Query 017724
Match_columns 367
No_of_seqs 97 out of 99
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 03:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017724.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017724hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fjca1 a.25.1.1 (A:27-177) Do 22.1 1.5E+02 0.011 22.2 10.4 30 193-222 38-67 (151)
2 d1o9ra_ a.25.1.1 (A:) Dodecame 21.2 1.7E+02 0.012 22.4 10.1 29 193-221 47-75 (162)
3 d1ixca1 a.4.5.37 (A:1-89) LysR 21.0 55 0.004 23.2 4.4 52 308-364 3-54 (89)
4 d2esna1 a.4.5.37 (A:3-91) Prob 19.4 47 0.0035 23.5 3.8 52 308-364 8-59 (89)
5 d2htna1 a.25.1.1 (A:1-158) Bac 19.3 95 0.0069 23.5 5.9 48 303-350 93-142 (158)
6 d1st6a3 a.24.9.1 (A:253-371) V 19.2 1.2E+02 0.0085 23.4 6.3 55 294-348 62-117 (119)
7 d1u5pa2 a.7.1.1 (A:1772-1872) 18.8 1.4E+02 0.0098 20.3 6.5 37 179-215 64-100 (101)
8 d2a0ba_ a.24.10.1 (A:) Aerobic 17.8 1.1E+02 0.0077 22.1 5.7 59 247-319 56-114 (118)
9 d1wa8b1 a.25.3.1 (B:602-695) E 17.8 1.5E+02 0.011 20.6 7.1 62 297-358 17-80 (94)
10 d1n1qa_ a.25.1.1 (A:) Dodecame 17.0 2E+02 0.014 21.5 10.2 30 193-222 38-67 (149)
No 1
>d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]}
Probab=22.11 E-value=1.5e+02 Score=22.22 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=25.4
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Q 017724 193 KFHEMHRCFSDLKQKLDKNLQKSRSRVCFL 222 (367)
Q Consensus 193 ~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~i 222 (367)
.|..+|.-+..+-+.+...-+++..|++.+
T Consensus 38 ~F~~lH~~f~~~y~~~~~~~D~iAERi~~L 67 (151)
T d2fjca1 38 EFKQVHELLEEYYVSVTEAFDTIAERLLQL 67 (151)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688889888888888888899998887744
No 2
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]}
Probab=21.22 E-value=1.7e+02 Score=22.38 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.3
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Q 017724 193 KFHEMHRCFSDLKQKLDKNLQKSRSRVCF 221 (367)
Q Consensus 193 ~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~ 221 (367)
+|..+|..+..+-..+...-+.+..|++.
T Consensus 47 ~F~~lH~~~~~~~~~~~~~~D~iAERi~~ 75 (162)
T d1o9ra_ 47 QFIAVHELLDTFRTQLDNHGDTIAERVVQ 75 (162)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 68889988888888888888888888764
No 3
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=21.04 E-value=55 Score=23.22 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=35.8
Q ss_pred hHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccccCc
Q 017724 308 IEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQG 364 (367)
Q Consensus 308 IE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~~~~ 364 (367)
+++++..+..+ +.+ ++..+.+++...++...+.|..||+.+..=+-.=.++|
T Consensus 3 l~~L~~f~~v~-e~g----s~~~AA~~L~isq~avs~~i~~LE~~lg~~Lf~R~~~~ 54 (89)
T d1ixca1 3 FRQLKYFIAVA-EAG----NMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRG 54 (89)
T ss_dssp HHHHHHHHHHH-HHS----SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC-----
T ss_pred HHHHHHHHHHH-HhC----CHHHHHHHhCCChHHHHHHHHHHHhcCCceeeEecCCc
Confidence 45566666555 333 38899999999999999999999999865443333443
No 4
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.40 E-value=47 Score=23.53 Aligned_cols=52 Identities=12% Similarity=-0.003 Sum_probs=36.7
Q ss_pred hHhhHHHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhhccccCc
Q 017724 308 IEGDKQLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFRPSFGQG 364 (367)
Q Consensus 308 IE~~~~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~tI~~~~ 364 (367)
+.+++..+.++- .+ ++..+.+++...++.+.++|.+||+.+..=+-.-.++|
T Consensus 8 l~~L~~f~~v~~-~g----s~t~AA~~l~isq~avs~~l~~lE~~~g~~Lf~R~~~~ 59 (89)
T d2esna1 8 LNLLLVFDALYR-HR----NVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNR 59 (89)
T ss_dssp TTHHHHHHHHHH-HS----SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEETTE
T ss_pred HHHHHHHHHHHH-hC----CHHHHHHHHCCCCcHhhHHHHHHHhcCCceeEEECCCc
Confidence 344555555552 22 48899999999999999999999999875333333333
No 5
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=19.31 E-value=95 Score=23.48 Aligned_cols=48 Identities=4% Similarity=-0.013 Sum_probs=30.5
Q ss_pred HHhhHhHhhHHHHHHHhhCCCC--cccHHHHHHHHHhhhhhHHHhHHHHH
Q 017724 303 RLCTAIEGDKQLVRLGLGGGKE--KHSIQEVVKQLRKNQPNFASLLKDLE 350 (367)
Q Consensus 303 RL~deIE~~~~~v~fale~~~~--~~~vkevv~elkk~~~~f~~qleELe 350 (367)
.-...++..+..++.|.+.++. ...+..++++-.++...|.+.|+.++
T Consensus 93 ~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eee~h~~~l~~~L~~~~ 142 (158)
T d2htna1 93 LELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466677777777765432 23555677777777777776666553
No 6
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.23 E-value=1.2e+02 Score=23.35 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=39.6
Q ss_pred cccHHHHHHHHhhHhHhhH-HHHHHHhhCCCCcccHHHHHHHHHhhhhhHHHhHHH
Q 017724 294 LDTIDRLVARLCTAIEGDK-QLVRLGLGGGKEKHSIQEVVKQLRKNQPNFASLLKD 348 (367)
Q Consensus 294 lDTIsrLV~RL~deIE~~~-~~v~fale~~~~~~~vkevv~elkk~~~~f~~qleE 348 (367)
...-+.-+-++.+||++|- ++++++-+..++-+.-+...++|..+...+...+.+
T Consensus 62 ~~~~r~~Il~~c~ei~~lt~qLadLr~~G~G~sPeA~~lA~qi~~kL~~L~~~v~~ 117 (119)
T d1st6a3 62 AGKERREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVEN 117 (119)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667778888888884 567777666566556668889988888777776654
No 7
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=18.75 E-value=1.4e+02 Score=20.34 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=23.7
Q ss_pred hhhcCCCCCCcchhhHHHHHhhhHHHHHHHHHHHHHH
Q 017724 179 FDSLHNPFHSPDSRKFHEMHRCFSDLKQKLDKNLQKS 215 (367)
Q Consensus 179 F~~~~NPFs~~~~~~Fq~v~~~~~~Ll~kL~s~k~K~ 215 (367)
+...++|-+..-......+.++...|...++.|+.++
T Consensus 64 l~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~L 100 (101)
T d1u5pa2 64 LSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 100 (101)
T ss_dssp HHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444333344667788888888888888777665
No 8
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=17.83 E-value=1.1e+02 Score=22.09 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhcceeeccccccHHHHHHHHhhHhHhhHHHHHHHh
Q 017724 247 VATHAIFAIFAGPLCTACFPCALTKKELANAAQLDAARKGAYVLNKCLDTIDRLVARLCTAIEGDKQLVRLGL 319 (367)
Q Consensus 247 ~Aahalaglva~P~~~~~~~~~~kkke~al~~QldaaakGTYIl~kDlDTIsrLV~RL~deIE~~~~~v~fal 319 (367)
-.+|.+-|..+. ++. .....+..+++.++ ...|.+.++.++..|..+++...+-.+-++
T Consensus 56 ~~aH~LKgsa~~-~G~--------~~l~~~~~~lE~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l 114 (118)
T d2a0ba_ 56 EEGHKIKGAAGS-VGL--------RHLQQLGQQIQSPD-----LPAWEDNVGEWIEEMKEEWRHDVEVLKAWV 114 (118)
T ss_dssp HHHHHHHHHHHH-TTC--------HHHHHHHHHHTCTT-----STTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCH--------HHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777665542 121 12334566666543 457889999999999999998887776655
No 9
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.78 E-value=1.5e+02 Score=20.57 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=41.8
Q ss_pred HHHHHHHHhhHhHhhHHHHHHHhh--CCCCcccHHHHHHHHHhhhhhHHHhHHHHHHHHhhhhh
Q 017724 297 IDRLVARLCTAIEGDKQLVRLGLG--GGKEKHSIQEVVKQLRKNQPNFASLLKDLEEHICLCFR 358 (367)
Q Consensus 297 IsrLV~RL~deIE~~~~~v~fale--~~~~~~~vkevv~elkk~~~~f~~qleELeEhv~lCf~ 358 (367)
|+.-..+|+.+++.+...++--.. .|.....-..+..+.......+.+.|.++.+++.-.-.
T Consensus 17 i~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L~~i~~~l~~~~~ 80 (94)
T d1wa8b1 17 IQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544332 23444556689999999999999999999999875543
No 10
>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus brevis, Dps [TaxId: 1393]}
Probab=16.99 E-value=2e+02 Score=21.48 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=26.2
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Q 017724 193 KFHEMHRCFSDLKQKLDKNLQKSRSRVCFL 222 (367)
Q Consensus 193 ~Fq~v~~~~~~Ll~kL~s~k~K~~rKlk~i 222 (367)
+|..+|.-+..+-..+...-+++..|++.+
T Consensus 38 ~F~~lH~~~ee~y~e~~~~~D~iAERi~~L 67 (149)
T d1n1qa_ 38 NFFTLHEKFEELYTEASGHIDTLAERVLSI 67 (149)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 689999999999999999999999987754
Done!