BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017726
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 172/354 (48%), Gaps = 7/354 (1%)
Query: 3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTP 62
Y K LF GPV +V+ M +RS + +E +++ + G
Sbjct: 14 YEMVKPKYKLFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEV 73
Query: 63 FLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122
L+P++GTG E+++ N +S G +++ +IG F + + + V+E + G+ K
Sbjct: 74 LLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVK 133
Query: 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA 182
+ L L + ++A+ I +NET+TGV N L ++ K+ E H L VD VS++
Sbjct: 134 PEDLDDALRKNP--DVEAVTITYNETSTGVLNPLPELAKVAKE--HDKLVFVDAVSAMGG 189
Query: 183 IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242
D + D+WG+DV + SQKA +P G+ I S + LE ++ +FD Y+K+
Sbjct: 190 ADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLK 249
Query: 243 LGTFWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
P TP + ++G+ AL +I + G E +E + + K R V GL + +
Sbjct: 250 EKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGL-DILAEP 308
Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
S T+TAV+ P I E V A ++ L G V K FRIGH+G++
Sbjct: 309 GHESPTITAVLTPPGIKGDE-VYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMK 361
>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase
(Alr1004) From Nostoc Sp. At 1.70 A Resolution
Length = 393
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 167/343 (48%), Gaps = 8/343 (2%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP + V++A N + + PA AL + ++ +++T + + TGT
Sbjct: 37 LLGPGPSNAHPSVLQAXNVSPVGHLDPAFLALXDEIQSLLRYVWQTENPLTIAVSGTGTA 96
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
A E+ + N + PGD ++ + G F +D R +V + WGE L+ L + L
Sbjct: 97 AXEATIANAVEPGDVVLIGVAGYFGNRLVDXAGRYGADVRTISKPWGEVFSLEELRTAL- 155
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
H + +VH ET+TG L V +L E+ L LVD V+S+ + +D WG
Sbjct: 156 --ETHRPAILALVHAETSTGARQPLEGVGELCREFG--TLLLVDTVTSLGGVPIFLDAWG 211
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALE--ASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249
+D+A + SQK L G S +A+E + K + D K++ + +
Sbjct: 212 VDLAYSCSQKGLGCSPGASPFTXSSRAIEKLQRRRTKVANWYLDXNLLGKYWGSERVYHH 271
Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
T I L Y LR AL LI +EGL N +RH++ + +E GL +K E+ T+T
Sbjct: 272 TAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK-EYRLPTLT 330
Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
V +P ++ + RR +N+ +G GL ++AGKV+R+G G
Sbjct: 331 TVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLXG 373
>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUF|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUI|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUI|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUU|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
pdb|2HUU|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
Length = 393
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 164/348 (47%), Gaps = 13/348 (3%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP + P +V+ AM+R + P + + E ++ +F+T + F + +G G
Sbjct: 22 LMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHG 81
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
E+ L N L GD I+ G + D R +V VV+S G+ LD + L
Sbjct: 82 GMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDAL- 140
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
H + + +++TGV L V L ++H L +VD V+S+ MD W
Sbjct: 141 --LIHKPSVLFLTQGDSSTGVLQGLEGVGALC--HQHNCLLIVDTVASLGGAPMFMDRWE 196
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VRVFFDWK-----DYIKFYNLGT 245
ID TGSQ L P G+ V S +A+E K + V+V++ W DY +
Sbjct: 197 IDAMYTGSQXVLGAPPGITPVSFSHRAVERYKRRNTKVKVYY-WDMSLVGDYWGCFGRPR 255
Query: 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
+ +T S LLYGLR A+ + EEGL +I RH K ++ G + ++ S
Sbjct: 256 IYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLS 315
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
TVT + VP ++ + + A + Y + + GL AG+VFRIG +G
Sbjct: 316 -TVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQ 362
>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
pdb|3ISL|B Chain B, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
Length = 416
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 169/368 (45%), Gaps = 38/368 (10%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
+ PGPV + +V+R M+ PA + +E ++++F+T + + I T
Sbjct: 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
E+ L + + P D ++ + G+F L + +R NV ++E +WG + + ++
Sbjct: 74 GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIK 133
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
K + +VH ET+TG + L + + ALF+VD V++I + ++DEW
Sbjct: 134 KVKP---KIVAMVHGETSTGRIHPLKAIGEAC--RTEDALFIVDAVATIGGCEVKVDEWK 188
Query: 192 IDVALTGSQKALSLPTGMGI---------VCASPKALEASKTAKSVRVFFDW-----KDY 237
ID A+ G+QK LS+P+GM V A+ K +E ++ R +Y
Sbjct: 189 IDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNY 248
Query: 238 IKFYNLGTFWP------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291
L +W +T + +LY LR + L+ EEGLE ERHR A ++A
Sbjct: 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA 308
Query: 292 WGLKNCTQKEEWFSD------TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKV 345
GL+ F D VT V +P I+ + ++ + + +AGK+
Sbjct: 309 MGLR-------LFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKI 361
Query: 346 FRIGHLGH 353
+RIG +G+
Sbjct: 362 WRIGTMGY 369
>pdb|1J04|A Chain A, Structural Mechanism Of Enzyme Mistargeting In Hereditary
Kidney Stone Disease In Vitro
Length = 392
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 163/350 (46%), Gaps = 18/350 (5%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP ++P +++ A S + + + E I+ +F+T + +I +G
Sbjct: 25 LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC 84
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
A E+AL N L PGD SFL+G + W +D +R+ V + D G L +
Sbjct: 85 ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVE 140
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
LA H + + H E++TGV L R+L Y+ L LVD V+S+ M
Sbjct: 141 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFRELCHRYK--CLLLVDSVASLGGTPLYM 195
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
D GID+ +GSQ AL+ P G ++ S KA + S+ K + D K F+
Sbjct: 196 DRQGIDILYSGSQXALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255
Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
+ +T + LY LR +L LI E+GLEN +HR ++A GL+ +
Sbjct: 256 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPA 315
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
TVT V VP+ + +IV +++ + GL GKV RIG LG
Sbjct: 316 LRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 169/354 (47%), Gaps = 22/354 (6%)
Query: 15 PGPVHIPDQVIRAM------NRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
PGP + +V+ AM N + E +R+ + + ++ IF+T + + +
Sbjct: 24 PGPSNCSKRVLTAMTNTVLSNFHAELFRT------MDEVKDGLRYIFQTENRATMCVSGS 77
Query: 69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
E+ L+N L GDR++ + G ++ ++ +R +V +E L+ LA
Sbjct: 78 AHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLAR 137
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
A H K + + H ++++G+ L V ++ ++H L +VD V+S+C + F MD
Sbjct: 138 ---AIELHQPKCLFLTHGDSSSGLLQPLEGVGQIC--HQHDCLLIVDAVASLCGVPFYMD 192
Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK-----DYIKFYNL 243
+W ID TG+QK L P G+ + SPKAL+ + ++ F W +Y Y+
Sbjct: 193 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 252
Query: 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303
+ +T + L++ LR AL I EEGLEN I+R + + GL +
Sbjct: 253 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRH 312
Query: 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357
TVT +++P ++ ++ + A ++L + GL GK +R+G +G + V
Sbjct: 313 RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTV 366
>pdb|1H0C|A Chain A, The Crystal Structure Of Human Alanine:glyoxylate
Aminotransferase
Length = 392
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 163/350 (46%), Gaps = 18/350 (5%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP ++P +++ A S + + + E I+ +F+T + +I +G
Sbjct: 25 LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC 84
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
A E+AL N L PGD SFL+G + W +D +R+ V + D G L +
Sbjct: 85 ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVE 140
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
LA H + + H E++TGV L +L Y+ L LVD V+S+ M
Sbjct: 141 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGTPLYM 195
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
D GID+ +GSQKAL+ P G ++ S KA + S+ K + D K F+
Sbjct: 196 DRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255
Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
+ +T + LY LR +L LI E+GLEN +HR ++A GL+ +
Sbjct: 256 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPA 315
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
TVT V VP+ + +IV +++ + GL GKV RIG LG
Sbjct: 316 LRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365
>pdb|3R9A|A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|C Chain C, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 394
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 162/350 (46%), Gaps = 18/350 (5%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP ++P +++ A S + + + E I+ +F+T + +I +G
Sbjct: 27 LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC 86
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
A E+AL N L PGD SFL+G + W +D +R+ V + D G L +
Sbjct: 87 ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVE 142
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
LA H + + H E++TGV L +L Y+ L LVD V+S+ M
Sbjct: 143 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGTPLYM 197
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
D GID+ +GSQ AL+ P G ++ S KA + S+ K + D K F+
Sbjct: 198 DRQGIDILYSGSQXALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 257
Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
+ +T + LY LR +L LI E+GLEN +HR ++A GL+ +
Sbjct: 258 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPA 317
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
TVT V VP+ + +IV +++ + GL GKV RIG LG
Sbjct: 318 LRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 367
>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGX|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGW|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
pdb|3KGW|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
Length = 393
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 160/351 (45%), Gaps = 18/351 (5%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP ++ +V+ A + + + + + + + I+ +F+T + ++ +G
Sbjct: 26 LLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHC 85
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
A E+AL N L PGD ++ G + + + R+ V + GE L + LA
Sbjct: 86 AMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLA 145
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
H + +VH E++TGV L +L Y+ L LVD V+S+ + MD+ G
Sbjct: 146 Q---HKPVLLFLVHGESSTGVVQPLDGFGELCHRYQ--CLLLVDSVASLGGVPIYMDQQG 200
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP--- 248
ID+ + SQK L+ P G+ ++ + KA + K+ V F Y L W
Sbjct: 201 IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSF----YTDITYLAKLWGCEG 256
Query: 249 ------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
+T + LY LR +L LI E+GLEN RHR ++ GLK + E
Sbjct: 257 ETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPE 316
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
T+T V VP+ N +IV +++ + GL +V RIG LG+
Sbjct: 317 IRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 367
>pdb|3ZRP|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRP|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
Length = 384
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 171/347 (49%), Gaps = 23/347 (6%)
Query: 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWE 74
GP I + V+ A NN + S L+ ++ + + P +IP GT A E
Sbjct: 9 GPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME 68
Query: 75 SALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT 134
S +T+ L P D+I+ G F W +R NV V+ G+ K + ++
Sbjct: 69 S-VTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSE 127
Query: 135 AHTIKAICIVHNETATGV----TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
K + + H ET+TGV + ++K+RK ++ L +VDGVSS+ A + + +EW
Sbjct: 128 ---YKLVALTHVETSTGVREPVKDVINKIRKYVE------LIVVDGVSSVGAEEVKAEEW 178
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF----DWKDYIKFYNLGTF 246
+DV LT SQKAL G+G++ SPKAL + S+ ++ +W ++ G
Sbjct: 179 NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA 238
Query: 247 WPY-TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
+ TP + ++ L A LI +EG+EN I+RH + A R +EA GL+ ++ E +S
Sbjct: 239 AYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYS 298
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
+TVT VI+ + + V + G++ A K FRIGH+G
Sbjct: 299 NTVTGVIL--KVADPQKVLAGTVNEGVEFAPGVHP-AFKYFRIGHMG 342
>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|B Chain B, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|C Chain C, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|D Chain D, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|E Chain E, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|F Chain F, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|G Chain G, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|H Chain H, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|J Chain J, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|K Chain K, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|L Chain L, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|M Chain M, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|O Chain O, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|P Chain P, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|R Chain R, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|S Chain S, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
Length = 411
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 160/367 (43%), Gaps = 28/367 (7%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
P L PGP++ +V+RAM+ PA+ ++ + +F+T + L+
Sbjct: 11 PPSRLLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVD 70
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
T E+ L + + PGD+++ + G+F L + +R V +E WGE V
Sbjct: 71 GTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGE-----VF 125
Query: 127 ASKLAADTAHTIKA--ICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
D I+ + V +T+T + L+++ ++ R+ ALF D +S+
Sbjct: 126 TPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEIC--RRYDALFYTDATASLGGNP 183
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV---------RVFFDWK 235
D WG+D G Q L P+G + S + EA + K V R +
Sbjct: 184 LETDVWGLDAVSAGMQXCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243
Query: 236 DYIKFYNLGTFWPY---------TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR 286
Y +++LG Y T + L+G R LI +EGL+ I RH+ G A
Sbjct: 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALV 303
Query: 287 LAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF 346
++A GL+ + ++ V V++P IN + + + + + +G + GKV+
Sbjct: 304 KGIQAMGLETFGDLKHKMNN-VLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVW 362
Query: 347 RIGHLGH 353
RIG +G+
Sbjct: 363 RIGTMGY 369
>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9U|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9V|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9V|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9W|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9W|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9X|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
pdb|2Z9X|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
Length = 392
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 164/357 (45%), Gaps = 13/357 (3%)
Query: 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES 75
GPV+ +V+R + R PA L + +++ +K + S P ++ E+
Sbjct: 16 GPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRL-SNKPVILHGEPVLGLEA 74
Query: 76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA 135
A + +SP D +++ G + + +R + ++ +E + E +A L A
Sbjct: 75 AAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPE 134
Query: 136 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVA 195
T+ ++C H++T +G N + + L+ H A +VD VSS + ++ D+
Sbjct: 135 ITVVSVC--HHDTPSGTINPIDAIGALVSA--HGAYLIVDAVSSFGGMKTHPEDCKADIY 190
Query: 196 LTGSQKALSLPTGMGIVCASPKA---LEASKTAK--SVRVFFDWKDYIKFYNLGTFWPYT 250
+TG K L P G+ ++ S +A ++A+ A S+ DW++ ++ +P+T
Sbjct: 191 VTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWEN---AWSRDKPFPFT 247
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
PS+ + GL ALDL EG E V RH KA R V A GL + S T TA
Sbjct: 248 PSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTA 307
Query: 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQL 367
V P ++ + + A RY + G + GK+ RIGH+G + ++ L L
Sbjct: 308 VRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTAL 364
>pdb|2BKW|A Chain A, Yeast Alanine:glyoxylate Aminotransferase Yfl030w
Length = 385
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 169/358 (47%), Gaps = 23/358 (6%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT---PFLIPTT 68
L +PGP+ + V +A++ + + SP ++ + +L++ + +FK+ + + PF++ +
Sbjct: 8 LLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 67
Query: 69 GTGAWESALTNTL---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLD 124
GT W+ +N + +P ++ G FS + D + VDVV GE L+
Sbjct: 68 GTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLE 127
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
++ KL+ ++ A+ + H +T+T V ++L + + + + F+VD V SI +
Sbjct: 128 LITEKLSQNS---YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE 184
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPK----ALEASKTAKSVRVFFD----WKD 236
F DEWG+D ALT SQ A+ P G+ I S + AL SK V +F W
Sbjct: 185 FEFDEWGVDFALTASQXAIGAPAGLSISLCSSRFXDYALNDSKNGH-VHGYFSSLRRWTP 243
Query: 237 YIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
+ Y G + TP +QL+ L AL I EEGL + HR + ++ GL+
Sbjct: 244 IXENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREXSDWFKDSL-VNGLQ 302
Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG-KVFRIGHLG 352
T + S+ + ++ V + + + + G++K G K RIGH G
Sbjct: 303 -LTSVSRYPSNXSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHXG 359
>pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRI|B Chain B, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRR|A Chain A, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
pdb|2YRR|B Chain B, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
Length = 353
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 22/347 (6%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP IP++V +A+ R + P V + + + E + +F G + G+G
Sbjct: 3 LLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGA-LVAALAGSG 61
Query: 72 A--WESALTNTLSPGDR--IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLA 127
+ E+ L N DR ++ + G FS + + +V++ GE + +A
Sbjct: 62 SLGMEAGLANL----DRGPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVA 117
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
L + + +VH ET+TGV N + L E ALF +D V+++ + F M
Sbjct: 118 RAL---KRRRYRMVALVHGETSTGVLNPAEAIGALAKEAG--ALFFLDAVTTLGMLPFSM 172
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV-FFDWKDYIKFYNLGTF 246
G+D A TGSQK LS P G+ + AS LEA K R + D + + G +
Sbjct: 173 RAMGVDYAFTGSQKCLSAPPGLAPIAAS---LEARKAFTGKRGWYLDLARVAEHWERGGY 229
Query: 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306
TP + L Y L ALDL+ EEG+ R R + ++A G + +
Sbjct: 230 HHTTP-VLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPL--P 286
Query: 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
TV V P +++ +V RA +++ G+ G+V R+G +G
Sbjct: 287 TVLVVRPPEGVDADRLV-RALYAEGVAVAGGIGPTRGQVLRLGLMGE 332
>pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
pdb|1IUG|B Chain B, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
Length = 352
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 161/354 (45%), Gaps = 43/354 (12%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGPV + + + A+ R +R+ A + +++ F+T G ++ +GT
Sbjct: 4 LLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRT-EGEVLILTGSGTL 62
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
A E+ + N +PG+R++ + G+FS + + V+ ++ +G+ + + +A +
Sbjct: 63 AMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAKEGY 122
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
A + +VH+ET+TG +L + + E L D V+S+ + ++ G
Sbjct: 123 A-------GLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMG 175
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG-TFWPYT 250
+D A +GSQ L P G+G V SP+ALE K + D +K G + W T
Sbjct: 176 VDAAASGSQXGLMCPPGLGFVALSPRALE---RLKPRGYYLDLARELKAQKEGESAW--T 230
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW------------GLKNCT 298
P+I L+ + A L+ + +E H LA++AW GL+
Sbjct: 231 PAINLVLAVAAVLEEVLPR-----LEEH--------LALKAWQNALLYGVGEEGGLRPVP 277
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
++ FS V A +P + + V+ A+ + + G + GKVFR+ +G
Sbjct: 278 KR---FSPAVAAFYLPEGVPYAR-VKEAFAQRGAVIAGGQGPLKGKVFRLSLMG 327
>pdb|3F0H|A Chain A, Crystal Structure Of Aminotransferase (Rer070207000802)
From Eubacterium Rectale At 1.70 A Resolution
Length = 376
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 151/352 (42%), Gaps = 29/352 (8%)
Query: 13 FVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIK---KIFKTTSGTPFLIPT-T 68
F GPV ++V RA+ Y + T LE+ K + K G+ + T +
Sbjct: 23 FTVGPVXSSEEV-RAIGAEQVPYFR--TTEFSSTXLENEKFXLEYAKAPEGSKAVFXTCS 79
Query: 69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
TG+ E+ + N + D+++ G F ++ Q + V G KL
Sbjct: 80 STGSXEAVVXNCFTKKDKVLVIDGGSFGHRFV--QLCEIHEIPYVALKLEHGKKL--TKE 135
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
KL + + +ET+T V + + + ++ F+ D VS+ A F +
Sbjct: 136 KLYEYDNQNFTGLLVNVDETSTAVLYDTXXIGEFCK--KNNXFFVCDCVSAFLADPFNXN 193
Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248
E G DV +TGSQ L+ P G+ ++ +P+ +E + +K +FD KD +K G P
Sbjct: 194 ECGADVXITGSQXVLACPPGISVIVLAPRGVERVEKSKVRTXYFDLKDALKNQERGQ-TP 252
Query: 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK------EE 302
+TP++ +L + L I + G + + R+A +A + + E
Sbjct: 253 FTPAVGILLQINERLKEIKKHGGAD--------AEVARIASQAADFRAKIKDLPFELVSE 304
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354
++ VT+V P+ N+ +I + Y + + + +FR+GH+G L
Sbjct: 305 SPANGVTSVH-PTTANAYDIFLKLKDEYGIWICPNGGEXKDTIFRVGHIGAL 355
>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|B Chain B, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|C Chain C, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|D Chain D, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|E Chain E, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|F Chain F, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
Length = 366
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 143/357 (40%), Gaps = 31/357 (8%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGT 70
L PGP+ V A ++ + + + + + + + + G T L+ +G+
Sbjct: 7 LLTPGPLTTSRTVKEAXLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGS 66
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
A E+ L + L P D+++ G + ++ D GE A+ DV A
Sbjct: 67 YAVEAVLGSALGPQDKVLIVSNGAYGARXVEXAGLXGIAHHAY--DCGEVARPDVQAIDA 124
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
+ TI I VH+ET TG N + +V L +R+ ++VD SS I +
Sbjct: 125 ILNADPTISHIAXVHSETTTGXLNPIDEVGAL--AHRYGKTYIVDAXSSFGGIPXDIAAL 182
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASK---TAKSVRVFFDWKDYIKFYNLGTFW 247
ID ++ + K + G V A + L A K + S+ ++ W+ N G W
Sbjct: 183 HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWR--CXEDNHGK-W 239
Query: 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV---EAWGLKNCTQKEEWF 304
+T + AL + +EG V RH+R + R V A G N +E
Sbjct: 240 RFTSPTHTVLAFAQALKELAKEG--GVAARHQRYQQNQRSLVAGXRALGF-NTLLDDELH 296
Query: 305 SDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKV-----FRIGHLGHL 354
S +TA P SE RR ++ G GKV FRIG++G +
Sbjct: 297 SPIITAFYSPEDPQYRFSEFYRRLKEQ-------GFVIYPGKVSQSDCFRIGNIGEV 346
>pdb|3FFR|A Chain A, Crystal Structure Of A Phosphoserine Aminotransferase Serc
(chu_0995) From Cytophaga Hutchinsonii Atcc 33406 At
1.75 A Resolution
Length = 362
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 23/220 (10%)
Query: 13 FVPGPVHIPDQV----IRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
F PGP + V I A++ +RS + KT +++K + + S L
Sbjct: 8 FTPGPSELYPTVRQHXITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFL 67
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG---AKL 123
+ T WE + N + + + G FS + + L E+ +G+G A +
Sbjct: 68 ASATEIWERIIQNCVE--KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADI 125
Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
V A + IC+ HNET++GV+ + + D+ + AL VD VSS+
Sbjct: 126 TVPADA---------EIICLTHNETSSGVSXPVEDINTFRDKNKD-ALIFVDAVSSLPYP 175
Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223
F D ID Q LP G+G+ + + +E SK
Sbjct: 176 KF--DWTKIDSVFFSVQXCFGLPAGLGVWILNDRVIEKSK 213
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 18/204 (8%)
Query: 79 NTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH 136
N L GD II+ ++ S L W + + V+ D E L+ + L+ T
Sbjct: 113 NNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKT-- 170
Query: 137 TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVA- 195
K + +VH G N ++ +L ++ A LVD S A + +D ID
Sbjct: 171 --KLVTVVHISNTLGCVNPAEEIAQL--AHQAGAKVLVDACQS--APHYPLDVQLIDCDW 224
Query: 196 LTGSQKALSLPTGMGIVCASPKALEA-----SKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
L S + PTG+G + + LEA VFFD + + F T
Sbjct: 225 LVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPH--KFEAGT 282
Query: 251 PSIQLLYGLRAALDLIFEEGLENV 274
P+I L AA+D + + G+EN+
Sbjct: 283 PAIAEAIALGAAVDYLTDLGMENI 306
>pdb|3KE3|A Chain A, Crystal Structure Of Putative Serine-Pyruvate
Aminotransferase (Yp_263484.1) From Psychrobacter
Arcticum 273-4 At 2.20 A Resolution
Length = 379
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 32/289 (11%)
Query: 26 RAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85
RA+N + S A + LL ++K ++ + +IP +GT E A+ L+ +
Sbjct: 24 RALN-----HXSKAFQEVXNDLLSNLKTVYNAEAAV--IIPGSGTYGXE-AVARQLTIDE 75
Query: 86 RIISFLIGQFSLLWIDQQQRLNF--NVDVVESDWGEGAK---------LDVLASKLAADT 134
+ G FS W ++ F + V+ ++ E + ++ +K+ D
Sbjct: 76 DCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDK 135
Query: 135 AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP--ALFLVDGVSSICA-IDFRMDEWG 191
+ + A H ET++G+ + + K L E H L ++D ++S C +D + E G
Sbjct: 136 SAIVYA---PHVETSSGIILSEEYI-KALSEAVHSVGGLLVIDCIASGCVWLDXK--ELG 189
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI----KFYNLGTFW 247
IDV ++ Q S G+V S A++ ++ +S D K ++ + N G +
Sbjct: 190 IDVLISAPQXGWSSTPCAGLVXLSAAAIKKVESTESNCFSLDLKQWLTIXRAYENGGHAY 249
Query: 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN 296
T L R A+ E G + + + LG R + G+++
Sbjct: 250 HATXPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIES 298
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 21/154 (13%)
Query: 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198
+ + I H G N L+++ L ++H A LVDG ++ + D +
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITL--AHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS 223
Query: 199 SQKALSLPTGMGIVCASPKALEAS---KTAKSVRVFFDWKDYIKFYNLGTFW---PY--- 249
K L PTG+GI+ L+ + S+ + GT W P+
Sbjct: 224 GHK-LYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSE-------GTTWTKAPWRFE 275
Query: 250 --TPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
TP+ + GL AAL+ + GL N+ E + L
Sbjct: 276 AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNL 309
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198
+ + I H G N L+++ L ++H A LVDG ++ + D +
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITL--AHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS 223
Query: 199 SQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK---DYIKFYNL--GTFW---PY- 249
K L PTG+GI+ L+ W+ I +L GT W P+
Sbjct: 224 GHK-LYGPTGIGILYVKEALLQEMPP---------WEGGGSMIATVSLSEGTTWTKAPWR 273
Query: 250 ----TPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
TP+ + GL AAL+ + GL N+ E + L
Sbjct: 274 FEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNL 309
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 21/154 (13%)
Query: 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198
+ + I H G N L+++ L ++H A LVDG ++ + D +
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITL--AHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS 223
Query: 199 SQKALSLPTGMGIVCASPKALEAS---KTAKSVRVFFDWKDYIKFYNLGTFW---PY--- 249
K L PTG+GI+ L+ + S+ + GT W P+
Sbjct: 224 GHK-LYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSE-------GTTWTKAPWRFE 275
Query: 250 --TPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
TP+ + GL AAL+ + GL N+ E + L
Sbjct: 276 AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNL 309
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 21/154 (13%)
Query: 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198
+ + I H G N L+++ L ++H A LVDG ++ + D +
Sbjct: 168 RLLAITHVSNVLGTENPLAEMITL--AHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS 225
Query: 199 SQKALSLPTGMGIVCASPKALEAS---KTAKSVRVFFDWKDYIKFYNLGTFW---PY--- 249
K L PTG+GI+ L+ + S+ + GT W P+
Sbjct: 226 GHK-LYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSE-------GTTWTKAPWRFE 277
Query: 250 --TPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
TP+ + GL AAL+ + GL N+ E + L
Sbjct: 278 AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNL 311
>pdb|2Z1T|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
pdb|2Z1U|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
In Complex With Atp
Length = 343
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 83 PGDRI-ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI 141
PGD I IS +G L + Q+Q LNF DV + A L+ + KL + + I
Sbjct: 164 PGDAILISGSMGDHGLTILSQRQGLNFAADVCS----DSASLNRVVEKLVLE----VGDI 215
Query: 142 CIVHNETATGVTNNLSKV 159
++ + T G+ L+++
Sbjct: 216 HVLRDPTRGGLATTLNEI 233
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWI 100
PA K+ + +++ L TGA L + + PGD +IS L + L+
Sbjct: 66 PAFKKS----VSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVIS-LYPTYQQLY- 119
Query: 101 DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160
D + L VD+ + + G D+ KL T K ICI + TG + + +
Sbjct: 120 DIPKSLGAEVDLWQIEEENGWLPDL--EKLRQLIRPTTKXICINNANNPTGAVXDRTYLE 177
Query: 161 KLLD 164
+L++
Sbjct: 178 ELVE 181
>pdb|2FYF|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|2FYF|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
Length = 398
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 21/188 (11%)
Query: 35 YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGA-WESALTNTLSPGDRIISFLIG 93
+R V L + + ++F G ++ G A W++A + R + G
Sbjct: 71 HRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID--KRSLHLTYG 128
Query: 94 QFSLLWIDQQQRLNFNVD--VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG 151
+FS + + F + ++ SD G + T ++ I HNET+TG
Sbjct: 129 EFSAKFASAVSKNPFVGEPIIITSDPGSAPE---------PQTDPSVDVIAWAHNETSTG 179
Query: 152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGI 211
V VR+ E AL ++D S + + E D QK + G+ +
Sbjct: 180 VA---VAVRR--PEGSDDALVVIDATSGAGGLPVDIAE--TDAYYFAPQKNFASDGGLWL 232
Query: 212 VCASPKAL 219
SP AL
Sbjct: 233 AIMSPAAL 240
>pdb|2ZIU|B Chain B, Crystal Structure Of The Mus81-Eme1 Complex
pdb|2ZIX|B Chain B, Crystal Structure Of The Mus81-Eme1 Complex
Length = 341
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH 168
+ESDW G K+D+ LA I+ + V E A+ V N + L+ Y+
Sbjct: 231 CLESDWAGGVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQ 287
>pdb|2ZIW|B Chain B, Crystal Structure Of The Mus81-Eme1 Complex
Length = 341
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH 168
+ESDW G K+D+ LA I+ + V E A+ V N + L+ Y+
Sbjct: 231 CLESDWAGGVKVDLAGRGLALVWRRQIQQLNRVSLEXASAVVNAYPSPQLLVQAYQQ 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,072,253
Number of Sequences: 62578
Number of extensions: 452940
Number of successful extensions: 1248
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 30
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)