC-CCCCCCeEEEEEEE
Confidence 234888999888888888888999999999999999999999999999986554211 11 11 11224579999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+|++
T Consensus 349 ~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T 3b5x_A 349 FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428 (582)
T ss_pred EEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcc
Confidence 99975435599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC--CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~--~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++|++|||.++. +.++++++++++.++++++++.+|+||||.+||+|
T Consensus 429 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~ 478 (582)
T 3b5x_A 429 FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478 (582)
T ss_pred ccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCC
Confidence 9999999998764 57889999999999999999999999999999986
No 5
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.7e-57 Score=449.30 Aligned_cols=362 Identities=17% Similarity=0.239 Sum_probs=306.3
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++..+++..++...+.++.++.
T Consensus 113 ~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 192 (582)
T 3b60_A 113 VAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSI 192 (582)
T ss_dssp STHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999888888888889989999999999999988877666666666666777777777
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (367)
.++..+..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+......+.......+..+...++.++...
T Consensus 193 ~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (582)
T 3b60_A 193 SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASF 272 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788899999999999999999999999999999999888887777666666666655555554444333332221
Q ss_pred --hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 161 --LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 161 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
..|.+++|.+.+++.+...+..++..+...+..++++..+++|+.++++.+++.+. .. .+ .++..+.|+++||
T Consensus 273 ~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~-~~-~~~~~~~i~~~~v 347 (582)
T 3b60_A 273 PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GK-RV-IDRATGDLEFRNV 347 (582)
T ss_dssp SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CC-BC-CSCCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CC-CC-CCCCCCcEEEEEE
Confidence 23778888888888888888889999999999999999999999999987554221 10 01 1123457999999
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+|+|+++++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+|+
T Consensus 348 ~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b60_A 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427 (582)
T ss_dssp EECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC
T ss_pred EEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc
Confidence 99997543459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC--CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~~--~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|++|++|||.++. +.++++++++++.++++++++++|+||||.+||+|
T Consensus 428 l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred CCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 99999999998764 57889999999999999999999999999999986
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.9e-58 Score=455.44 Aligned_cols=363 Identities=20% Similarity=0.273 Sum_probs=300.5
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.+++++...+..++..++.+++.+++++.++|.++++++..+++..++...+.++.++..
T Consensus 110 ~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 189 (578)
T 4a82_A 110 RFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLT 189 (578)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999887766666777788888889999999999988876666666666666777777777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
++..+..+++.+.+.|.++|+++||+|++|+.+.++|++..++..+...+..............+..+...++.++ ..
T Consensus 190 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~ 269 (578)
T 4a82_A 190 RERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYL 269 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788899999999999999999999999999999988887776665555554444444444433322222222 12
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeE
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 239 (367)
...|.+++|.+.+++.+...+..++..+...+..++++..+++|+.++++.+++.+.. ......++..+.|+++||+
T Consensus 270 v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~ 346 (578)
T 4a82_A 270 AISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVS 346 (578)
T ss_dssp HHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEE
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEE
Confidence 2347888998888888888888888889999999999999999999999876542211 1111111235679999999
Q ss_pred EEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 240 f~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
|+|+++++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+|++
T Consensus 347 ~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 426 (578)
T 4a82_A 347 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426 (578)
T ss_dssp ECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCC
T ss_pred EEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCcc
Confidence 99986556699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 320 f~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
|++|++|||.++. +.++++++++++.+++++++..+|+|+||.+||+|
T Consensus 427 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g 475 (578)
T 4a82_A 427 FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475 (578)
T ss_dssp CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC
Confidence 9999999998764 57889999999999999999999999999999875
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-58 Score=456.65 Aligned_cols=362 Identities=23% Similarity=0.303 Sum_probs=303.8
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++.++++..++...+.++.++.
T Consensus 125 ~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~ 204 (598)
T 3qf4_B 125 VGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKY 204 (598)
T ss_dssp THHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999988888888889999999999999999998887777777777777777777777
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-H
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-V 159 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 159 (367)
.+...+..+++.+.+.|.++|+++||+|++|+.+.++|++..++..+...+......+.......+..+...++.++. +
T Consensus 205 ~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 284 (598)
T 3qf4_B 205 FYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGW 284 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888899999999999999999999999999999988887776666555555554444444443333322222 2
Q ss_pred H-hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 160 L-LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 160 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
. ..|.+++|.+.+++.+...+..++..+...+..++++..+++|+.++++.+++.+. +. ....++..++|+++||
T Consensus 285 l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~--~~--~~~~~~~~~~i~~~~v 360 (598)
T 3qf4_B 285 LALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD--PD--AVELREVRGEIEFKNV 360 (598)
T ss_dssp HGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC--SS--CCCCCSCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CC--CCCCCCCCCeEEEEEE
Confidence 2 34788888888888777777888888899999999999999999999987654321 11 1111224567999999
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+|+
T Consensus 361 ~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 361 WFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439 (598)
T ss_dssp ECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC
T ss_pred EEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc
Confidence 9999754 359999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 319 lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+|++|++|||.++. +.++++++++++.++++++++.+|+||||.+||+|
T Consensus 440 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g 489 (598)
T 3qf4_B 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489 (598)
T ss_dssp CCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHH
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCC
Confidence 99999999998764 57889999999999999999999999999999764
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1e-56 Score=444.82 Aligned_cols=363 Identities=23% Similarity=0.286 Sum_probs=301.3
Q ss_pred cccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (367)
Q Consensus 2 ~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
+||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++..+++..++...+.++.++..
T Consensus 111 ~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 190 (595)
T 2yl4_A 111 AFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLT 190 (595)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999988888888888888899999999999999988776666666666666666666777
Q ss_pred hhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Q 017723 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (367)
++..+..+++.+.+.|.++|+++||+|+.|+++.++|++..++..+...+......+.......+..+...++.++ ..
T Consensus 191 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 270 (595)
T 2yl4_A 191 KVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLL 270 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777889999999999999999999999999999998888777666655555555444444443333322222 22
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcce-EEEEee
Q 017723 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGR-IELEDL 238 (367)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-I~~~nv 238 (367)
...|.+++|.+.+++.+...+..++..+...+..++++..+++|+.++++.+++.+.. ....+ ..+..++ |+++||
T Consensus 271 v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~~~i~~~~v 347 (595)
T 2yl4_A 271 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--EGVIL-NEKSFQGALEFKNV 347 (595)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS--CSBCC-CTTTCCCCEEEEEE
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--CCCCC-CcCCCCCeEEEEEE
Confidence 2358889998888888888888899999999999999999999999999875542211 11111 1123457 999999
Q ss_pred EEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 239 sf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
+|+|++. ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+|+|
T Consensus 348 ~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~ 427 (595)
T 2yl4_A 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427 (595)
T ss_dssp EEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSC
T ss_pred EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCC
Confidence 9999753 245999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCC-C---CCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 318 TLFRGSVRTNLDPLG-M---YSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 318 ~lf~~Ti~eNi~~~~-~---~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
++|++|++|||.++. . .++++++++++.++++++++.+|+|+||++||+|
T Consensus 428 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~ 481 (595)
T 2yl4_A 428 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 481 (595)
T ss_dssp CCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSS
T ss_pred cccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCC
Confidence 999999999998763 2 6889999999999999999999999999999876
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.2e-56 Score=472.61 Aligned_cols=365 Identities=19% Similarity=0.227 Sum_probs=297.3
Q ss_pred CcccccCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (367)
Q Consensus 1 ~~~f~~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++||+++++|++++|+++|++.++..++..+..++..++.+++.++++++++|.++++++++++++.++..++.++.++.
T Consensus 156 ~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~ 235 (1284)
T 3g5u_A 156 IGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF 235 (1284)
T ss_dssp THHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999998888777777777777777777777
Q ss_pred HhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--H
Q 017723 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--I 158 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~ 158 (367)
.++..+..++..+++.|.++|+++||+|++|+++.++|++..++..+...+.............++..+...++.++ .
T Consensus 236 ~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (1284)
T 3g5u_A 236 TDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTS 315 (1284)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788889999999999999999999999999999988887776554433333333333333332222222222 1
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEee
Q 017723 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (367)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nv 238 (367)
.+..|.+++|.+..++.+......++..+...+..++++..+++|+.++++.+++.+...+.. ..+.+..+.|+|+||
T Consensus 316 lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~~v 393 (1284)
T 3g5u_A 316 LVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSG--HKPDNIQGNLEFKNI 393 (1284)
T ss_dssp HHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSC--CCCTTCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccC--CCCCCCCCeEEEEEE
Confidence 223367777766655555555556666777788889999999999999998765432111111 111123568999999
Q ss_pred EEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 239 sf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|||
T Consensus 394 ~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp EECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred EEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence 9999754 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 318 ~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
+||++||+|||.++. +.++++++++++.+++++++..+|+|+||.+||+|
T Consensus 474 ~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 474 VLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp CCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred ccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 999999999998764 58899999999999999999999999999999986
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.6e-51 Score=435.10 Aligned_cols=365 Identities=18% Similarity=0.209 Sum_probs=280.3
Q ss_pred Ccccc--cCChhhHHHhhhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017723 1 MLFFD--STPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAR 78 (367)
Q Consensus 1 ~~~f~--~~~~g~l~~rl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 78 (367)
++||+ ++++|++++|+++|++.++..++..+..++..++.+++.+++++.++|.++++++.++++..+......+..+
T Consensus 797 ~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~ 876 (1284)
T 3g5u_A 797 VSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLS 876 (1284)
T ss_dssp SHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888 4799999999999999999999999999999999999999999999998877766555555544444444333
Q ss_pred HHHhhhhhccccHHHHHHHHhcchHHHHhcCchHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017723 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (367)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (367)
.......+..++....+.|.++|+++||+|++++++.++|.+..+...+...+..............+..+...++.++.
T Consensus 877 ~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 956 (1284)
T 3g5u_A 877 GQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFG 956 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555667789999999999999999999999999888776655444443333333333333232222222222
Q ss_pred HHh--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 017723 159 VLL--PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELE 236 (367)
Q Consensus 159 ~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 236 (367)
... .+.++.+.+..++.+......+...+......+.++..+.+|+.++++.+++.+..... ...+++..+.|+++
T Consensus 957 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~i~~~ 1034 (1284)
T 3g5u_A 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQ--GLKPNMLEGNVQFS 1034 (1284)
T ss_dssp HCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSS--CCCTTTTSCCEEEE
T ss_pred HHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc--cccccCCCCcEEEE
Confidence 211 25566665555555444444555555555667788899999999999875543211111 11112245689999
Q ss_pred eeEEEeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeec
Q 017723 237 DLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (367)
Q Consensus 237 nvsf~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q 315 (367)
||+|+|++. ..++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||
T Consensus 1035 ~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1035 GVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114 (1284)
T ss_dssp EEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEES
T ss_pred EEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECC
Confidence 999999753 2459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhhhcCCCC---CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 316 EPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 316 ~~~lf~~Ti~eNi~~~~---~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
||.+|++||+|||.++. ..++++++++++.+++++++.++|+||||++||+|
T Consensus 1115 ~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1115 EPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp SCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred CCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 99999999999998763 36899999999999999999999999999999987
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.9e-40 Score=298.24 Aligned_cols=174 Identities=22% Similarity=0.379 Sum_probs=147.3
Q ss_pred HHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCC
Q 017723 190 WYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRT 269 (367)
Q Consensus 190 ~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~S 269 (367)
+...++++.++++|+.++++.+++.... ... .......+.|+++||+|+|+++ .++|+|+||+|++||++||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~-~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDL--PGA-GPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCC--TTC-BCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSS
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccc--ccc-cccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCC
Confidence 4567889999999999998754322110 000 1111234579999999999754 45999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCc
Q 017723 270 GSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQL 348 (367)
Q Consensus 270 GsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l 348 (367)
|||||||+++|+|+|+|++|+|.+||+++.+++.+.+|++|+||+|+|++|++||+|||.++. ..++++++++++.+++
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999998774 5788999999999999
Q ss_pred cHHHhhCccccCCcCCCCC
Q 017723 349 KATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 349 ~~~i~~lp~gldt~i~e~~ 367 (367)
++++..+|+||||.+|++|
T Consensus 170 ~~~i~~lp~gl~t~~~~~g 188 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERG 188 (306)
T ss_dssp HHHHHHSTTGGGCEESTTS
T ss_pred HHHHHhccchhhhHhcCCc
Confidence 9999999999999999876
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-32 Score=242.19 Aligned_cols=136 Identities=29% Similarity=0.493 Sum_probs=125.3
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+|+++
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 46999999999953334599999999999999999999999999999999999999999999999999999888899999
Q ss_pred eEeecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCC
Q 017723 311 SIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSK 366 (367)
Q Consensus 311 ~~V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~ 366 (367)
+||+|+|.+|+.|++||+.++. ..++++++++++.+++.+++..+|.||++.++++
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 9999999999999999998753 3567889999999999999999999999998875
No 13
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=4.5e-32 Score=238.58 Aligned_cols=133 Identities=23% Similarity=0.505 Sum_probs=122.4
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++||+|+|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999533 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eecCccccccchhhhcCCC-C-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCC
Q 017723 313 IPQEPTLFRGSVRTNLDPL-G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSK 366 (367)
Q Consensus 313 V~Q~~~lf~~Ti~eNi~~~-~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~ 366 (367)
|+|+|.+|++|++|||.++ . ..++++++++++.+++.+++..+|.|+++.+++.
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 136 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTT
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccC
Confidence 9999999999999999875 2 4567889999999999999999999999988764
No 14
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=247.05 Aligned_cols=139 Identities=38% Similarity=0.672 Sum_probs=129.0
Q ss_pred CCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhh
Q 017723 228 PSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 307 (367)
Q Consensus 228 ~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 307 (367)
+..+.|+++||+++|+.+...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++.+++.+.+|
T Consensus 15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 3456799999999997555569999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCCC
Q 017723 308 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSKD 367 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~~ 367 (367)
++++||+|++.+|+.|++||+.+.....+++++++++.+++.+++.+.|.+|+|.++++|
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 999999999999999999999866566789999999999999999999999999988765
No 15
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=6.5e-31 Score=233.11 Aligned_cols=135 Identities=30% Similarity=0.460 Sum_probs=122.4
Q ss_pred ceEEEEeeEEEeCCCC-CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 231 GRIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~-~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
..|+++||+|+|++.. +.+|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3599999999996432 4599999999999999999999999999999999999997 8999999999998888889999
Q ss_pred ceEeecCccccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccccCCcCCCC
Q 017723 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSK 366 (367)
Q Consensus 310 i~~V~Q~~~lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~ 366 (367)
++||+|+|.+|+.|++||+.++. ..+++++.++++.+++.+++..+|+|+||.+++.
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~ 152 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSS
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCC
Confidence 99999999999999999997753 3467889999999999999999999999987754
No 16
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=2.1e-30 Score=231.10 Aligned_cols=135 Identities=29% Similarity=0.414 Sum_probs=120.9
Q ss_pred ceEEEEeeEEEeCC-CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 231 GRIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~-~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
+.|+++||+|+|++ ....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 45999999999964 22459999999999999999999999999999999999999999999999999998888889999
Q ss_pred ceEeecCccccccchhhhcCCCC-CCCH-HHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSD-NEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 310 i~~V~Q~~~lf~~Ti~eNi~~~~-~~~~-e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
|+||+|+|.+|+.|++|||.++. ..++ +++.++++.+++.+++..+|+|+++.+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~ 152 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC
Confidence 99999999999999999998753 2334 67888899999999999999999887654
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=1.2e-28 Score=214.72 Aligned_cols=123 Identities=24% Similarity=0.385 Sum_probs=110.6
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
+.|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999964445699999999999999999999999999999999999999999999998 59
Q ss_pred eEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCC
Q 017723 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSK 366 (367)
Q Consensus 311 ~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~ 366 (367)
+||+|+|.+|++|++||+.++....+.+..++++.+++.+++..+|.+++|.++++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 127 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCC
Confidence 99999999999999999987644455667788899999999999999999887754
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=3.2e-28 Score=212.93 Aligned_cols=122 Identities=26% Similarity=0.414 Sum_probs=108.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++||+|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999964344599999999999999999999999999999999999999999999999 499
Q ss_pred EeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCC
Q 017723 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSK 366 (367)
Q Consensus 312 ~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~ 366 (367)
||+|+|.+|+.|++||+.++...++++.+++++.+++.+.+..+|.|++|.+++.
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 124 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEK 124 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTT
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCC
Confidence 9999999999999999987644445667888899999999999999988776653
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=1.1e-27 Score=209.26 Aligned_cols=125 Identities=24% Similarity=0.422 Sum_probs=105.0
Q ss_pred EEEEeeEEEeCCCC--CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh----
Q 017723 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL---- 306 (367)
Q Consensus 233 I~~~nvsf~Y~~~~--~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~---- 306 (367)
|+++||+|+|+... ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 359999999999999999999999999999999999999999999999999999987764
Q ss_pred hhhceEeecCcccccc-chhhhcCCC------CCCC----HHHHHHHHHHcCccHHH-hhCcc
Q 017723 307 RTKLSIIPQEPTLFRG-SVRTNLDPL------GMYS----DNEIWEAMEKCQLKATI-SRLPM 357 (367)
Q Consensus 307 r~~i~~V~Q~~~lf~~-Ti~eNi~~~------~~~~----~e~i~~al~~a~l~~~i-~~lp~ 357 (367)
|++++||+|+|.+|+. |++||+.++ ...+ .+++.++++.+++.+.. ...|.
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh
Confidence 4579999999999987 999998541 1122 34678889999987753 44444
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=7.9e-28 Score=214.27 Aligned_cols=127 Identities=27% Similarity=0.456 Sum_probs=107.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC--CCChhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 309 (367)
-|+++||+|+|+.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 59999999999643 34999999999999999999999999999999999999999999999999984 3345578899
Q ss_pred ceEeecCc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 310 LSIIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 310 i~~V~Q~~--~lf~~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++||+|+| .+|+.|++||+.++. ..+ ++++.++++.+++.++....|..|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCL 144 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccC
Confidence 99999998 588999999996531 122 346888999999988777666543
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.94 E-value=3e-27 Score=216.80 Aligned_cols=129 Identities=23% Similarity=0.368 Sum_probs=110.7
Q ss_pred ceEEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---
Q 017723 231 GRIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD--- 305 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~--- 305 (367)
.-|+++||+++|+.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 359999999999643 235899999999999999999999999999999999999999999999999999998765
Q ss_pred hhhhceEeecCcccccc-chhhhcCCC---CCCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 306 LRTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~~-Ti~eNi~~~---~~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+|++|+||+|++.+|+. |++||+.++ ...+ ++++.++++.+++.+.....|..|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 47889999999999876 999999653 1122 356888999999998887777644
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.94 E-value=9.1e-27 Score=206.89 Aligned_cols=124 Identities=20% Similarity=0.262 Sum_probs=110.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.+.+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999953 34999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCccc-cccchhhhcCCCC-----CCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 312 IIPQEPTL-FRGSVRTNLDPLG-----MYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 312 ~V~Q~~~l-f~~Ti~eNi~~~~-----~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
||+|++.+ |+.|++||+.++. ...++++.++++..++.++....|.
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc
Confidence 99999987 6789999996532 2345688999999999877666554
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.94 E-value=1.2e-26 Score=205.50 Aligned_cols=125 Identities=30% Similarity=0.478 Sum_probs=106.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC--CCChhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 309 (367)
-|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999953 34999999999999999999999999999999999999999999999999985 3345567889
Q ss_pred ceEeecCcccccc-chhhhcCCC----CCCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 310 LSIIPQEPTLFRG-SVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi~~~----~~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++||+|++.+|+. |++||+.++ ...+ ++++.++++..++.++....|..
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhh
Confidence 9999999999887 999999652 1122 35688899999998877666543
No 24
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.94 E-value=5e-27 Score=203.70 Aligned_cols=125 Identities=27% Similarity=0.320 Sum_probs=105.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh---hh-
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR- 307 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r- 307 (367)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4899999999954 35999999999999999999999999999999999999999999999999998877653 34
Q ss_pred hhceEeecCccccc-cchhhhcCCCC---CC----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 308 TKLSIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~-~Ti~eNi~~~~---~~----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
++++||+|++.+|+ .|++||+.++. .. .++++.++++..++.+.....|..
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYE 140 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 78999999999987 49999996421 11 235688899999998776665543
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=8.6e-27 Score=200.03 Aligned_cols=116 Identities=32% Similarity=0.522 Sum_probs=101.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++||+++|+. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 5999999999954 5999999999999999999999999999999999999999999999999886 3688999
Q ss_pred EeecCcccccc-chhhhcCCC----C-CCCHHHHHHHHHHcCccHHHhhCc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPL----G-MYSDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~----~-~~~~e~i~~al~~a~l~~~i~~lp 356 (367)
||+|++.+|++ |++||+.++ . +..++++.++++..++.+. ...|
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~ 131 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKL 131 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBG
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCCh
Confidence 99999999987 999999653 1 2346789999999998766 5443
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=1.9e-26 Score=205.17 Aligned_cols=124 Identities=28% Similarity=0.393 Sum_probs=106.3
Q ss_pred EEEEeeEEEeCCCC---CcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~---~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
|+++||+++|+.+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999996222 3599999999999999999999999999999999999999999999999988642 67889
Q ss_pred ceEeecCc--cccccchhhhcCCCC------CCCHHHHHHHHHHcCcc--HHHhhCcccc
Q 017723 310 LSIIPQEP--TLFRGSVRTNLDPLG------MYSDNEIWEAMEKCQLK--ATISRLPMLL 359 (367)
Q Consensus 310 i~~V~Q~~--~lf~~Ti~eNi~~~~------~~~~e~i~~al~~a~l~--~~i~~lp~gl 359 (367)
++||+|+| .+++.|++||+.++. ...++++.++++.+++. ++....|..|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 139 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL 139 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhC
Confidence 99999997 578899999996531 12356799999999999 8887777544
No 27
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.3e-26 Score=203.20 Aligned_cols=123 Identities=27% Similarity=0.420 Sum_probs=101.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhh-hhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 310 (367)
-|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |+++
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999954 349999999999999999999999999999999999999999999999999988877665 4559
Q ss_pred eEeecCcccccc-chhhhcCCCC--CCC----HHHHHHHHHHcC-ccHHHhhCc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG--MYS----DNEIWEAMEKCQ-LKATISRLP 356 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~--~~~----~e~i~~al~~a~-l~~~i~~lp 356 (367)
+||+|++.+|++ |++||+.++. ..+ ++++.++++..+ +.+.....|
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 137 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBS
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCCh
Confidence 999999999987 9999997532 111 234566666663 655544433
No 28
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2.3e-26 Score=202.93 Aligned_cols=125 Identities=26% Similarity=0.412 Sum_probs=107.3
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
+.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|+++
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 35999999999953 359999999999999999999999999999999999999999999999999876 456788899
Q ss_pred eEeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+||+|++.+|+. |++||+.+.. ..+ ++++.++++..++.++....|..
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 146 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 146 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGG
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhh
Confidence 999999999887 9999996531 122 25688899999998887665543
No 29
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.93 E-value=3e-26 Score=210.14 Aligned_cols=126 Identities=25% Similarity=0.344 Sum_probs=107.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC--Chhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM--GLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~--~~~~~r~~ 309 (367)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .....+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999953 3499999999999999999999999999999999999999999999999998432 23345788
Q ss_pred ceEeecCcccccc-chhhhcCCCCC---C----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 310 LSIIPQEPTLFRG-SVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi~~~~~---~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+||+|++.+|+. |++|||.++.. . .++++.++++.+++.++..+.|..|
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 139 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGS
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 9999999999965 99999976421 1 2357889999999999888777654
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=5.8e-26 Score=199.58 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=106.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++||+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3899999986 3999999999999999999999999999999999999999 99999999999888889999999
Q ss_pred EeecCcccccc-chhhhcCCCC--CCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~--~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
||+|++.+|.. |++||+.++. ..+++++.++++..++.++....|..
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ 126 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhh
Confidence 99999998875 9999997642 12478899999999998887665543
No 31
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.93 E-value=3.2e-26 Score=211.33 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=108.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++||+++|+. ..+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999953 3499999999999999999999999999999999999999999999999999988765 47799
Q ss_pred EeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+. |++|||.++. ..+ ++++.++++.+++.++.++.|..|
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~L 134 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGS
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHC
Confidence 99999999975 9999997631 122 357889999999999888777654
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.93 E-value=5e-26 Score=201.58 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=105.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh-hhhhhc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 310 (367)
-|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|+++
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999953 3499999999999999999999999999999999999999999999999999877653 467889
Q ss_pred eEeecCccccc-cchhhhcCCCC-C---------------CC----HHHHHHHHHHcCccHHHhhCccc
Q 017723 311 SIIPQEPTLFR-GSVRTNLDPLG-M---------------YS----DNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 311 ~~V~Q~~~lf~-~Ti~eNi~~~~-~---------------~~----~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+||+|++.+|+ .|++||+.++. . .+ .+++.++++..++.+.....|..
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchh
Confidence 99999999886 59999996531 1 11 24678899999998776665543
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=2.5e-26 Score=205.31 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=105.4
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC--CCChhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 309 (367)
-|+++||+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999953 34999999999999999999999999999999999999999999999999998 7777888999
Q ss_pred ceEeecCccc-ccc--chhhhcCCCC--------CCC---HHHHHHHHHHcCccHHHhhCcc
Q 017723 310 LSIIPQEPTL-FRG--SVRTNLDPLG--------MYS---DNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 310 i~~V~Q~~~l-f~~--Ti~eNi~~~~--------~~~---~e~i~~al~~a~l~~~i~~lp~ 357 (367)
++||+|++.+ |.. |++||+.++. ..+ .+++.++++..++.++....|.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh
Confidence 9999999975 555 9999997532 112 2467889999999887665554
No 34
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.93 E-value=6.6e-26 Score=208.50 Aligned_cols=124 Identities=23% Similarity=0.340 Sum_probs=107.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999953 3499999999999999999999999999999999999999999999999999887654 67899
Q ss_pred EeecCcccccc-chhhhcCCCCC---C----CHHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~~---~----~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+. |++|||.++.. . .++++.++++..++.++.++.|..|
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999975 99999976421 1 2357899999999999888777644
No 35
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=6.4e-26 Score=201.24 Aligned_cols=126 Identities=26% Similarity=0.440 Sum_probs=106.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC----------C
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----------M 301 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~----------~ 301 (367)
-|+++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4999999999953 349999999999999999999999999999999999999999999999999862 4
Q ss_pred Ch---hhhhhhceEeecCcccccc-chhhhcCCCC----CCC----HHHHHHHHHHcCccHH-HhhCcccc
Q 017723 302 GL---KDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKAT-ISRLPMLL 359 (367)
Q Consensus 302 ~~---~~~r~~i~~V~Q~~~lf~~-Ti~eNi~~~~----~~~----~e~i~~al~~a~l~~~-i~~lp~gl 359 (367)
+. ..+|++++||+|++.+|+. |++||+.++. ..+ ++++.++++..++.++ ....|..|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 154 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence 43 3568889999999999887 9999996521 122 3568899999999988 66665543
No 36
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.93 E-value=1.1e-25 Score=207.94 Aligned_cols=124 Identities=26% Similarity=0.388 Sum_probs=102.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++++
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999953 3499999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EeecCcccccc-chhhhcCCCCC---CC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~~---~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+. |++|||.++.. .+ ++++.++++..++.++..+.|..|
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 142 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL 142 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTC
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 99999999975 99999986521 22 346889999999999888777644
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.93 E-value=4.3e-26 Score=209.24 Aligned_cols=126 Identities=25% Similarity=0.401 Sum_probs=108.3
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..|+++|++++|+++ ..+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++++
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 469999999999422 349999999999999999999999999999999999999999999999999987654 47889
Q ss_pred eEeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 311 SIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 311 ~~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+||+|++.+|+. |++|||.++. ..+ ++++.++++..++.++.++.|..|
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 146 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHEL 146 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 999999999975 9999997531 122 457889999999999888777644
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.93 E-value=9.8e-26 Score=206.71 Aligned_cols=122 Identities=24% Similarity=0.450 Sum_probs=106.9
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ . +|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++++|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999953 4 9999999999999999999999999999999999999999999999999987554 4789999
Q ss_pred eecCcccccc-chhhhcCCCC----CCCHHHHHHHHHHcCccHHHhhCcccc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~----~~~~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
|+|++.+|+. |++||+.++. ...++++.++++..++.++.++.|..|
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 128 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhC
Confidence 9999999986 9999997531 123378999999999998887777644
No 39
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=9.4e-26 Score=202.42 Aligned_cols=118 Identities=24% Similarity=0.407 Sum_probs=94.3
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
+.|+++||+|.| ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 469999999964 2499999999999999999999999999999999999999999999998 59
Q ss_pred eEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCCCC
Q 017723 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNSK 366 (367)
Q Consensus 311 ~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e~ 366 (367)
+||+|++.+|++|++||+. +....+.++.++++.+++.+++..+|.+++|+++++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 156 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC---
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCc
Confidence 9999999999999999997 433345667788899999999999999999887654
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.92 E-value=8.5e-26 Score=208.02 Aligned_cols=124 Identities=23% Similarity=0.398 Sum_probs=107.2
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 3899999999953 3499999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 312 ~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
||+|++.+|+. |++|||.++. ..+ ++++.++++..++.++.++.|..|
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQL 134 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhC
Confidence 99999999975 9999997531 122 357889999999998887777544
No 41
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.92 E-value=1.7e-25 Score=195.73 Aligned_cols=119 Identities=22% Similarity=0.323 Sum_probs=102.4
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
|+++|++++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+|++++|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 35788999
Q ss_pred eecCcccccc-chhhhcCCCCCC-----CHHHHHHHHHHcCccHHHhhCccc
Q 017723 313 IPQEPTLFRG-SVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 313 V~Q~~~lf~~-Ti~eNi~~~~~~-----~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
|+|++.+|+. |++||+.++... .++++.++++..++.++....|..
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR 126 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGG
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhh
Confidence 9999999987 999999764211 246788999999998877666543
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.92 E-value=7.9e-26 Score=208.13 Aligned_cols=125 Identities=20% Similarity=0.337 Sum_probs=106.9
Q ss_pred EEEEeeEEEeCCCCCc--ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC---hhhhh
Q 017723 233 IELEDLKVRYRPNTPL--VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLR 307 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~--~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~r 307 (367)
|+++|++++|+. .. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ....+
T Consensus 4 l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 4 IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp EEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 899999999953 35 999999999999999999999999999999999999999999999999987621 23457
Q ss_pred hhceEeecCcccccc-chhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 308 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~~-Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
++++||+|++.+|+. |++||+.++. ..+ ++++.++++..++.++.++.|..|
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 141 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 889999999999976 9999997642 122 357889999999999888777644
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.92 E-value=2.6e-25 Score=205.90 Aligned_cols=124 Identities=22% Similarity=0.287 Sum_probs=105.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC------CChhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS------MGLKD 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~------~~~~~ 305 (367)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ .++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 3899999999953 349999999999999999999999999999999999999999999999999876 544
Q ss_pred hhhhceEeecCccccc-cchhhhcCCCC---CCC----HHHHHHHHHHcCccHHHhhCcccc
Q 017723 306 LRTKLSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~-~Ti~eNi~~~~---~~~----~e~i~~al~~a~l~~~i~~lp~gl 359 (367)
.+++++||+|++.+|+ .|++||+.++. ..+ ++++.++++..++.++..+.|..|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 140 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGS
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccC
Confidence 3678999999999986 59999997531 122 356889999999998887777544
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.91 E-value=8.4e-25 Score=192.87 Aligned_cols=122 Identities=25% Similarity=0.306 Sum_probs=101.5
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC--CCCCCceEEECCeecCCCChhhh-hhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~~ 309 (367)
|+++||+|+|+. ..+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 899999999953 3599999999999999999999999999999999999 89999999999999998887665 456
Q ss_pred ceEeecCcccccc-chhhhcCCCC------CCC----HHHHHHHHHHcCcc-HHHhhCc
Q 017723 310 LSIIPQEPTLFRG-SVRTNLDPLG------MYS----DNEIWEAMEKCQLK-ATISRLP 356 (367)
Q Consensus 310 i~~V~Q~~~lf~~-Ti~eNi~~~~------~~~----~e~i~~al~~a~l~-~~i~~lp 356 (367)
++||+|+|.+|++ |++||+.+.. ..+ .+++.++++..++. +.....|
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 9999999999886 9999986421 111 35678889998884 5555544
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=5.5e-25 Score=194.81 Aligned_cols=120 Identities=23% Similarity=0.385 Sum_probs=103.2
Q ss_pred EEEEeeEEEeCCC--CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 233 I~~~nvsf~Y~~~--~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
|+++|++++|++. ...+|+|+||+++ |++++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1359999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred e-EeecCccccccchhhhcCCCC---CCCHHHHHHHHHHcCcc-HHHhhCccc
Q 017723 311 S-IIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLK-ATISRLPML 358 (367)
Q Consensus 311 ~-~V~Q~~~lf~~Ti~eNi~~~~---~~~~e~i~~al~~a~l~-~~i~~lp~g 358 (367)
+ ||+|++.+ +.|++||+.++. ...++++.++++..++. +.....|..
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 128 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYK 128 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGG
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhh
Confidence 9 99999999 999999997531 34678899999999998 776655543
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=2.5e-24 Score=189.84 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=95.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
-|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999623 4599999999999999999999999999999999999999999998 356899
Q ss_pred EeecCcccc-ccchhhhcCCCCC--------C---CHHHHHHHHHHcCccHHHhhCccc
Q 017723 312 IIPQEPTLF-RGSVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 312 ~V~Q~~~lf-~~Ti~eNi~~~~~--------~---~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
||+|++.+| +.|++||+.++.. . .++++.++++..++.++....|..
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 128 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS 128 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh
Confidence 999999987 6799999975320 1 135688999999998887665543
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=4.4e-24 Score=189.91 Aligned_cols=121 Identities=21% Similarity=0.321 Sum_probs=99.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC--CCCCCceEEECCeecCCCChhhh-hh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 308 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~ 308 (367)
-|+++||+|+|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999953 3599999999999999999999999999999999999 57999999999999988877665 45
Q ss_pred hceEeecCcccccc-chhhhcCCC---------C-CCC----HHHHHHHHHHcCcc-HHHhh
Q 017723 309 KLSIIPQEPTLFRG-SVRTNLDPL---------G-MYS----DNEIWEAMEKCQLK-ATISR 354 (367)
Q Consensus 309 ~i~~V~Q~~~lf~~-Ti~eNi~~~---------~-~~~----~e~i~~al~~a~l~-~~i~~ 354 (367)
.++||+|+|.+|++ |++||+.+. . ..+ ++++.++++..++. +....
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 159 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR 159 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTS
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 69999999998876 889987431 0 122 24677888888885 34443
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.87 E-value=1.9e-25 Score=200.83 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCC-CcceEEEEeeEEEeCCCCCcceeeeeeEecCC
Q 017723 182 SIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWP-SHGRIELEDLKVRYRPNTPLVLKGITCTFKEG 260 (367)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G 260 (367)
.++..+...+..++++..+..|+.++++.+++... . ...++ ..+.|+++||+|+|+ .++|+++||+|++|
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~---~---~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~G 126 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT---G---EGSWKSILTFFNYQNIELITF---INALKLWLKGIPKK 126 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC---S---SCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---C---CCcccccCCeEEEEEEEEEcC---hhhhccceEEecCC
Confidence 44556677778889999999999999975432110 0 01111 123599999999996 35999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhh-hcCCCCCCCHHHH
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT-NLDPLGMYSDNEI 339 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~e-Ni~~~~~~~~e~i 339 (367)
++++||||||||||||+++|+|++ +|+| +++|+|++++|++|++| ||.+..+.++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~--- 182 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH--- 182 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH---
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH---
Confidence 999999999999999999999999 7998 35789999999999998 9987544443
Q ss_pred HHHHHHcCccHHHhh-CccccC
Q 017723 340 WEAMEKCQLKATISR-LPMLLD 360 (367)
Q Consensus 340 ~~al~~a~l~~~i~~-lp~gld 360 (367)
++++++.. ||+|||
T Consensus 183 -------~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 183 -------ACWRYFDTYLRNALD 197 (305)
T ss_dssp -------HHHHHHHHTTTGGGG
T ss_pred -------HHHHHHHHHhHccCC
Confidence 23456666 888887
No 49
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.81 E-value=7.4e-23 Score=190.01 Aligned_cols=130 Identities=19% Similarity=0.139 Sum_probs=99.7
Q ss_pred EEEeeEEE---eCCCCCcce---------eeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC
Q 017723 234 ELEDLKVR---YRPNTPLVL---------KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (367)
Q Consensus 234 ~~~nvsf~---Y~~~~~~~L---------~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~ 301 (367)
+|+||+|+ |++.++++| +++|+++++|+.++|+|+||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 964333455 9999999999999999999999999999999999999999999985 456
Q ss_pred ChhhhhhhceEee-cCccc---cccchhhhcCCC-CCCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 302 GLKDLRTKLSIIP-QEPTL---FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 302 ~~~~~r~~i~~V~-Q~~~l---f~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
.....|+.+++++ |++.+ +..|+++||..+ ...++..+...++.+++++++..+|.|++|.+++
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITS 283 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEE
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence 6556788999999 99886 889999999643 2233333334445566778899999999997764
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.70 E-value=1.6e-17 Score=169.22 Aligned_cols=64 Identities=22% Similarity=0.446 Sum_probs=59.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
-|+++|++|+|++..+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 4999999999975444599999999999999999999999999999999999999999999986
No 51
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.70 E-value=7.9e-19 Score=145.04 Aligned_cols=89 Identities=20% Similarity=0.201 Sum_probs=68.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCeecCCCC---hhhhh-hhce----EeecCccccccchhhhcC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMG---LKDLR-TKLS----IIPQEPTLFRGSVRTNLD 329 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~i~~~~---~~~~r-~~i~----~V~Q~~~lf~~Ti~eNi~ 329 (367)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 77888 5788 899999988 332
Q ss_pred CCCCCCHHHHHHHHHHcCccHHHhh-CccccCCcCCCC
Q 017723 330 PLGMYSDNEIWEAMEKCQLKATISR-LPMLLDSSGNSK 366 (367)
Q Consensus 330 ~~~~~~~e~i~~al~~a~l~~~i~~-lp~gldt~i~e~ 366 (367)
.+ ++. .+++++++.. +| ||||.++|+
T Consensus 77 ----~~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg 103 (171)
T 2f1r_A 77 ----VS-EEE-----GNDLDWIYERYLS-DYDLVITEG 103 (171)
T ss_dssp ----CC-HHH-----HTCHHHHHHHHTT-TCSEEEEES
T ss_pred ----CC-hhh-----hhCHHHHHHhhCC-CCCEEEECC
Confidence 11 222 8899999999 99 999999874
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.67 E-value=3.1e-17 Score=161.28 Aligned_cols=111 Identities=23% Similarity=0.305 Sum_probs=91.2
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..++++|++++|.+ ..|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++ .++
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 35999999999953 37999999999999999999999999999999999999999999862 379
Q ss_pred eEeecCccc-cccchhhhcCCC--CC-CCHHHHHHHHHHcCccHHHhhCcc
Q 017723 311 SIIPQEPTL-FRGSVRTNLDPL--GM-YSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 311 ~~V~Q~~~l-f~~Ti~eNi~~~--~~-~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
+||||++.+ ++.|+.||+... .. ...+++.++++..++.++....|.
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 470 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE 470 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGG
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChh
Confidence 999999876 678999998532 11 134567888988888776555443
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.67 E-value=3.8e-17 Score=159.00 Aligned_cols=110 Identities=25% Similarity=0.303 Sum_probs=90.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhce
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
.++++|+++.|.+ ..|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++ ..++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceEE
Confidence 5999999999953 37999999999999999999999999999999999999999999862 3699
Q ss_pred EeecCccc-cccchhhhcCCC--CC-CCHHHHHHHHHHcCccHHHhhCcc
Q 017723 312 IIPQEPTL-FRGSVRTNLDPL--GM-YSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 312 ~V~Q~~~l-f~~Ti~eNi~~~--~~-~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
||+|++.. ++.|+.||+... .. ...+++.++++..++.+.....|.
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 400 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN 400 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGG
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChh
Confidence 99999976 677999987532 11 234567888888888766555443
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.65 E-value=1.1e-16 Score=155.49 Aligned_cols=113 Identities=20% Similarity=0.228 Sum_probs=93.1
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..++++|++.+|.+ ..|++.|+++++||+++|+|+||||||||+++|+|+++|++|+|.+++ ..+
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 35899999999953 378889999999999999999999999999999999999999999876 368
Q ss_pred eEeecCccc-cccchhhhcCCC-C---CCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 311 SIIPQEPTL-FRGSVRTNLDPL-G---MYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 311 ~~V~Q~~~l-f~~Ti~eNi~~~-~---~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++|++.. +..|++||+... . ....+.+.++++..++.++....|..
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 385 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND 385 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGG
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhh
Confidence 999999874 678999998532 1 12345678888888888776655543
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.65 E-value=3.3e-17 Score=161.13 Aligned_cols=118 Identities=25% Similarity=0.309 Sum_probs=90.2
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE---------EECCeecCCCChhh-
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LIDGLDICSMGLKD- 305 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I---------~~~g~~i~~~~~~~- 305 (367)
+|++++|++. ..+|+++| ++++||+++|+|+||||||||+++|+|+++|++|++ .++|.++.++....
T Consensus 95 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 9999999643 24899999 999999999999999999999999999999999996 45676554321111
Q ss_pred -hhhhceEeecCcc----ccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCcc
Q 017723 306 -LRTKLSIIPQEPT----LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPM 357 (367)
Q Consensus 306 -~r~~i~~V~Q~~~----lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~ 357 (367)
.+..+++++|+.. ++.+|++||+.... ..+++.++++..++.+...+.|.
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~~~~~ 227 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDRELH 227 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGGSBGG
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhCCChh
Confidence 2345888888754 44569999985321 23568889999999877665554
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.62 E-value=5.9e-17 Score=157.66 Aligned_cols=120 Identities=27% Similarity=0.308 Sum_probs=87.3
Q ss_pred EEE-EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE---------EECCeecCCCC
Q 017723 233 IEL-EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LIDGLDICSMG 302 (367)
Q Consensus 233 I~~-~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I---------~~~g~~i~~~~ 302 (367)
.++ +|++++|++. ..+|+++| +|++||+++|+|+||||||||+++|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 455 6899999643 24899999 999999999999999999999999999999999996 45665554321
Q ss_pred hhh--hhhhceEeecCccc----cccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCc
Q 017723 303 LKD--LRTKLSIIPQEPTL----FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 303 ~~~--~r~~i~~V~Q~~~l----f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp 356 (367)
... .+..+++++|+..+ +.+|++||+.... ..+++.++++..++.+.....|
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~~~~ 156 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVLEREI 156 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTTSBG
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhhCCh
Confidence 111 12458899987654 3468999874211 2356788999999876654443
No 57
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.62 E-value=7.8e-17 Score=139.12 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=62.3
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh-hhhhhhceEeecCcccccc----
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKLSIIPQEPTLFRG---- 322 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i~~V~Q~~~lf~~---- 322 (367)
..|+|+||++++|+.++|+||||||||||+++|+|++ | |+|.+ |+++...++ ...++.++|++|++.+|+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3799999999999999999999999999999999999 6 99999 887755432 3457789999999877754
Q ss_pred -------chhhhcCCCCCCCHHHHHHHHHHcC
Q 017723 323 -------SVRTNLDPLGMYSDNEIWEAMEKCQ 347 (367)
Q Consensus 323 -------Ti~eNi~~~~~~~~e~i~~al~~a~ 347 (367)
++.+|. ++ .++++++++++...
T Consensus 87 ~~~l~~~~~~~~~-~g--~~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 87 EDFLEYDNYANNF-YG--TLKSEYDKAKEQNK 115 (218)
T ss_dssp TCEEEEEEETTEE-EE--EEHHHHHHHHHTTC
T ss_pred cchhhhhhccccc-CC--CcHHHHHHHHhCCC
Confidence 333441 11 23566777777654
No 58
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.61 E-value=3.5e-17 Score=133.44 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=71.9
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeec
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q 315 (367)
+|++++|.. ..+++++||++++|+.++|+|++|||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 455666742 34899999999999999999999999999999999999 9999999999887531 1112 28999
Q ss_pred CccccccchhhhcC
Q 017723 316 EPTLFRGSVRTNLD 329 (367)
Q Consensus 316 ~~~lf~~Ti~eNi~ 329 (367)
++.+|+-|+.||+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99999889999984
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.9e-18 Score=164.50 Aligned_cols=102 Identities=18% Similarity=0.094 Sum_probs=80.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc-e-EEECCeecCCCChhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-R-ILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G-~-I~~~g~~i~~~~~~~~r~~ 309 (367)
-++++||+|+|+ ++||++++|++++|+|+||||||||+++|+|+++|++| + |++|| +.|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCC
Confidence 477888888773 79999999999999999999999999999999999999 9 99998 13678
Q ss_pred ceEeecCccccc----cchhhhcCCCCC-----CCHHHHHHHHHHcCccHH
Q 017723 310 LSIIPQEPTLFR----GSVRTNLDPLGM-----YSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 310 i~~V~Q~~~lf~----~Ti~eNi~~~~~-----~~~e~i~~al~~a~l~~~ 351 (367)
+++|||++.+|. .|++||+ ++.. ..++++.++++..++.+.
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~ 230 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERI 230 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSG
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcc
Confidence 999999997654 4899998 5321 122344455556665544
No 60
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.57 E-value=1.4e-16 Score=148.27 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=79.1
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CceEEECCeecCCCChhhhhhhceEeec-----Ccccccc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQ-----EPTLFRG 322 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~V~Q-----~~~lf~~ 322 (367)
+|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .++..+++|+| ++..|++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 566665 8999999999999999999999999999998 899988776654 2 35778999999 8999999
Q ss_pred chhhhcCCCCCC-------CHHHHHHHHHHcCc
Q 017723 323 SVRTNLDPLGMY-------SDNEIWEAMEKCQL 348 (367)
Q Consensus 323 Ti~eNi~~~~~~-------~~e~i~~al~~a~l 348 (367)
++++|+...++. +++.++.+++.++.
T Consensus 201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTT
T ss_pred HHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhc
Confidence 999999764443 67778888887754
No 61
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.57 E-value=6.6e-17 Score=146.61 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=89.1
Q ss_pred hhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceEEEEeeEEEeCCCCCcceeeeeeE--------------------
Q 017723 197 NIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCT-------------------- 256 (367)
Q Consensus 197 ~~~s~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~-------------------- 256 (367)
++.++.++.+.+..+..+.. .. ... ...+.|+++||++.|. ++++++++.
T Consensus 14 ~r~~~~~l~~~~~~~~~~~~---~~-~l~--~~~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (312)
T 3aez_A 14 DRRQWRALRMSTPLALTEEE---LV-GLR--GLGEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQ 83 (312)
T ss_dssp EHHHHHGGGTTCCCCCCHHH---HH-TTC--CTTCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHhcCCCCCCHHH---HH-hcc--CCCCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhccccc
Confidence 44567777766654332110 00 010 1234699999999994 377777765
Q ss_pred ---ecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcCCCC-
Q 017723 257 ---FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG- 332 (367)
Q Consensus 257 ---i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~- 332 (367)
+++|+.++|+|+||||||||+++|.|+++|..|. +++++|+||+++++.|++||+.+..
T Consensus 84 ~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~ 146 (312)
T 3aez_A 84 NPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHR 146 (312)
T ss_dssp CSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTC
T ss_pred ccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHh
Confidence 8999999999999999999999999999998664 4799999999999999999986431
Q ss_pred -----CCCHHHHHHHHHHcC
Q 017723 333 -----MYSDNEIWEAMEKCQ 347 (367)
Q Consensus 333 -----~~~~e~i~~al~~a~ 347 (367)
..+.+++.+.++..+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhC
Confidence 123355666665543
No 62
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.55 E-value=2.1e-16 Score=134.32 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=76.2
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcCCC-------------CCCceEEECCeecCCCChhhhhhhceEeecCccccccc
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS 323 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-------------p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~T 323 (367)
+++|+.++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+.+++.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 88898 599999999999999886 7999999999
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCc
Q 017723 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSS 362 (367)
Q Consensus 324 i~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~ 362 (367)
+++|+ ++ .++++++++++.....-+ ...|+|+++.
T Consensus 76 ~~~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g~~~~ 110 (198)
T 1lvg_A 76 FSGNL-YG--TSKEAVRAVQAMNRICVL-DVDLQGVRSI 110 (198)
T ss_dssp ETTEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHHHHHH
T ss_pred ecCcc-CC--CCHHHHHHHHHcCCcEEE-ECCHHHHHHH
Confidence 99998 43 368889999986432211 2245566554
No 63
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.54 E-value=2.1e-16 Score=149.54 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=95.6
Q ss_pred hhhhhhhHHHHHHhhcCCCCCCCCCCCCCC-CCCCCCCcceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCC
Q 017723 193 NLSNNIVSVERIRQFMHLPPEPPAIIEETK-PPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGS 271 (367)
Q Consensus 193 ~~~~~~~s~~rl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGs 271 (367)
.+..+...+.|+.+.+..|........... .+...+..+.++++|+++.|+.+ ..+|+++ |+|++|++++|+|+|||
T Consensus 91 ~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGs 168 (438)
T 2dpy_A 91 QLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGV 168 (438)
T ss_dssp EEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTS
T ss_pred EEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCC
Confidence 344455566777777665432100000000 00000112358899999999533 4499999 99999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCceEEECCe---ecCCCC-----hhhhhhhceEeecC--ccccccchhhhcC
Q 017723 272 GKTTLISALFRLVEPENGRILIDGL---DICSMG-----LKDLRTKLSIIPQE--PTLFRGSVRTNLD 329 (367)
Q Consensus 272 GKSTl~~ll~g~~~p~~G~I~~~g~---~i~~~~-----~~~~r~~i~~V~Q~--~~lf~~Ti~eNi~ 329 (367)
|||||+++|+|+++|+.|.|.++|. ++.++. ...+++.++||+|+ +...+-|+.+|+.
T Consensus 169 GKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~ 236 (438)
T 2dpy_A 169 GKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYAT 236 (438)
T ss_dssp SHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998 555432 34678899999994 3455678999875
No 64
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.54 E-value=1.3e-16 Score=148.55 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=88.9
Q ss_pred ceeeeeeEecC--CcEEEEEcCCCCCHHHHHHHHHcCCCCCC----ceEEE----CCeecCCCChhhhhhhceEeecCcc
Q 017723 249 VLKGITCTFKE--GTRVGVVGRTGSGKTTLISALFRLVEPEN----GRILI----DGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 249 ~L~~isl~i~~--G~~vaIvG~SGsGKSTl~~ll~g~~~p~~----G~I~~----~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
..+.+++++++ |++++|+|+||||||||+++|+|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99987 46665 5666666 67999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 319 lf~~Ti~eNi~~~~-~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++|++|||.+.. +..+.+....+...+...++..++.+
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 275 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKE 275 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhh
Confidence 99999999997653 33455666666666777777776644
No 65
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.53 E-value=3.8e-16 Score=138.15 Aligned_cols=102 Identities=21% Similarity=0.199 Sum_probs=80.5
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CceEEECCeecCCCChhhhhhhce
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLS 311 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~ 311 (367)
++++|++|. ++|+++| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++..+. +..++
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKS 73 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSS
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcce
Confidence 456677652 3999999 9999999999999999999999999999998 999999998886543 34567
Q ss_pred Eeec-----CccccccchhhhcCCCCC-------CCHHHHHHHHHHc
Q 017723 312 IIPQ-----EPTLFRGSVRTNLDPLGM-------YSDNEIWEAMEKC 346 (367)
Q Consensus 312 ~V~Q-----~~~lf~~Ti~eNi~~~~~-------~~~e~i~~al~~a 346 (367)
+++| ++..|..+++.++....+ .+.+.++.+++.+
T Consensus 74 ~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 74 IVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp EEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH
T ss_pred eeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 8888 666778888888753222 2666666666654
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5e-15 Score=145.38 Aligned_cols=121 Identities=24% Similarity=0.295 Sum_probs=82.3
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE-----------EECCeecCCCChh
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGLK 304 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I-----------~~~g~~i~~~~~~ 304 (367)
+|++++|.++. ..|++++ ++++||.++|+||||||||||+++|+|+++|++|+| .++|.++..+...
T Consensus 81 ~~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 81 AHVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TTEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 35789996554 3777777 689999999999999999999999999999999998 3444444333333
Q ss_pred hhhhhceE--eecCccc----ccc---chhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 305 DLRTKLSI--IPQEPTL----FRG---SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 305 ~~r~~i~~--V~Q~~~l----f~~---Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
.+++.+.. .+|.... +.+ ++.+++.......++++.++++..++.+..+..|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 221 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEK 221 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTT
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHH
Confidence 33334332 2332221 111 455554322334568899999999998877665543
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.4e-14 Score=142.26 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=86.1
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCC-----cEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEG-----TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G-----~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
++++|+|+... .+++++||++++| |+++|+|+||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~~-~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSLK-KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCEE-EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCcc-cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 67889996433 3899999999999 7899999999999999999999999999973 11 2369
Q ss_pred eEeecCcc-ccccchhhhcCC--C-CCCCHHHHHHHHHHcCccHHHhhCccc
Q 017723 311 SIIPQEPT-LFRGSVRTNLDP--L-GMYSDNEIWEAMEKCQLKATISRLPML 358 (367)
Q Consensus 311 ~~V~Q~~~-lf~~Ti~eNi~~--~-~~~~~e~i~~al~~a~l~~~i~~lp~g 358 (367)
+|++|++. .|+.|++||+.. . ...+.+...++++..++.+.....|..
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 467 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQH 467 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhh
Confidence 99999976 578899999742 1 123556778889998887766555543
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.49 E-value=8.3e-16 Score=140.65 Aligned_cols=83 Identities=23% Similarity=0.249 Sum_probs=68.7
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEee
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~ 314 (367)
|+|++| | +++++++|+++++|+.++|+|+||||||||+++|+|+++|++|.|.++|.+ ++....+++++++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 778888 7 248999999999999999999999999999999999999999999999975 333444677888887
Q ss_pred cCccccccchhhhc
Q 017723 315 QEPTLFRGSVRTNL 328 (367)
Q Consensus 315 Q~~~lf~~Ti~eNi 328 (367)
|. ..+.+.+|
T Consensus 224 gg----g~~~r~~l 233 (330)
T 2pt7_A 224 GG----NITSADCL 233 (330)
T ss_dssp BT----TBCHHHHH
T ss_pred CC----ChhHHHHH
Confidence 61 22555555
No 69
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.49 E-value=1.4e-15 Score=135.24 Aligned_cols=95 Identities=16% Similarity=0.065 Sum_probs=55.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc-chhhhcCCCCCC----CH
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMY----SD 336 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-Ti~eNi~~~~~~----~~ 336 (367)
.++||||||||||||+++|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999987733 3456789999999998765 999999876422 23
Q ss_pred HHHHHHHHHcCccHHHhhCcccc
Q 017723 337 NEIWEAMEKCQLKATISRLPMLL 359 (367)
Q Consensus 337 e~i~~al~~a~l~~~i~~lp~gl 359 (367)
+.+.+.++.--.+.....|..|-
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~ 103 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIAR 103 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhhhHHhcCccc
Confidence 45555555322233344555444
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.48 E-value=3.3e-15 Score=139.73 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=75.8
Q ss_pred cceeeeeeEecCCc--------------------EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhh
Q 017723 248 LVLKGITCTFKEGT--------------------RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 307 (367)
Q Consensus 248 ~~L~~isl~i~~G~--------------------~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 307 (367)
.+|+++|+++++|+ .+||+|+||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997653 1
Q ss_pred hhceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccH
Q 017723 308 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 308 ~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~ 350 (367)
.++++|++...+-|+.||+.++. .++++.++++..++.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYE 148 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGG
T ss_pred --eEEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCc
Confidence 27899998656789999986542 2345778888888765
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.47 E-value=1.5e-13 Score=140.12 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=83.1
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
..+...|++++|++ ..+|+|+||++++|++++|+|+||||||||+++|+| |+| +|.+... . ..+
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~----~--~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE----E--CRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----T--SCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----c--eeE
Confidence 36888899999953 349999999999999999999999999999999995 554 5544321 1 237
Q ss_pred eEeecCc-cc-cccchhhhcCCC-CCCCHHHHHHHHHHcCcc-HHHhhCc
Q 017723 311 SIIPQEP-TL-FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLK-ATISRLP 356 (367)
Q Consensus 311 ~~V~Q~~-~l-f~~Ti~eNi~~~-~~~~~e~i~~al~~a~l~-~~i~~lp 356 (367)
+|++|++ .+ .+.|+.||+... ... ++++.++++..++. +.....+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~ 546 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI 546 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc
Confidence 8999985 33 456999998641 112 78899999999994 5555444
No 72
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.46 E-value=3.8e-15 Score=127.10 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=50.0
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
.+|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|++++||+|++
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence 488885 89999999999999999999999999 99999994 333332 2335678899999997
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.45 E-value=1.3e-14 Score=130.81 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=66.0
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC----hhhh--hhhceEeecCcc-cc-c
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LF-R 321 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~--r~~i~~V~Q~~~-lf-~ 321 (367)
++++||++++|+.++|||+|||||||+++.|+|+++|++|+|.++|.|+.... ...| |.++++|+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 34678899999999999999999999999999999999999999999886643 1234 457999999997 65 4
Q ss_pred cchhhhcC
Q 017723 322 GSVRTNLD 329 (367)
Q Consensus 322 ~Ti~eNi~ 329 (367)
.|++||+.
T Consensus 170 ~~v~e~l~ 177 (302)
T 3b9q_A 170 TVLSKAVK 177 (302)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 58899884
No 74
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.45 E-value=2.8e-14 Score=129.06 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=71.6
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE---CCeecCCCChhhhhhhceEeecCcc-------------
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPT------------- 318 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~~i~~V~Q~~~------------- 318 (367)
+++.+|+.++|+|+||||||||+++|.|+.+|++|+|.+ +|.++.........+++++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 9988876553222347999999985
Q ss_pred ---cc-ccchhhhcCCCC----CCCHHHHHHHHHHcCcc-HHHhhCccc
Q 017723 319 ---LF-RGSVRTNLDPLG----MYSDNEIWEAMEKCQLK-ATISRLPML 358 (367)
Q Consensus 319 ---lf-~~Ti~eNi~~~~----~~~~e~i~~al~~a~l~-~~i~~lp~g 358 (367)
+| +-|+ ||+.+.. ....+++.++++..+|. +.....|.-
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 291 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKM 291 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 34 3377 9987632 22456899999999995 666666643
No 75
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.44 E-value=8.4e-15 Score=142.16 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=85.2
Q ss_pred EeeEEEeCCCCCcceeeeeeEec-CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE-----------EECCeecCCCCh
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFK-EGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGL 303 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~-~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I-----------~~~g~~i~~~~~ 303 (367)
++++.+|.++ .++-..+.++ +||.+||+||||||||||+++|+|+++|++|+| .++|.++..+..
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3578899765 4666677777 799999999999999999999999999999999 677766643322
Q ss_pred hh------hhhhceEeecCccccccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCc
Q 017723 304 KD------LRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP 356 (367)
Q Consensus 304 ~~------~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp 356 (367)
.. +...+.++.|.+.++.+|+++++... ...+++.++++..++.+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~l~~l~l~~~~~~~~ 136 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI--DERGKKDEVKELLNMTNLWNKDA 136 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH--CCSSCHHHHHHHTTCGGGTTSBG
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcc--hhHHHHHHHHHHcCCchhhcCCh
Confidence 11 22335566677778888999887421 12346778899998877655443
No 76
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.1e-14 Score=136.19 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=65.0
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcE--EEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~--vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
.+++++ ++.|++ .+ |+++||++++|+. ++|||+||||||||+++|+|+. ++|.++...++...++.
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 356666 778853 23 9999999999999 9999999999999999999994 45666655555556778
Q ss_pred ceEeecCcccc-ccchhhhcCCCCCCC
Q 017723 310 LSIIPQEPTLF-RGSVRTNLDPLGMYS 335 (367)
Q Consensus 310 i~~V~Q~~~lf-~~Ti~eNi~~~~~~~ 335 (367)
+++++|++.++ +-|+.||+.++...+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~ 110 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQIN 110 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CC
T ss_pred EEEEeecCccccccchhhhhhhhhccc
Confidence 99999999987 569999998775544
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.41 E-value=4.2e-14 Score=120.96 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=49.0
Q ss_pred CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc-c
Q 017723 245 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-S 323 (367)
Q Consensus 245 ~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-T 323 (367)
+..++++| .++++|+.++|+||||||||||+++|+|+++ +|.+++.....-+....++.++|++|++.+|+. |
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHH
Confidence 33458888 7999999999999999999999999999996 355554222111122346789999999988764 5
Q ss_pred hhhhc
Q 017723 324 VRTNL 328 (367)
Q Consensus 324 i~eNi 328 (367)
+.+|+
T Consensus 81 ~~~~l 85 (207)
T 1znw_A 81 DQGEL 85 (207)
T ss_dssp HTTCE
T ss_pred hcCCc
Confidence 55665
No 78
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.41 E-value=3e-14 Score=125.65 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=82.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHH---cCCCCCCceEE--------ECCeecC-CCChhhhhhhceEeecC------ccc
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDIC-SMGLKDLRTKLSIIPQE------PTL 319 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~---g~~~p~~G~I~--------~~g~~i~-~~~~~~~r~~i~~V~Q~------~~l 319 (367)
++|+.++|+|+|||||||++++|+ |++.|++|.|+ .+|.++. ......+++++++++|+ .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 55678899999999954 567
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcCC
Q 017723 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSGN 364 (367)
Q Consensus 320 f~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~ 364 (367)
+..++.+||. .+++..++..+..++.+......+...++
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a 143 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQRAFR 143 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHHHTTC
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 7788888874 46677777777777777655554444443
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.40 E-value=4.8e-14 Score=129.60 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=67.0
Q ss_pred eeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC----hhhh--hhhceEeecCcc-cc-cc
Q 017723 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LF-RG 322 (367)
Q Consensus 251 ~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~--r~~i~~V~Q~~~-lf-~~ 322 (367)
+++||++++|+.++|||+|||||||+++.|+|+++|++|+|.++|.|+.... ...| |.++++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4678899999999999999999999999999999999999999999886542 1233 567999999987 54 55
Q ss_pred chhhhcC
Q 017723 323 SVRTNLD 329 (367)
Q Consensus 323 Ti~eNi~ 329 (367)
|++||+.
T Consensus 228 tv~e~l~ 234 (359)
T 2og2_A 228 VLSKAVK 234 (359)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 8889874
No 80
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.39 E-value=9.6e-14 Score=139.17 Aligned_cols=81 Identities=25% Similarity=0.285 Sum_probs=46.2
Q ss_pred CcceeeeeeEecCCcEEEEEcCCCCCHHHHH---------------------HHHHcCCCCC-------CceEEECCeec
Q 017723 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------------------SALFRLVEPE-------NGRILIDGLDI 298 (367)
Q Consensus 247 ~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~---------------------~ll~g~~~p~-------~G~I~~~g~~i 298 (367)
..+|+|+||+|++||+++|+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3489999999999999999999999999998 8999999998 45566666554
Q ss_pred CCCChhhhhhhceEeecCcccc--------------------ccchhhhcCCC
Q 017723 299 CSMGLKDLRTKLSIIPQEPTLF--------------------RGSVRTNLDPL 331 (367)
Q Consensus 299 ~~~~~~~~r~~i~~V~Q~~~lf--------------------~~Ti~eNi~~~ 331 (367)
... .++.+++|+|.+.++ ..|++||+.+.
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~ 159 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFF 159 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC-------
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHh
Confidence 332 245677777765543 45899998753
No 81
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.38 E-value=1.2e-14 Score=143.47 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=59.3
Q ss_pred eEEEEeeEEEeCCCCCcceeee----------eeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCceEEECCeecCC
Q 017723 232 RIELEDLKVRYRPNTPLVLKGI----------TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS 300 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~i----------sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-~~G~I~~~g~~i~~ 300 (367)
.++++|+++.|+...+++|+.+ ++++|. ++|||+||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4889999999964433455555 367775 999999999999999999999988 79999999998632
Q ss_pred C---ChhhhhhhceEeecCccccc-cchhhhc
Q 017723 301 M---GLKDLRTKLSIIPQEPTLFR-GSVRTNL 328 (367)
Q Consensus 301 ~---~~~~~r~~i~~V~Q~~~lf~-~Ti~eNi 328 (367)
. ....+|+.++|++|++.+++ .|++|||
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 2 24578899999999998865 4899987
No 82
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.37 E-value=3.5e-15 Score=136.96 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=73.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh----hhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRT 308 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~ 308 (367)
|+++|+++.|.. ..+|+++|+++++|+.++|+|++|||||||++.|+|++.|++|+|.+.|.+...... ...|.
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 455666667732 248999999999999999999999999999999999999999999999998865432 34578
Q ss_pred hceEeecCccccc
Q 017723 309 KLSIIPQEPTLFR 321 (367)
Q Consensus 309 ~i~~V~Q~~~lf~ 321 (367)
++++++|++.+|.
T Consensus 108 ~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 108 RMARLAIDRNAFI 120 (337)
T ss_dssp GSTTGGGCTTEEE
T ss_pred hheeeccCccccc
Confidence 8999999999986
No 83
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.36 E-value=1.4e-13 Score=130.36 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=67.5
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC----hhh--hhhhceEeecCcccc-cc
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKD--LRTKLSIIPQEPTLF-RG 322 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~----~~~--~r~~i~~V~Q~~~lf-~~ 322 (367)
-+++||++++|++++|||+|||||||+++.|+|++.|++|+|.++|.|..... ... .|++++||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36899999999999999999999999999999999999999999887765431 122 377899999998754 56
Q ss_pred chhhhcC
Q 017723 323 SVRTNLD 329 (367)
Q Consensus 323 Ti~eNi~ 329 (367)
|+++|+.
T Consensus 363 tV~e~l~ 369 (503)
T 2yhs_A 363 VIFDAIQ 369 (503)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8999884
No 84
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.36 E-value=4.1e-13 Score=127.56 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=63.6
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhh--------
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-------- 305 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~-------- 305 (367)
.+.++++.. ..+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~ 82 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGK 82 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGG
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHh
Confidence 355555433 1289999999999 999999999999999999999999999999999999887655432
Q ss_pred hhhhceEeecCcc
Q 017723 306 LRTKLSIIPQEPT 318 (367)
Q Consensus 306 ~r~~i~~V~Q~~~ 318 (367)
++..+.++.+++.
T Consensus 83 ~~~~~~~~~~~~~ 95 (483)
T 3euj_A 83 LKAGVCYAVLETV 95 (483)
T ss_dssp SCSSEEEEEEEEE
T ss_pred cCCCceEEEEehh
Confidence 2334567766654
No 85
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.36 E-value=1.4e-14 Score=131.46 Aligned_cols=90 Identities=16% Similarity=0.242 Sum_probs=75.1
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEe-------------------cCCcEEEEEcCCCCCHHHHHHHHHcCCC--CCCc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTF-------------------KEGTRVGVVGRTGSGKTTLISALFRLVE--PENG 289 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i-------------------~~G~~vaIvG~SGsGKSTl~~ll~g~~~--p~~G 289 (367)
+.|+++||++.|. ++++++++.+ ++|++++|+|+||||||||+++|.|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 3589999999993 3899999998 8999999999999999999999999999 9999
Q ss_pred eEEE---CCeecCCCChhhhhhhceEeecCcccc-ccchhhhcC
Q 017723 290 RILI---DGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD 329 (367)
Q Consensus 290 ~I~~---~g~~i~~~~~~~~r~~i~~V~Q~~~lf-~~Ti~eNi~ 329 (367)
+|.+ ||... + ...++.++++ |+..++ .-|+.+|+.
T Consensus 112 ~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~~~ 150 (308)
T 1sq5_A 112 RVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRLVK 150 (308)
T ss_dssp CEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHHHH
T ss_pred eEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHHHH
Confidence 9999 98764 2 2456778999 876653 347777763
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.34 E-value=2.3e-13 Score=119.44 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=48.7
Q ss_pred CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchh
Q 017723 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (367)
Q Consensus 246 ~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~ 325 (367)
...+|+|+||++++|+.++|+|+|||||||++++|.|++ |.+.++ ..++.+++++|++....-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 345999999999999999999999999999999999977 666654 357789999999744445888
Q ss_pred hhcC
Q 017723 326 TNLD 329 (367)
Q Consensus 326 eNi~ 329 (367)
+|+.
T Consensus 77 ~~~~ 80 (245)
T 2jeo_A 77 QKAK 80 (245)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8863
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.33 E-value=6.5e-13 Score=119.79 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh----hhh--hhhceEeecCcccccc-chhhhc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL--RTKLSIIPQEPTLFRG-SVRTNL 328 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~--r~~i~~V~Q~~~lf~~-Ti~eNi 328 (367)
+|+.++|||+|||||||+++.|+|+++|++|+|.++|.|+..... ..| |.++++|+|++.+++. |+++|+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999876542 233 4679999999987654 777776
No 88
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.32 E-value=7.3e-13 Score=119.72 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=71.4
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE---CCeecCCCChhhhhhhceEeecCccc------cccchh
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPTL------FRGSVR 325 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~~i~~V~Q~~~l------f~~Ti~ 325 (367)
+++.+|+.++++|+||||||||++.|. +.+|.+|+|.+ +|.++...+....++.+++|+|+|.+ .+-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 345679999999999999999999999 99999999999 99888765432222479999999965 34578
Q ss_pred hhc--CCC---------C-----CCCHHHHHHHHHHcCccH-HHhhCcc
Q 017723 326 TNL--DPL---------G-----MYSDNEIWEAMEKCQLKA-TISRLPM 357 (367)
Q Consensus 326 eNi--~~~---------~-----~~~~e~i~~al~~a~l~~-~i~~lp~ 357 (367)
||+ .+. . ....+++.++++..++.+ .....|.
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 286 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK 286 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 887 332 1 123467999999999986 5555443
No 89
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.31 E-value=2.3e-13 Score=117.07 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=65.6
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC--CCceEEECCeecCCCChhhhhhhceEeecCccccccc-h----hhh
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS-V----RTN 327 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p--~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~T-i----~eN 327 (367)
-..++|+.++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..++.++|++|++.+|... . .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 78999998866543 2456899999999998764 4 588
Q ss_pred cCCCCC---CCHHHHHHHHHH
Q 017723 328 LDPLGM---YSDNEIWEAMEK 345 (367)
Q Consensus 328 i~~~~~---~~~e~i~~al~~ 345 (367)
+.+..+ .+.+++.++++.
T Consensus 87 ~~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 87 AEVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EEETTEEEEEEHHHHHHHHTT
T ss_pred HHHHhccCCCCHHHHHHHHhc
Confidence 764332 245667777654
No 90
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.30 E-value=7e-13 Score=113.58 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=64.6
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc---chhhhcC--C
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG---SVRTNLD--P 330 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~---Ti~eNi~--~ 330 (367)
..++|++++|+|+||||||||+++|.|++.| ++++|+||+++++. |+++|+. +
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3578999999999999999999999999875 68999999998854 4666543 2
Q ss_pred CC--CCCHHHHHHHHHHcCccHHHhhCccccCCcCCC
Q 017723 331 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSGNS 365 (367)
Q Consensus 331 ~~--~~~~e~i~~al~~a~l~~~i~~lp~gldt~i~e 365 (367)
.. ..+.+++.++++..++.+.+.. | .++...|+
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~ 94 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYT 94 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTE
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccC
Confidence 21 2456788899998888777765 4 56665554
No 91
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.28 E-value=5.8e-13 Score=133.47 Aligned_cols=67 Identities=28% Similarity=0.268 Sum_probs=50.5
Q ss_pred eeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH---------------------cCCCCCCceEEECC
Q 017723 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF---------------------RLVEPENGRILIDG 295 (367)
Q Consensus 237 nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~---------------------g~~~p~~G~I~~~g 295 (367)
+..+.+......+|+|+||+|++||++||+||||||||||+++++ +-+.+..|.|.++|
T Consensus 325 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~ 404 (670)
T 3ux8_A 325 GRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQ 404 (670)
T ss_dssp SCEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCS
T ss_pred ccceeecCccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEecc
Confidence 334444333345899999999999999999999999999998764 12234457899999
Q ss_pred eecCCCCh
Q 017723 296 LDICSMGL 303 (367)
Q Consensus 296 ~~i~~~~~ 303 (367)
.++...+.
T Consensus 405 ~~~~~~~~ 412 (670)
T 3ux8_A 405 SPIGRTPR 412 (670)
T ss_dssp SCSCSSTT
T ss_pred ccCCCCCC
Confidence 88876553
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.27 E-value=9e-13 Score=121.04 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=66.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC-------Chh
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-------GLK 304 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~-------~~~ 304 (367)
-++.+++++.|+.+ ..+|+++ |+|.+|++++|+|+||||||||+++|+|+.+|+.|.|.+.|.+.++. ...
T Consensus 45 ~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 45 PLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp STTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 48889999999633 4499999 99999999999999999999999999999999999999998653221 222
Q ss_pred hhhhhceEeecC
Q 017723 305 DLRTKLSIIPQE 316 (367)
Q Consensus 305 ~~r~~i~~V~Q~ 316 (367)
.+++.+.+++|.
T Consensus 123 ~~~~~v~~~~~~ 134 (347)
T 2obl_A 123 TLSKCVLVVTTS 134 (347)
T ss_dssp HHTTEEEEEECT
T ss_pred hhhceEEEEECC
Confidence 344456666654
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.26 E-value=4.7e-13 Score=130.41 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=63.9
Q ss_pred EeCCCCCcceeeeee-EecCCcEEEEEcCCCCCHHHHHHH--HHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 241 RYRPNTPLVLKGITC-TFKEGTRVGVVGRTGSGKTTLISA--LFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 241 ~Y~~~~~~~L~~isl-~i~~G~~vaIvG~SGsGKSTl~~l--l~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
+|+.. .++|+++++ .+++|+.++|+|+||||||||++. +.|+++|.+|.|+++|.+. ..+....++.+++++|++
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHH
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHh
Confidence 44433 459999999 999999999999999999999999 6799999999999999873 223345567899999997
Q ss_pred c
Q 017723 318 T 318 (367)
Q Consensus 318 ~ 318 (367)
.
T Consensus 98 ~ 98 (525)
T 1tf7_A 98 V 98 (525)
T ss_dssp H
T ss_pred h
Confidence 6
No 94
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.25 E-value=3.7e-13 Score=116.60 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC---CCCCceEEE--------CCeecCC-CChhhhhhhceEeecCc------ccc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV---EPENGRILI--------DGLDICS-MGLKDLRTKLSIIPQEP------TLF 320 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~---~p~~G~I~~--------~g~~i~~-~~~~~~r~~i~~V~Q~~------~lf 320 (367)
.+.+++|+|+|||||||++++|.+.| .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788899988 7777652 45667899999999986 455
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHcCccHHHhhCccccCCcC
Q 017723 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSG 363 (367)
Q Consensus 321 ~~Ti~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~gldt~i 363 (367)
..++.+++ .++++.+++..+..++.+...+.+.++.+
T Consensus 84 ~~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 120 (227)
T 1cke_A 84 GEDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRAF 120 (227)
T ss_dssp TEECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CeeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56666665 36788999999999999988666655444
No 95
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.24 E-value=5.5e-13 Score=113.93 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=37.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC-----CCCCceEEE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILI 293 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~-----~p~~G~I~~ 293 (367)
|+++|++|+|+ . .++++ |++++|.+++|+|++|||||||++.|.|.. .|+.|++..
T Consensus 4 l~~~~~~~~~~--~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 4 LNYQQTHFVMS--A-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp -------CEEE--E-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred hhhhhhhheee--c-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 78999999995 2 37888 999999999999999999999999999998 888898765
No 96
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.24 E-value=2.7e-12 Score=109.25 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=64.7
Q ss_pred eeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc-chhhhcCC--
Q 017723 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDP-- 330 (367)
Q Consensus 254 sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-Ti~eNi~~-- 330 (367)
|+++++|+.++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. +..+|+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999974 688888888877766678889999999998866 44444421
Q ss_pred --CC---CCCHHHHHHHHHH
Q 017723 331 --LG---MYSDNEIWEAMEK 345 (367)
Q Consensus 331 --~~---~~~~e~i~~al~~ 345 (367)
.. ..+.+++.++++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~ 96 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKA 96 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHT
T ss_pred eeecccccchHHHHHHHHHc
Confidence 11 1234566666655
No 97
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.22 E-value=2.5e-12 Score=115.63 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=59.1
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE---CCeecCCCChhhhhhhceEeecCccccc-----cchhh
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-----GSVRT 326 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~~i~~V~Q~~~lf~-----~Ti~e 326 (367)
+++.+|++++|+|+||+|||||+|.|.|..+|..|+|.+ +|.++.... ..++..+++++|+|.++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 887776533 222223899999998764 467 8
Q ss_pred hcC--CC----------------CCCCHHHHHHHHHHcCccHH
Q 017723 327 NLD--PL----------------GMYSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 327 Ni~--~~----------------~~~~~e~i~~al~~a~l~~~ 351 (367)
|+. +. ...+...+.++++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 872 11 11234578999999999764
No 98
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.21 E-value=5.8e-12 Score=119.21 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=71.8
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC--------------------------
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-------------------------- 285 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-------------------------- 285 (367)
.++++|+ .++++++|++++| +++|+|+||||||||+++|.++..
T Consensus 42 ~L~i~nf---------~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~ 111 (415)
T 4aby_A 42 RLEIRNL---------ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDE 111 (415)
T ss_dssp EEEEEEE---------TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC-----
T ss_pred eehhccc---------cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCC
Confidence 4666664 2799999999999 999999999999999999966653
Q ss_pred ------------CCCceEEECCeecCCCChhhhhhh-ceEeecCccccccchhhh
Q 017723 286 ------------PENGRILIDGLDICSMGLKDLRTK-LSIIPQEPTLFRGSVRTN 327 (367)
Q Consensus 286 ------------p~~G~I~~~g~~i~~~~~~~~r~~-i~~V~Q~~~lf~~Ti~eN 327 (367)
+.+|++++||.+++..+..++++. +++++|++.++-.+-.++
T Consensus 112 ~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~ 166 (415)
T 4aby_A 112 SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQ 166 (415)
T ss_dssp ---CEEEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHH
T ss_pred CceEEEEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHH
Confidence 457899999999987777777777 799999999887665544
No 99
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.19 E-value=4.1e-13 Score=115.58 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=53.3
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCC--------h
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--------L 303 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~--------~ 303 (367)
.|+++|+...|.. ++++++ +.++|+||||||||||+++|+|++.|++|+|.++|.++...+ .
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5889988665521 456666 899999999999999999999999999999999999884332 2
Q ss_pred hhhhhhceEeecC
Q 017723 304 KDLRTKLSIIPQE 316 (367)
Q Consensus 304 ~~~r~~i~~V~Q~ 316 (367)
...+.++++|+|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 3457889999985
No 100
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.19 E-value=6.1e-12 Score=114.53 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=62.3
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChh----hhhhhce--EeecCccccc-cchhhhc
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK----DLRTKLS--IIPQEPTLFR-GSVRTNL 328 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~----~~r~~i~--~V~Q~~~lf~-~Ti~eNi 328 (367)
..++|+.++|+|+|||||||+++.|+|+++|++|+|.++|.|+...... .++++++ +++|++.+++ .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998876643 3445544 9999988775 4888887
Q ss_pred C
Q 017723 329 D 329 (367)
Q Consensus 329 ~ 329 (367)
.
T Consensus 205 ~ 205 (328)
T 3e70_C 205 Q 205 (328)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.18 E-value=6.4e-13 Score=113.64 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=45.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcC
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~ 329 (367)
.++|++++|+|+||||||||+++|.|+++|. | ..+++|+||.+.++.+..+|+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~ 72 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRG 72 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhc
Confidence 5789999999999999999999999999975 4 2577788888888777777763
No 102
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.18 E-value=7.4e-12 Score=105.09 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=68.5
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-------------CCCceEEECCeecCCCChhhhhhhceEeecCccccc
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-------------p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~ 321 (367)
+..-+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+..++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4445799999999999999999999999986 77888 799999999999999886 69999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHH
Q 017723 322 GSVRTNLDPLGMYSDNEIWEAMEK 345 (367)
Q Consensus 322 ~Ti~eNi~~~~~~~~e~i~~al~~ 345 (367)
+++.+|. ++ .+.+.++++++.
T Consensus 89 ~~~~~n~-YG--t~~~~v~~~l~~ 109 (197)
T 3ney_A 89 GSYQGNM-FG--TKFETVHQIHKQ 109 (197)
T ss_dssp EEETTEE-EE--EEHHHHHHHHHT
T ss_pred hhhhcee-cc--cchhhHHHHHhc
Confidence 9999995 44 245556666654
No 103
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.17 E-value=3.4e-12 Score=107.39 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=53.6
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~ 329 (367)
.+++|+.++|+|+|||||||++++|+|. |..|.|.++|.++..... .++.++|++|++. .+.|+.+|+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~ 73 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAA 73 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHH
Confidence 4789999999999999999999999998 778999999977643321 1345678888765 4567777763
No 104
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.17 E-value=7.3e-12 Score=108.50 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=57.6
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-------CCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhc
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEP-------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-------~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi 328 (367)
-+++|+.++|+||||||||||++.|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 7999999999999999999999999996655 445888877542 11 3467888999999888999999
Q ss_pred CCCC
Q 017723 329 DPLG 332 (367)
Q Consensus 329 ~~~~ 332 (367)
.+..
T Consensus 95 ~~~~ 98 (231)
T 4a74_A 95 YVAR 98 (231)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7643
No 105
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.16 E-value=6.4e-12 Score=115.12 Aligned_cols=103 Identities=18% Similarity=0.109 Sum_probs=69.6
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCceEEEC-CeecCCCChhhhhhhceEeecCcccccc-chh
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILID-GLDICSMGLKDLRTKLSIIPQEPTLFRG-SVR 325 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-p~~G~I~~~-g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-Ti~ 325 (367)
-++++++.+ +|+.++|+|+||||||||+++|+|... |..|+|.++ |.+.. ...+..+++++|++.+++. |++
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 577887754 799999999999999999999999999 999999987 75542 2345679999999998865 899
Q ss_pred hhcCCCCCCCHHHH----HHHHHHcCccHHHhhCccc
Q 017723 326 TNLDPLGMYSDNEI----WEAMEKCQLKATISRLPML 358 (367)
Q Consensus 326 eNi~~~~~~~~e~i----~~al~~a~l~~~i~~lp~g 358 (367)
|+-.. ..+.+++ .++++.+++.+|....|..
T Consensus 280 e~~l~--~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~ 314 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQGFVEFHDYLGHCKYRDCKHDA 314 (358)
T ss_dssp TCCCC--CCCHHHHHHTSGGGGGGTTCSSSTTCCSSS
T ss_pred Hhhhc--CCCHHHHHHHHHHHHHHcCCchhcCCCccc
Confidence 87432 3444443 3456666666665554443
No 106
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=5.6e-12 Score=118.30 Aligned_cols=90 Identities=20% Similarity=0.142 Sum_probs=56.0
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhc
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 310 (367)
+.|.++|++++|+. ..++++++|+| +|||+||||||||++.|+|...|..| .+|.++... ....++.+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 35899999999953 34999999998 99999999999999999999886666 244333221 11224578
Q ss_pred eEeecCcccc-ccchhhhcCCCC
Q 017723 311 SIIPQEPTLF-RGSVRTNLDPLG 332 (367)
Q Consensus 311 ~~V~Q~~~lf-~~Ti~eNi~~~~ 332 (367)
++++|++.++ .-|+.||+.++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp ECC------CEEEEEEECC----
T ss_pred EEEEecCCcccceeeeechhhhh
Confidence 9999998876 679999987654
No 107
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.13 E-value=1.7e-11 Score=123.88 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=53.2
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHH-HHcCC-------CC----------------
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISA-LFRLV-------EP---------------- 286 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~l-l~g~~-------~p---------------- 286 (367)
..|+++|+++ . .|+|+||+|++|++++|+|+||||||||++. |.|++ +|
T Consensus 501 ~~L~v~~l~~------~-~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR------N-NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE------T-TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee------c-ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999986 1 6999999999999999999999999999996 66543 22
Q ss_pred --CCc-------eEEECCeecCCCCh
Q 017723 287 --ENG-------RILIDGLDICSMGL 303 (367)
Q Consensus 287 --~~G-------~I~~~g~~i~~~~~ 303 (367)
.+| .|.+||.++...++
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~r 599 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPR 599 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTT
T ss_pred ccccCcccccceEEEECCeeCCCCcc
Confidence 467 68999988865443
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.12 E-value=6.4e-12 Score=105.38 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
|++++|+|+||||||||+++|+|+++ ++| |.+||.+..+++ .+++++++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec
Confidence 78999999999999999999999999 999 999999887654 5789999999985
No 109
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.12 E-value=1.3e-12 Score=122.63 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=71.4
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC----ChhhhhhhceEee---------c
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTKLSIIP---------Q 315 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~----~~~~~r~~i~~V~---------Q 315 (367)
+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++... +...+++.+++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999999877421 1223455666655 9
Q ss_pred Ccccc--c-----cchhhhcCCC----------CCCCHHHHHHHHHHcCccHH
Q 017723 316 EPTLF--R-----GSVRTNLDPL----------GMYSDNEIWEAMEKCQLKAT 351 (367)
Q Consensus 316 ~~~lf--~-----~Ti~eNi~~~----------~~~~~e~i~~al~~a~l~~~ 351 (367)
+|.++ . .|+.+|+... ...+..+..+.+...++.++
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 99863 2 3788887421 11122344456666676654
No 110
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.11 E-value=1.4e-11 Score=106.94 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=22.9
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH-cCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLV 284 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~-g~~ 284 (367)
..+++||++++|+.++|+|||||||||++++|+ |++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 678999999999999999999999999999999 999
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.10 E-value=2.1e-11 Score=112.32 Aligned_cols=91 Identities=24% Similarity=0.280 Sum_probs=72.2
Q ss_pred ceeee-eeEecCCcEEEEEcCCCCCHHHHHHHHHcCC--CCCC----ce-EEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 249 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPEN----GR-ILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 249 ~L~~i-sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~--~p~~----G~-I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
.|+.+ +..+++|+.++|+|++|||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6666 67 999986541 356899999999999
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHH
Q 017723 321 RGSVRTNLDPLGMYSDNEIWEAMEK 345 (367)
Q Consensus 321 ~~Ti~eNi~~~~~~~~e~i~~al~~ 345 (367)
..++.+||.+....+.+...+.++.
T Consensus 193 ~~~v~~ni~~~~~~~~~~~~~~l~~ 217 (349)
T 1pzn_A 193 PDEVLKHIYVARAFNSNHQMLLVQQ 217 (349)
T ss_dssp HHHHGGGEEEEECCSHHHHHHHHHH
T ss_pred HHHHhhCEEEEecCChHHHHHHHHH
Confidence 9999999976543343444444443
No 112
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.10 E-value=1.9e-11 Score=101.95 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=62.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCceEE----------ECCeecCCCChhhhhhhceEeecCccccccchhh
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRIL----------IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-~~G~I~----------~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~e 326 (367)
.+|+.++|+||||||||||+++|++++++ ..|.|. ++|.++...+.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999874 445553 36777777777777764 57889999999999
Q ss_pred hcCCCCCCCHHHHHHHHHH
Q 017723 327 NLDPLGMYSDNEIWEAMEK 345 (367)
Q Consensus 327 Ni~~~~~~~~e~i~~al~~ 345 (367)
|. ++ .+.+.++++++.
T Consensus 80 n~-yg--~~~~~i~~~l~~ 95 (180)
T 1kgd_A 80 AM-YG--TKLETIRKIHEQ 95 (180)
T ss_dssp EE-EE--EEHHHHHHHHHT
T ss_pred cc-cc--ccHHHHHHHHHC
Confidence 94 33 235666666653
No 113
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.05 E-value=8.1e-11 Score=113.42 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=68.3
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc--chh
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG--SVR 325 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~--Ti~ 325 (367)
.+++++++.+++|+.++|+|+|||||||++++|+|+++|++|.|.++|.+--.++. +..++++.|+.. ..+ |.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 36889999999999999999999999999999999999999999999865222221 345667776654 322 455
Q ss_pred hhcCC----------CCCCCHHHHHHHHHHc
Q 017723 326 TNLDP----------LGMYSDNEIWEAMEKC 346 (367)
Q Consensus 326 eNi~~----------~~~~~~e~i~~al~~a 346 (367)
+++.. .++..++|...+++.+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~ 354 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAM 354 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhh
Confidence 44421 1245555666666554
No 114
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.04 E-value=4.6e-12 Score=113.49 Aligned_cols=90 Identities=9% Similarity=0.005 Sum_probs=58.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcCCCCC----
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---- 333 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~---- 333 (367)
+++.+++|+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+.++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999874 2 0 1 445666799999999999999853210
Q ss_pred CCHHHHHHHHHHcCccHHHhhCccccCCcC
Q 017723 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSG 363 (367)
Q Consensus 334 ~~~e~i~~al~~a~l~~~i~~lp~gldt~i 363 (367)
.+.....++.+...+.+++..+++|++|..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~ 122 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPD 122 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCcccc
Confidence 000000112223446678888899988753
No 115
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.03 E-value=1.2e-10 Score=118.14 Aligned_cols=44 Identities=32% Similarity=0.477 Sum_probs=38.7
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
..++++|++. ..|+|+||+|++|+.++|+|+||||||||++.++
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3588998852 2799999999999999999999999999999854
No 116
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.03 E-value=4.6e-11 Score=98.73 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=26.9
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHH
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISA 279 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~l 279 (367)
|+||++++||.++|+|+||||||||+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHH
Confidence 6899999999999999999999999994
No 117
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.01 E-value=3.9e-11 Score=109.26 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=62.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC--------CCCCceEEECCeecCCCC---------------hhhhhhhceEe---
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV--------EPENGRILIDGLDICSMG---------------LKDLRTKLSII--- 313 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~--------~p~~G~I~~~g~~i~~~~---------------~~~~r~~i~~V--- 313 (367)
-+.++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ +.++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999998 889999999999998764 45778889988
Q ss_pred ecCccc-cccchhhhcCCC
Q 017723 314 PQEPTL-FRGSVRTNLDPL 331 (367)
Q Consensus 314 ~Q~~~l-f~~Ti~eNi~~~ 331 (367)
+|++.+ |+.++.||..++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHHTSCCCSEEEEEEETTC
T ss_pred HhcCCCCCCEEEEeCCCCC
Confidence 788774 788999998765
No 118
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.99 E-value=1.3e-10 Score=104.96 Aligned_cols=84 Identities=27% Similarity=0.228 Sum_probs=35.6
Q ss_pred EeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC-CCCCCceEEECCeecCCCChhhhhhhceEee
Q 017723 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~-~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~ 314 (367)
+|++..|.+ ..++++++|+| +|+|+||+|||||++.|.|. ..|++| |.++|.++.. +. -++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEe
Confidence 477888853 34999999988 99999999999999999998 889999 8888877654 11 246789999
Q ss_pred cCcccc-ccchhhhcCCC
Q 017723 315 QEPTLF-RGSVRTNLDPL 331 (367)
Q Consensus 315 Q~~~lf-~~Ti~eNi~~~ 331 (367)
|++.++ .-|+.|+..++
T Consensus 70 q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp C---CCEEEEEEEEC---
T ss_pred cCCCcccCcchhhhhhhh
Confidence 987654 56899988653
No 119
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.98 E-value=1.8e-11 Score=107.43 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=57.0
Q ss_pred EEEEeeEEEeCCCCCcceeeee-eEecCCcEEEEEcCCCCCHHHHHHHHH--cCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 233 IELEDLKVRYRPNTPLVLKGIT-CTFKEGTRVGVVGRTGSGKTTLISALF--RLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~is-l~i~~G~~vaIvG~SGsGKSTl~~ll~--g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
++++++++.|+ .|+++- =.+++|+.++|+||||||||||++.|+ ++.++.+|.+++++.+..+ .....++.
T Consensus 7 ~~~~~i~tg~~-----~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIP-----GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCT-----TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCH-----hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 45566666554 344431 179999999999999999999999999 7767778888887743221 12234567
Q ss_pred ceEeecCccc
Q 017723 310 LSIIPQEPTL 319 (367)
Q Consensus 310 i~~V~Q~~~l 319 (367)
+++++|++..
T Consensus 81 ~g~~~~~~~~ 90 (251)
T 2ehv_A 81 FGWDFEKYEK 90 (251)
T ss_dssp TTCCHHHHHH
T ss_pred cCCChHHHhh
Confidence 8999988643
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.97 E-value=1.1e-10 Score=107.36 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=61.1
Q ss_pred EeeEEEeCCCCCcceeeeee-------EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CceEEECCeecCCCChhhhh
Q 017723 236 EDLKVRYRPNTPLVLKGITC-------TFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLR 307 (367)
Q Consensus 236 ~nvsf~Y~~~~~~~L~~isl-------~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r 307 (367)
.+++++|.+...+.|+++.+ ..++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---hh
Confidence 57888886666678888887 78899999999999999999999999999998 577766554442 22 23
Q ss_pred hhceEeecCcc
Q 017723 308 TKLSIIPQEPT 318 (367)
Q Consensus 308 ~~i~~V~Q~~~ 318 (367)
...++++|...
T Consensus 168 ~~~~~v~q~~~ 178 (356)
T 3jvv_A 168 SKKCLVNQREV 178 (356)
T ss_dssp CSSSEEEEEEB
T ss_pred ccccceeeeee
Confidence 45667777654
No 121
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.96 E-value=1.4e-10 Score=97.13 Aligned_cols=78 Identities=17% Similarity=0.303 Sum_probs=57.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC-------------CCCceEEECCeecCCCChhhhhhhceEeecCccccccchhh
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~-------------p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~e 326 (367)
|+.++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.++..+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 778876 78777666666666553 3566677777777
Q ss_pred hcCCCCCCCHHHHHHHHHH
Q 017723 327 NLDPLGMYSDNEIWEAMEK 345 (367)
Q Consensus 327 Ni~~~~~~~~e~i~~al~~ 345 (367)
|+ ++ .+.+++.++++.
T Consensus 76 ~~-yg--~~~~~i~~~l~~ 91 (186)
T 3a00_A 76 NY-YG--STVASVKQVSKS 91 (186)
T ss_dssp EE-EE--EEHHHHHHHHHT
T ss_pred ee-cc--CcHHHHHHHHHc
Confidence 65 22 234556666654
No 122
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.95 E-value=9e-11 Score=97.47 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=38.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999995 667887665443225678999999987
No 123
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.95 E-value=4.5e-10 Score=114.34 Aligned_cols=44 Identities=30% Similarity=0.535 Sum_probs=38.8
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
..++++|++. ..|+|+||+|++|++++|+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3589999852 2799999999999999999999999999999854
No 124
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.93 E-value=4.6e-10 Score=114.44 Aligned_cols=30 Identities=40% Similarity=0.522 Sum_probs=28.8
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHH
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLI 277 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~ 277 (367)
..|+|+||+|++|++++|+|+||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 379999999999999999999999999997
No 125
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.90 E-value=1.4e-10 Score=101.45 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=35.5
Q ss_pred eEEEEee-EEEeCCCCCcceeeeeeEecC---CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 232 RIELEDL-KVRYRPNTPLVLKGITCTFKE---GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 232 ~I~~~nv-sf~Y~~~~~~~L~~isl~i~~---G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-++++|+ +|+|+ +...+|+|+||+|++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99993 234599999999999 9999999999999999999999844
No 126
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.90 E-value=1.4e-10 Score=103.30 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=67.7
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCc-cccc-cchh
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFR-GSVR 325 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~-~lf~-~Ti~ 325 (367)
.+++++++++++| ++|+||+|||||||++.|+|.+.+ |.|.++|.++........++++++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3889999999999 999999999999999999999987 79999999887776677788999999986 3333 4677
Q ss_pred hhcCC
Q 017723 326 TNLDP 330 (367)
Q Consensus 326 eNi~~ 330 (367)
||+..
T Consensus 110 Deid~ 114 (274)
T 2x8a_A 110 DEVDA 114 (274)
T ss_dssp ETCTT
T ss_pred ehhhh
Confidence 88864
No 127
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.89 E-value=4.8e-10 Score=116.14 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=57.8
Q ss_pred ceEEEEe-----eEEEeCCCCCcceeeeeeEecC-------CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeec
Q 017723 231 GRIELED-----LKVRYRPNTPLVLKGITCTFKE-------GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (367)
Q Consensus 231 ~~I~~~n-----vsf~Y~~~~~~~L~~isl~i~~-------G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i 298 (367)
+.|+++| |++.|+++ ..+++|++|++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 3599999 99999533 4599999999987 999999999999999999999 99863
Q ss_pred CCCChhhhhhhce-EeecCccccccchhhhcC
Q 017723 299 CSMGLKDLRTKLS-IIPQEPTLFRGSVRTNLD 329 (367)
Q Consensus 299 ~~~~~~~~r~~i~-~V~Q~~~lf~~Ti~eNi~ 329 (367)
+.++| ||||++. .-|+.|||.
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~ 836 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVF 836 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEE
T ss_pred --------HhheeEEeccCcC--CCCHHHHHH
Confidence 34676 9999974 667888873
No 128
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.88 E-value=8.3e-10 Score=93.80 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
+++++|+.++|+|+|||||||++++|.+++.|+.| +.+ +...++.. ...+..+++++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 47899999999999999999999999999977655 222 22222211 11223477888876433
No 129
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.87 E-value=8e-10 Score=100.78 Aligned_cols=90 Identities=14% Similarity=0.280 Sum_probs=70.9
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC---------------------------
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--------------------------- 284 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~--------------------------- 284 (367)
.|+++|. .+|. +++++++++| .++|+|+||||||||+++|..++
T Consensus 5 ~L~i~nf-r~~~-------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~ 75 (322)
T 1e69_A 5 KLYLKGF-KSFG-------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPA 75 (322)
T ss_dssp EEEEESB-TTBC-------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCC
T ss_pred EEEEeCc-eeec-------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCC
Confidence 4777772 2231 3578888999 99999999999999999998443
Q ss_pred -----------------------CCCCceEEECCeecCCCChhhhhhhceEeecCcccc-ccchhhhcCC
Q 017723 285 -----------------------EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDP 330 (367)
Q Consensus 285 -----------------------~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf-~~Ti~eNi~~ 330 (367)
.+.+|++++||.+++..+...+...+++.+|+..++ .|++.+|+..
T Consensus 76 ~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~ 145 (322)
T 1e69_A 76 GSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNA 145 (322)
T ss_dssp SEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC
T ss_pred ceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhc
Confidence 445679999999886666677777899999998865 8899998864
No 130
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.84 E-value=4.4e-10 Score=101.28 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=54.8
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc-eEEECCeecCCCChhhhhhhceEeecCc
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
.+|+++++.+++|+.++|+|+||||||||++.|++...|.+| .|.+.+.+ .+...+++++..+.|+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~ 90 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRV 90 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCC
Confidence 389999999999999999999999999999999999999988 77664433 35566666666665554
No 131
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.83 E-value=1.5e-10 Score=98.09 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=45.9
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE--EECCeecCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI--LIDGLDICS 300 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I--~~~g~~i~~ 300 (367)
..+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++..
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 6678888899999999999999999999999999998 78998 999977753
No 132
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.82 E-value=6.4e-10 Score=94.24 Aligned_cols=69 Identities=19% Similarity=0.091 Sum_probs=50.2
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcccccc-chhhhc
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNL 328 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~-Ti~eNi 328 (367)
++.++|+.++|+|+|||||||++++|.+.+ |.+.++|.++... ....+...++++|++..+.. ++.+|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 667889999999999999999999999987 8999999777531 11223357899998776543 555554
No 133
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.82 E-value=9.7e-10 Score=91.52 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=65.2
Q ss_pred eeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe--ecCCCCh----hhhhhhceEeecCcc------
Q 017723 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL--DICSMGL----KDLRTKLSIIPQEPT------ 318 (367)
Q Consensus 251 ~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~--~i~~~~~----~~~r~~i~~V~Q~~~------ 318 (367)
+++++++.+| .++|+|+|||||||++++|.+++.+..|...-.+. ++-.... ...+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999998887776543321 1111110 023457999999863
Q ss_pred ----ccccchhhh----cCC-CCCCCHHHHHHHHHHcCccH
Q 017723 319 ----LFRGSVRTN----LDP-LGMYSDNEIWEAMEKCQLKA 350 (367)
Q Consensus 319 ----lf~~Ti~eN----i~~-~~~~~~e~i~~al~~a~l~~ 350 (367)
.+..++.++ +.. +...+.+++.+.++.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 222222221 111 12346788999998887754
No 134
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.80 E-value=8e-10 Score=94.12 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=43.9
Q ss_pred eeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcCC
Q 017723 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 330 (367)
Q Consensus 253 isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~ 330 (367)
+-=++++|+.++|+|+|||||||++++|.+.++ .+.+++||++++++ +|+..
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCB
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhc
Confidence 344678899999999999999999999999875 47899999999876 56643
No 135
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.76 E-value=4.2e-10 Score=98.60 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH---cCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccc-cchhhhcC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALF---RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLD 329 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~---g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~-~Ti~eNi~ 329 (367)
+++.++|+|++||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.+++ .|+.+|+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~ 96 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMM 96 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 47999999999999999999999 999999999999876532 234556677778776554 47777763
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.75 E-value=3.7e-09 Score=92.06 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=54.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHc--CCCC-----CCceEEECCeecCC-CChhhhhhhceEeecCccccccchhhh
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFR--LVEP-----ENGRILIDGLDICS-MGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g--~~~p-----~~G~I~~~g~~i~~-~~~~~~r~~i~~V~Q~~~lf~~Ti~eN 327 (367)
-+++|+.++|+|++|||||||++.+++ ..+| ..|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5665 67899998865211 1133456678887765 5677
Q ss_pred cCCCCCCCHHH
Q 017723 328 LDPLGMYSDNE 338 (367)
Q Consensus 328 i~~~~~~~~e~ 338 (367)
+.+....+.++
T Consensus 93 ~~~~~~~~~~~ 103 (243)
T 1n0w_A 93 VAYARAFNTDH 103 (243)
T ss_dssp EEEEECCSHHH
T ss_pred eEEEecCCHHH
Confidence 75433334444
No 137
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.75 E-value=2e-09 Score=97.69 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=63.0
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCCh----hhh-----hhhceEe-ecCcc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL-----RTKLSII-PQEPT 318 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~-----r~~i~~V-~Q~~~ 318 (367)
++++++|++++|+.++++|++|+||||++..|++.+.+..|+|.+.+.|...... ..| +.++.++ +|.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3467888899999999999999999999999999999999999999888765431 344 6789999 77755
Q ss_pred cccc-chhhhc
Q 017723 319 LFRG-SVRTNL 328 (367)
Q Consensus 319 lf~~-Ti~eNi 328 (367)
..+. ++.+++
T Consensus 174 ~~p~~~~~~~l 184 (320)
T 1zu4_A 174 ADPASVVFDAI 184 (320)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 5443 455665
No 138
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.74 E-value=2.1e-09 Score=107.25 Aligned_cols=106 Identities=23% Similarity=0.138 Sum_probs=84.6
Q ss_pred eeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC--CCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcC--
Q 017723 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-- 329 (367)
Q Consensus 254 sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p--~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~-- 329 (367)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456789999999999999999999999987765 77999 7899999999999999999999999999999999984
Q ss_pred CCCCCCHHHHHHHHHHcCccHHHhhCccccC
Q 017723 330 PLGMYSDNEIWEAMEKCQLKATISRLPMLLD 360 (367)
Q Consensus 330 ~~~~~~~e~i~~al~~a~l~~~i~~lp~gld 360 (367)
++...-..++..+++.+...-++-...+|++
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~ 112 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVSAEAGVQ 112 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTTCSC
T ss_pred CCccchHHHHHHHHhhcCcEEEEEcCCcccc
Confidence 3322123567888888877666555555544
No 139
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.72 E-value=3.2e-11 Score=110.68 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=69.7
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCC-------cEEEEEcCCCCCHHHHHHHHHcCC----CCCCceEEECCeecCCC
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEG-------TRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSM 301 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G-------~~vaIvG~SGsGKSTl~~ll~g~~----~p~~G~I~~~g~~i~~~ 301 (367)
++.++++..|.. ..+++++++.+++| +.++|+||+|+|||||++++++.+ .|.+|.+..++.++..+
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 344455555532 23899999999877 899999999999999999999998 77888888777665433
Q ss_pred ChhhhhhhceEeecCccccccchhhhc
Q 017723 302 GLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (367)
Q Consensus 302 ~~~~~r~~i~~V~Q~~~lf~~Ti~eNi 328 (367)
.....+..+.++.|...++. ++.|++
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L 122 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELL 122 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHH
Confidence 21222457999999887775 777776
No 140
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.72 E-value=2.6e-09 Score=107.36 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=58.7
Q ss_pred cceEEEEeeEEEeCC---CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCceEEECCeecCCCChhh
Q 017723 230 HGRIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGLKD 305 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~---~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~-p~~G~I~~~g~~i~~~~~~~ 305 (367)
.+.|++++. ++|- ....+++|+||+ |+.++|+|||||||||++++++|+.. |+.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 346888887 4442 345699999999 99999999999999999999999874 67786531 1
Q ss_pred hhhhceEeecCccccc-cchhhhcCCC
Q 017723 306 LRTKLSIIPQEPTLFR-GSVRTNLDPL 331 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~-~Ti~eNi~~~ 331 (367)
.+..+++++| +|. -++.||+..+
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g 635 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG 635 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C
T ss_pred hccceeeHHH---hhccCCHHHHHHhc
Confidence 2456888887 555 4899998654
No 141
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=4.2e-09 Score=89.72 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=49.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCceEE----------ECCeecCCCChhhhhhhceEeecCccccccchhh
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRIL----------IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-~~G~I~----------~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~e 326 (367)
++|+.++|+|||||||||+++.|++.++| ..+.+. .+|.+....+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999987 333332 345555556666666654 5666777766666
Q ss_pred hc
Q 017723 327 NL 328 (367)
Q Consensus 327 Ni 328 (367)
|.
T Consensus 83 ~~ 84 (208)
T 3tau_A 83 NY 84 (208)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 142
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.71 E-value=1.9e-09 Score=90.39 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc-cccchhhhc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL-FRGSVRTNL 328 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l-f~~Ti~eNi 328 (367)
|+.++|+|+|||||||+++.|++ |.+|.+.++|.++.+. ...++++|.+.. ...|+++|+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l 62 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNI 62 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHH
Confidence 67899999999999999999997 6789999998665332 245677776643 344777775
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.70 E-value=6.4e-09 Score=97.04 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=53.7
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHH--HcCCCCCCc-----eEEECCeec-CCCChhhhhhhceEeecCccccccchhh
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENG-----RILIDGLDI-CSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll--~g~~~p~~G-----~I~~~g~~i-~~~~~~~~r~~i~~V~Q~~~lf~~Ti~e 326 (367)
=-|++|+.+.|+|+||||||||++.+ .+..+|+.| .+++++.+. .......+++++++.+| ++.+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vle 245 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALN 245 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhh
Confidence 36899999999999999999999944 567766444 899988653 22223345667777666 5788
Q ss_pred hcCCCCCCCHH
Q 017723 327 NLDPLGMYSDN 337 (367)
Q Consensus 327 Ni~~~~~~~~e 337 (367)
|+.+....+.+
T Consensus 246 ni~~~~~~~~~ 256 (400)
T 3lda_A 246 NVAYARAYNAD 256 (400)
T ss_dssp TEEEEECCSHH
T ss_pred cEEEeccCChH
Confidence 88655444433
No 144
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=7.2e-09 Score=87.59 Aligned_cols=44 Identities=25% Similarity=0.247 Sum_probs=24.9
Q ss_pred EeCCC-CCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 241 RYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 241 ~Y~~~-~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+|+++ ..++++|+||++++|+.++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45443 346999999999999999999999999999999999765
No 145
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.67 E-value=1.7e-09 Score=104.98 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=63.9
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc-eEE-ECCeecCC-------CCh---hhhhhhceEeecCcccccc
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RIL-IDGLDICS-------MGL---KDLRTKLSIIPQEPTLFRG 322 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G-~I~-~~g~~i~~-------~~~---~~~r~~i~~V~Q~~~lf~~ 322 (367)
..+++|+.++|+|+||||||||+++|++.+.|++| ++. +||.++.+ ++. ..+++.+++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36789999999999999999999999999999987 784 89977643 222 23566789999873
Q ss_pred chhhhcCCCC-----CCCHHHHHHHHHHcC
Q 017723 323 SVRTNLDPLG-----MYSDNEIWEAMEKCQ 347 (367)
Q Consensus 323 Ti~eNi~~~~-----~~~~e~i~~al~~a~ 347 (367)
+..+|+.... ....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 4556653221 123456777777665
No 146
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.67 E-value=8.6e-10 Score=95.59 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=51.0
Q ss_pred eeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC------Chhh----hhhhceEeecCccccc
Q 017723 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------GLKD----LRTKLSIIPQEPTLFR 321 (367)
Q Consensus 253 isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~------~~~~----~r~~i~~V~Q~~~lf~ 321 (367)
-+.+.++|+.++|+|++||||||++++|.++ .|+|.+++.+...+ .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3456688999999999999999999999998 79999998876432 1111 2467899999887754
No 147
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.67 E-value=4.1e-09 Score=96.18 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=49.0
Q ss_pred cceEEEEeeEEEeCCCCCccee--------------eeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 230 HGRIELEDLKVRYRPNTPLVLK--------------GITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~--------------~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.+.+.|+||+|.||.. +..|+ |+++.+.+|++++|+|++|+|||||+++|.+..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4579999999999765 45888 899999999999999999999999999999975
No 148
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.63 E-value=1.3e-09 Score=97.22 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=70.8
Q ss_pred EEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEe
Q 017723 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (367)
Q Consensus 234 ~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V 313 (367)
+++++...|.. +.+++++++++++| ++|+||+|||||||++.|.+... .|.|.+++.++.+......++++.++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45666666632 34899999999999 99999999999999999999986 79999999887666556667788889
Q ss_pred ecCcc-cc-ccchhhhc
Q 017723 314 PQEPT-LF-RGSVRTNL 328 (367)
Q Consensus 314 ~Q~~~-lf-~~Ti~eNi 328 (367)
+|++. .+ .-++.||+
T Consensus 125 ~~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEI 141 (278)
T ss_dssp HHHHHTSCSEEEEEETH
T ss_pred HHHHHhcCCcEEehhhh
Confidence 99875 33 34667777
No 149
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.62 E-value=6.1e-09 Score=89.98 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=52.9
Q ss_pred Ccceeeeee-EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhh---hhceEeecCc
Q 017723 247 PLVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR---TKLSIIPQEP 317 (367)
Q Consensus 247 ~~~L~~isl-~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r---~~i~~V~Q~~ 317 (367)
.+.|+++.. .+++|+.++|+|++|||||||++.+++...+.+|.+.+.+.+. +.+.++ ..+++.+|+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGG
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHH
Confidence 347889887 8999999999999999999999999999888889998876543 333332 2455555543
No 150
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.61 E-value=1.6e-09 Score=95.30 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=71.4
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
.+++++...|.. +.+++++++++++| +.|+||+|||||||++.+.+... .|.+.++|.++.+......++++..
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 456777766632 34899999999999 99999999999999999999886 7999999987766555666778888
Q ss_pred eecCcc-cc-ccchhhhc
Q 017723 313 IPQEPT-LF-RGSVRTNL 328 (367)
Q Consensus 313 V~Q~~~-lf-~~Ti~eNi 328 (367)
++|+.. .+ .-++.||+
T Consensus 100 ~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHHTTSSSEEEEEETH
T ss_pred HHHHHHhcCCeEEEehhh
Confidence 898864 33 34666777
No 151
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.59 E-value=8.7e-09 Score=95.30 Aligned_cols=64 Identities=27% Similarity=0.279 Sum_probs=51.1
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
.+++++++.+++|+.++|+||+|||||||+++|+|.+ +|++..- +.+.+.++..+++++|.+.+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~-----~~~~~~~~~~lg~~~q~~~~ 220 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV-----NLPLDRLNFELGVAIDQFLV 220 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC-----SSCTTTHHHHHGGGTTCSCE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE-----eccchhHHHHHHHhcchhHH
Confidence 4899999999999999999999999999999999864 6777651 12223345568899998765
No 152
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.45 E-value=4.6e-08 Score=82.78 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=39.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~ 301 (367)
..++|+.++|+|+|||||||+++.|.+.+++..|.|.+.+.|....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 4678999999999999999999999999999899998876554433
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.44 E-value=1.3e-07 Score=75.80 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=39.5
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc--eEEECCeecCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDICS 300 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G--~I~~~g~~i~~ 300 (367)
+|+++ +|+.++|+|++|||||||++++.+.+.+ +| .+++++.++..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH
Confidence 46666 8999999999999999999999999987 58 88888866543
No 154
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.43 E-value=7.5e-08 Score=79.39 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=39.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhh-hceEeecC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KLSIIPQE 316 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~-~i~~V~Q~ 316 (367)
++|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .++++.|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 469999999999999999999999876 889999876643 122222 35555554
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.40 E-value=2.2e-08 Score=89.84 Aligned_cols=62 Identities=24% Similarity=0.153 Sum_probs=53.2
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
+.++++++.|++.. ++++++ +|+.++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 77 ~~~~~l~~~~~~~~----~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHHCCCC----ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 56677778885321 678888 899999999999999999999999999999999999888764
No 156
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.36 E-value=7.8e-08 Score=86.88 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=38.6
Q ss_pred cceeeeeeEecCCc------EEEEEcCCCCCHHHHHHHHHcCCC--CCCceEEE
Q 017723 248 LVLKGITCTFKEGT------RVGVVGRTGSGKTTLISALFRLVE--PENGRILI 293 (367)
Q Consensus 248 ~~L~~isl~i~~G~------~vaIvG~SGsGKSTl~~ll~g~~~--p~~G~I~~ 293 (367)
..|++++..+.+++ .++|+|+|||||||+++.|.++++ |..|.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 37888888888876 899999999999999999999988 45566444
No 157
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=1.6e-07 Score=86.47 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc-CCCCCCceEEECCeecCCCChhhhhhhceEeecCccc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g-~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~l 319 (367)
++..+.|+||+|+||||+++.++| ++.|..|++.++|.+...... .+..+++++|++++
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHL 94 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceE
Confidence 334599999999999999999999 899999999999987754332 36789999998876
No 158
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.33 E-value=2.3e-07 Score=86.97 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=33.2
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
--++++|+++.|+.++|||++|||||||++.|++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 35799999999999999999999999999999998
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.33 E-value=1.2e-07 Score=79.43 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-----------CCceEEECCeec
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEP-----------ENGRILIDGLDI 298 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p-----------~~G~I~~~g~~i 298 (367)
+++|+|++|||||||++.+.|...| ..|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 6999999999999999999998765 579999999765
No 160
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.31 E-value=1.7e-07 Score=80.02 Aligned_cols=47 Identities=26% Similarity=0.166 Sum_probs=38.6
Q ss_pred cceeeeee-EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe
Q 017723 248 LVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 296 (367)
Q Consensus 248 ~~L~~isl-~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~ 296 (367)
+.|+++.. .+++|+.++|+|++|||||||++.+++ ++..+.++++..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 36777765 799999999999999999999999999 555566676653
No 161
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.30 E-value=1.7e-07 Score=84.37 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=42.7
Q ss_pred eeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 253 isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
++++.++|+.++|+|++||||||++..|++.+.+..|+|.+.+.|...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 355567899999999999999999999999999999999998887654
No 162
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.29 E-value=4.6e-07 Score=92.89 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=48.2
Q ss_pred ceEEEEeeEEEeCC---CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHH--------HcCCCCCCce
Q 017723 231 GRIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--------FRLVEPENGR 290 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~---~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll--------~g~~~p~~G~ 290 (367)
+.|.+++...-+-. +.+.+++|++|++++|+.++|+|||||||||+++.+ .|.+-|.++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 35888876543311 234699999999999999999999999999999999 8888776653
No 163
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.24 E-value=1.2e-07 Score=78.44 Aligned_cols=41 Identities=34% Similarity=0.412 Sum_probs=34.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc--eEEECCeecC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDIC 299 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G--~I~~~g~~i~ 299 (367)
++|+.++|+|++||||||+++.|.+.++| .| .|.+|+..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998866 56 6777775554
No 164
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.19 E-value=2.1e-07 Score=77.09 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=33.7
Q ss_pred eeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCce
Q 017723 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 290 (367)
Q Consensus 254 sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~ 290 (367)
++++++|+.++|+||+|+|||||++.+++.+.|.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5778899999999999999999999999999877773
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.17 E-value=5.5e-07 Score=88.99 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=55.7
Q ss_pred cceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCC-ceEEECCeecCCCChhhhhhhceEeecCc
Q 017723 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (367)
Q Consensus 248 ~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~-G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~ 317 (367)
.+++++++.+++|+.+.|+||+|+|||||++.|.+++++.. |.+.+++.+.... ...++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 48999999999999999999999999999999999999988 8898888765543 34577777654
No 166
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.16 E-value=3.3e-07 Score=78.87 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH---cCCCCCCceEE--------ECCeecCCCC-hhhhhhhceEee------cCcccc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDICSMG-LKDLRTKLSIIP------QEPTLF 320 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~---g~~~p~~G~I~--------~~g~~i~~~~-~~~~r~~i~~V~------Q~~~lf 320 (367)
.+-.++|+|+|||||||+++.|. |+...+.|.++ -+|.+..+.. ...+.+++.+++ |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 55555666663 3466555542 445666777776 566777
Q ss_pred ccchhhhcC
Q 017723 321 RGSVRTNLD 329 (367)
Q Consensus 321 ~~Ti~eNi~ 329 (367)
...+.++|.
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 777777764
No 167
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.15 E-value=1.2e-06 Score=81.18 Aligned_cols=41 Identities=22% Similarity=0.479 Sum_probs=37.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHc------------CCCCCCceEEECCe
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFR------------LVEPENGRILIDGL 296 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g------------~~~p~~G~I~~~g~ 296 (367)
.+++|.+++|||++|+|||||++.|.| ..+|+.|.+.++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 557899999999999999999999999 67899999999873
No 168
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.14 E-value=6.2e-07 Score=75.42 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=40.7
Q ss_pred EEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc----C----CCCCCceEEECCeec
Q 017723 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----L----VEPENGRILIDGLDI 298 (367)
Q Consensus 239 sf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g----~----~~p~~G~I~~~g~~i 298 (367)
+|+|++-. .+++++|++.+++ +++++|++|+|||||++.+.+ . ..++.+.+.++|..+
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 56776543 4899999998877 689999999999999999986 2 334567788887544
No 169
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.13 E-value=4.4e-07 Score=88.38 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=50.1
Q ss_pred EEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEee
Q 017723 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (367)
Q Consensus 235 ~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~ 314 (367)
++++..+|. ...+++++++++ +|+.+.|+||+|+|||||++.|.+.+.+..|.|.++|..-..--....++.+++++
T Consensus 86 ~~~vk~~i~--~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~ 162 (543)
T 3m6a_A 86 LEKVKERIL--EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP 162 (543)
T ss_dssp CHHHHHHHH--HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred HHHHHHHHH--HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence 455555552 123678888888 89999999999999999999999999999999998885432222333455677777
Q ss_pred cCcc
Q 017723 315 QEPT 318 (367)
Q Consensus 315 Q~~~ 318 (367)
|...
T Consensus 163 ~~~~ 166 (543)
T 3m6a_A 163 GRII 166 (543)
T ss_dssp -CHH
T ss_pred hHHH
Confidence 6544
No 170
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.13 E-value=6.1e-07 Score=85.98 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=69.0
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceE
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 312 (367)
.+++++...|.. +..++++++++++| +.|+||+|+|||||++.+.+... .|.+.++|.++.+......++++..
T Consensus 41 ~~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 41 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 345555444532 23789999999999 99999999999999999999875 6899999988877666666777888
Q ss_pred eecCcc-ccc-cchhhhc
Q 017723 313 IPQEPT-LFR-GSVRTNL 328 (367)
Q Consensus 313 V~Q~~~-lf~-~Ti~eNi 328 (367)
++|+.. ..+ -.+.|+|
T Consensus 115 lfq~a~~~~p~il~IDEI 132 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEI 132 (499)
T ss_dssp HTTTSSSSSSCEEEEECG
T ss_pred HHHHHHhcCCCEEEEehH
Confidence 888875 232 3556676
No 171
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.13 E-value=5.1e-07 Score=76.43 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.4
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
...+|..++|+|+|||||||+++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999999998774
No 172
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.12 E-value=1.4e-06 Score=88.12 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred eEEEEeeEEEeCC-----CCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCceEEECCeecCCCChhh
Q 017723 232 RIELEDLKVRYRP-----NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKD 305 (367)
Q Consensus 232 ~I~~~nvsf~Y~~-----~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p-~~G~I~~~g~~i~~~~~~~ 305 (367)
.|.+++.. .|= +...+++|++|+ ++|+.++|+|||||||||+++++.|+..+ ..| ..+..
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----- 642 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----- 642 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----
Confidence 57777652 221 234589999999 99999999999999999999999997432 222 11111
Q ss_pred hhhhceEeecCccccc-cchhhhcCC
Q 017723 306 LRTKLSIIPQEPTLFR-GSVRTNLDP 330 (367)
Q Consensus 306 ~r~~i~~V~Q~~~lf~-~Ti~eNi~~ 330 (367)
-+..++++.| +|. -++.||+..
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~ 665 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLAS 665 (800)
T ss_dssp SEEEECCCCE---EEEEEC-------
T ss_pred hcccceeHHH---HHhhCCHHHHHHh
Confidence 1245677766 443 367788754
No 173
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.11 E-value=1e-06 Score=90.14 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=41.3
Q ss_pred ceEEEEeeEEEe-----CCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 231 GRIELEDLKVRY-----RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 231 ~~I~~~nvsf~Y-----~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
+.|.+++...-. +.+.+.+++|++|++++|+.++|+|||||||||+++.+.+
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 357777754321 1124569999999999999999999999999999999863
No 174
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.11 E-value=8.6e-07 Score=78.87 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=29.6
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I 291 (367)
.+++|+.++|+|++|||||||++.+++... .|++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~ 59 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD 59 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC
Confidence 478999999999999999999999998664 4555
No 175
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.09 E-value=1.9e-06 Score=81.80 Aligned_cols=60 Identities=28% Similarity=0.516 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC------------CCCCceEEECCeecCCCChhhhhhhceEeecCcccc
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV------------EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~------------~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
-+++|+|++|+|||||++.|+|.. +|.+|.+.++|.++.-++..-.++...+.+|....|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 479999999999999999999985 378899999998776666555566556655655444
No 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.09 E-value=1.6e-06 Score=72.93 Aligned_cols=37 Identities=32% Similarity=0.546 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-----CC------CCceEEECCeec
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV-----EP------ENGRILIDGLDI 298 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~-----~p------~~G~I~~~g~~i 298 (367)
+++|+|++|||||||++.+.|.. .| ..|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 68999999999999999999974 24 357899999765
No 177
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.06 E-value=1.6e-06 Score=74.79 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=32.3
Q ss_pred eeeeeeEec---CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEEC
Q 017723 250 LKGITCTFK---EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 294 (367)
Q Consensus 250 L~~isl~i~---~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~ 294 (367)
|.+.|+++. +|..++|.|++||||||+++.|...+.+ .+++...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 344444444 7999999999999999999999999988 7777643
No 178
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.05 E-value=5.8e-07 Score=76.50 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=39.7
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc--eEEECCeecC
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDIC 299 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G--~I~~~g~~i~ 299 (367)
+.+++|..++|+|++||||||+++.|.+.++|..| .+.+||.++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 55788999999999999999999999999988888 8899875543
No 179
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.05 E-value=1.6e-06 Score=77.64 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=36.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc-eEEECCeecCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICS 300 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G-~I~~~g~~i~~ 300 (367)
++|+.++++|++||||||++..|++.+.+.+| +|.+-+.|...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 46999999999999999999999999998888 77776655543
No 180
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.05 E-value=1.1e-06 Score=85.24 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=60.1
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC----------------------C-C---
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL----------------------V-E--- 285 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~----------------------~-~--- 285 (367)
.|+++|+. .++++++++.+| .++|+|+||||||||+..|..+ + +
T Consensus 42 ~L~i~nf~---------~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~ 111 (517)
T 4ad8_A 42 RLEIRNLA---------TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDE 111 (517)
T ss_dssp EEEEESBT---------TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC-----
T ss_pred eeeccccc---------ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCC
Confidence 47777641 577899999999 9999999999999999999554 4 2
Q ss_pred ------------CCCceEEECCeecCCCChhhhhhh-ceEeecCccccc
Q 017723 286 ------------PENGRILIDGLDICSMGLKDLRTK-LSIIPQEPTLFR 321 (367)
Q Consensus 286 ------------p~~G~I~~~g~~i~~~~~~~~r~~-i~~V~Q~~~lf~ 321 (367)
...+++++||.+++.-+..++... +.+++|+-.++.
T Consensus 112 ~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l 160 (517)
T 4ad8_A 112 SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL 160 (517)
T ss_dssp ---CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred CCeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence 336789999988765444544444 688899866544
No 181
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.02 E-value=2.1e-06 Score=81.26 Aligned_cols=50 Identities=24% Similarity=0.481 Sum_probs=38.7
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G 289 (367)
.|+++|+ .+|.. .. .+++++|+.++|+||||||||||+++|.++..|.++
T Consensus 6 ~l~~~~~-~~~~~-----~~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG-----VT--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS-----EE--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC-----ce--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 5888888 56632 11 255788999999999999999999999999988764
No 182
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.01 E-value=2.3e-06 Score=70.04 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998764 56664
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.00 E-value=9.5e-07 Score=80.97 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=45.3
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~ 299 (367)
++++++++.++|..++|+|++|+||||+++.|++.+.+..|++.+-+.+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 788999999999999999999999999999999999888888877665543
No 184
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.95 E-value=5.4e-06 Score=76.10 Aligned_cols=33 Identities=39% Similarity=0.597 Sum_probs=31.3
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
.++++++++++| .++|+|+|||||||++++|.+
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578999999999 999999999999999999997
No 185
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.91 E-value=4.2e-06 Score=76.62 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=51.8
Q ss_pred ceeeeee--EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE-EECCeecCCCChhhhhhhceEeecCccccc
Q 017723 249 VLKGITC--TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (367)
Q Consensus 249 ~L~~isl--~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I-~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~ 321 (367)
.|+.+-= -+++|+.+.|.||+|||||||+..+++...+..|.+ ++++. +.....+.+++++.+|+..+..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E---~s~~~~ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE---HALDPVYAKNLGVDLKSLLISQ 120 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS---CCCCHHHHHHHTCCGGGCEEEC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc---cccchHHHHHcCCchhhhhhhh
Confidence 4554422 488999999999999999999999999988888876 55553 2223346677888887766543
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.90 E-value=5.6e-06 Score=76.43 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=34.6
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc--CCCCCCceEEEC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILID 294 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g--~~~p~~G~I~~~ 294 (367)
+|+++++++| .+++||++|||||||++.|.| ++++.+|.+.-.
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 7899999999 999999999999999999999 778888876533
No 187
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.90 E-value=3.9e-06 Score=81.50 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=35.3
Q ss_pred eeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCce--EEECC
Q 017723 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR--ILIDG 295 (367)
Q Consensus 254 sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~--I~~~g 295 (367)
+..+++|+.++|+|++|||||||++.++|...|. |+ +++.+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ 317 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAY 317 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEES
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 4589999999999999999999999999999885 54 45544
No 188
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.90 E-value=8.4e-06 Score=67.87 Aligned_cols=49 Identities=27% Similarity=0.410 Sum_probs=29.9
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc----CC----CCCCceEEECCeec
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LV----EPENGRILIDGLDI 298 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g----~~----~p~~G~I~~~g~~i 298 (367)
++++++++.++. +++++|++|+|||||++.+.+ .+ .++.+++.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 788999987776 899999999999999999997 23 33456777777544
No 189
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.89 E-value=3e-06 Score=77.85 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=36.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~ 299 (367)
+++..++|+|++|||||||++.|.|.+.|.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357889999999999999999999999888899888776544
No 190
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.89 E-value=9.5e-06 Score=66.41 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=31.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCC------------CCceEEECCeec
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP------------ENGRILIDGLDI 298 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p------------~~G~I~~~g~~i 298 (367)
++|.+++|+|++|+|||||++.+.+...+ ..+.+.++|.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 46899999999999999999999986421 236777777543
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.86 E-value=4.9e-06 Score=77.97 Aligned_cols=63 Identities=24% Similarity=0.138 Sum_probs=50.8
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~ 301 (367)
+..++++..|.+.. ++++++ +|+.++++|++||||||++..|++.+.+..|+|.+.+.|....
T Consensus 77 ~v~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 77 TVYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp HHHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence 44455666664322 567777 8999999999999999999999999999999999988777553
No 192
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.85 E-value=1.1e-05 Score=74.55 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=29.4
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
.++++++++++| .++|+||||||||||+..|.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 467889999999 78899999999999999998
No 193
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.85 E-value=7.2e-06 Score=83.10 Aligned_cols=40 Identities=28% Similarity=0.433 Sum_probs=34.9
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHH
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI 277 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~ 277 (367)
..|++++.. . + =||||+++||.|+.|+|.|.||||||||+
T Consensus 14 ~~I~i~gar-----~-h-NLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 14 GFVQVRGAR-----Q-H-NLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TEEEEEEEC-----S-T-TCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CeEEEeecc-----c-c-CCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 369998762 2 2 49999999999999999999999999998
No 194
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.81 E-value=9.5e-06 Score=74.81 Aligned_cols=51 Identities=35% Similarity=0.522 Sum_probs=38.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-----------CCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVE-----------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~-----------p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
.++|+|++|+|||||++.|.|... |..|.|.++|.++. +.+..|++.|.|+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~ 242 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPP 242 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCH
Confidence 399999999999999999999875 67899999997653 2235666665443
No 195
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.80 E-value=1.1e-05 Score=66.97 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.7
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999875
No 196
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.80 E-value=2e-06 Score=74.69 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=42.8
Q ss_pred ceeee-eeEecCCcEEEEEcCCCCCHHHHHH-HHHcCCCCCCceEEECCeecCCCChhhh---hhhceEeecC
Q 017723 249 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLIS-ALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQE 316 (367)
Q Consensus 249 ~L~~i-sl~i~~G~~vaIvG~SGsGKSTl~~-ll~g~~~p~~G~I~~~g~~i~~~~~~~~---r~~i~~V~Q~ 316 (367)
.|+.+ .--+++|+.+.|+|++|||||||+. ++.+..++..+.+++++.. +.+.+ ...+++.+|+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~ 79 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKP 79 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHH
Confidence 56666 6679999999999999999999955 5455555555556655422 23322 3346666664
No 197
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.79 E-value=1.9e-06 Score=72.53 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc------CCCCCCceEEECCe--ecCCCCh--------hhhhhhceEeecCccccccchh
Q 017723 262 RVGVVGRTGSGKTTLISALFR------LVEPENGRILIDGL--DICSMGL--------KDLRTKLSIIPQEPTLFRGSVR 325 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g------~~~p~~G~I~~~g~--~i~~~~~--------~~~r~~i~~V~Q~~~lf~~Ti~ 325 (367)
.++|+|++||||||+++.|.. +.+|..|...++.. +-...+. +.++.....+.|+..+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 34444443322211 1000110 0022333556677788888877
Q ss_pred hhcC
Q 017723 326 TNLD 329 (367)
Q Consensus 326 eNi~ 329 (367)
+|+.
T Consensus 82 ~~~~ 85 (205)
T 2jaq_A 82 EDPI 85 (205)
T ss_dssp THHH
T ss_pred hhHH
Confidence 6643
No 198
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.79 E-value=1e-05 Score=82.44 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=33.6
Q ss_pred eEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHH
Q 017723 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI 277 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~ 277 (367)
.|++++.. .. =|||||++||+++.|+|.|.||||||||+
T Consensus 23 ~I~i~gar-----~h--NLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 23 KIIVKGAR-----AH--NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EEEEEEEC-----SS--SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred eEEEeccc-----cc--cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 57887652 22 49999999999999999999999999996
No 199
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.78 E-value=1e-05 Score=82.68 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=34.0
Q ss_pred ceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHH
Q 017723 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI 277 (367)
Q Consensus 231 ~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~ 277 (367)
..|++++.. . + =|||||++||+++.|+|.|.||||||||+
T Consensus 24 ~~I~i~gar-----~-h-NLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 24 DRLIVKGAR-----E-H-NLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CEEEEEEEC-----S-S-SCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred CcEEEeccc-----c-c-ccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 358888752 2 2 49999999999999999999999999996
No 200
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.75 E-value=5.3e-06 Score=74.31 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=43.3
Q ss_pred ee-eeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 251 KG-ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 251 ~~-isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
++ ++++.+ |+.++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 35 777776 99999999999999999999999999999999998877654
No 201
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.75 E-value=9.9e-06 Score=82.79 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=28.1
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHH
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLI 277 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~ 277 (367)
=||||+++||+++.|+|.|.||||||||+
T Consensus 13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 13 NLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 49999999999999999999999999997
No 202
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.74 E-value=1.9e-05 Score=75.54 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=45.2
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHHHHc--CCCCCCceEEECCeecCCCChhh
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKD 305 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g--~~~p~~G~I~~~g~~i~~~~~~~ 305 (367)
.+++++.++.++.|+|.|||||||+++.|.. ++.++.|++.+.+.|.+......
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~ 214 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV 214 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh
Confidence 4778889999999999999999999999886 67777799998888877644333
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=1.8e-06 Score=79.16 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=51.9
Q ss_pred cceeeeeeEecCCcE--EEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC-CChhhhhhhceEeec
Q 017723 248 LVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-MGLKDLRTKLSIIPQ 315 (367)
Q Consensus 248 ~~L~~isl~i~~G~~--vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~-~~~~~~r~~i~~V~Q 315 (367)
.+++.++..++.|+. +.+.||+|+||||+++.+++.+.+..+.+.+.+.+..+ ...+.+|+.+..++|
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 388899999999988 99999999999999999999987777765555554443 235566665554444
No 204
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.67 E-value=1.3e-05 Score=66.45 Aligned_cols=42 Identities=36% Similarity=0.492 Sum_probs=34.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE-EECCee
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLD 297 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I-~~~g~~ 297 (367)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 345799999999999999999999999988777776 455533
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.67 E-value=7e-06 Score=83.65 Aligned_cols=62 Identities=23% Similarity=0.201 Sum_probs=51.0
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCcc
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~ 318 (367)
+.+++|+.+.|+||+|||||||+++|++.+.+. -+.+++.++.........+++..++|++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHHH
Confidence 478999999999999999999999999998764 47888877766666666677777777753
No 206
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.65 E-value=3e-05 Score=61.94 Aligned_cols=29 Identities=38% Similarity=0.709 Sum_probs=23.5
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
+..+++++| ..+|+||+||||||++..|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555544 89999999999999999987
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.63 E-value=3e-05 Score=71.75 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=34.7
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcC-----------CCCCCceEEECCe
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRL-----------VEPENGRILIDGL 296 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~-----------~~p~~G~I~~~g~ 296 (367)
.++.|.+++|||++|+|||||++.|.|. .+|+.|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 7888999988763
No 208
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.62 E-value=1.7e-05 Score=66.69 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeec
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i 298 (367)
...++|+|++||||||+++.|.+.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999998876 4556665443
No 209
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.61 E-value=1.7e-05 Score=69.34 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=35.3
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~ 300 (367)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+|+-.++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456788999999999999999999998875 3568888866543
No 210
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.58 E-value=6.9e-05 Score=60.61 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-+++++|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=1.4e-05 Score=69.90 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=34.3
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~ 301 (367)
.+++++...++| +.|+||+|+||||+++.+.+.+... -+.+++.++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~ 84 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEM 84 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHH
Confidence 445555555555 9999999999999999999987643 577888766543
No 212
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.57 E-value=3.3e-05 Score=65.14 Aligned_cols=29 Identities=45% Similarity=0.661 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
.++|+|++||||||+.+.|.++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6899999999999999999983 5555654
No 213
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.55 E-value=2.9e-05 Score=63.66 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC---CceEEECCee
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLD 297 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~---~G~I~~~g~~ 297 (367)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4679999999999999999999876543 3777877654
No 214
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.55 E-value=3.6e-05 Score=63.79 Aligned_cols=45 Identities=27% Similarity=0.590 Sum_probs=33.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC-------------CCCCceEEECCeecCCCChhhhhhh
Q 017723 263 VGVVGRTGSGKTTLISALFRLV-------------EPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 263 vaIvG~SGsGKSTl~~ll~g~~-------------~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
+.|+||||||||||++-|+.-+ +|-.|++ ||++..=++.+...+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHH
Confidence 7899999999999999987543 4455664 7877776676665444
No 215
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.50 E-value=8.2e-06 Score=75.27 Aligned_cols=54 Identities=33% Similarity=0.400 Sum_probs=35.6
Q ss_pred cceEEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE
Q 017723 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (367)
Q Consensus 230 ~~~I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I 291 (367)
.+.+.++|++..|.. +.++++++++| +|+|++|+|||||++.|.+.-.+..|.+
T Consensus 15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 356899999888853 23788888876 9999999999999999988755544443
No 216
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=5.7e-05 Score=62.31 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC-----------CCCCCceEEECCee
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL-----------VEPENGRILIDGLD 297 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~-----------~~p~~G~I~~~g~~ 297 (367)
-+++++|++|+|||||++.+.+. .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999984 33455677776653
No 217
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.50 E-value=5.5e-05 Score=70.55 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEEC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 294 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~ 294 (367)
.+..++|+|+|||||||+++.++..+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 688999999999999999999998887888888774
No 218
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.46 E-value=5.9e-05 Score=62.22 Aligned_cols=23 Identities=48% Similarity=0.762 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++|+|++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.41 E-value=7.5e-05 Score=68.38 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=43.7
Q ss_pred ceeeee--eEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEE-ECCeecCCCChhhhhhhceEeecCcccc
Q 017723 249 VLKGIT--CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-IDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (367)
Q Consensus 249 ~L~~is--l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~-~~g~~i~~~~~~~~r~~i~~V~Q~~~lf 320 (367)
.|+.+- =-+++|+.+.|.|++|||||||+..++.......|.+. ++.- .-....+.+++++.+|+..++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E---~~~~~~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE---HALDPEYAKKLGVDTDSLLVS 119 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS---CCCCHHHHHHTTCCGGGCEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC---CCcCHHHHHHcCCCHHHeEEe
Confidence 455432 26889999999999999999998877755544455544 4432 211223445566665555443
No 220
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.41 E-value=8.6e-05 Score=62.36 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
No 221
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.38 E-value=8.7e-05 Score=60.80 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
|..+.|+|+|||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997654
No 222
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.38 E-value=9.3e-05 Score=61.96 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 296 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~ 296 (367)
...++|+|++||||||+.++|... |-..+|.-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 457999999999999999999986 66666643
No 223
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.36 E-value=0.00019 Score=59.15 Aligned_cols=37 Identities=38% Similarity=0.726 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH-cC----CCCCCc----eEEECCeec
Q 017723 262 RVGVVGRTGSGKTTLISALF-RL----VEPENG----RILIDGLDI 298 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~-g~----~~p~~G----~I~~~g~~i 298 (367)
+++|+|++|+|||||++-+. +. +.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 69999999999999997555 44 678877 777887543
No 224
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.33 E-value=4.2e-05 Score=69.51 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=33.1
Q ss_pred ceeeeeeEecCCcE--EEEEcCCCCCHHHHHHHHHcCC
Q 017723 249 VLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 249 ~L~~isl~i~~G~~--vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 78889999999999 9999999999999999998754
No 225
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.32 E-value=0.00014 Score=66.89 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=40.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecCccccccchhhhcCCCCCCCHHHHHH
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 341 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~e~i~~ 341 (367)
+++|||++|+|||||++.|.+.. + ++.+++.. |+..|+... +++++++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~-~v~~~~l~~ 52 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV-PLEDERLYA 52 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE-ECCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE-ecChHHHHH
Confidence 58999999999999999999874 2 12222222 555555432 356778888
Q ss_pred HHHHcCccH
Q 017723 342 AMEKCQLKA 350 (367)
Q Consensus 342 al~~a~l~~ 350 (367)
+++.++..+
T Consensus 53 ~~~~~~~~~ 61 (368)
T 2dby_A 53 LQRTFAKGE 61 (368)
T ss_dssp HHHHHCBTT
T ss_pred HHHHhcccc
Confidence 888877655
No 226
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.31 E-value=0.0001 Score=60.81 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.+|..++|+|++||||||+.+.|...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.25 E-value=0.00014 Score=58.99 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
..++|+|++||||||+++.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 228
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.25 E-value=3.5e-05 Score=65.25 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCce
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENGR 290 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G~ 290 (367)
.++|+|++||||||+++.|.+.+++....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~ 30 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRS 30 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 68999999999999999999888654333
No 229
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.23 E-value=0.00019 Score=60.37 Aligned_cols=29 Identities=34% Similarity=0.621 Sum_probs=23.2
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
+.++++.+ ...+|+|++||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455554 589999999999999999875
No 230
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.22 E-value=0.00011 Score=65.89 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
++.+++|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4458999999999999999999986
No 231
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.22 E-value=0.00015 Score=65.72 Aligned_cols=40 Identities=33% Similarity=0.356 Sum_probs=31.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCC-CC------CCceEEECC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV-EP------ENGRILIDG 295 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~-~p------~~G~I~~~g 295 (367)
-+++|+.+.|.|++|||||||+..++... .| ..+.++++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 68999999999999999999998887643 34 345566665
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.21 E-value=0.00019 Score=59.12 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.+..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 233
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.20 E-value=0.00021 Score=59.78 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 234
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.20 E-value=0.00029 Score=64.47 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc-----------CCCCCCceEEECC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFR-----------LVEPENGRILIDG 295 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g-----------~~~p~~G~I~~~g 295 (367)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46899999999999999999998 4478888888766
No 235
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00021 Score=63.53 Aligned_cols=35 Identities=40% Similarity=0.520 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
+|..+.|+|+|||||||+++.|..-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 36677776
No 236
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.19 E-value=0.00021 Score=59.10 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
|..++|.|++||||||+++.|...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 237
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.17 E-value=0.00021 Score=59.25 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.17 E-value=0.00016 Score=59.35 Aligned_cols=27 Identities=30% Similarity=0.214 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++..+.|+|++||||||+++.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998443
No 239
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.16 E-value=0.00021 Score=58.74 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC----CCCCCc----eEEECCee
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL----VEPENG----RILIDGLD 297 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~----~~p~~G----~I~~~g~~ 297 (367)
.-+++++|++|+|||||++.+.+- +.|+.| .+.+++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 457999999999999999999976 466777 56666543
No 240
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.15 E-value=0.00023 Score=61.32 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.2
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
-++|..++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999986
No 241
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.14 E-value=0.00028 Score=60.86 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCc
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEPENG 289 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p~~G 289 (367)
+++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999987665554
No 242
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.13 E-value=0.00028 Score=63.13 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=28.8
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
.+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 566666777 789999999999999999999886
No 243
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.11 E-value=0.00026 Score=60.05 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
++..++|+|++||||||+++.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 244
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.09 E-value=0.00033 Score=63.90 Aligned_cols=34 Identities=35% Similarity=0.562 Sum_probs=25.1
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHHH-HcCCCC
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISAL-FRLVEP 286 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~ll-~g~~~p 286 (367)
+..+++.+ ...+|+||+||||||++..| .+++.+
T Consensus 16 ~~~i~f~~-~~~~i~G~NGsGKS~lleAi~~~l~~~ 50 (339)
T 3qkt_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLYWP 50 (339)
T ss_dssp EEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CeEEcCCC-CeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44455554 48899999999999999976 345443
No 245
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.06 E-value=0.00034 Score=59.06 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.8
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.++|..++|+|++||||||+++.|...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999854
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.05 E-value=0.0003 Score=57.07 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 017723 261 TRVGVVGRTGSGKTTLISAL 280 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll 280 (367)
..++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 247
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.05 E-value=0.00035 Score=58.84 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
++|..++|.|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.04 E-value=0.0002 Score=65.44 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=32.3
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcC--CCC-----CCceEEECCe
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRL--VEP-----ENGRILIDGL 296 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~--~~p-----~~G~I~~~g~ 296 (367)
-+++|+.+.|.|++|||||||+..++.. .++ ..+.++++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 5899999999999999999999988874 322 3456677653
No 249
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.04 E-value=0.00035 Score=58.02 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 250
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.00036 Score=58.72 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
+|..++|.|++||||||+++.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999986654
No 251
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.01 E-value=0.00019 Score=67.27 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~ 299 (367)
++..++++|++||||||++..|++.+.+..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999999999999999998776653
No 252
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.01 E-value=0.00031 Score=57.41 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998754
No 253
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.98 E-value=0.00017 Score=68.58 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=40.1
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc-eEEECC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDG 295 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G-~I~~~g 295 (367)
.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+-+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 68888888999999999999999999999999988776555 566644
No 254
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00029 Score=57.83 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=18.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++..+.|+|.+||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 457889999999999999999998544
No 255
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.93 E-value=0.00032 Score=56.91 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCC---ceEEECCe
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGL 296 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~~---G~I~~~g~ 296 (367)
..++|+|+|||||||++..|.+.+.+.. |.|..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999999998765432 55554443
No 256
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.93 E-value=0.00039 Score=60.58 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+.++|+|++||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998654
No 257
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.91 E-value=0.00021 Score=59.50 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.9
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
..+++..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998654
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.87 E-value=0.00054 Score=55.93 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc
Q 017723 261 TRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g 282 (367)
..+.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
No 259
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.85 E-value=0.00052 Score=61.44 Aligned_cols=41 Identities=27% Similarity=0.273 Sum_probs=32.9
Q ss_pred eeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCe
Q 017723 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 296 (367)
Q Consensus 254 sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~ 296 (367)
++.++++..+.|.||+|+||||+++.+.+.+. .+-+.+++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~ 83 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP 83 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH
Confidence 34578899999999999999999999998764 355666543
No 260
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.83 E-value=0.00051 Score=57.18 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999753
No 261
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00061 Score=56.37 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999997543
No 262
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.0011 Score=53.14 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 263
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.82 E-value=0.00062 Score=56.23 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
.++|.|++||||||+++.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 264
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.82 E-value=0.0017 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
++.-+++++|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3566899999999999999999986
No 265
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.81 E-value=0.00074 Score=57.34 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++|..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998654
No 266
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.77 E-value=0.00062 Score=58.14 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++..+.|+|++||||||+++.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998544
No 267
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.75 E-value=0.00088 Score=55.97 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+..++|+|++||||||+.+.|...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998644
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.75 E-value=0.00075 Score=57.04 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++|+|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
No 269
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.75 E-value=0.0007 Score=56.62 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+...++|.|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999998544
No 270
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.74 E-value=0.00043 Score=61.60 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++-.++|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 271
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.73 E-value=0.00079 Score=58.42 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
=++++||++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999754
No 272
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.73 E-value=0.00073 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998643
No 273
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.73 E-value=0.00077 Score=57.33 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.+..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.72 E-value=0.00068 Score=57.33 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++|+|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997554
No 275
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.72 E-value=0.00084 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
...++|+|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999875
No 276
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.71 E-value=0.00079 Score=56.38 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 277
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.71 E-value=0.00081 Score=54.55 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 278
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.71 E-value=0.00087 Score=55.61 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 279
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.70 E-value=0.00093 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.330 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
-+.++|.|..||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999764
No 280
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.0016 Score=54.40 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998774
No 281
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.70 E-value=0.00092 Score=53.96 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 282
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.69 E-value=0.0009 Score=55.23 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997643
No 283
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.69 E-value=0.00089 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 284
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.69 E-value=0.0011 Score=59.80 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998764
No 285
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.68 E-value=0.0012 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999865
No 286
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.67 E-value=0.00083 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+++++|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 689999999999999999987543
No 287
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.67 E-value=0.0014 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998654
No 288
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.66 E-value=0.001 Score=57.55 Aligned_cols=27 Identities=33% Similarity=0.277 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++-.++|.|++||||||+++.|...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997544
No 289
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.66 E-value=0.0011 Score=57.93 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999874
No 290
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.62 E-value=0.0011 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 69999999999999999998754
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.62 E-value=0.00099 Score=58.61 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999998753
No 292
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.61 E-value=0.0012 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997543
No 293
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.61 E-value=0.0011 Score=57.75 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-.++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998744
No 294
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.61 E-value=0.0011 Score=54.69 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++|.|.+||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 295
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.60 E-value=0.00091 Score=58.95 Aligned_cols=22 Identities=50% Similarity=0.745 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
++++||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999998754
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0011 Score=54.74 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.=+++++|++|+|||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4489999999999999999999764
No 297
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.60 E-value=0.0011 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998843
No 298
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.59 E-value=0.0011 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 299
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.59 E-value=0.0016 Score=53.66 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 300
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.58 E-value=0.0012 Score=58.48 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
...++|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 301
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.57 E-value=0.0012 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
+++++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987654
No 302
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.57 E-value=0.0012 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 303
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.56 E-value=0.0019 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 304
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.56 E-value=0.0012 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 305
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.56 E-value=0.0012 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 306
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.56 E-value=0.0012 Score=52.71 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 307
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.55 E-value=0.0017 Score=53.84 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=27.6
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.+...-+.+ .|..+.|+|+||||||||+.-|..-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 455555554 58899999999999999999998643
No 308
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.55 E-value=0.0013 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 309
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.54 E-value=0.0028 Score=51.79 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcC----CCCCCc
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRL----VEPENG 289 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~----~~p~~G 289 (367)
++.=+++++|++|+|||||++.+.+- +.|+-|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 51 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG 51 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc
Confidence 34557999999999999999999863 445444
No 310
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.54 E-value=0.0013 Score=57.44 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++..+.|+|.+||||||+++.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999865
No 311
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.53 E-value=0.0017 Score=53.73 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
=+++++|++|+|||||++.+++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999975
No 312
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.53 E-value=0.0013 Score=52.69 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998753
No 313
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.52 E-value=0.0013 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.--+++++|++|+|||||++.+.+-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 314
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.52 E-value=0.00066 Score=64.56 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=30.6
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
.++++++.+++| +.|+||+|+|||||++.+.+...
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 677888888888 89999999999999999998653
No 315
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.51 E-value=0.0026 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 316
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.51 E-value=0.0014 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 317
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.50 E-value=0.0014 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988764
No 318
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.50 E-value=0.0014 Score=54.00 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-+++++|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 479999999999999999998764
No 319
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.49 E-value=0.0014 Score=57.68 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-+++++|++|+|||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999853
No 320
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.49 E-value=0.0019 Score=59.63 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=26.0
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
+++..+++.+ ...+|+|++||||||++..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4566677666 589999999999999999886
No 321
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.49 E-value=0.0011 Score=59.38 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceE-EECC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDG 295 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I-~~~g 295 (367)
...+.|+||+|+||||+++.+.+.+.+..|.+ .+|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 45799999999999999999999987777754 4443
No 322
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.48 E-value=0.0014 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 323
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=57.00 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
+..|+.+.++|++||||||++.+.+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4569999999999999999877665
No 324
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.47 E-value=0.0026 Score=51.68 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 017723 262 RVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~ 281 (367)
+++++|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 325
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.46 E-value=0.0015 Score=52.23 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 326
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.45 E-value=0.0016 Score=55.18 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+|..+.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997654
No 327
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.44 E-value=0.0016 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 68999999999999999998753
No 328
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.43 E-value=0.0016 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 329
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.43 E-value=0.0016 Score=58.21 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999975
No 330
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.42 E-value=0.0017 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999974
No 331
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.42 E-value=0.00023 Score=72.47 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=44.5
Q ss_pred eeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhhceEeecC
Q 017723 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (367)
Q Consensus 253 isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~V~Q~ 316 (367)
.++.+++++.+.++||+|+|||||++.+++.+.. +-+.+++.++...-.....+++..++|.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEechHhhhhhcCccHHHHHHHHHH
Confidence 4677889999999999999999999999998853 5667777665443222333344445544
No 332
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.42 E-value=0.0025 Score=50.23 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=29.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
+.+..+.|.|++|+|||++++.+........+...++.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~ 59 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC
Confidence 45677999999999999999999987655444433443
No 333
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.41 E-value=0.002 Score=57.47 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+..++|+||||||||||+.-|+.-++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987653
No 334
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.40 E-value=0.0017 Score=53.31 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 335
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.40 E-value=0.0019 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 336
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.39 E-value=0.0013 Score=54.18 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998654
No 337
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.38 E-value=0.0018 Score=52.46 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0018 Score=52.52 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999999853
No 339
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.37 E-value=0.0018 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
+.=+++++|++|+|||||++.+.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999975
No 340
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.37 E-value=0.0029 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999865
No 341
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.35 E-value=0.003 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc
Q 017723 261 TRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g 282 (367)
=+++++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999986
No 342
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.35 E-value=0.0016 Score=58.83 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
..++|+|+||||||||.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997664
No 343
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.35 E-value=0.0019 Score=56.30 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-+++|+|++|+|||||++.|++--
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999753
No 344
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.34 E-value=0.0019 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|.+|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999854
No 345
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.32 E-value=0.002 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 346
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.32 E-value=0.002 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 347
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0012 Score=55.43 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=24.0
Q ss_pred eeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 251 ~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.|+.+.-.+.-+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 344444334458999999999999999999864
No 348
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.32 E-value=0.0026 Score=52.53 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc------CCCCCCc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFR------LVEPENG 289 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g------~~~p~~G 289 (367)
.-+++++|.+|+|||||++.+.+ -|.|+.|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 34689999999999999999987 4455555
No 349
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.32 E-value=0.0023 Score=54.19 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999987765
No 350
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.31 E-value=0.002 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
No 351
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.30 E-value=0.0023 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
=+++++|.+|+|||||++.+.+-+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3799999999999999999998653
No 352
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.29 E-value=0.0021 Score=52.35 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999999985
No 353
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.29 E-value=0.0036 Score=51.64 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 354
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.29 E-value=0.0032 Score=50.86 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
--.|.-+.|.|+||+||||++..|..
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34588999999999999999987764
No 355
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.28 E-value=0.0018 Score=54.84 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 356
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.27 E-value=0.0021 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 357
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.27 E-value=0.0022 Score=53.07 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++|||.+|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 358
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.27 E-value=0.0022 Score=53.45 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCceE
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I 291 (367)
..+.|.|++|+|||||++.+..........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 7899999999999999999998775544444
No 359
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.27 E-value=0.0023 Score=52.64 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 360
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.26 E-value=0.0024 Score=59.84 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=30.0
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeec
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i 298 (367)
.-++...+.++|++||||||+++.|+.-+ |-..++.-++
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~~ 292 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDTL 292 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGGS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccchH
Confidence 34567899999999999999999998654 4555665444
No 361
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.26 E-value=0.0017 Score=55.42 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
++..+.|.|++|+||||+++.+...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999986543
No 362
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.24 E-value=0.0011 Score=62.39 Aligned_cols=44 Identities=32% Similarity=0.621 Sum_probs=33.8
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 293 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~ 293 (367)
+++.+ ..+-+|++++|+|+||+|||||++.|.+-.....|.|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 44444 566789999999999999999999998766544455544
No 363
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.24 E-value=0.0023 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.=+++++|++|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3479999999999999999998643
No 364
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0023 Score=52.83 Aligned_cols=28 Identities=29% Similarity=0.649 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC-----CCCCCc
Q 017723 262 RVGVVGRTGSGKTTLISALFRL-----VEPENG 289 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~-----~~p~~G 289 (367)
+++++|++|+|||||++.+.+- +.|+.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 57 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 5899999999999999999753 445555
No 365
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.24 E-value=0.0029 Score=54.23 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++..+.|+|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998655
No 366
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.23 E-value=0.0023 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 367
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.23 E-value=0.0024 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 368
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.23 E-value=0.0023 Score=56.32 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
=+++++|.+|||||||++.|.|-.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 369
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.23 E-value=0.0022 Score=54.74 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
.+|..++|-|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987664
No 370
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.22 E-value=0.0024 Score=52.43 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 371
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.22 E-value=0.0026 Score=54.17 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.+.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
No 372
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.21 E-value=0.0025 Score=57.21 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
--+++|+|++|+|||||++.|.|-
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 347999999999999999999985
No 373
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.21 E-value=0.0016 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999984
No 374
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.20 E-value=0.0035 Score=51.05 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999985
No 375
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.20 E-value=0.0027 Score=52.78 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 376
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0025 Score=52.48 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 377
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.19 E-value=0.0025 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 378
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.19 E-value=0.0024 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 379
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.18 E-value=0.0031 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+.=+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999853
No 380
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.18 E-value=0.0025 Score=54.24 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.-+++++|++|+|||||++.+.+-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999874
No 381
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.16 E-value=0.0027 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999874
No 382
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.16 E-value=0.003 Score=58.26 Aligned_cols=38 Identities=29% Similarity=0.542 Sum_probs=30.6
Q ss_pred cCCc--EEEEEcCCCCCHHHHHHHHHcCCCCCC--ceEEECC
Q 017723 258 KEGT--RVGVVGRTGSGKTTLISALFRLVEPEN--GRILIDG 295 (367)
Q Consensus 258 ~~G~--~vaIvG~SGsGKSTl~~ll~g~~~p~~--G~I~~~g 295 (367)
+++. .+.|.|++|+||||+++.+.+...+.. .-+.++.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 3456 899999999999999999999887753 4556664
No 383
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.16 E-value=0.0032 Score=55.08 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCce
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVEPENGR 290 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~ 290 (367)
.++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876554443
No 384
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.15 E-value=0.0029 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 385
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.15 E-value=0.0038 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 386
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.15 E-value=0.0031 Score=53.27 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
-+|..++|-|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999976654
No 387
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.15 E-value=0.0028 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 388
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.14 E-value=0.0032 Score=53.48 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
++|..+++.|.+||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999986554
No 389
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.14 E-value=0.0026 Score=57.15 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
..+.|+|++||||||+.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 390
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.13 E-value=0.0034 Score=53.88 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987664
No 391
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0031 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
+.=+++++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999984
No 392
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.11 E-value=0.0027 Score=51.78 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 393
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.11 E-value=0.0013 Score=55.58 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.-+++++|++|+|||||++.|.+--
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999764
No 394
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.11 E-value=0.003 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|++|+|||||++.|+|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 395
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.10 E-value=0.0031 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|.+|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 396
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0028 Score=54.57 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
No 397
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.08 E-value=0.0036 Score=51.08 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+.+..+.|+|++|+||||+++.+...+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346779999999999999999998765
No 398
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.07 E-value=0.0034 Score=56.22 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
|++-+++++|++|+|||||++.+.+-+
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 356789999999999999999988654
No 399
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.07 E-value=0.0032 Score=51.70 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 400
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.07 E-value=0.0031 Score=55.30 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++++|++|+|||||++.|++--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 401
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.07 E-value=0.0032 Score=56.02 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
...+.|+||||||||||+..|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987653
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.0031 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
-+++++|++|+|||||++-|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998865
No 403
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0032 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999854
No 404
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.06 E-value=0.0039 Score=52.66 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
+|..+.+-|++||||||.++.|...++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999876643
No 405
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.06 E-value=0.0033 Score=52.17 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.=+++++|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999999854
No 406
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.05 E-value=0.0022 Score=56.05 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+++..++|.|..||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998763
No 407
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.05 E-value=0.0033 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
=+++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999843
No 408
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.04 E-value=0.0034 Score=52.84 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
No 409
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.04 E-value=0.0032 Score=55.92 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++++||++|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
No 410
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.0035 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 411
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.03 E-value=0.0035 Score=51.53 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC-----CCCCCce
Q 017723 262 RVGVVGRTGSGKTTLISALFRL-----VEPENGR 290 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~-----~~p~~G~ 290 (367)
+++++|++|+|||||++-+.+- |.|+.|.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 6999999999999999888742 4555553
No 412
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.01 E-value=0.0033 Score=56.35 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++|+|++|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999875
No 413
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.01 E-value=0.0038 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 414
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.00 E-value=0.0035 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 415
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.00 E-value=0.0039 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.=+++++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 447999999999999999999853
No 416
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.99 E-value=0.0027 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
=+++++|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998853
No 417
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.99 E-value=0.0041 Score=55.25 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
.++..+.|.||+|+||||+++.+.+.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3578899999999999999999997653
No 418
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0039 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
-+++|+|.+|+|||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999864
No 419
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.98 E-value=0.0063 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34799999999999999988873
No 420
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.98 E-value=0.0052 Score=51.76 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC-----CCCCCce
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL-----VEPENGR 290 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~-----~~p~~G~ 290 (367)
=+++++|.+|+|||||++.+.+- |.|+.|.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~ 62 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE 62 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeee
Confidence 47999999999999999998754 3455444
No 421
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.98 E-value=0.0021 Score=59.04 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=30.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCC----CceEEECC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPE----NGRILIDG 295 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~----~G~I~~~g 295 (367)
+++..+.|.|++|+|||||++.+.+...+. ...+.+++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 457899999999999999999999877553 34556654
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.97 E-value=0.0026 Score=53.88 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.4
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-+.++...+.|+||.||||+|.++.|..-|
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344567789999999999999999999766
No 423
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.96 E-value=0.0037 Score=55.63 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc
Q 017723 261 TRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g 282 (367)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 424
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.95 E-value=0.0031 Score=59.89 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++|||++|+|||||++.|.|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999974
No 425
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.94 E-value=0.0053 Score=51.47 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.-+++++|++|+|||||++.+.+-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999853
No 426
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.91 E-value=0.0041 Score=57.02 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.-+++++|++|+|||||++.|.|..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999865
No 427
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.90 E-value=0.0026 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998754
No 428
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.87 E-value=0.0026 Score=57.38 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
++..+.|.||+|+|||||++.+.+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999987643
No 429
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0044 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999854
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.82 E-value=0.0045 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
-+++|+|.+|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999988864
No 431
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.80 E-value=0.0049 Score=56.94 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
...++|+||||||||||+..|+.-++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 34789999999999999999986553
No 432
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.77 E-value=0.0044 Score=50.45 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+.+..+.|+|++|+||||+++.+...+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4467789999999999999999987663
No 433
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.0063 Score=52.26 Aligned_cols=26 Identities=46% Similarity=0.701 Sum_probs=22.7
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHH
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALF 281 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~ 281 (367)
=+++|+.+.|.|++|+|||||+.-++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999999999976543
No 434
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.75 E-value=0.0051 Score=50.75 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
++.=+++++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999974
No 435
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.75 E-value=0.0058 Score=53.86 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
++++..+.|.||+|+||||+++.+++.+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46778899999999999999999997764
No 436
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.72 E-value=0.0053 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999753
No 437
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.72 E-value=0.0058 Score=55.08 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.7
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999988774
No 438
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.71 E-value=0.0041 Score=55.95 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=29.7
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
.|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5777776799999999999999999999887763
No 439
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.70 E-value=0.0023 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998843
No 440
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.70 E-value=0.0075 Score=53.29 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G 289 (367)
+-++++||.+|+|||||++.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 447899999999999999999987644333
No 441
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.69 E-value=0.0044 Score=56.67 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=33.5
Q ss_pred ceeeeeeE---ecCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CceEEECC
Q 017723 249 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDG 295 (367)
Q Consensus 249 ~L~~isl~---i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~-~G~I~~~g 295 (367)
.|+.+ +. +++|+.+.|.|++|||||||+.-++...... ...++++.
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56655 33 8899999999999999999998777544322 23455654
No 442
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.69 E-value=0.0038 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
+.=+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 455799999999999999999964
No 443
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.65 E-value=0.0053 Score=58.73 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=25.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
+.|-.+.++|.|||||||+.++|..-+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999976653
No 444
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0061 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 445
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.64 E-value=0.005 Score=55.78 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=41.0
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCeecCCCChhhhhhh
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 309 (367)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+.|.+-. . +.+.+.+..+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS--l-Ems~~ql~~R 92 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS--L-EMSAEQLALR 92 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE--S-SSCHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe--C-CCCHHHHHHH
Confidence 56666557899999999999999999999888765544455565522 2 4455555444
No 446
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.59 E-value=0.0021 Score=60.38 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g 295 (367)
...++++|++|+||||++.-|++.+.....+|.+-.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999998765545565533
No 447
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.54 E-value=0.0063 Score=55.99 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
++..+++||++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999986
No 448
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.53 E-value=0.008 Score=52.11 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++..-+.|.||+|+||||+++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568899999999999999998754
No 449
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.52 E-value=0.0023 Score=55.99 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=24.6
Q ss_pred eeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 250 L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
++++....++| +.|.||+|+||||+++.+.+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33444445555 889999999999999999864
No 450
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.52 E-value=0.003 Score=52.54 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=4.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988765
No 451
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.50 E-value=0.012 Score=55.54 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC------------CCCCceEEECCee
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV------------EPENGRILIDGLD 297 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~------------~p~~G~I~~~g~~ 297 (367)
+++|||++++|||||++-|.|-- +...|.+.++|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~ 50 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 50 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence 69999999999999999999753 2334667777753
No 452
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.49 E-value=0.0073 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc
Q 017723 261 TRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g 282 (367)
=+++++|++|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999984
No 453
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.48 E-value=0.0065 Score=55.90 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++..++++|++|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 67899999999999999999999863
No 454
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.47 E-value=0.0096 Score=54.10 Aligned_cols=45 Identities=31% Similarity=0.373 Sum_probs=34.1
Q ss_pred eeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC-----------CCCCceEEECC
Q 017723 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----------EPENGRILIDG 295 (367)
Q Consensus 251 ~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~-----------~p~~G~I~~~g 295 (367)
+.+.++++---.++|||.+++|||||++.|.+-- +|+-|.+.+++
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~ 204 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD 204 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC
Confidence 4455666655679999999999999999998642 45567777765
No 455
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.40 E-value=0.008 Score=58.60 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc---eEEECCe
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENG---RILIDGL 296 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G---~I~~~g~ 296 (367)
+|..+.|+|.|||||||+++.|...+.. .| .+.+|+-
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECcH
Confidence 4678999999999999999999876532 12 3556543
No 456
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.31 E-value=0.0055 Score=56.05 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=39.4
Q ss_pred eEEEEeeEEEeCCCCCccee-----------eeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 232 RIELEDLKVRYRPNTPLVLK-----------GITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 232 ~I~~~nvsf~Y~~~~~~~L~-----------~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
...|++++--||.. +.-++ |.=+.|-+|++.+|+|++|+|||||++.|.+..
T Consensus 137 r~~fe~l~Pi~P~~-R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 137 RVNFDNLTPDYPRE-RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCCGGGSCEECCCS-BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCchh-hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 35566666666533 22455 566788899999999999999999999888753
No 457
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.30 E-value=0.012 Score=49.79 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH-cC----CCCCCc
Q 017723 262 RVGVVGRTGSGKTTLISALF-RL----VEPENG 289 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~-g~----~~p~~G 289 (367)
+++++|.+|+|||||++-+. +- |.|+-|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig 47 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 47 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc
Confidence 69999999999999998776 32 456655
No 458
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.25 E-value=0.0084 Score=56.22 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEE
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 293 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~ 293 (367)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999999887765556655
No 459
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.24 E-value=0.0082 Score=56.58 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++|||++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999975
No 460
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.23 E-value=0.01 Score=58.18 Aligned_cols=40 Identities=33% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCceEEECCeec
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDI 298 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~~p-~~G~I~~~g~~i 298 (367)
+|..+.|+|.+||||||+++.|...+.. .-..+.+||..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4678999999999999999999876521 112455665433
No 461
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.19 E-value=0.013 Score=49.70 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=25.6
Q ss_pred eeeeeeEecCCc---EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 250 LKGITCTFKEGT---RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 250 L~~isl~i~~G~---~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++.+.-.+..|+ .+.|.|++|+||||+++.+.+.+
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 333333344444 79999999999999999998654
No 462
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.18 E-value=0.01 Score=55.12 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+++|||++++|||||++.|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999753
No 463
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.16 E-value=0.013 Score=53.55 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=31.9
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCceEEECCee
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 297 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G~I~~~g~~ 297 (367)
..+|..+.|.||+|+||||+++.+..........+.+++..
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 34577899999999999999999998876544555555543
No 464
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.15 E-value=0.012 Score=49.23 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
|+.|+|=|.-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999997664
No 465
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.14 E-value=0.0069 Score=57.42 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=32.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCC----CCCC--------ceEEECCeecCCCCh
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLV----EPEN--------GRILIDGLDICSMGL 303 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~----~p~~--------G~I~~~g~~i~~~~~ 303 (367)
+.|=+++|+|++|+|||||++.|++-- .+.. ..+.++|.++.=++.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT 279 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDT 279 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEEC
Confidence 346679999999999999999998741 1112 356778876554443
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.14 E-value=0.0082 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
.+.|.||.||||+|.++.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997663
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.10 E-value=0.0092 Score=49.72 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=26.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.+|+...+.|.||.|+||||++..|++.+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 47777789999999999999999999886
No 468
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.08 E-value=0.013 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++..+.|.||+|+||||+++.+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999998777654
No 469
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.08 E-value=0.0075 Score=55.13 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
++++||++|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 470
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.03 E-value=0.013 Score=49.23 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 017723 262 RVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g 282 (367)
-++|+|..||||||+.+.+..
T Consensus 11 ~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 471
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.03 E-value=0.011 Score=48.72 Aligned_cols=25 Identities=32% Similarity=0.242 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCHHHHH-HHHHcC
Q 017723 259 EGTRVGVVGRTGSGKTTLI-SALFRL 283 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~-~ll~g~ 283 (367)
+|+.+.++|+.||||||++ +++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4889999999999999997 555444
No 472
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.02 E-value=0.0048 Score=59.50 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
....+.++|.+||||||+.+.|.+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998654
No 473
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.99 E-value=0.011 Score=54.19 Aligned_cols=25 Identities=44% Similarity=0.647 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+..+.|.||+|+||||+++.+...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999765
No 474
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.98 E-value=0.0087 Score=50.46 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHH-HHcC----CCCCCc
Q 017723 262 RVGVVGRTGSGKTTLISA-LFRL----VEPENG 289 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~l-l~g~----~~p~~G 289 (367)
+++++|.+|+|||||++. +.+- +.|+.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~ 49 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 589999999999999998 5443 345555
No 475
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.99 E-value=0.0042 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q 017723 260 GTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34799999999999999987764
No 476
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.97 E-value=0.014 Score=55.07 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=31.1
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666665689999999999999999999988876554
No 477
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.97 E-value=0.023 Score=54.88 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=31.8
Q ss_pred eeeeEecCCcEEEEEcCCCCCHHHHHHHHHc----CCCCCCceEEE
Q 017723 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFR----LVEPENGRILI 293 (367)
Q Consensus 252 ~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g----~~~p~~G~I~~ 293 (367)
.+.+.+.++-++.|.|.+|||||++++.|.. -+.|.+-++.+
T Consensus 206 pv~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lil 251 (574)
T 2iut_A 206 PIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIM 251 (574)
T ss_dssp EEEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 3566677789999999999999999998553 45666655543
No 478
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.96 E-value=0.011 Score=54.15 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p 286 (367)
++-.++.|+|.+||||||+++-+--+|.|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~~ 59 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHGQ 59 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHSC
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34578999999999999999999555554
No 479
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.95 E-value=0.0091 Score=53.26 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=26.2
Q ss_pred ecCCcEEEEEcCCCCCHHHHHH-HHHcCCCC--CCceEEECC
Q 017723 257 FKEGTRVGVVGRTGSGKTTLIS-ALFRLVEP--ENGRILIDG 295 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~-ll~g~~~p--~~G~I~~~g 295 (367)
+++| .+-|.|++|||||||+. ++...... ..-.+++|+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 7889 99999999999999944 44444332 223455555
No 480
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.94 E-value=0.0083 Score=47.02 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+.+..+.|.|++|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4567799999999999999999987654
No 481
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.93 E-value=0.013 Score=52.37 Aligned_cols=29 Identities=34% Similarity=0.264 Sum_probs=25.8
Q ss_pred eEecCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 255 CTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 255 l~i~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
--+++|..+.|.|+.|+|||||+..++.-
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999998753
No 482
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.93 E-value=0.0072 Score=54.91 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=29.4
Q ss_pred ceeeeeeEecCC--cEEEEEcCCCCCHHHHHHHHHcCCC
Q 017723 249 VLKGITCTFKEG--TRVGVVGRTGSGKTTLISALFRLVE 285 (367)
Q Consensus 249 ~L~~isl~i~~G--~~vaIvG~SGsGKSTl~~ll~g~~~ 285 (367)
+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556665556666 5599999999999999999998753
No 483
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.90 E-value=0.0028 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
+++++|++|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988864
No 484
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.87 E-value=0.011 Score=54.20 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHHcC
Q 017723 256 TFKEGTRVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 256 ~i~~G~~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
-+++|+.+.|.|++|+|||||+.-++.-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999776643
No 485
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.86 E-value=0.025 Score=49.20 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=28.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCc-eEEEC
Q 017723 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILID 294 (367)
Q Consensus 258 ~~G~~vaIvG~SGsGKSTl~~ll~g~~~p~~G-~I~~~ 294 (367)
+.+..+.|.|++|+|||++++.+........+ -+.++
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 45678999999999999999999988765433 34444
No 486
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.86 E-value=0.02 Score=53.94 Aligned_cols=31 Identities=35% Similarity=0.661 Sum_probs=27.4
Q ss_pred eeEecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 254 sl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
=+.+-+|++++|+|++|+|||||+.-+.+-.
T Consensus 147 l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 147 LAPYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 3567899999999999999999998888765
No 487
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.83 E-value=0.013 Score=53.53 Aligned_cols=26 Identities=42% Similarity=0.583 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
+.-+++|+|+.|+||||+++-|.+.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998665
No 488
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.80 E-value=0.018 Score=51.92 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.4
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++..-+.|.||+|+|||++++.+.+..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456789999999999999999999765
No 489
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=94.79 E-value=0.01 Score=56.42 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC------------CCCCceEEECCeecCCCC
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV------------EPENGRILIDGLDICSMG 302 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~------------~p~~G~I~~~g~~i~~~~ 302 (367)
.|=+++|+|++|+|||||++.|.+-- ++..+.+.++|.++.=++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liD 287 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTD 287 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEE
Confidence 45579999999999999999999762 123355677776554433
No 490
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.78 E-value=0.015 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-+++|+|+.|+|||||++.|+|--
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999863
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.74 E-value=0.016 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 261 TRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 261 ~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
-+++++|++|+|||||++.++|--
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999764
No 492
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.72 E-value=0.016 Score=57.93 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=24.3
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.+++=+++|+|++|+|||||++.|+|--
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999999853
No 493
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.017 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 017723 262 RVGVVGRTGSGKTTLISALFRL 283 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~ 283 (367)
.+.|.|++|+||||+++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998764
No 494
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.68 E-value=0.015 Score=50.82 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=23.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 257 i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.++...+.|.||+|+||||+++.+....
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998753
No 495
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.68 E-value=0.019 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.-..+|.|+.||||||+.+.|..-|
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999997655
No 496
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.015 Score=53.42 Aligned_cols=37 Identities=38% Similarity=0.431 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-----------CCCCceEEECCeec
Q 017723 262 RVGVVGRTGSGKTTLISALFRLV-----------EPENGRILIDGLDI 298 (367)
Q Consensus 262 ~vaIvG~SGsGKSTl~~ll~g~~-----------~p~~G~I~~~g~~i 298 (367)
.|||||..-+|||||++.|.|-- +|..|.+.++|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 69999999999999999999864 45567888877544
No 497
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.65 E-value=0.027 Score=50.17 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=25.9
Q ss_pred ceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHc
Q 017723 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (367)
Q Consensus 249 ~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g 282 (367)
.++..-+.+ .|.-+.|.|+||+||||++..|..
T Consensus 137 ~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 137 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 555544444 588899999999999999988764
No 498
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.64 E-value=0.021 Score=47.64 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 260 G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
.-.++|.|+.||||||+.+.|+..+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998644
No 499
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.63 E-value=0.015 Score=56.56 Aligned_cols=49 Identities=27% Similarity=0.303 Sum_probs=32.1
Q ss_pred EEEEeeEEEeCCCCCcceeeeeeEecCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 017723 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (367)
Q Consensus 233 I~~~nvsf~Y~~~~~~~L~~isl~i~~G~~vaIvG~SGsGKSTl~~ll~g~~ 284 (367)
|+..+-.+...+....+|.+++ ++--.++|||++|+|||||++.|.|--
T Consensus 14 i~~~~~~l~~~~eal~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 14 IENTNGRLMANPEALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEETTEEEECHHHHHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEeCCCcEEECHHHHHHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3333445555333222455432 334678999999999999999999864
No 500
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=94.63 E-value=0.0056 Score=58.34 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC------------CCCCceEEECCeec
Q 017723 259 EGTRVGVVGRTGSGKTTLISALFRLV------------EPENGRILIDGLDI 298 (367)
Q Consensus 259 ~G~~vaIvG~SGsGKSTl~~ll~g~~------------~p~~G~I~~~g~~i 298 (367)
.|=+++|+|++|+|||||++.|.+-- ++..+.+.++|.++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~ 293 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILF 293 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEE
Confidence 35579999999999999999998752 34456777877643
Done!