Query 017724
Match_columns 367
No_of_seqs 97 out of 99
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05055 DUF677: Protein of un 100.0 5.7E-86 1.2E-90 650.2 25.2 278 84-361 28-326 (336)
2 PF05633 DUF793: Protein of un 98.7 1.9E-07 4.2E-12 94.5 14.0 264 89-360 70-378 (389)
3 PF12729 4HB_MCP_1: Four helix 71.1 25 0.00055 29.6 8.0 63 288-351 68-130 (181)
4 PF04156 IncA: IncA protein; 69.3 19 0.00042 32.6 7.2 20 220-239 5-24 (191)
5 PF10168 Nup88: Nuclear pore c 66.8 1.5E+02 0.0033 33.1 14.7 29 326-354 688-716 (717)
6 cd02433 Nodulin-21_like_2 Nodu 65.8 33 0.00071 33.0 8.3 109 217-346 15-135 (234)
7 PF05055 DUF677: Protein of un 62.6 1.8E+02 0.004 29.5 17.2 137 112-255 44-204 (336)
8 PF06103 DUF948: Bacterial pro 60.1 69 0.0015 25.6 8.1 57 294-353 28-84 (90)
9 PF05508 Ran-binding: RanGTP-b 60.0 78 0.0017 31.8 9.9 63 283-349 72-137 (302)
10 PF01616 Orbi_NS3: Orbivirus N 58.1 33 0.00072 32.4 6.6 31 201-231 72-102 (195)
11 PF12711 Kinesin-relat_1: Kine 56.4 35 0.00075 28.2 5.7 72 277-352 5-85 (86)
12 cd02434 Nodulin-21_like_3 Nodu 56.4 12 0.00025 35.7 3.4 55 294-348 61-120 (225)
13 PF14712 Snapin_Pallidin: Snap 49.7 45 0.00097 26.7 5.4 70 135-216 18-88 (92)
14 PF04136 Sec34: Sec34-like fam 47.4 1.2E+02 0.0026 27.2 8.3 44 115-158 30-76 (157)
15 PF03511 Fanconi_A: Fanconi an 45.7 24 0.00053 27.5 3.0 36 115-150 13-53 (64)
16 PRK09546 zntB zinc transporter 43.3 3.3E+02 0.0072 26.8 11.6 93 115-215 148-245 (324)
17 PF08700 Vps51: Vps51/Vps67; 42.0 42 0.00092 26.3 4.0 63 291-353 18-81 (87)
18 PF06120 Phage_HK97_TLTM: Tail 41.4 2.2E+02 0.0047 28.7 9.7 24 292-315 81-104 (301)
19 KOG4747 Two-component phosphor 40.7 2.8E+02 0.0062 25.2 10.4 97 111-213 40-136 (150)
20 TIGR02132 phaR_Bmeg polyhydrox 40.3 63 0.0014 30.2 5.3 33 284-316 64-96 (189)
21 cd02432 Nodulin-21_like_1 Nodu 40.2 82 0.0018 29.9 6.4 102 217-339 3-116 (218)
22 PF15290 Syntaphilin: Golgi-lo 39.4 48 0.001 33.1 4.7 58 307-364 90-158 (305)
23 PF04568 IATP: Mitochondrial A 39.4 41 0.00089 28.5 3.7 25 330-354 72-100 (100)
24 PF08317 Spc7: Spc7 kinetochor 38.9 4.1E+02 0.0088 26.5 13.3 62 292-356 209-270 (325)
25 KOG0217 Mismatch repair ATPase 37.1 7.7E+02 0.017 29.2 18.0 61 295-364 787-847 (1125)
26 cd02435 CCC1 CCC1. CCC1: This 35.4 49 0.0011 31.9 4.1 33 314-346 105-138 (241)
27 COG1937 Uncharacterized protei 35.3 1.1E+02 0.0024 25.4 5.5 66 271-336 13-86 (89)
28 PRK11091 aerobic respiration c 33.4 1.3E+02 0.0028 32.9 7.4 34 275-311 89-122 (779)
29 PHA02047 phage lambda Rz1-like 33.2 3.1E+02 0.0066 23.4 8.7 62 270-338 33-97 (101)
30 PF07889 DUF1664: Protein of u 32.6 1.3E+02 0.0029 26.4 6.0 74 191-311 49-122 (126)
31 PF06072 Herpes_US9: Alphaherp 31.8 66 0.0014 24.9 3.4 14 204-217 14-27 (60)
32 COG5346 Predicted membrane pro 31.7 1.4E+02 0.003 26.5 5.8 36 184-219 36-76 (136)
33 PF07730 HisKA_3: Histidine ki 29.4 1.7E+02 0.0038 21.4 5.4 54 298-360 3-56 (68)
34 PF14723 SSFA2_C: Sperm-specif 29.3 54 0.0012 30.5 3.0 24 332-355 107-130 (179)
35 PF02403 Seryl_tRNA_N: Seryl-t 29.0 2.5E+02 0.0053 23.0 6.8 41 322-362 66-106 (108)
36 PF03087 DUF241: Arabidopsis p 28.3 5.2E+02 0.011 24.6 18.4 41 116-156 31-71 (231)
37 PF06657 Cep57_MT_bd: Centroso 27.4 3.1E+02 0.0068 22.0 6.8 60 295-355 13-75 (79)
38 PRK15048 methyl-accepting chem 27.2 7.5E+02 0.016 26.0 13.8 18 272-289 219-236 (553)
39 PF00126 HTH_1: Bacterial regu 26.6 1.1E+02 0.0023 22.5 3.8 31 327-357 15-45 (60)
40 PF03904 DUF334: Domain of unk 26.6 3E+02 0.0065 26.7 7.6 30 193-222 121-150 (230)
41 PRK09986 DNA-binding transcrip 26.5 1.2E+02 0.0025 28.4 5.0 52 308-364 9-60 (294)
42 PF13887 MRF_C1: Myelin gene r 26.3 72 0.0016 22.3 2.5 22 330-351 14-35 (36)
43 PF09177 Syntaxin-6_N: Syntaxi 26.2 1.3E+02 0.0029 24.5 4.6 27 328-354 37-63 (97)
44 PF05597 Phasin: Poly(hydroxya 25.8 2.5E+02 0.0055 24.8 6.6 57 295-351 68-130 (132)
45 PF06160 EzrA: Septation ring 25.5 8.7E+02 0.019 26.2 12.2 87 258-344 435-528 (560)
46 PF14584 DUF4446: Protein of u 24.9 5.1E+02 0.011 23.3 10.1 27 334-360 57-83 (151)
47 PRK10803 tol-pal system protei 24.7 2.7E+02 0.0058 27.0 7.2 45 271-315 40-84 (263)
48 PF04156 IncA: IncA protein; 24.6 4E+02 0.0087 23.9 7.9 16 294-309 97-112 (191)
49 KOG0976 Rho/Rac1-interacting s 23.9 86 0.0019 35.8 3.9 72 289-360 295-367 (1265)
50 PF09537 DUF2383: Domain of un 23.3 2.3E+02 0.005 23.1 5.6 48 294-346 3-50 (111)
51 PRK15039 transcriptional repre 23.3 2.9E+02 0.0064 22.8 6.1 52 302-359 16-67 (90)
52 PLN03098 LPA1 LOW PSII ACCUMUL 22.7 1.4E+02 0.0031 31.6 5.1 39 277-323 264-306 (453)
53 PF06305 DUF1049: Protein of u 22.4 1.2E+02 0.0025 22.7 3.4 8 274-281 51-58 (68)
54 PHA00652 hypothetical protein 22.2 2.2E+02 0.0048 25.2 5.4 56 302-365 69-125 (128)
55 KOG3313 Molecular chaperone Pr 21.9 2.7E+02 0.0058 26.2 6.1 31 325-355 123-153 (187)
56 PF06013 WXG100: Proteins of 1 21.9 2.6E+02 0.0056 20.7 5.3 40 182-221 37-76 (86)
57 PF04012 PspA_IM30: PspA/IM30 21.4 3.3E+02 0.0072 25.1 6.9 58 267-324 26-83 (221)
58 PF12761 End3: Actin cytoskele 21.0 3.1E+02 0.0068 26.0 6.5 91 261-354 93-184 (195)
59 PF10112 Halogen_Hydrol: 5-bro 20.7 2.8E+02 0.006 25.4 6.1 16 297-312 73-88 (199)
60 PRK10082 cell density-dependen 20.4 1.5E+02 0.0032 28.2 4.4 53 307-364 12-64 (303)
61 COG4564 Signal transduction hi 20.1 4.9E+02 0.011 27.2 8.0 60 295-354 249-325 (459)
62 PRK11466 hybrid sensory histid 20.0 1.2E+03 0.026 25.8 13.1 46 269-314 356-408 (914)
No 1
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=100.00 E-value=5.7e-86 Score=650.15 Aligned_cols=278 Identities=35% Similarity=0.478 Sum_probs=263.7
Q ss_pred CCCch-hhhhhcccCCCHHHHHHHHHhc----CCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcCC
Q 017724 84 DKDPD-QLLLSQVLRPNRESVKEALRLV----KVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFP 158 (367)
Q Consensus 84 ~~~~s-~~~~~~LLep~Qe~V~~iL~~~----k~~eL~~Lv~~YFd~S~~As~lC~~Llk~I~~aR~~y~~I~~~L~~~~ 158 (367)
.++|| ++|+++|||||||||++||+++ ++|+|++||++|||+|++||+||++|++||+|||.+|++|+++|++|+
T Consensus 28 ~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~ 107 (336)
T PF05055_consen 28 LSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFE 107 (336)
T ss_pred CChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 35888 7999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred CCCCC----cccccchHHHHHHHhhhhcCCCCCCc-chhhHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhcccceee
Q 017724 159 LDHHS----VTQSQCDNAFEVFLQFDSLHNPFHSP-DSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCI 233 (367)
Q Consensus 159 ~e~~~----~~~~~~~~~l~~l~~F~~~~NPFs~~-~~~~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ir~~~~vS~i~~ 233 (367)
.|+.+ .++++|++|+++|++|++++|||+++ ++.+||+||++|++||++|+++|+|++||+|++|+|+++|++||
T Consensus 108 ~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~f 187 (336)
T PF05055_consen 108 KESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCF 187 (336)
T ss_pred hccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 98643 35899999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHH------HHHHhhccccc--cccchhhhHHHHHH---HHHHHHHHhcceeeccccccHHHHHH
Q 017724 234 IGTAVGVTIATVGVATHA------IFAIFAGPLCT--ACFPCALTKKELAN---AAQLDAARKGAYVLNKCLDTIDRLVA 302 (367)
Q Consensus 234 Vaa~~av~i~~vV~Aaha------laglva~P~~~--~~~~~~~kkke~al---~~QldaaakGTYIl~kDlDTIsrLV~ 302 (367)
|++|++|+|++||+|+|| +||++++|+++ +|++.+|+||++++ ++|+|+|+|||||+++|||||||||+
T Consensus 188 vaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsrLV~ 267 (336)
T PF05055_consen 188 VAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISRLVD 267 (336)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHHHHH
Confidence 999999999999999994 45666789887 49999999998775 46678999999999999999999999
Q ss_pred HHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccc
Q 017724 303 RLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSF 361 (367)
Q Consensus 303 RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~ 361 (367)
||+||||||+++||||++++++++.+++||+||+|++++|++||||||||||+||+||+
T Consensus 268 RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tIn 326 (336)
T PF05055_consen 268 RLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTIN 326 (336)
T ss_pred HHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997
No 2
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=98.72 E-value=1.9e-07 Score=94.52 Aligned_cols=264 Identities=15% Similarity=0.117 Sum_probs=161.0
Q ss_pred hhhhhcccCCCHHHHHHHHHhcC-----CCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcCCCCCCC
Q 017724 89 QLLLSQVLRPNRESVKEALRLVK-----VNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHS 163 (367)
Q Consensus 89 ~~~~~~LLep~Qe~V~~iL~~~k-----~~eL~~Lv~~YFd~S~~As~lC~~Llk~I~~aR~~y~~I~~~L~~~~~e~~~ 163 (367)
+..++.+|.=. +-++.+|...+ .|.+..+|.+|||.|.+++|+|+++...|.+.|..|+.+.-++..++... .
T Consensus 70 ~~~ld~~l~~~-~efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~-~ 147 (389)
T PF05633_consen 70 RKALDSFLCCH-EEFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSR-P 147 (389)
T ss_pred HHHHHHHHHHH-HHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 45556665544 44455544332 25588999999999999999999999999999999999999999887662 3
Q ss_pred cccccchHHHHHHHhhhh-------------------cC------CCCCC----cchhhHHHHHh---hhHHHHHHHHHH
Q 017724 164 VTQSQCDNAFEVFLQFDS-------------------LH------NPFHS----PDSRKFHEMHR---CFSDLKQKLDKN 211 (367)
Q Consensus 164 ~~~~~~~~~l~~l~~F~~-------------------~~------NPFs~----~~~~~Fq~v~~---~~~~Ll~kL~s~ 211 (367)
+++.++..+-..|..+.. ++ ++-+. .....|++.-= +.-+=-+.|+..
T Consensus 148 ~~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m 227 (389)
T PF05633_consen 148 LGEGQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAM 227 (389)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHH
Confidence 566677777666655542 01 11110 11224443211 111122333322
Q ss_pred HHHHH-hhhhhhhhhhcccceeehhhhHHHHHHHHHHHHHHH--HHHh----hccccccccchhhhHHHHHHHHHHHHH-
Q 017724 212 LQKSR-SRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAI--FAIF----AGPLCTACFPCALTKKELANAAQLDAA- 283 (367)
Q Consensus 212 k~K~~-rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV~Aahal--aglv----a~P~~~~~~~~~~kkke~al~~Qldaa- 283 (367)
-.++. -|.+-...-+.+...++...++.+.|+.+++||..- -|+. ++|=-.+|.+++..=.++ +.+..+--
T Consensus 228 ~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~r-I~eEikkk~ 306 (389)
T PF05633_consen 228 GENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQER-INEEIKKKE 306 (389)
T ss_pred HhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHHHH-HHHHHhhcc
Confidence 22222 111111111111122334445566666666666522 1332 134334677655432221 22222222
Q ss_pred HhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhcc
Q 017724 284 RKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPS 360 (367)
Q Consensus 284 akGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI 360 (367)
.||...+.+.|+.|.+.|.+|++=|+. ++|.++. ++...+++.++||.+..+.+.+=|+=||.+|.-=|+.|
T Consensus 307 ~kgs~gLLkEl~~ve~~vr~L~el~d~----~~~p~~~-e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~I 378 (389)
T PF05633_consen 307 RKGSCGLLKELQQVEASVRELHELIDS----FQFPLEE-EKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRI 378 (389)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHh----ccCCcch-hHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 567889999999999999999866664 3455544 33457889999999999999999999999999888865
No 3
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=71.11 E-value=25 Score=29.61 Aligned_cols=63 Identities=8% Similarity=0.032 Sum_probs=36.8
Q ss_pred eeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHH
Q 017724 288 YVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEE 351 (367)
Q Consensus 288 YIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeE 351 (367)
|++..|-+.+.....++......+....+---....+ ..-+..+.++++....|.+..+++-+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~ 130 (181)
T PF12729_consen 68 YLLATDPEERQEIEKEIDEARAEIDEALEEYEKLILS-PEEKQLLEEFKEAWKAYRKLRDQVIE 130 (181)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777776666666655555544433222111 12356778888888877777666543
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.33 E-value=19 Score=32.56 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=10.0
Q ss_pred hhhhhhhcccceeehhhhHH
Q 017724 220 CFLRYATAGSSVCIIGTAVG 239 (367)
Q Consensus 220 k~ir~~~~vS~i~~Vaa~~a 239 (367)
+.+.....+.|++++++.++
T Consensus 5 ~i~~i~~iilgilli~~gI~ 24 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIA 24 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555556655544333
No 5
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.78 E-value=1.5e+02 Score=33.14 Aligned_cols=29 Identities=17% Similarity=0.380 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhhhhhHHHhHHHHHHHHh
Q 017724 326 HSIQEVVKQLRKNQPNFASLLKDLEEHIC 354 (367)
Q Consensus 326 ~~vkevv~elkk~~~~f~~qleELeEhv~ 354 (367)
..+++++++.-++-....++++.+..|+.
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQIKNIKKIVN 716 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46788888888888999999999988874
No 6
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=65.79 E-value=33 Score=32.95 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=63.6
Q ss_pred hhhhhhhhhhcccceeehhhhHHHHHHHHH------HHHHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhcceee
Q 017724 217 SRVCFLRYATAGSSVCIIGTAVGVTIATVG------VATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVL 290 (367)
Q Consensus 217 rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV------~Aahalaglva~P~~~~~~~~~~kkke~al~~QldaaakGTYIl 290 (367)
++.+.+|..--+.+=.+|+.++.|+-++-+ +..-++++++|.-+ .++-|-|+-
T Consensus 15 ~~~~~lr~~VlG~nDGlvt~falvaG~aga~~~~~~Vl~~Gla~liAga~---------------------SMa~GeYls 73 (234)
T cd02433 15 RMSGNLRAAVFGANDGLVSNLALVMGVAGAGVSNQTILLTGLAGLLAGAL---------------------SMAAGEYVS 73 (234)
T ss_pred hhhhHHHHHHHhccchHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHH---------------------HHHhhhhhh
Confidence 356677777777766666665544333211 11113333333211 224555554
Q ss_pred cc-ccccHHHHHHHHhhHhHh-----hHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhH
Q 017724 291 NK-CLDTIDRLVARLCTAIEG-----DKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLL 346 (367)
Q Consensus 291 ~k-DlDTIsrLV~RL~deIE~-----~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~ql 346 (367)
.+ +-|.+...++|=+.++++ ...++++-.++|-.+...+.+++++.|+.+.|.+..
T Consensus 74 ~kse~d~~~~~~~re~~~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~ 135 (234)
T cd02433 74 VTSQRELLEASIPDERRELRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTL 135 (234)
T ss_pred hhhHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHH
Confidence 44 355666666666666654 445666666666667788899999999887776654
No 7
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=62.60 E-value=1.8e+02 Score=29.54 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=59.5
Q ss_pred CCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcCCCCCCCcccccchHHHHHHHhhhhcCCC------
Q 017724 112 VNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNP------ 185 (367)
Q Consensus 112 ~~eL~~Lv~~YFd~S~~As~lC~~Llk~I~~aR~~y~~I~~~L~~~~~e~~~~~~~~~~~~l~~l~~F~~~~NP------ 185 (367)
+++.-..+.+|=+.=-+-.++-..+...-+....-...=..+++.+. -....|..+...++.|..-..|
T Consensus 44 ~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~-----~aR~~~~~I~~al~~~~~e~~~~d~g~~ 118 (336)
T PF05055_consen 44 NQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIH-----RARDNYLPIRRALKQFEKESLDTDVGVS 118 (336)
T ss_pred ChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHhhhhcccccccccc
Confidence 44544444444333233444555555554444433222222222221 1234456666677777554332
Q ss_pred -------------C---CCcchhhHHHHHhhhHHHHHHHHHHHHHHHhhhh-hhhhhhcccceeeh-hhhHHHHHHHHHH
Q 017724 186 -------------F---HSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVC-FLRYATAGSSVCII-GTAVGVTIATVGV 247 (367)
Q Consensus 186 -------------F---s~~~~~~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk-~ir~~~~vS~i~~V-aa~~av~i~~vV~ 247 (367)
| ..||+... ...++..+-++-.+..+|++++.| +-|..|.+-..--+ +++.+++.++|++
T Consensus 119 ~~~~~~tl~eL~~F~~~~NPFs~~~--~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i 196 (336)
T PF05055_consen 119 QKKYDKTLEELKKFKAAGNPFSDEE--FFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAI 196 (336)
T ss_pred chhHHHHHHHHHhhhhcCCCCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2 12444430 245555566665555555553332 22233322222222 2333334445555
Q ss_pred HHHHHHHH
Q 017724 248 ATHAIFAI 255 (367)
Q Consensus 248 Aahalagl 255 (367)
++.++|+.
T Consensus 197 ~svv~aa~ 204 (336)
T PF05055_consen 197 ASVVAAAH 204 (336)
T ss_pred HHHHHHHH
Confidence 55555554
No 8
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=60.14 E-value=69 Score=25.61 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=27.1
Q ss_pred cccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHH
Q 017724 294 LDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHI 353 (367)
Q Consensus 294 lDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv 353 (367)
++.+.+.++++..+++.+..-++--+++-. .+.+-+++..++...+.+.++++++-+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n---~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTN---ELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444444444444444433333332211 133445555566666666666666654
No 9
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=60.05 E-value=78 Score=31.83 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=44.3
Q ss_pred HHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCC---CcccHHHHHHHHHhhhhhHHHhHHHH
Q 017724 283 ARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGK---EKHSIQEVVKQLRKNQPNFASLLKDL 349 (367)
Q Consensus 283 aakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~---~~~~vkevv~elkk~~~~f~~qleEL 349 (367)
+|+|. -.|+..-.|+..|+.+|.+.-..++-+.+.++ ....-++.++.+.+....+...+||.
T Consensus 72 aaRGN----t~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~a 137 (302)
T PF05508_consen 72 AARGN----TSLESALPLTKDLRREIDSFDERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDA 137 (302)
T ss_pred HhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 38885 45688999999999999998888877766211 12234566666666666677766664
No 10
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=58.06 E-value=33 Score=32.37 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhcccce
Q 017724 201 FSDLKQKLDKNLQKSRSRVCFLRYATAGSSV 231 (367)
Q Consensus 201 ~~~Ll~kL~s~k~K~~rKlk~ir~~~~vS~i 231 (367)
++..|.+|+...++++||-.+++....++++
T Consensus 72 ne~~L~~L~~el~~~kRk~~il~~~~li~a~ 102 (195)
T PF01616_consen 72 NEQILPKLKHELRKLKRKRRILHIVELIAAI 102 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999998888776665443
No 11
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=56.44 E-value=35 Score=28.20 Aligned_cols=72 Identities=11% Similarity=0.269 Sum_probs=42.5
Q ss_pred HHHHHHHHhcceeeccc-c---ccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHh-----hhhhHHHhHH
Q 017724 277 AAQLDAARKGAYVLNKC-L---DTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRK-----NQPNFASLLK 347 (367)
Q Consensus 277 ~~QldaaakGTYIl~kD-l---DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk-----~~~~f~~qle 347 (367)
..+|+...+|..-...- + .....=+.=|.+.|||-=.+.+||+|+.. +++-++.++. -.+....++.
T Consensus 5 I~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~r----L~ee~rrl~~f~~~gerE~l~~eis 80 (86)
T PF12711_consen 5 IKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIR----LREELRRLQSFYVEGEREMLLQEIS 80 (86)
T ss_pred HHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45677776666544321 1 22222233455555555599999999854 5555555543 4456777777
Q ss_pred HHHHH
Q 017724 348 DLEEH 352 (367)
Q Consensus 348 ELeEh 352 (367)
+|+++
T Consensus 81 ~L~~~ 85 (86)
T PF12711_consen 81 ELRDQ 85 (86)
T ss_pred HHHhh
Confidence 87765
No 12
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=56.40 E-value=12 Score=35.70 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=34.6
Q ss_pred cccHHHHHHHHhhHhHhh-----HHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHH
Q 017724 294 LDTIDRLVARLCTAIEGD-----KQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKD 348 (367)
Q Consensus 294 lDTIsrLV~RL~deIE~~-----~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleE 348 (367)
-|...+..+|-+.++++. ..+.++=..+|-.+...+.+++++-|+.+.|.+.+-.
T Consensus 61 ~d~~~~e~~re~~~i~~~pe~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~ 120 (225)
T cd02434 61 RDFLHSEKKREEWEIENYPEGEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMT 120 (225)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHH
Confidence 344445555656655443 2344444455555667888999999998888776554
No 13
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=49.70 E-value=45 Score=26.74 Aligned_cols=70 Identities=17% Similarity=0.357 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhHhHHHHhhcCCCCCCCcccccchHHHHHHHhhhhcCCCCCC-cchhhHHHHHhhhHHHHHHHHHHHH
Q 017724 135 QLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHS-PDSRKFHEMHRCFSDLKQKLDKNLQ 213 (367)
Q Consensus 135 ~Llk~I~~aR~~y~~I~~~L~~~~~e~~~~~~~~~~~~l~~l~~F~~~~NPFs~-~~~~~Fq~v~~~~~~Ll~kL~s~k~ 213 (367)
.+...|+..+.+|..+...|.... .-++++.+.....+||+- +-......+..+-..+-+++++-++
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~------------~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLN------------EKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888889988877776421 124444444445557755 3335677777777777777665555
Q ss_pred HHH
Q 017724 214 KSR 216 (367)
Q Consensus 214 K~~ 216 (367)
++.
T Consensus 86 R~~ 88 (92)
T PF14712_consen 86 RAD 88 (92)
T ss_pred HHH
Confidence 543
No 14
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=47.44 E-value=1.2e+02 Score=27.24 Aligned_cols=44 Identities=34% Similarity=0.403 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHhhHhHHHHhhcCC
Q 017724 115 LSDLFSTSFDHSEKTTNL---CLQLLKSLFCIRTLYAPVCELLDNFP 158 (367)
Q Consensus 115 L~~Lv~~YFd~S~~As~l---C~~Llk~I~~aR~~y~~I~~~L~~~~ 158 (367)
|..|...|-..|.+|..| |+.|+.-=.+-..-+..|..-|+.|+
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 76 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE 76 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 889999999999999987 99999998888888999999999885
No 15
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=45.67 E-value=24 Score=27.51 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=28.1
Q ss_pred hhHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHhhHhH
Q 017724 115 LSDLFSTSFD-----HSEKTTNLCLQLLKSLFCIRTLYAPV 150 (367)
Q Consensus 115 L~~Lv~~YFd-----~S~~As~lC~~Llk~I~~aR~~y~~I 150 (367)
|..|++.|.. .+.+|.|+|..+++|+++-+.+.+.+
T Consensus 13 LM~LlSs~l~p~~~~d~~kaldiCaeIL~cLE~R~isWl~L 53 (64)
T PF03511_consen 13 LMGLLSSYLAPKEGADSLKALDICAEILGCLEKRKISWLVL 53 (64)
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHHHHHHHhCCCcHHHh
Confidence 4466666664 46789999999999999988877654
No 16
>PRK09546 zntB zinc transporter; Reviewed
Probab=43.34 E-value=3.3e+02 Score=26.76 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=47.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHhhHhHHHHhhcCCCCCCCcccccchHHHHHHHhhhhcCCC-CCCc
Q 017724 115 LSDLFSTSFDHSEKTTNLCLQLLKSLFCI----RTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNP-FHSP 189 (367)
Q Consensus 115 L~~Lv~~YFd~S~~As~lC~~Llk~I~~a----R~~y~~I~~~L~~~~~e~~~~~~~~~~~~l~~l~~F~~~~NP-Fs~~ 189 (367)
+..++..||+.-.+.-+=...|+..|..- +..=..+++-+-.+. ....--.+.+..+....+| ++.+
T Consensus 148 ld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lr--------r~l~p~~~~l~~L~~~~~~~~~~~ 219 (324)
T PRK09546 148 CDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMR--------RYMAPQRDVFARLASERLPWMSDD 219 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCcccChH
Confidence 34566677777766666666666555321 000111222221110 0000112233444444445 3445
Q ss_pred chhhHHHHHhhhHHHHHHHHHHHHHH
Q 017724 190 DSRKFHEMHRCFSDLKQKLDKNLQKS 215 (367)
Q Consensus 190 ~~~~Fq~v~~~~~~Ll~kL~s~k~K~ 215 (367)
....|++++++...+++.+++.+..+
T Consensus 220 ~~~~l~Dv~d~~~~~~~~l~~~~~~~ 245 (324)
T PRK09546 220 DRRRMQDIADRLGRGLDDLDACIART 245 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999988888888877766533
No 17
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=41.99 E-value=42 Score=26.31 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=46.1
Q ss_pred ccccccHHHHHHHHhhHhHhhHHHHHHHh-hCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHH
Q 017724 291 NKCLDTIDRLVARLCTAIEGDKQLVRLGL-GGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHI 353 (367)
Q Consensus 291 ~kDlDTIsrLV~RL~deIE~~~~~v~fal-e~~~~~~~vkevv~elkk~~~~f~~qleELeEhv 353 (367)
...++.|..+..+|..+|+....-.+--| ++..+-..+-.-|..++.....+...|.+|...+
T Consensus 18 ~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 18 NSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888999999999988877777666 4444433444667778888888888888877665
No 18
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=41.41 E-value=2.2e+02 Score=28.67 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=14.1
Q ss_pred cccccHHHHHHHHhhHhHhhHHHH
Q 017724 292 KCLDTIDRLVARLCTAIEGDKQLV 315 (367)
Q Consensus 292 kDlDTIsrLV~RL~deIE~~~~~v 315 (367)
..++.-.+.|+-|+++|+.++.-+
T Consensus 81 ~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 81 ESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666444
No 19
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]
Probab=40.75 E-value=2.8e+02 Score=25.21 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcCCCCCCCcccccchHHHHHHHhhhhcCCCCCCcc
Q 017724 111 KVNSLSDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHNPFHSPD 190 (367)
Q Consensus 111 k~~eL~~Lv~~YFd~S~~As~lC~~Llk~I~~aR~~y~~I~~~L~~~~~e~~~~~~~~~~~~l~~l~~F~~~~NPFs~~~ 190 (367)
++..+..-+..||+.|+.|. +.+...+..-| -+..+..-.++|+..+.+.+..+..+....++.|-..+|-= .-
T Consensus 40 ~p~fv~ev~~~fF~~s~~~i---~~~r~ald~~~-d~k~~~~~~hqlkgssssIGa~kvk~~c~~~~~~~~~~n~e--gc 113 (150)
T KOG4747|consen 40 SPDFVEEVVGLFFEDSERLI---NNLRLALDCER-DFKKLGSHVHQLKGSSSSIGALKVKKVCVGFNEFCEAGNIE--GC 113 (150)
T ss_pred CccHHHHHHHHHHHHHHHHH---HHHHHHHhhHh-HHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHhhccch--hH
Confidence 44556788999999998765 33445555555 67777778888887766677777777888888888887752 11
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHH
Q 017724 191 SRKFHEMHRCFSDLKQKLDKNLQ 213 (367)
Q Consensus 191 ~~~Fq~v~~~~~~Ll~kL~s~k~ 213 (367)
...++.+-..+..|.++|+....
T Consensus 114 vr~l~~v~ie~~~lkkkL~~~f~ 136 (150)
T KOG4747|consen 114 VRCLQQVKIEYSLLKKKLETLFQ 136 (150)
T ss_pred hhchHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777776655
No 20
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=40.28 E-value=63 Score=30.24 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=26.0
Q ss_pred HhcceeeccccccHHHHHHHHhhHhHhhHHHHH
Q 017724 284 RKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVR 316 (367)
Q Consensus 284 akGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~ 316 (367)
+++..=.-.|+.++..||-.|+..|..+-...+
T Consensus 64 e~lNlPSr~DiarvA~lvinlE~kvD~lee~fd 96 (189)
T TIGR02132 64 EQVNVPTKEDIANVASLVINLEEKVDLIEEFFD 96 (189)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778999999999998888887755443
No 21
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=40.22 E-value=82 Score=29.89 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=49.5
Q ss_pred hhhhhhhhhhcccceeehhhhHHHHHHHHH------HHHHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhcceee
Q 017724 217 SRVCFLRYATAGSSVCIIGTAVGVTIATVG------VATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVL 290 (367)
Q Consensus 217 rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV------~Aahalaglva~P~~~~~~~~~~kkke~al~~QldaaakGTYIl 290 (367)
.|++.+|.+--+.+=.+|+.++.|+-++-. +..-++++++|.-+- ++-|-|+-
T Consensus 3 ~~~~~lr~~V~G~~DGlvs~~alvaG~aga~~~~~~Ill~Gla~l~Aga~S---------------------Ma~G~yls 61 (218)
T cd02432 3 ERLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALS---------------------MAAGEYVS 61 (218)
T ss_pred hhHhHHHHHHHhccchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Confidence 456777777777766666665544332211 111133444442211 12233332
Q ss_pred cc-ccccHHHHHHHHhhHhHhh-----HHHHHHHhhCCCCcccHHHHHHHHHhhh
Q 017724 291 NK-CLDTIDRLVARLCTAIEGD-----KQLVRLGLGGGKEKHSIQEVVKQLRKNQ 339 (367)
Q Consensus 291 ~k-DlDTIsrLV~RL~deIE~~-----~~~v~fale~~~~~~~vkevv~elkk~~ 339 (367)
.+ +-|.+...++|=+.+|++. ..+.+.=..+|-++...+.+++++-++.
T Consensus 62 ~~sq~d~~~~~~~~e~~~i~~~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~ 116 (218)
T cd02432 62 VSSQRDTEKADIAKERRELAEDPEAELEELADIYEERGLSPELARQVADELMAKD 116 (218)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC
Confidence 22 2333444444545555543 3344444445555556777888877764
No 22
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.36 E-value=48 Score=33.08 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=36.6
Q ss_pred HhHhhH----HHHHHHhhCCCCcccHHHHHHHHHhhhhhHH-------HhHHHHHHHHhhhhhccccCc
Q 017724 307 AIEGDK----QLVRLGLGGGKEKHSIQEVVKQLRKNQPNFA-------SLLKDLEEHICLCFRPSFGQG 364 (367)
Q Consensus 307 eIE~~~----~~v~fale~~~~~~~vkevv~elkk~~~~f~-------~qleELeEhv~lCf~tI~~~~ 364 (367)
||+.+| .|=+.|||.+.-++-.|.++||-||...-+. ..|-|=...|-.+|.+|+-|.
T Consensus 90 EI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 90 EIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhH
Confidence 455444 3557888876555555556666555544444 444455677889999998764
No 23
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=39.36 E-value=41 Score=28.47 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhh----HHHhHHHHHHHHh
Q 017724 330 EVVKQLRKNQPN----FASLLKDLEEHIC 354 (367)
Q Consensus 330 evv~elkk~~~~----f~~qleELeEhv~ 354 (367)
|=++.||++... -.++|++||+||.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334555555555 6778888888874
No 24
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.86 E-value=4.1e+02 Score=26.48 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=34.0
Q ss_pred cccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhh
Q 017724 292 KCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLC 356 (367)
Q Consensus 292 kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lC 356 (367)
..|..++.-+..+..+|+..++.+.---+ ....++.-++++......+..+|.+++.-...|
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~---el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQE---ELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555556666655555433321 112355566666666677777777766554444
No 25
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=37.11 E-value=7.7e+02 Score=29.17 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=49.1
Q ss_pred ccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccccCc
Q 017724 295 DTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQG 364 (367)
Q Consensus 295 DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~~~~ 364 (367)
++++.||.+|..-.|+++..-.-+ .+-+..++-++...++..++.+-.==|+|+.+-...|
T Consensus 787 p~~~kli~~l~~aee~~~~~~~d~---------~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~ 847 (1125)
T KOG0217|consen 787 PDLRKLIAHLDEAEERKKSSLSDL---------KRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKG 847 (1125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 789999999999888888776533 3356777778889999999999888888888766666
No 26
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=35.45 E-value=49 Score=31.91 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=17.4
Q ss_pred HHHHHhhCCCCcccHHHHH-HHHHhhhhhHHHhH
Q 017724 314 LVRLGLGGGKEKHSIQEVV-KQLRKNQPNFASLL 346 (367)
Q Consensus 314 ~v~fale~~~~~~~vkevv-~elkk~~~~f~~ql 346 (367)
+.++-.+++-.+.....++ +.+.++.+.+.+.+
T Consensus 105 l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (241)
T cd02435 105 ILYDLVQYGLVPLETAASTVTDLRKNPQALVDFL 138 (241)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHH
Confidence 4445555555544455444 46777655554443
No 27
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.26 E-value=1.1e+02 Score=25.36 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHH----Hhcceee--ccccccHHHHHHHHhhHh--HhhHHHHHHHhhCCCCcccHHHHHHHHH
Q 017724 271 KKELANAAQLDAA----RKGAYVL--NKCLDTIDRLVARLCTAI--EGDKQLVRLGLGGGKEKHSIQEVVKQLR 336 (367)
Q Consensus 271 kke~al~~Qldaa----akGTYIl--~kDlDTIsrLV~RL~deI--E~~~~~v~fale~~~~~~~vkevv~elk 336 (367)
++.+...+|++++ +-|.|=. ...+--++.-++++-.+| +|++..+.-+++.++.+..+.|+++.|+
T Consensus 13 ~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~vl~~hl~~cv~~a~~~~~~~~~i~el~~~~~ 86 (89)
T COG1937 13 NRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMREVLEEHLKECVKRAVEDGDEEESIDELIKALR 86 (89)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHhHHHHHHHHHH
Confidence 3445577899888 4455521 134445666677777766 7888888888877665455666665554
No 28
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=33.42 E-value=1.3e+02 Score=32.87 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhh
Q 017724 275 ANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGD 311 (367)
Q Consensus 275 al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~ 311 (367)
.+..+++.+..|-+-++.++ ...+++|..+++..
T Consensus 89 ~~~~~l~~~~~~~~~~~~~l---~~~~~~l~~~~~~~ 122 (779)
T PRK11091 89 RLVAKLEEMRERDLELNVQL---KDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34556666666655454444 55566666666443
No 29
>PHA02047 phage lambda Rz1-like protein
Probab=33.21 E-value=3.1e+02 Score=23.36 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcc--cHH-HHHHHHHhh
Q 017724 270 TKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKH--SIQ-EVVKQLRKN 338 (367)
Q Consensus 270 kkke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~--~vk-evv~elkk~ 338 (367)
.+..+.+..|||++.+ -+.++-+-|..|++.-|--..=++.+++...+.. +|- -|++.|.|.
T Consensus 33 h~~a~~la~qLE~a~~-------r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~PVPpaV~~~Lck~ 97 (101)
T PHA02047 33 HEEAKRQTARLEALEV-------RYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRPVPPAVVDSLCKR 97 (101)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHHHHHHHH
Confidence 3445568889998853 3456678899999998888888888998655431 222 466666654
No 30
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.56 E-value=1.3e+02 Score=26.38 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhcccceeehhhhHHHHHHHHHHHHHHHHHHhhccccccccchhhh
Q 017724 191 SRKFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALT 270 (367)
Q Consensus 191 ~~~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV~Aahalaglva~P~~~~~~~~~~k 270 (367)
..+...+++....-.++|..|...+++|+.-..-+.+.
T Consensus 49 ~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~------------------------------------------ 86 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQ------------------------------------------ 86 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------------------------------------------
Q ss_pred HHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhh
Q 017724 271 KKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGD 311 (367)
Q Consensus 271 kke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~ 311 (367)
.+.+...+..++--...|++.|-.+|.-|+..|.++
T Consensus 87 -----i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 87 -----IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred -----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 31
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=31.78 E-value=66 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHh
Q 017724 204 LKQKLDKNLQKSRS 217 (367)
Q Consensus 204 Ll~kL~s~k~K~~r 217 (367)
.|.++-.+..++++
T Consensus 14 FL~RvGr~q~~~r~ 27 (60)
T PF06072_consen 14 FLRRVGRQQHASRR 27 (60)
T ss_pred HHHHHhHHHHHHHH
Confidence 34555444434443
No 32
>COG5346 Predicted membrane protein [Function unknown]
Probab=31.67 E-value=1.4e+02 Score=26.48 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=27.8
Q ss_pred CCCCCc-chhhHHHHH----hhhHHHHHHHHHHHHHHHhhh
Q 017724 184 NPFHSP-DSRKFHEMH----RCFSDLKQKLDKNLQKSRSRV 219 (367)
Q Consensus 184 NPFs~~-~~~~Fq~v~----~~~~~Ll~kL~s~k~K~~rKl 219 (367)
.|+.++ ...++.+|+ ++.+-|-+|=+..|.+.++|.
T Consensus 36 ~~LPpp~~l~qYnsI~pnt~~rimaMAekEQahrH~~~~k~ 76 (136)
T COG5346 36 HILPPPDLLSQYNSIYPNTLQRIMAMAEKEQAHRHAIDLKN 76 (136)
T ss_pred ccCCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377664 457888886 677889999999999888774
No 33
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=29.37 E-value=1.7e+02 Score=21.39 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhcc
Q 017724 298 DRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPS 360 (367)
Q Consensus 298 srLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI 360 (367)
.|+..-|||.|-+....+.+-++. ..+.+.+..+...+.++++.+.+.-+...+
T Consensus 3 ~rIAreLHD~v~q~L~~i~~~l~~---------~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 56 (68)
T PF07730_consen 3 RRIARELHDGVGQSLTAIKMQLEA---------LRRRLADDPEEAREELEEIRELLREALQEL 56 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHTTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH---------HHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999998888666532 222333444566666666666665555444
No 34
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=29.29 E-value=54 Score=30.51 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=19.9
Q ss_pred HHHHHhhhhhHHHhHHHHHHHHhh
Q 017724 332 VKQLRKNQPNFASLLKDLEEHICL 355 (367)
Q Consensus 332 v~elkk~~~~f~~qleELeEhv~l 355 (367)
+..-|+....|++|++|||.|+--
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l~~ 130 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHLMR 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678889999999999998743
No 35
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.03 E-value=2.5e+02 Score=23.04 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhcccc
Q 017724 322 GKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFG 362 (367)
Q Consensus 322 ~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~~ 362 (367)
|++...++.-+++|++......++++++++.+..=...|-|
T Consensus 66 ~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPN 106 (108)
T PF02403_consen 66 GEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIPN 106 (108)
T ss_dssp TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34555677779999999999999999999998876666644
No 36
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=28.33 E-value=5.2e+02 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhHHHHhhc
Q 017724 116 SDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDN 156 (367)
Q Consensus 116 ~~Lv~~YFd~S~~As~lC~~Llk~I~~aR~~y~~I~~~L~~ 156 (367)
...|++..|.|..=+|+|+...-.+-+.+.+-+-++.+|.+
T Consensus 31 ~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRR 71 (231)
T PF03087_consen 31 EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRR 71 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999975
No 37
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=27.45 E-value=3.1e+02 Score=21.97 Aligned_cols=60 Identities=7% Similarity=0.029 Sum_probs=36.5
Q ss_pred ccHHHHHHHHhhHhHhhHHHHHHH---hhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhh
Q 017724 295 DTIDRLVARLCTAIEGDKQLVRLG---LGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICL 355 (367)
Q Consensus 295 DTIsrLV~RL~deIE~~~~~v~fa---le~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~l 355 (367)
++.+.++..|.||+.||+.--.-- +.. -+.-.-...=+.|......+.+.||.=++|||.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~-~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQ-MDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999998532211 111 111111233455666666777777777777764
No 38
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=27.18 E-value=7.5e+02 Score=25.96 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhccee
Q 017724 272 KELANAAQLDAARKGAYV 289 (367)
Q Consensus 272 ke~al~~QldaaakGTYI 289 (367)
....+...++.+++|-+-
T Consensus 219 pl~~l~~~~~~ia~Gdlt 236 (553)
T PRK15048 219 PLAKIIAHIREIAGGNLA 236 (553)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 334455566666777664
No 39
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=26.62 E-value=1.1e+02 Score=22.53 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=27.1
Q ss_pred cHHHHHHHHHhhhhhHHHhHHHHHHHHhhhh
Q 017724 327 SIQEVVKQLRKNQPNFASLLKDLEEHICLCF 357 (367)
Q Consensus 327 ~vkevv~elkk~~~~f~~qleELeEhv~lCf 357 (367)
++..+.+++.-..+...++|.+||++...=+
T Consensus 15 s~~~AA~~l~is~~~vs~~i~~LE~~lg~~L 45 (60)
T PF00126_consen 15 SISAAAEELGISQSAVSRQIKQLEEELGVPL 45 (60)
T ss_dssp SHHHHHHHCTSSHHHHHHHHHHHHHHHTS-S
T ss_pred CHHHHHHHhhccchHHHHHHHHHHHHhCCeE
Confidence 4889999999999999999999999886433
No 40
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.62 E-value=3e+02 Score=26.75 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=22.5
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Q 017724 193 KFHEMHRCFSDLKQKLDKNLQKSRSRVCFL 222 (367)
Q Consensus 193 ~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~i 222 (367)
....+.+...+|+++++....+.+++.+.+
T Consensus 121 ei~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 121 EIKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777888888888888888877755
No 41
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=26.54 E-value=1.2e+02 Score=28.40 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=37.6
Q ss_pred hHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccccCc
Q 017724 308 IEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQG 364 (367)
Q Consensus 308 IE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~~~~ 364 (367)
+++++..+..+ +.| ++..+.+++...++..+++|.+||++..-=.-.-.++|
T Consensus 9 l~~l~~f~~v~-~~g----s~t~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~r~ 60 (294)
T PRK09986 9 LKLLRYFLAVA-EEL----HFGRAAARLNISQPPLSIHIKELEDQLGTPLFIRHSRS 60 (294)
T ss_pred HHHHHHHHHHH-Hhc----CHHHHHHHhCCCCCHHHHHHHHHHHHhCCeeEeeCCCc
Confidence 56666666555 333 48899999999999999999999998765444334444
No 42
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=26.28 E-value=72 Score=22.32 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhhHHHhHHHHHH
Q 017724 330 EVVKQLRKNQPNFASLLKDLEE 351 (367)
Q Consensus 330 evv~elkk~~~~f~~qleELeE 351 (367)
-+++||.|-..++-..|+|||+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 5789999999999999999985
No 43
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=26.22 E-value=1.3e+02 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhhHHHhHHHHHHHHh
Q 017724 328 IQEVVKQLRKNQPNFASLLKDLEEHIC 354 (367)
Q Consensus 328 vkevv~elkk~~~~f~~qleELeEhv~ 354 (367)
++..-++|+........+|+||++-|.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888888888887664
No 44
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=25.78 E-value=2.5e+02 Score=24.77 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=36.9
Q ss_pred ccHHHHHHHHhhHhHhhHHHHHHHhhCCC------CcccHHHHHHHHHhhhhhHHHhHHHHHH
Q 017724 295 DTIDRLVARLCTAIEGDKQLVRLGLGGGK------EKHSIQEVVKQLRKNQPNFASLLKDLEE 351 (367)
Q Consensus 295 DTIsrLV~RL~deIE~~~~~v~fale~~~------~~~~vkevv~elkk~~~~f~~qleELeE 351 (367)
|.+...|+.+.+.+.+-..-++-+++.+= =..+-+.-|++|......+..+|++|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777777777777665555554443310 1235566688888888888888887753
No 45
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=25.48 E-value=8.7e+02 Score=26.18 Aligned_cols=87 Identities=15% Similarity=0.033 Sum_probs=48.8
Q ss_pred ccccc-cccc--hhhhHHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhC--CCCcc--cHHH
Q 017724 258 GPLCT-ACFP--CALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGG--GKEKH--SIQE 330 (367)
Q Consensus 258 ~P~~~-~~~~--~~~kkke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~--~~~~~--~vke 330 (367)
.|+++ .+.. .....+...+..+|+-..--+=-+++.++.+..-|.+|+++++.+...|..+-.- .+.+| .-.+
T Consensus 435 LPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~ 514 (560)
T PF06160_consen 435 LPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPE 514 (560)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHH
Confidence 57775 2221 1222344456666665555555556677777777888888888887777655321 01111 2225
Q ss_pred HHHHHHhhhhhHHH
Q 017724 331 VVKQLRKNQPNFAS 344 (367)
Q Consensus 331 vv~elkk~~~~f~~ 344 (367)
|-..|.+-..-|.+
T Consensus 515 v~~al~~Ae~~F~~ 528 (560)
T PF06160_consen 515 VDEALTEAEDLFRN 528 (560)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666666655
No 46
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.87 E-value=5.1e+02 Score=23.29 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=14.7
Q ss_pred HHHhhhhhHHHhHHHHHHHHhhhhhcc
Q 017724 334 QLRKNQPNFASLLKDLEEHICLCFRPS 360 (367)
Q Consensus 334 elkk~~~~f~~qleELeEhv~lCf~tI 360 (367)
++++..+...++++++++..-.|+..|
T Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~kv 83 (151)
T PF14584_consen 57 ELKEELEELEKRIEELEEKLRNCVQKV 83 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceE
Confidence 333444445556666666666665443
No 47
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.73 E-value=2.7e+02 Score=27.03 Aligned_cols=45 Identities=11% Similarity=0.008 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHH
Q 017724 271 KKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLV 315 (367)
Q Consensus 271 kke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v 315 (367)
.+...+..+++.-..+-.=+.+.+|.+.+=|+||+..||....-+
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l 84 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQL 84 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333334444444444444556778888888888888888766443
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.56 E-value=4e+02 Score=23.88 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=6.1
Q ss_pred cccHHHHHHHHhhHhH
Q 017724 294 LDTIDRLVARLCTAIE 309 (367)
Q Consensus 294 lDTIsrLV~RL~deIE 309 (367)
++.++..+.-+..+++
T Consensus 97 l~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 97 LDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 49
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.88 E-value=86 Score=35.76 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=51.6
Q ss_pred eeccccccHHHHHHHHhhHhHhhHHHHHHHh-hCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhcc
Q 017724 289 VLNKCLDTIDRLVARLCTAIEGDKQLVRLGL-GGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPS 360 (367)
Q Consensus 289 Il~kDlDTIsrLV~RL~deIE~~~~~v~fal-e~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI 360 (367)
.+.+.|||...-+.|-...+|.-.+.+..+. +.......++..+.|-|.+.++|-+++.|||..-+.-.+++
T Consensus 295 ~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dv 367 (1265)
T KOG0976|consen 295 ELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDV 367 (1265)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhH
Confidence 4556677777777777766666666666555 22334457888999999999999999999998766555543
No 50
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=23.31 E-value=2.3e+02 Score=23.14 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=31.5
Q ss_pred cccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhH
Q 017724 294 LDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLL 346 (367)
Q Consensus 294 lDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~ql 346 (367)
.+++..|+..++|.++.-.+.++.+= + ..++....++......+...|
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~~~~~-~----~~lk~~f~~~~~~~~~~~~~L 50 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAAEKAE-D----PELKSLFQEFAQERQQHAEEL 50 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---S----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999998883 1 345555555555544444333
No 51
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=23.27 E-value=2.9e+02 Score=22.81 Aligned_cols=52 Identities=8% Similarity=0.150 Sum_probs=23.7
Q ss_pred HHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhc
Q 017724 302 ARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRP 359 (367)
Q Consensus 302 ~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~t 359 (367)
+|.+-.|+.+..|+ +.+.++..+=.-+.-.+.-..++...+ |++|+--|...
T Consensus 16 ~RIeGQv~gI~~Mi----ee~~~C~dIl~Ql~Avr~Al~~~~~~v--l~~hl~~cv~~ 67 (90)
T PRK15039 16 SKIQGQVVALKKML----DEPHECAAVLQQIAAIRGAVNGLMREV--IKGHLTEHIVH 67 (90)
T ss_pred HHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 44444555555554 333443322222333344444444444 66666666554
No 52
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=22.67 E-value=1.4e+02 Score=31.64 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=19.4
Q ss_pred HHHHHHHHhcceeeccccccHHHHHHHHhh----HhHhhHHHHHHHhhCCC
Q 017724 277 AAQLDAARKGAYVLNKCLDTIDRLVARLCT----AIEGDKQLVRLGLGGGK 323 (367)
Q Consensus 277 ~~QldaaakGTYIl~kDlDTIsrLV~RL~d----eIE~~~~~v~fale~~~ 323 (367)
.+|+.-++++ ++.+||.-||.+ .+..++..++..|=-|.
T Consensus 264 e~q~~ri~Re--------e~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~ 306 (453)
T PLN03098 264 EEQMSQITRD--------ETLSRLPVRLSTNRIVELVQLRDITRPVILAGT 306 (453)
T ss_pred HHHHHHHHhh--------hhhccceEeccCCCEEeHHHhcCcceEEEEECC
Confidence 3455555555 555666666654 13444444554443333
No 53
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.38 E-value=1.2e+02 Score=22.73 Aligned_cols=8 Identities=13% Similarity=-0.022 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 017724 274 LANAAQLD 281 (367)
Q Consensus 274 ~al~~Qld 281 (367)
..++++++
T Consensus 51 ~~~~k~l~ 58 (68)
T PF06305_consen 51 RRLRKELK 58 (68)
T ss_pred HHHHHHHH
Confidence 33444433
No 54
>PHA00652 hypothetical protein
Probab=22.20 E-value=2.2e+02 Score=25.24 Aligned_cols=56 Identities=9% Similarity=-0.017 Sum_probs=40.0
Q ss_pred HHHhhHhHhhHHHHHHHhhCCCCc-ccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccccCcc
Q 017724 302 ARLCTAIEGDKQLVRLGLGGGKEK-HSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQGL 365 (367)
Q Consensus 302 ~RL~deIE~~~~~v~fale~~~~~-~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~~~~~ 365 (367)
..|+.|++-++..+|++.+-..-+ .+. +.-+.+.++++|+|.-+.=+..++++||-
T Consensus 69 ~~ld~eLd~LR~~vRLa~~l~~~~~i~~--------~rYe~~~~~l~EIGrmLGGWIks~~~~~~ 125 (128)
T PHA00652 69 YAADAGLAMLRFWLRFLAGIQKPHAMTP--------HQVETAQVLIAEVGRILGSWIARVNRKGQ 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCH--------HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456667777777777775211100 011 56788999999999999999999999984
No 55
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=2.7e+02 Score=26.17 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHhhhhhHHHhHHHHHHHHhh
Q 017724 325 KHSIQEVVKQLRKNQPNFASLLKDLEEHICL 355 (367)
Q Consensus 325 ~~~vkevv~elkk~~~~f~~qleELeEhv~l 355 (367)
+|++.|+-.-|+||..+-.++++.+++.+..
T Consensus 123 EY~leEAeaLLkknl~sa~k~l~~~~~Dldf 153 (187)
T KOG3313|consen 123 EYDLEEAEALLKKNLTSAVKSLDVLEEDLDF 153 (187)
T ss_pred EecHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999998764
No 56
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=21.91 E-value=2.6e+02 Score=20.69 Aligned_cols=40 Identities=10% Similarity=0.244 Sum_probs=23.7
Q ss_pred cCCCCCCcchhhHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Q 017724 182 LHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSRSRVCF 221 (367)
Q Consensus 182 ~~NPFs~~~~~~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ 221 (367)
+.+-+.+.....|+..+.+...-..++......+.+.|+.
T Consensus 37 l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~ 76 (86)
T PF06013_consen 37 LQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQALRQ 76 (86)
T ss_dssp HGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666665543
No 57
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.43 E-value=3.3e+02 Score=25.14 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=42.1
Q ss_pred hhhhHHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCC
Q 017724 267 CALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKE 324 (367)
Q Consensus 267 ~~~kkke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~ 324 (367)
..++-+......++.-+.+++--+.-.-..+.+-++.+..+++.+-.-+..|+..|++
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~e 83 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRE 83 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3355555556666666655555555666678888888889999999999999988764
No 58
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.97 E-value=3.1e+02 Score=25.95 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=57.2
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCC-CcccHHHHHHHHHhhh
Q 017724 261 CTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGK-EKHSIQEVVKQLRKNQ 339 (367)
Q Consensus 261 ~~~~~~~~~kkke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~-~~~~vkevv~elkk~~ 339 (367)
+.-|=--.++|....|-.++..+.+++-=-.++-+.=..||.+ |.|.++..=+-=+..-+ .......-++.++...
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~---e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl 169 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKR---EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDL 169 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHH---HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Confidence 3456666677766667777777755544325566666777776 66666654433332110 1112224467888888
Q ss_pred hhHHHhHHHHHHHHh
Q 017724 340 PNFASLLKDLEEHIC 354 (367)
Q Consensus 340 ~~f~~qleELeEhv~ 354 (367)
+...+|++-||+|+.
T Consensus 170 ~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 170 DTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999973
No 59
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.70 E-value=2.8e+02 Score=25.41 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=6.0
Q ss_pred HHHHHHHHhhHhHhhH
Q 017724 297 IDRLVARLCTAIEGDK 312 (367)
Q Consensus 297 IsrLV~RL~deIE~~~ 312 (367)
+++.++.-+..|+++.
T Consensus 73 ~~~~l~ea~~~i~~i~ 88 (199)
T PF10112_consen 73 IREILEEAKEKIRRIE 88 (199)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 60
>PRK10082 cell density-dependent motility repressor; Provisional
Probab=20.36 E-value=1.5e+02 Score=28.19 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=39.2
Q ss_pred HhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccccCc
Q 017724 307 AIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQG 364 (367)
Q Consensus 307 eIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~~~~ 364 (367)
.+++++..+..+ +.| ++..+.++|...++..+++|.+||+++..=.-.-.++|
T Consensus 12 ~~~~l~~F~av~-e~g----S~t~AA~~L~iSQpavS~~I~~LE~~lG~~Lf~R~~r~ 64 (303)
T PRK10082 12 ETKWLYDFLTLE-KCR----NFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNRQVTP 64 (303)
T ss_pred chHHHHHHHHHH-hcC----CHHHHHHHhCCChHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 355666666555 333 48899999999999999999999999875444444444
No 61
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=20.06 E-value=4.9e+02 Score=27.19 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhhHhHhhHHHHHHHhhC---------CCCc-------ccHHHHHHHHHhhhhhHH-HhHHHHHHHHh
Q 017724 295 DTIDRLVARLCTAIEGDKQLVRLGLGG---------GKEK-------HSIQEVVKQLRKNQPNFA-SLLKDLEEHIC 354 (367)
Q Consensus 295 DTIsrLV~RL~deIE~~~~~v~fale~---------~~~~-------~~vkevv~elkk~~~~f~-~qleELeEhv~ 354 (367)
|.=-|+-+.|||.|...+--+++++|- ++.. ..+-.+++|.|+---.++ .-|+||+=.+.
T Consensus 249 dEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~~a~~aieKaa~aL~~Ai~EVRRiSH~LRP~~LDDLGL~aA 325 (459)
T COG4564 249 DERARLARELHDGISQNLVSVKCALELAARQLNPPKGGAHPAIEKAADALNGAIKEVRRISHDLRPRALDDLGLTAA 325 (459)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHHHHHHHHHHHHHhccccChhhhhhhhHHHH
Confidence 455688999999999999999999873 1111 234456666665443333 34556655543
No 62
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=20.02 E-value=1.2e+03 Score=25.82 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHhcceee-------ccccccHHHHHHHHhhHhHhhHHH
Q 017724 269 LTKKELANAAQLDAARKGAYVL-------NKCLDTIDRLVARLCTAIEGDKQL 314 (367)
Q Consensus 269 ~kkke~al~~QldaaakGTYIl-------~kDlDTIsrLV~RL~deIE~~~~~ 314 (367)
+.+....+...+..++.|-+-. ...+|.|.++++.+.+-+..+...
T Consensus 356 i~~pL~~l~~~~~~ia~Gdl~~~~~~~~~~~e~dei~~l~~~~~~~~~~L~~~ 408 (914)
T PRK11466 356 VTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSNVHALNRH 408 (914)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777778887632 234577777777766655554433
Done!