Query 017724
Match_columns 367
No_of_seqs 97 out of 99
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 74.9 2 6.8E-05 26.5 2.3 16 205-220 10-25 (27)
2 4ddg_A Ubiquitin-conjugating e 51.0 3.1 0.00011 41.2 -0.1 43 324-367 178-220 (399)
3 1deq_A Fibrinogen (alpha chain 50.9 41 0.0014 33.4 7.8 66 284-359 97-163 (390)
4 3twe_A Alpha4H; unknown functi 47.4 21 0.00072 21.9 3.2 23 195-217 4-26 (27)
5 1lq7_A Alpha3W; three helix bu 44.1 32 0.0011 25.1 4.4 19 332-350 27-45 (67)
6 2r25_A Phosphorelay intermedia 41.2 94 0.0032 27.3 7.9 68 113-184 25-93 (167)
7 3t98_B Nucleoporin NUP58/NUP45 41.1 22 0.00074 28.5 3.5 30 329-358 11-40 (93)
8 4g3b_A Alpha4F3D; alpha helix, 33.8 47 0.0016 20.2 3.2 19 197-215 6-24 (26)
9 2iub_A CORA, divalent cation t 32.4 3.3E+02 0.011 25.8 11.0 43 175-217 243-286 (363)
10 3mtu_E Head morphogenesis prot 31.5 42 0.0014 26.1 3.5 25 330-354 30-54 (77)
11 3ol1_A Vimentin; structural ge 30.3 1.1E+02 0.0038 25.0 6.3 84 266-352 15-98 (119)
12 3oz2_A Digeranylgeranylglycero 24.7 2E+02 0.0068 26.0 7.6 97 241-349 300-396 (397)
13 2fjc_A Antigen TPF1; mini ferr 24.6 1.1E+02 0.0037 25.6 5.4 50 294-355 100-149 (156)
14 3kwo_A Putative bacterioferrit 23.5 1.2E+02 0.0041 25.3 5.4 107 193-355 35-141 (152)
15 4ev6_A Magnesium transport pro 23.5 4.6E+02 0.016 24.5 12.0 42 176-217 220-262 (339)
16 4eve_A Neutrophil-activating p 23.4 1.2E+02 0.004 25.9 5.4 106 193-354 52-157 (164)
17 1o9r_A Agrobacterium tumefacie 22.1 1.3E+02 0.0044 25.3 5.4 49 295-355 105-153 (162)
18 3ck6_A Putative membrane trans 21.5 2E+02 0.0068 25.5 6.8 39 178-216 196-234 (252)
19 3iq1_A DPS family protein; csg 21.2 1.1E+02 0.0039 25.6 4.8 106 193-355 48-153 (159)
20 2chp_A MRGA, metalloregulation 20.8 1.5E+02 0.005 24.8 5.4 104 193-354 42-146 (153)
21 3ljw_A Protein polybromo-1; al 20.6 2.2E+02 0.0077 22.7 6.3 40 310-352 78-117 (120)
22 2c2u_A DPS, DNA-binding stress 20.6 1.6E+02 0.0053 26.4 5.8 54 294-359 147-200 (207)
23 3te3_A Polycystic kidney disea 20.5 52 0.0018 22.4 1.9 34 286-319 1-34 (39)
24 3qfl_A MLA10; coiled-coil, (CC 20.5 3E+02 0.01 21.9 7.0 42 296-337 23-66 (115)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=74.92 E-value=2 Score=26.50 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhh
Q 017724 205 KQKLDKNLQKSRSRVC 220 (367)
Q Consensus 205 l~kL~s~k~K~~rKlk 220 (367)
|+.|+.+.+|+++|+|
T Consensus 10 ledlqerlrklrkklr 25 (27)
T 3twe_A 10 LEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445555667777776
No 2
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=51.04 E-value=3.1 Score=41.25 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=36.8
Q ss_pred CcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccccCcccC
Q 017724 324 EKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQGLCF 367 (367)
Q Consensus 324 ~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~~~~~~~ 367 (367)
+..++....+|-.++...|.+++.+|.++ |.+++.|+|-|=||
T Consensus 178 ~~~~~~~L~~eY~~~~~~~~~k~~~L~~~-y~~~R~vrgDGNCF 220 (399)
T 4ddg_A 178 ERLELSVLYKEYAEDDNIYQQKIKDLHKK-YSYIRKTRPDGNSF 220 (399)
T ss_dssp CCEEGGGHHHHSCTTCHHHHHHHHHHHHH-CSEEECBCCSSCHH
T ss_pred CcCCHHHHHHHhhccChHHHHHHHHHHhh-cCeeeeecCCCchH
Confidence 34456666788888888999999999987 99999999999997
No 3
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.89 E-value=41 Score=33.44 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=50.0
Q ss_pred Hhcceeecccccc-HHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhc
Q 017724 284 RKGAYVLNKCLDT-IDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRP 359 (367)
Q Consensus 284 akGTYIl~kDlDT-IsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~t 359 (367)
=|+++...+|.|+ +..+-+-|+..|+.++..|+-=|. -|+.|+.+.+..+.+|.-||.-|+.|...
T Consensus 97 lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~----------~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~ 163 (390)
T 1deq_A 97 MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ----------RINLLQKNVRDQLVDMKRLEVDIDIKIRS 163 (390)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666666665 455556788888888888755432 47889999999999999999999999764
No 4
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=47.44 E-value=21 Score=21.93 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Q 017724 195 HEMHRCFSDLKQKLDKNLQKSRS 217 (367)
Q Consensus 195 q~v~~~~~~Ll~kL~s~k~K~~r 217 (367)
..+|+...+|.++|+.-++|++.
T Consensus 4 delykeledlqerlrklrkklrs 26 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788888999999999999874
No 5
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=44.09 E-value=32 Score=25.15 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=14.2
Q ss_pred HHHHHhhhhhHHHhHHHHH
Q 017724 332 VKQLRKNQPNFASLLKDLE 350 (367)
Q Consensus 332 v~elkk~~~~f~~qleELe 350 (367)
+.+|+|+.+.+.+.+|||+
T Consensus 27 ieelkkkweelkkkieelg 45 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELG 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 5777788877777777764
No 6
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=41.23 E-value=94 Score=27.29 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=40.7
Q ss_pred Cch-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcCCCCCCCcccccchHHHHHHHhhhhcCC
Q 017724 113 NSL-SDLFSTSFDHSEKTTNLCLQLLKSLFCIRTLYAPVCELLDNFPLDHHSVTQSQCDNAFEVFLQFDSLHN 184 (367)
Q Consensus 113 ~eL-~~Lv~~YFd~S~~As~lC~~Llk~I~~aR~~y~~I~~~L~~~~~e~~~~~~~~~~~~l~~l~~F~~~~N 184 (367)
|+. ..+|..||+.+.+.. ..|.+++. ....|..+..+.++|...+..++-.+-...-..+..+...+|
T Consensus 25 p~Fv~elV~~F~edse~~l---~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~~~C~~le~~~r~~n 93 (167)
T 2r25_A 25 SDFSKGLIIQFIDQAQTTF---AQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKME 93 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHH---HHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHhHHHHH---HHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 443 689999999887543 33444443 123456677777666544333444554555556677777777
No 7
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=41.11 E-value=22 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHhhhhh
Q 017724 329 QEVVKQLRKNQPNFASLLKDLEEHICLCFR 358 (367)
Q Consensus 329 kevv~elkk~~~~f~~qleELeEhv~lCf~ 358 (367)
...++++++....++.+|||+|.|+.....
T Consensus 11 ~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 11 RVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 367899999999999999999999987654
No 8
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=33.84 E-value=47 Score=20.22 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=9.3
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 017724 197 MHRCFSDLKQKLDKNLQKS 215 (367)
Q Consensus 197 v~~~~~~Ll~kL~s~k~K~ 215 (367)
.|+...+..++|...++|+
T Consensus 6 ~ykeled~qerlrk~rkkl 24 (26)
T 4g3b_A 6 XYKELEDXQERLRKXRKKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555555555554444443
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=32.37 E-value=3.3e+02 Score=25.83 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=30.0
Q ss_pred HHHhhhhcCCCCCC-cchhhHHHHHhhhHHHHHHHHHHHHHHHh
Q 017724 175 VFLQFDSLHNPFHS-PDSRKFHEMHRCFSDLKQKLDKNLQKSRS 217 (367)
Q Consensus 175 ~l~~F~~~~NPFs~-~~~~~Fq~v~~~~~~Ll~kL~s~k~K~~r 217 (367)
.+..+....+|+-. +....|+++++....+.+.++.-+..+..
T Consensus 243 vl~~L~~~~~~~~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~ 286 (363)
T 2iub_A 243 VLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVETFRDIVSG 286 (363)
T ss_dssp HHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455443 34567999999999999999888777764
No 10
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=31.50 E-value=42 Score=26.10 Aligned_cols=25 Identities=44% Similarity=0.607 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhhHHHhHHHHHHHHh
Q 017724 330 EVVKQLRKNQPNFASLLKDLEEHIC 354 (367)
Q Consensus 330 evv~elkk~~~~f~~qleELeEhv~ 354 (367)
+.+.++|-+-..|.++|++||+-++
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~ 54 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVA 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998653
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.29 E-value=1.1e+02 Score=24.99 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=46.3
Q ss_pred chhhhHHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHh
Q 017724 266 PCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASL 345 (367)
Q Consensus 266 ~~~~kkke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~q 345 (367)
...+..+...+..|+|.+.+..--+.-++|++...++.+...-|.-..+ +-.+|+ +...++-++++.--....+..+
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~-r~~~E~--di~~lrK~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ-REEAEN--TLQSFRQDVDNASLARLDLERK 91 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHH--HHHHhhhcccHHHHHHHHHHHH
Confidence 4556677778999999885444344457778887777766555543322 122221 2223444555444444444455
Q ss_pred HHHHHHH
Q 017724 346 LKDLEEH 352 (367)
Q Consensus 346 leELeEh 352 (367)
++-|.|-
T Consensus 92 iesL~eE 98 (119)
T 3ol1_A 92 VESLQEE 98 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 12
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=24.69 E-value=2e+02 Score=26.01 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhh
Q 017724 241 TIATVGVATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLG 320 (367)
Q Consensus 241 ~i~~vV~Aahalaglva~P~~~~~~~~~~kkke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale 320 (367)
++....+||.+++..+... .+....+++|++..+++..-...-.|. +..++.++.|+ .+..+++++-+
T Consensus 300 A~~~g~~~A~~i~~~l~~~---~~~~~~L~~Ye~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~ 367 (397)
T 3oz2_A 300 AIVSGMYAAQVTKEAIESN---DYSPQMMQKYEKLIKERFERKHLRNWV-------AKEKLAMLSDD--TLDKLVDIVSE 367 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHTCCHH--HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcC---CccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCHH--HHHHHHHHHhH
Confidence 4444445555554433211 123466778877655443322111121 12233333332 12334455433
Q ss_pred CCCCcccHHHHHHHHHhhhhhHHHhHHHH
Q 017724 321 GGKEKHSIQEVVKQLRKNQPNFASLLKDL 349 (367)
Q Consensus 321 ~~~~~~~vkevv~elkk~~~~f~~qleEL 349 (367)
..-........++.+.++.....+.|.+|
T Consensus 368 ~~~~~~~~~~~~k~~~~~~p~~~~~l~~l 396 (397)
T 3oz2_A 368 QVLTTISVEAILKAIAEKYPEVVKELEDL 396 (397)
T ss_dssp SCBCSCSHHHHHHHHHHHCGGGGGGGGGG
T ss_pred HHhhhcCHHHHHHHHHHHCHHHHHHHHHh
Confidence 33334567777888888877777766554
No 13
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=24.62 E-value=1.1e+02 Score=25.64 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=34.3
Q ss_pred cccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhh
Q 017724 294 LDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICL 355 (367)
Q Consensus 294 lDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~l 355 (367)
-+-+..+++....-|+..+..++.|-+.++. .. ..-|.+.+++.|+|+..
T Consensus 100 ~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~--~T----------~dll~~il~~~Ek~~w~ 149 (156)
T 2fjc_A 100 VSALARVKRDFEYLSTRFSQTQVLAAESGDA--VT----------DGIITDILRTLGKAIWM 149 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCH--HH----------HHHHHHHHHHHHHHHHH
Confidence 3568888888889999999999999765441 22 23455566666666643
No 14
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=23.47 E-value=1.2e+02 Score=25.28 Aligned_cols=107 Identities=11% Similarity=0.070 Sum_probs=63.3
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhcccceeehhhhHHHHHHHHHHHHHHHHHHhhccccccccchhhhHH
Q 017724 193 KFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKK 272 (367)
Q Consensus 193 ~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV~Aahalaglva~P~~~~~~~~~~kkk 272 (367)
+|..+|..+..+-..+...-..+..|++.+-+ .|.+. .+.+
T Consensus 35 ~F~~lH~~~ee~~~~~~~~~D~iAERI~~LGg---------------------------------~P~~t------~~~~ 75 (152)
T 3kwo_A 35 QFFSIHEYTEKAYEEMAELFDSCAERVLQLGE---------------------------------KAITC------QKVL 75 (152)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------------CCCCC------HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------------CCCCC------HHHH
Confidence 79999999999988888888888888664311 23322 1110
Q ss_pred HHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHH
Q 017724 273 ELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEH 352 (367)
Q Consensus 273 e~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEh 352 (367)
.+ ...+.-...|. ...-+-+..+++....-|+.++..++.|-+.++ . .. ..-|.+.++++|+|
T Consensus 76 ~~--~s~i~e~~~~~---~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D-~-~T----------~dll~~~l~~~Ek~ 138 (152)
T 3kwo_A 76 ME--NAKSPKVAKDC---FTPLEVIELIKQDYEYLLAEFKKLNEAAEKESD-T-TT----------AAFAQENIAKYEKS 138 (152)
T ss_dssp HH--HCCSCCCCCSC---BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-H-HH----------HHHHHHHHHHHHHH
T ss_pred Hh--HCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-H-HH----------HHHHHHHHHHHHHH
Confidence 00 00000011221 134466788888888899999999999966544 1 22 23355556666666
Q ss_pred Hhh
Q 017724 353 ICL 355 (367)
Q Consensus 353 v~l 355 (367)
+..
T Consensus 139 ~w~ 141 (152)
T 3kwo_A 139 LWM 141 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 15
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.46 E-value=4.6e+02 Score=24.49 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=29.7
Q ss_pred HHhhhhcCCCCCC-cchhhHHHHHhhhHHHHHHHHHHHHHHHh
Q 017724 176 FLQFDSLHNPFHS-PDSRKFHEMHRCFSDLKQKLDKNLQKSRS 217 (367)
Q Consensus 176 l~~F~~~~NPFs~-~~~~~Fq~v~~~~~~Ll~kL~s~k~K~~r 217 (367)
+..+.....|+.. +....|+++++....+.+.++.-+..+..
T Consensus 220 l~~L~~~~~~~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~ 262 (339)
T 4ev6_A 220 LVLLKRKYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTS 262 (339)
T ss_dssp HHHHHHSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555544 44567999999999999998887777763
No 16
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=23.39 E-value=1.2e+02 Score=25.90 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=65.1
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhcccceeehhhhHHHHHHHHHHHHHHHHHHhhccccccccchhhhHH
Q 017724 193 KFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKK 272 (367)
Q Consensus 193 ~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV~Aahalaglva~P~~~~~~~~~~kkk 272 (367)
+|..+|..+..+-..+...-+.+..|++.+-. .|.+. .+.+
T Consensus 52 ~F~~lH~~~ee~~~e~~~~~D~lAERI~~LGg---------------------------------~P~~t------~~~~ 92 (164)
T 4eve_A 52 DFFNVHKATEEIYEEFADMFDDLAERIVQLGH---------------------------------HPLVT------LSEA 92 (164)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------------------CCCCC------HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------------CCCCC------HHHH
Confidence 78899998888888888888888888664311 23322 1111
Q ss_pred HHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHH
Q 017724 273 ELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEH 352 (367)
Q Consensus 273 e~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEh 352 (367)
.+ ...+.-...|.| ..-+-|..+++....-|+.++..++.|-+.++ . .. ..-|.+.++++|+|
T Consensus 93 ~~--~s~i~e~~~~~~---~~~eml~~ll~~~~~~i~~~r~~i~~aee~~D-~-~T----------~dll~~il~~~Ek~ 155 (164)
T 4eve_A 93 IK--LTRVKEETKTSF---HSKDIFKEILEDYKHLEKEFKELSNTAEKEGD-K-VT----------VTYADDQLAKLQKS 155 (164)
T ss_dssp HH--HCCSCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-H-HH----------HHHHHHHHHHHHHH
T ss_pred HH--HcCCCcCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-H-HH----------HHHHHHHHHHHHHH
Confidence 00 000011123333 34566888889999999999999999966544 1 22 23355667777777
Q ss_pred Hh
Q 017724 353 IC 354 (367)
Q Consensus 353 v~ 354 (367)
+.
T Consensus 156 ~W 157 (164)
T 4eve_A 156 IW 157 (164)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 17
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=22.13 E-value=1.3e+02 Score=25.28 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=33.2
Q ss_pred ccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhh
Q 017724 295 DTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICL 355 (367)
Q Consensus 295 DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~l 355 (367)
+-+..+++....-|+..+..++.|-+.++ . . ...-|.+.++++|+|+..
T Consensus 105 eml~~~l~~~~~~i~~~r~~i~~a~~~~D-~-~----------T~dll~~il~~~Ek~~w~ 153 (162)
T 1o9r_A 105 DHLDALIERYGEVANMIRKAIDDSDEAGD-P-T----------TADIFTAASRDLDKSLWF 153 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-H-H----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-H-H----------HHHHHHHHHHHHHHHHHH
Confidence 55778888888889999999999976544 1 1 223355556666666643
No 18
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=21.53 E-value=2e+02 Score=25.48 Aligned_cols=39 Identities=5% Similarity=0.162 Sum_probs=28.0
Q ss_pred hhhhcCCCCCCcchhhHHHHHhhhHHHHHHHHHHHHHHH
Q 017724 178 QFDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKSR 216 (367)
Q Consensus 178 ~F~~~~NPFs~~~~~~Fq~v~~~~~~Ll~kL~s~k~K~~ 216 (367)
.+....+|++.+....|++++++...+.+.+++-+..+.
T Consensus 196 ~L~r~~~~~~~~~~~~~rdv~d~~~~~~e~i~~~re~~~ 234 (252)
T 3ck6_A 196 DLIESESELVTSRPHQYRFAHNNITRINETIEFYLGEVA 234 (252)
T ss_dssp HHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443334556899999999999999998887764
No 19
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=21.15 E-value=1.1e+02 Score=25.62 Aligned_cols=106 Identities=15% Similarity=0.305 Sum_probs=63.6
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhcccceeehhhhHHHHHHHHHHHHHHHHHHhhccccccccchhhhHH
Q 017724 193 KFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKK 272 (367)
Q Consensus 193 ~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV~Aahalaglva~P~~~~~~~~~~kkk 272 (367)
+|..+|..+..+-..+...-+.+..|++.+-+ .|.+. .+.+
T Consensus 48 ~F~~lH~~~ee~~~~~~~~~D~lAERI~~LGg---------------------------------~P~~t------~~~~ 88 (159)
T 3iq1_A 48 EFFELHAKFEEIYTDLQLKIDELAERILTLSA---------------------------------RPMHS------FSGY 88 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------------------CCCCS------HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------------CCCCC------HHHH
Confidence 68889998888888888888888877664311 23332 1111
Q ss_pred HHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHH
Q 017724 273 ELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEH 352 (367)
Q Consensus 273 e~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEh 352 (367)
.+ + ..+.-. .|.+ ..-+-+..+++....-|+.++..++.|-+.++. . ...-|.+.++++|+|
T Consensus 89 ~~-~-s~i~e~-~~~~---~~~eml~~ll~~~~~~i~~~r~~i~~ae~~~D~--~----------T~dll~~~l~~~Ek~ 150 (159)
T 3iq1_A 89 LK-A-AQIKEH-TDSI---DGRSSMQGLVDGFSILLHQQRDILELAGETGDE--G----------TSALMSDYIREQEKL 150 (159)
T ss_dssp HH-H-CSSCCC-CCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH--H----------HHHHHHHHHHHHHHH
T ss_pred HH-H-CCCCcc-CCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCH--H----------HHHHHHHHHHHHHHH
Confidence 00 0 000000 1211 344567888888888899999999988665431 1 223466667777777
Q ss_pred Hhh
Q 017724 353 ICL 355 (367)
Q Consensus 353 v~l 355 (367)
+..
T Consensus 151 ~Wm 153 (159)
T 3iq1_A 151 VWM 153 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 20
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=20.79 E-value=1.5e+02 Score=24.75 Aligned_cols=104 Identities=14% Similarity=0.220 Sum_probs=61.0
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhcccceeehhhhHHHHHHHHHHHHHHHHHHhhccccccccchhhhHH
Q 017724 193 KFHEMHRCFSDLKQKLDKNLQKSRSRVCFLRYATAGSSVCIIGTAVGVTIATVGVATHAIFAIFAGPLCTACFPCALTKK 272 (367)
Q Consensus 193 ~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ir~~~~vS~i~~Vaa~~av~i~~vV~Aahalaglva~P~~~~~~~~~~kkk 272 (367)
.|..+|..+..+-......-..+..|++.+-+ .|.+. .+.+
T Consensus 42 ~f~~lh~~~ee~~~e~~~~~D~lAERI~~LGg---------------------------------~P~~~------~~~~ 82 (153)
T 2chp_A 42 HFFTLHEKFEELYDHAAETVDTIAERLLAIGG---------------------------------QPVAT------VKEY 82 (153)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------------------CCCCS------HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------CCCCC------HHHH
Confidence 68889988888888888888888777654311 23222 1110
Q ss_pred HHHHHHHHHHHHhcceeec-cccccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHH
Q 017724 273 ELANAAQLDAARKGAYVLN-KCLDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEE 351 (367)
Q Consensus 273 e~al~~QldaaakGTYIl~-kDlDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeE 351 (367)
++...-+-+-.. ..-+-+..+++....-|+..+..++.|-+.++. . ...-|.+.+++.|+
T Consensus 83 -------~~~s~i~e~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~--~----------T~dll~~il~~~Ek 143 (153)
T 2chp_A 83 -------TEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDN--A----------TADLFVGLIEEVEK 143 (153)
T ss_dssp -------HHHCSSCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--H----------HHHHHHHHHHHHHH
T ss_pred -------HhHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCH--H----------HHHHHHHHHHHHHH
Confidence 011101111111 223557778888888889999999998665441 1 22345566666677
Q ss_pred HHh
Q 017724 352 HIC 354 (367)
Q Consensus 352 hv~ 354 (367)
|+.
T Consensus 144 ~~w 146 (153)
T 2chp_A 144 QVW 146 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 21
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=20.61 E-value=2.2e+02 Score=22.72 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=22.0
Q ss_pred hhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHH
Q 017724 310 GDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEH 352 (367)
Q Consensus 310 ~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEh 352 (367)
-++.+...|..-.+....+-...+.|+ ..|.+++.++++|
T Consensus 78 D~~li~~Na~~yN~~~s~~~~~A~~L~---~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 78 DIDLLAKNAKTYNEPGSQVFKDANSIK---KIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHH---HHHHHHHHHhhhc
Confidence 334444445432222234555666665 4677888888776
No 22
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=20.59 E-value=1.6e+02 Score=26.38 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=36.7
Q ss_pred cccHHHHHHHHhhHhHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhc
Q 017724 294 LDTIDRLVARLCTAIEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRP 359 (367)
Q Consensus 294 lDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~t 359 (367)
-+-+..+++....-|+.++..++.|-+.++. .. ..-|.+.|++.|+|+..-...
T Consensus 147 ~emL~~ll~~e~~~i~~~re~i~~aee~~D~--~T----------~dLl~~il~~~EkhiW~L~a~ 200 (207)
T 2c2u_A 147 RTQVADLVQDLSRVGKGYRDDSQACDEANDP--VT----------ADMYNGYAATIDKIRWMLQAI 200 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888889999999999999765441 12 233555666777776654433
No 23
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=20.55 E-value=52 Score=22.40 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=29.1
Q ss_pred cceeeccccccHHHHHHHHhhHhHhhHHHHHHHh
Q 017724 286 GAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGL 319 (367)
Q Consensus 286 GTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fal 319 (367)
|++|...++.+..|-|.+|+.-|+++.--+|...
T Consensus 1 ~~~Vs~eeF~~L~rRVlqlE~~l~gI~S~idav~ 34 (39)
T 3te3_A 1 GGWVSGEEFYMLTRRVLQLETVLEGVVSQIDAVG 34 (39)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999988887653
No 24
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=20.51 E-value=3e+02 Score=21.87 Aligned_cols=42 Identities=7% Similarity=-0.041 Sum_probs=28.4
Q ss_pred cHHHHHHHHhhHhHhhHHHHHHHhhCC--CCcccHHHHHHHHHh
Q 017724 296 TIDRLVARLCTAIEGDKQLVRLGLGGG--KEKHSIQEVVKQLRK 337 (367)
Q Consensus 296 TIsrLV~RL~deIE~~~~~v~fale~~--~~~~~vkevv~elkk 337 (367)
.+..-+..|++|++.|.+..+.+-+.. .....++.-++++|+
T Consensus 23 gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrd 66 (115)
T 3qfl_A 23 GVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRE 66 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 356778899999999999998886542 112345555555554
Done!