Query 017726
Match_columns 367
No_of_seqs 144 out of 1876
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nnk_A Ureidoglycine-glyoxylat 100.0 1.5E-44 5.1E-49 334.4 38.2 343 6-354 10-370 (411)
2 3isl_A Purine catabolism prote 100.0 1E-43 3.5E-48 329.3 39.5 349 4-358 6-374 (416)
3 3kgw_A Alanine-glyoxylate amin 100.0 2.1E-43 7.3E-48 324.6 37.6 344 5-353 19-367 (393)
4 2z9v_A Aspartate aminotransfer 100.0 1E-42 3.4E-47 320.1 40.0 353 1-358 1-356 (392)
5 3zrp_A Serine-pyruvate aminotr 100.0 2E-42 6.9E-47 317.1 38.1 342 9-359 2-349 (384)
6 3f0h_A Aminotransferase; RER07 100.0 8.9E-43 3.1E-47 318.7 35.4 341 8-359 18-360 (376)
7 2huf_A Alanine glyoxylate amin 100.0 5.9E-42 2E-46 315.1 38.6 353 6-364 16-376 (393)
8 2ch1_A 3-hydroxykynurenine tra 100.0 9E-42 3.1E-46 314.2 38.3 342 6-352 15-361 (396)
9 2yrr_A Aminotransferase, class 100.0 5.3E-42 1.8E-46 310.6 35.9 337 11-360 2-339 (353)
10 2dr1_A PH1308 protein, 386AA l 100.0 2.6E-41 8.8E-46 310.0 40.2 346 7-359 18-365 (386)
11 1iug_A Putative aspartate amin 100.0 1.8E-41 6E-46 307.3 34.3 329 11-358 3-333 (352)
12 1vjo_A Alanine--glyoxylate ami 100.0 7.3E-41 2.5E-45 307.8 37.5 351 8-365 33-389 (393)
13 3ffr_A Phosphoserine aminotran 100.0 1.8E-41 6E-46 308.4 32.5 341 9-365 4-358 (362)
14 3m5u_A Phosphoserine aminotran 100.0 3.6E-40 1.2E-44 296.4 31.5 327 5-360 1-347 (361)
15 2bkw_A Alanine-glyoxylate amin 100.0 2.1E-39 7.2E-44 297.2 36.9 352 5-365 1-378 (385)
16 1m32_A 2-aminoethylphosphonate 100.0 7.8E-39 2.7E-43 291.3 37.9 342 9-359 4-351 (366)
17 3qm2_A Phosphoserine aminotran 100.0 1.8E-41 6.1E-46 307.6 19.1 327 9-360 27-372 (386)
18 3e77_A Phosphoserine aminotran 100.0 2.4E-39 8.3E-44 291.9 21.9 326 11-360 15-362 (377)
19 1elu_A L-cysteine/L-cystine C- 100.0 2.6E-37 8.8E-42 283.8 29.3 342 7-366 15-387 (390)
20 1kmj_A Selenocysteine lyase; p 100.0 1.3E-36 4.6E-41 280.4 30.1 334 9-359 24-391 (406)
21 2c0r_A PSAT, phosphoserine ami 100.0 7E-37 2.4E-41 278.2 26.8 330 8-365 3-355 (362)
22 3ke3_A Putative serine-pyruvat 100.0 1.1E-36 3.6E-41 278.6 27.0 327 19-358 8-361 (379)
23 1t3i_A Probable cysteine desul 100.0 9.2E-36 3.1E-40 276.1 30.3 336 9-358 29-398 (420)
24 4hvk_A Probable cysteine desul 100.0 6.2E-36 2.1E-40 273.6 27.5 323 10-358 2-358 (382)
25 3e9k_A Kynureninase; kynurenin 100.0 5E-36 1.7E-40 281.5 26.8 337 8-360 67-448 (465)
26 2fyf_A PSAT, phosphoserine ami 100.0 5.8E-35 2E-39 268.9 32.4 331 9-359 40-384 (398)
27 4eb5_A Probable cysteine desul 100.0 6.9E-36 2.3E-40 273.5 25.5 323 10-358 2-358 (382)
28 3lvm_A Cysteine desulfurase; s 100.0 2.3E-35 8E-40 273.8 29.3 328 6-358 20-384 (423)
29 3cai_A Possible aminotransfera 100.0 8.2E-35 2.8E-39 268.6 32.2 337 8-366 26-404 (406)
30 1eg5_A Aminotransferase; PLP-d 100.0 2.6E-35 8.9E-40 269.8 28.4 324 10-358 3-361 (384)
31 3vax_A Putative uncharacterize 100.0 2.3E-35 7.8E-40 271.8 21.2 333 8-365 20-394 (400)
32 3ffh_A Histidinol-phosphate am 100.0 4.5E-33 1.5E-37 253.2 33.8 311 16-366 42-361 (363)
33 1w23_A Phosphoserine aminotran 100.0 4E-34 1.4E-38 259.8 26.5 323 8-358 2-345 (360)
34 3ly1_A Putative histidinol-pho 100.0 4.2E-33 1.4E-37 252.5 31.6 319 9-365 17-346 (354)
35 3f9t_A TDC, L-tyrosine decarbo 100.0 6.4E-33 2.2E-37 254.9 32.1 319 11-359 33-384 (397)
36 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 7.3E-35 2.5E-39 265.7 18.8 323 7-358 7-355 (371)
37 1b5p_A Protein (aspartate amin 100.0 2E-33 6.8E-38 257.6 28.0 300 19-351 44-365 (385)
38 3get_A Histidinol-phosphate am 100.0 8.5E-34 2.9E-38 258.1 25.4 316 11-366 33-362 (365)
39 1qz9_A Kynureninase; kynurenin 100.0 3.7E-33 1.3E-37 258.4 27.2 331 6-359 26-388 (416)
40 1gd9_A Aspartate aminotransfer 100.0 5.1E-33 1.7E-37 255.2 27.7 303 19-352 39-367 (389)
41 2o1b_A Aminotransferase, class 100.0 5E-33 1.7E-37 256.4 26.3 324 10-365 49-397 (404)
42 1o4s_A Aspartate aminotransfer 100.0 3.7E-33 1.3E-37 256.1 24.2 297 19-352 54-370 (389)
43 1u08_A Hypothetical aminotrans 100.0 4E-33 1.4E-37 255.7 24.4 315 19-365 43-384 (386)
44 3euc_A Histidinol-phosphate am 100.0 1.3E-32 4.5E-37 250.5 27.6 316 9-365 31-362 (367)
45 2z61_A Probable aspartate amin 100.0 4.9E-33 1.7E-37 253.6 22.3 292 20-351 43-351 (370)
46 1v2d_A Glutamine aminotransfer 100.0 7.2E-33 2.5E-37 253.5 23.3 309 19-364 38-364 (381)
47 2x5d_A Probable aminotransfera 100.0 1.8E-32 6.3E-37 253.4 25.6 302 19-352 50-379 (412)
48 3b46_A Aminotransferase BNA3; 100.0 2.1E-32 7E-37 255.6 26.1 326 9-365 58-441 (447)
49 2dou_A Probable N-succinyldiam 100.0 1.5E-32 5E-37 251.0 24.6 299 20-352 39-359 (376)
50 3p1t_A Putative histidinol-pho 100.0 7.5E-32 2.6E-36 242.6 28.9 304 16-366 26-332 (337)
51 3op7_A Aminotransferase class 100.0 5.1E-32 1.8E-36 247.3 27.0 308 22-364 46-364 (375)
52 2o0r_A RV0858C (N-succinyldiam 100.0 8E-33 2.7E-37 255.8 21.7 315 19-365 38-390 (411)
53 3nra_A Aspartate aminotransfer 100.0 1.8E-32 6E-37 253.1 23.7 318 16-364 50-398 (407)
54 1yiz_A Kynurenine aminotransfe 100.0 2.2E-32 7.5E-37 254.2 24.5 315 19-364 50-422 (429)
55 1j32_A Aspartate aminotransfer 100.0 1.3E-32 4.5E-37 252.4 22.0 301 19-351 43-367 (388)
56 3h14_A Aminotransferase, class 100.0 3.9E-32 1.3E-36 249.5 24.9 312 18-364 43-375 (391)
57 3dyd_A Tyrosine aminotransfera 100.0 9.6E-33 3.3E-37 256.3 21.0 301 18-351 70-404 (427)
58 3g0t_A Putative aminotransfera 100.0 3.3E-32 1.1E-36 253.7 24.5 333 18-365 56-431 (437)
59 4dq6_A Putative pyridoxal phos 100.0 1.7E-31 5.7E-36 245.2 28.0 315 19-364 45-386 (391)
60 3dzz_A Putative pyridoxal 5'-p 100.0 1.9E-31 6.6E-36 244.7 28.3 306 18-352 39-370 (391)
61 3kax_A Aminotransferase, class 100.0 1.6E-31 5.4E-36 244.6 26.4 326 9-364 25-378 (383)
62 3a9z_A Selenocysteine lyase; P 100.0 1E-31 3.4E-36 250.0 25.1 329 7-359 17-414 (432)
63 3fdb_A Beta C-S lyase, putativ 100.0 1.3E-31 4.6E-36 244.7 25.5 298 18-352 35-357 (377)
64 3hdo_A Histidinol-phosphate am 100.0 6E-32 2.1E-36 245.5 23.1 306 17-366 37-350 (360)
65 3cq5_A Histidinol-phosphate am 100.0 3.2E-31 1.1E-35 241.5 27.8 306 17-365 41-362 (369)
66 1xi9_A Putative transaminase; 100.0 2E-32 7E-37 252.6 19.8 300 19-351 54-383 (406)
67 3tqx_A 2-amino-3-ketobutyrate 100.0 2.4E-31 8.4E-36 244.7 25.1 284 40-359 86-382 (399)
68 3aow_A Putative uncharacterize 100.0 3.5E-31 1.2E-35 247.0 26.3 315 20-364 92-438 (448)
69 1fg7_A Histidinol phosphate am 100.0 1E-30 3.6E-35 236.9 28.0 285 44-366 60-353 (356)
70 1d2f_A MALY protein; aminotran 100.0 1.9E-30 6.5E-35 238.2 29.7 303 19-353 41-371 (390)
71 1bw0_A TAT, protein (tyrosine 100.0 5.4E-32 1.8E-36 250.6 19.2 305 18-351 49-393 (416)
72 2zyj_A Alpha-aminodipate amino 100.0 8.6E-32 2.9E-36 247.7 20.2 302 20-353 48-374 (397)
73 3mad_A Sphingosine-1-phosphate 100.0 9.9E-31 3.4E-35 248.4 27.7 302 39-365 136-463 (514)
74 1c7n_A Cystalysin; transferase 100.0 2.7E-30 9.4E-35 237.8 29.8 303 19-353 44-375 (399)
75 3l8a_A METC, putative aminotra 100.0 1E-30 3.6E-35 242.3 27.1 317 19-364 74-415 (421)
76 3mc6_A Sphingosine-1-phosphate 100.0 2.3E-31 7.8E-36 251.9 22.9 303 39-365 104-431 (497)
77 3ezs_A Aminotransferase ASPB; 100.0 2.2E-31 7.4E-36 243.2 21.8 316 9-364 24-368 (376)
78 3jtx_A Aminotransferase; NP_28 100.0 5.6E-31 1.9E-35 242.1 24.5 314 17-364 41-391 (396)
79 3ftb_A Histidinol-phosphate am 100.0 7.5E-31 2.5E-35 238.3 24.9 311 9-365 27-355 (361)
80 1rv3_A Serine hydroxymethyltra 100.0 3.2E-31 1.1E-35 249.3 22.9 327 9-352 45-406 (483)
81 2dgk_A GAD-beta, GADB, glutama 100.0 1.7E-30 5.9E-35 242.9 27.7 322 19-358 53-419 (452)
82 2zc0_A Alanine glyoxylate tran 100.0 1.6E-30 5.4E-35 240.0 26.9 316 20-365 50-398 (407)
83 3fvs_A Kynurenine--oxoglutarat 100.0 8.7E-32 3E-36 249.7 18.3 316 19-364 41-415 (422)
84 2gb3_A Aspartate aminotransfer 100.0 4E-31 1.4E-35 244.2 22.3 297 19-351 56-382 (409)
85 3a2b_A Serine palmitoyltransfe 100.0 2E-30 7E-35 238.6 26.8 301 20-358 58-377 (398)
86 1lc5_A COBD, L-threonine-O-3-p 100.0 1.1E-30 3.9E-35 237.4 24.7 311 10-365 26-354 (364)
87 1vp4_A Aminotransferase, putat 100.0 3E-31 1E-35 246.2 21.2 304 20-352 59-398 (425)
88 1fc4_A 2-amino-3-ketobutyrate 100.0 3.6E-30 1.2E-34 237.2 27.6 301 20-358 60-382 (401)
89 3e2y_A Kynurenine-oxoglutarate 100.0 4.2E-31 1.4E-35 244.1 20.9 318 19-366 36-408 (410)
90 1bs0_A Protein (8-amino-7-oxon 100.0 3.4E-30 1.2E-34 236.0 26.7 304 19-359 53-373 (384)
91 2x5f_A Aspartate_tyrosine_phen 100.0 9.4E-31 3.2E-35 243.3 22.1 318 20-365 62-423 (430)
92 2w8t_A SPT, serine palmitoyltr 100.0 6.9E-30 2.4E-34 237.1 27.5 282 41-359 108-401 (427)
93 3hbx_A GAD 1, glutamate decarb 100.0 2.4E-29 8.1E-34 237.5 30.1 323 17-359 65-430 (502)
94 3vp6_A Glutamate decarboxylase 100.0 4.9E-30 1.7E-34 242.6 25.4 343 9-359 97-491 (511)
95 3fkd_A L-threonine-O-3-phospha 100.0 5.1E-30 1.7E-34 231.9 24.5 308 10-366 17-337 (350)
96 3qgu_A LL-diaminopimelate amin 100.0 3.4E-30 1.2E-34 240.8 23.5 317 19-365 82-434 (449)
97 1svv_A Threonine aldolase; str 100.0 4.2E-30 1.4E-34 233.0 23.4 326 5-365 11-352 (359)
98 2r2n_A Kynurenine/alpha-aminoa 100.0 4.5E-29 1.6E-33 231.5 29.5 282 42-351 82-403 (425)
99 4e1o_A HDC, histidine decarbox 100.0 4E-30 1.4E-34 241.8 22.2 335 8-354 79-458 (481)
100 3piu_A 1-aminocyclopropane-1-c 100.0 6.8E-30 2.3E-34 237.8 23.6 314 10-352 40-412 (435)
101 3ele_A Amino transferase; RER0 100.0 2.8E-30 9.7E-35 237.6 20.6 303 19-351 48-376 (398)
102 1uu1_A Histidinol-phosphate am 100.0 1.6E-29 5.5E-34 227.2 24.2 292 18-366 31-333 (335)
103 2a7v_A Serine hydroxymethyltra 100.0 2E-29 6.7E-34 235.0 25.3 326 9-351 55-415 (490)
104 3rq1_A Aminotransferase class 100.0 5.6E-29 1.9E-33 230.5 28.2 304 16-351 53-394 (418)
105 1iay_A ACC synthase 2, 1-amino 100.0 1.6E-29 5.3E-34 234.9 24.1 284 44-357 85-411 (428)
106 2z67_A O-phosphoseryl-tRNA(SEC 100.0 2.2E-29 7.5E-34 235.4 24.9 324 8-366 80-453 (456)
107 2vi8_A Serine hydroxymethyltra 100.0 2.2E-29 7.6E-34 232.1 24.7 312 10-352 25-362 (405)
108 3kki_A CAI-1 autoinducer synth 100.0 1.9E-29 6.5E-34 233.0 23.6 275 42-359 104-390 (409)
109 3t18_A Aminotransferase class 100.0 2.6E-29 8.8E-34 232.4 24.5 308 13-352 49-393 (413)
110 3dr4_A Putative perosamine syn 100.0 1.2E-29 4.1E-34 232.9 21.8 326 9-360 23-380 (391)
111 2bwn_A 5-aminolevulinate synth 100.0 3.5E-29 1.2E-33 230.6 24.8 304 21-359 62-386 (401)
112 2dkj_A Serine hydroxymethyltra 100.0 2.3E-29 7.8E-34 232.2 23.4 326 9-365 24-382 (407)
113 2qma_A Diaminobutyrate-pyruvat 100.0 5.1E-29 1.7E-33 235.6 26.2 336 9-359 101-482 (497)
114 2fnu_A Aminotransferase; prote 100.0 1.2E-28 4E-33 224.9 27.0 316 17-359 8-358 (375)
115 3n0l_A Serine hydroxymethyltra 100.0 1.1E-28 3.7E-33 228.4 26.9 310 10-352 27-364 (417)
116 1v72_A Aldolase; PLP-dependent 100.0 5.4E-29 1.8E-33 225.5 24.3 312 16-365 16-347 (356)
117 1js3_A DDC;, DOPA decarboxylas 100.0 2.4E-29 8.2E-34 237.3 22.5 329 9-353 75-453 (486)
118 3ei9_A LL-diaminopimelate amin 100.0 1.8E-29 6.3E-34 234.7 21.3 308 19-364 69-421 (432)
119 3ppl_A Aspartate aminotransfer 100.0 2.4E-29 8.4E-34 233.5 21.8 316 8-357 33-404 (427)
120 1jg8_A L-ALLO-threonine aldola 100.0 1.5E-28 5.1E-33 221.9 26.2 305 20-360 16-333 (347)
121 3k40_A Aromatic-L-amino-acid d 100.0 2.1E-29 7.3E-34 236.2 21.2 334 8-354 74-451 (475)
122 1wyu_A Glycine dehydrogenase ( 100.0 1.1E-28 3.6E-33 229.8 25.6 325 11-359 67-426 (438)
123 3ez1_A Aminotransferase MOCR f 100.0 8.2E-29 2.8E-33 229.7 24.4 311 10-352 27-395 (423)
124 1wyu_B Glycine dehydrogenase s 100.0 4.8E-28 1.6E-32 227.4 29.3 328 19-364 77-434 (474)
125 2okj_A Glutamate decarboxylase 100.0 1.1E-28 3.6E-33 233.8 24.5 303 40-358 130-487 (504)
126 2jis_A Cysteine sulfinic acid 100.0 1.5E-28 5E-33 233.3 25.0 309 39-359 145-501 (515)
127 3asa_A LL-diaminopimelate amin 100.0 1.1E-28 3.7E-33 227.2 22.8 309 19-365 46-387 (400)
128 3if2_A Aminotransferase; YP_26 100.0 9.9E-30 3.4E-34 237.4 16.1 284 42-352 83-421 (444)
129 3tcm_A Alanine aminotransferas 100.0 2.5E-28 8.6E-33 230.6 25.6 318 20-365 107-488 (500)
130 1mdo_A ARNB aminotransferase; 100.0 3.8E-28 1.3E-32 223.0 25.4 330 3-359 5-372 (393)
131 1b9h_A AHBA synthase, protein 100.0 9.7E-28 3.3E-32 220.0 28.0 294 20-340 15-325 (388)
132 3fsl_A Aromatic-amino-acid ami 100.0 4.3E-28 1.5E-32 223.0 25.3 315 14-365 39-394 (397)
133 3d6k_A Putative aminotransfera 100.0 1.9E-28 6.6E-33 227.1 22.9 313 19-364 48-411 (422)
134 3uwc_A Nucleotide-sugar aminot 100.0 4.8E-28 1.6E-32 220.9 23.2 319 10-360 8-358 (374)
135 4f4e_A Aromatic-amino-acid ami 100.0 1.1E-27 3.9E-32 221.8 25.4 313 16-365 64-416 (420)
136 2aeu_A Hypothetical protein MJ 100.0 2.3E-28 7.9E-33 222.7 20.3 288 16-352 38-349 (374)
137 7aat_A Aspartate aminotransfer 100.0 4E-28 1.4E-32 223.5 21.7 318 11-365 38-397 (401)
138 3g7q_A Valine-pyruvate aminotr 100.0 7.5E-29 2.6E-33 229.5 16.9 309 9-352 32-394 (417)
139 1e5e_A MGL, methionine gamma-l 100.0 5.9E-27 2E-31 215.5 29.4 216 41-292 61-281 (404)
140 3ecd_A Serine hydroxymethyltra 100.0 6.7E-27 2.3E-31 216.9 29.6 310 10-351 34-371 (425)
141 3frk_A QDTB; aminotransferase, 100.0 5.4E-29 1.8E-33 227.1 15.0 325 11-366 6-363 (373)
142 3gbx_A Serine hydroxymethyltra 100.0 2.4E-27 8.1E-32 219.6 26.0 309 11-352 33-371 (420)
143 3ihj_A Alanine aminotransferas 100.0 1.2E-27 3.9E-32 225.8 24.2 282 42-351 129-473 (498)
144 3lws_A Aromatic amino acid bet 100.0 3.3E-28 1.1E-32 220.5 19.1 304 9-352 11-335 (357)
145 3h7f_A Serine hydroxymethyltra 100.0 3.6E-27 1.2E-31 219.9 26.3 311 10-352 47-389 (447)
146 3meb_A Aspartate aminotransfer 100.0 1.7E-27 5.8E-32 222.2 23.7 315 11-365 59-438 (448)
147 1ajs_A Aspartate aminotransfer 100.0 1.4E-27 4.7E-32 220.7 22.7 311 18-365 47-405 (412)
148 2x3l_A ORN/Lys/Arg decarboxyla 100.0 4.9E-28 1.7E-32 225.3 19.4 270 42-357 57-338 (446)
149 1yaa_A Aspartate aminotransfer 100.0 7.2E-28 2.4E-32 222.6 20.4 309 16-365 44-405 (412)
150 2c81_A Glutamine-2-deoxy-scyll 100.0 2.6E-27 9E-32 219.2 24.1 307 14-338 8-342 (418)
151 2rfv_A Methionine gamma-lyase; 100.0 2E-26 6.7E-31 211.9 29.3 244 12-292 30-282 (398)
152 3nyt_A Aminotransferase WBPE; 100.0 1.6E-27 5.6E-32 216.8 21.9 324 11-365 5-358 (367)
153 2oga_A Transaminase; PLP-depen 100.0 4.4E-27 1.5E-31 216.4 25.0 321 9-360 31-383 (399)
154 3pj0_A LMO0305 protein; struct 100.0 5.9E-28 2E-32 219.0 18.3 303 9-351 14-337 (359)
155 1o69_A Aminotransferase; struc 100.0 3.7E-27 1.3E-31 216.5 23.8 298 19-339 9-333 (394)
156 2cb1_A O-acetyl homoserine sul 100.0 3.2E-26 1.1E-30 211.4 30.1 294 19-337 33-354 (412)
157 2eh6_A Acoat, acetylornithine 100.0 1.3E-26 4.3E-31 211.5 26.1 288 20-359 45-364 (375)
158 2ay1_A Aroat, aromatic amino a 100.0 1.3E-27 4.4E-32 219.6 19.6 312 18-366 43-391 (394)
159 2ez2_A Beta-tyrosinase, tyrosi 100.0 3.1E-26 1.1E-30 214.4 28.6 319 8-358 41-416 (456)
160 3ju7_A Putative PLP-dependent 100.0 1.3E-26 4.3E-31 211.2 24.7 315 19-360 13-362 (377)
161 3ndn_A O-succinylhomoserine su 100.0 4.4E-26 1.5E-30 209.7 28.4 283 41-363 80-409 (414)
162 3jzl_A Putative cystathionine 100.0 6.3E-27 2.1E-31 214.2 22.6 283 22-329 32-338 (409)
163 2q7w_A Aspartate aminotransfer 100.0 5.1E-27 1.7E-31 215.7 22.0 310 19-365 44-393 (396)
164 3b1d_A Betac-S lyase; HET: PLP 99.9 2.6E-30 8.9E-35 237.4 0.0 315 19-364 44-386 (392)
165 3f6t_A Aspartate aminotransfer 100.0 1.3E-27 4.4E-32 227.2 18.5 322 21-357 117-509 (533)
166 1gc0_A Methionine gamma-lyase; 100.0 7.1E-26 2.4E-30 208.1 29.2 284 12-336 31-338 (398)
167 3b8x_A WBDK, pyridoxamine 5-ph 100.0 1E-25 3.5E-30 206.6 30.1 323 13-361 6-384 (390)
168 1vef_A Acetylornithine/acetyl- 100.0 9E-27 3.1E-31 214.0 22.7 295 20-359 62-383 (395)
169 1qgn_A Protein (cystathionine 100.0 5.5E-26 1.9E-30 210.2 27.8 257 41-337 113-390 (445)
170 1pff_A Methionine gamma-lyase; 100.0 7.6E-26 2.6E-30 202.8 27.5 251 46-337 2-272 (331)
171 4eu1_A Mitochondrial aspartate 99.9 1.5E-26 5.2E-31 213.5 22.7 313 13-365 53-405 (409)
172 2fq6_A Cystathionine beta-lyas 99.9 1.3E-25 4.3E-30 206.6 28.1 285 41-363 81-407 (415)
173 2po3_A 4-dehydrase; external a 99.9 6.6E-26 2.3E-30 210.2 26.3 290 19-338 29-330 (424)
174 3ruy_A Ornithine aminotransfer 99.9 4.4E-26 1.5E-30 209.2 24.9 293 20-359 53-380 (392)
175 1ibj_A CBL, cystathionine beta 99.9 1.5E-26 5.3E-31 215.5 21.9 166 42-223 133-303 (464)
176 3hvy_A Cystathionine beta-lyas 99.9 7E-26 2.4E-30 207.9 25.9 281 22-328 47-354 (427)
177 3acz_A Methionine gamma-lyase; 99.9 4.3E-25 1.5E-29 202.2 30.7 254 41-336 58-330 (389)
178 3bwn_A AT1G70560, L-tryptophan 99.9 1.7E-27 5.9E-32 218.3 14.6 313 10-365 24-381 (391)
179 3k7y_A Aspartate aminotransfer 99.9 7.6E-26 2.6E-30 207.4 25.2 317 9-365 30-399 (405)
180 1cs1_A CGS, protein (cystathio 99.9 3.2E-25 1.1E-29 203.1 29.3 254 42-336 52-324 (386)
181 3i16_A Aluminum resistance pro 99.9 5.6E-26 1.9E-30 208.5 24.1 285 22-329 46-355 (427)
182 3ri6_A O-acetylhomoserine sulf 99.9 1.2E-25 4.2E-30 207.2 26.5 294 41-363 81-425 (430)
183 3qhx_A Cystathionine gamma-syn 99.9 1.1E-25 3.9E-30 206.1 25.5 284 41-364 65-388 (392)
184 1s0a_A Adenosylmethionine-8-am 99.9 1.8E-25 6E-30 207.7 26.9 315 20-365 60-418 (429)
185 1ax4_A Tryptophanase; tryptoph 99.9 2.2E-26 7.5E-31 216.1 20.7 296 42-365 76-435 (467)
186 3cog_A Cystathionine gamma-lya 99.9 5.7E-25 1.9E-29 202.1 28.7 251 42-335 67-338 (403)
187 2ord_A Acoat, acetylornithine 99.9 6.9E-26 2.4E-30 208.3 20.1 292 20-358 57-382 (397)
188 2zy4_A L-aspartate beta-decarb 99.9 2.8E-26 9.4E-31 218.1 17.9 281 60-352 165-502 (546)
189 4adb_A Succinylornithine trans 99.9 5.3E-25 1.8E-29 202.9 24.1 292 21-358 57-385 (406)
190 1sff_A 4-aminobutyrate aminotr 99.9 4.9E-25 1.7E-29 204.5 23.5 307 20-359 58-410 (426)
191 1n8p_A Cystathionine gamma-lya 99.9 6.8E-25 2.3E-29 200.9 24.0 210 42-292 55-274 (393)
192 1c4k_A Protein (ornithine deca 99.9 6.5E-25 2.2E-29 213.3 24.1 296 42-359 173-552 (730)
193 2vyc_A Biodegradative arginine 99.9 3.2E-24 1.1E-28 210.3 27.9 295 42-365 205-599 (755)
194 3ht4_A Aluminum resistance pro 99.9 7.2E-25 2.5E-29 202.2 22.0 284 22-329 38-344 (431)
195 2oat_A Ornithine aminotransfer 99.9 3E-24 1E-28 199.7 26.3 296 20-359 93-425 (439)
196 3nx3_A Acoat, acetylornithine 99.9 3.4E-24 1.1E-28 196.9 25.2 295 21-359 54-381 (395)
197 1z7d_A Ornithine aminotransfer 99.9 1.1E-23 3.8E-28 195.5 28.2 295 20-359 82-415 (433)
198 2pb2_A Acetylornithine/succiny 99.9 2.5E-24 8.6E-29 199.2 22.2 294 20-358 74-403 (420)
199 3a8u_X Omega-amino acid--pyruv 99.9 3.7E-24 1.3E-28 199.9 23.5 313 21-359 68-433 (449)
200 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.3E-23 4.3E-28 195.5 26.9 319 17-360 38-423 (437)
201 3dxv_A Alpha-amino-epsilon-cap 99.9 2.8E-24 9.5E-29 200.2 22.3 307 20-358 60-410 (439)
202 3i4j_A Aminotransferase, class 99.9 1.5E-23 5.3E-28 194.6 26.5 309 21-358 47-413 (430)
203 3tfu_A Adenosylmethionine-8-am 99.9 4.3E-24 1.5E-28 199.3 20.9 309 21-359 93-439 (457)
204 2eo5_A 419AA long hypothetical 99.9 1E-23 3.5E-28 195.1 22.7 302 21-364 61-411 (419)
205 2ctz_A O-acetyl-L-homoserine s 99.9 1.2E-23 4E-28 194.6 23.0 158 42-214 58-220 (421)
206 3nmy_A Xometc, cystathionine g 99.9 3.2E-23 1.1E-27 189.8 25.5 282 41-363 66-392 (400)
207 2oqx_A Tryptophanase; lyase, p 99.9 2.1E-24 7.2E-29 202.6 17.8 289 41-359 73-428 (467)
208 2hox_A ALLIIN lyase 1; cystein 99.9 5.7E-25 1.9E-29 203.6 13.3 265 44-352 102-406 (427)
209 3l44_A Glutamate-1-semialdehyd 99.9 3.1E-24 1E-28 199.6 15.9 304 20-365 72-424 (434)
210 3dod_A Adenosylmethionine-8-am 99.9 1E-22 3.5E-27 190.0 25.9 310 21-359 62-429 (448)
211 1zod_A DGD, 2,2-dialkylglycine 99.9 4.3E-23 1.5E-27 191.8 22.8 310 21-359 61-418 (433)
212 3gju_A Putative aminotransfera 99.9 2.5E-22 8.6E-27 187.9 27.4 313 21-359 69-442 (460)
213 3n5m_A Adenosylmethionine-8-am 99.9 2.1E-22 7.1E-27 188.2 26.6 312 21-359 67-438 (452)
214 3fq8_A Glutamate-1-semialdehyd 99.9 6.4E-23 2.2E-27 190.3 20.7 306 20-365 69-421 (427)
215 4e77_A Glutamate-1-semialdehyd 99.9 3.5E-22 1.2E-26 185.4 24.2 306 20-365 70-423 (429)
216 2cjg_A L-lysine-epsilon aminot 99.9 7.1E-23 2.4E-27 191.0 19.4 307 21-359 72-434 (449)
217 3ou5_A Serine hydroxymethyltra 99.9 1.4E-21 4.6E-26 174.8 26.4 312 9-351 55-415 (490)
218 3k28_A Glutamate-1-semialdehyd 99.9 9.9E-24 3.4E-28 195.8 13.1 304 20-365 70-421 (429)
219 4a6r_A Omega transaminase; tra 99.9 1.8E-22 6.2E-27 188.9 21.7 306 21-359 68-435 (459)
220 3oks_A 4-aminobutyrate transam 99.9 3.2E-22 1.1E-26 186.7 22.3 308 21-359 79-437 (451)
221 4ffc_A 4-aminobutyrate aminotr 99.9 5E-22 1.7E-26 185.4 22.0 304 21-359 82-435 (453)
222 2epj_A Glutamate-1-semialdehyd 99.9 2.3E-22 7.9E-27 186.9 18.9 306 20-365 73-425 (434)
223 3i5t_A Aminotransferase; pyrid 99.9 2.7E-21 9.2E-26 181.4 25.5 310 21-358 72-439 (476)
224 3hmu_A Aminotransferase, class 99.9 5.7E-22 2E-26 185.6 20.7 306 21-359 73-438 (472)
225 2cy8_A D-phgat, D-phenylglycin 99.9 1.3E-21 4.5E-26 182.8 21.7 305 20-365 74-429 (453)
226 4h51_A Aspartate aminotransfer 99.9 3.3E-21 1.1E-25 176.6 22.7 315 16-365 59-411 (420)
227 3n75_A LDC, lysine decarboxyla 99.9 3.7E-21 1.3E-25 185.5 22.3 225 41-292 194-442 (715)
228 2e7u_A Glutamate-1-semialdehyd 99.9 9.6E-22 3.3E-26 182.2 17.7 306 20-365 69-421 (424)
229 3bc8_A O-phosphoseryl-tRNA(SEC 99.8 9.2E-20 3.2E-24 166.0 16.6 260 9-298 69-347 (450)
230 1ohv_A 4-aminobutyrate aminotr 99.8 1.6E-18 5.4E-23 162.4 21.3 300 20-360 80-458 (472)
231 2yky_A Beta-transaminase; tran 99.7 2E-21 6.9E-26 180.0 0.0 307 21-365 118-454 (465)
232 3hl2_A O-phosphoseryl-tRNA(SEC 99.8 1.3E-18 4.6E-23 156.3 17.0 229 44-298 118-365 (501)
233 4ao9_A Beta-phenylalanine amin 99.7 2.9E-16 1E-20 144.5 16.8 241 21-292 105-361 (454)
234 4atq_A 4-aminobutyrate transam 99.7 1.1E-13 3.9E-18 127.8 28.0 310 21-360 82-442 (456)
235 4e3q_A Pyruvate transaminase; 99.6 3.4E-13 1.2E-17 125.1 25.2 311 21-359 85-454 (473)
236 4a0g_A Adenosylmethionine-8-am 99.5 1.9E-13 6.6E-18 135.1 13.7 311 21-360 399-815 (831)
237 1wzu_A Quinolinate synthetase 67.8 27 0.00091 29.7 8.5 85 71-165 128-222 (300)
238 3dr5_A Putative O-methyltransf 63.1 56 0.0019 26.1 10.0 142 22-178 19-165 (221)
239 2yxb_A Coenzyme B12-dependent 62.6 45 0.0015 25.2 8.4 58 99-165 38-95 (161)
240 2pju_A Propionate catabolism o 61.0 23 0.0008 28.7 6.7 113 8-131 12-129 (225)
241 1y80_A Predicted cobalamin bin 60.6 43 0.0015 26.6 8.3 58 99-165 108-165 (210)
242 3ezx_A MMCP 1, monomethylamine 60.2 42 0.0014 26.9 8.2 72 85-165 93-171 (215)
243 3lzd_A DPH2; diphthamide biosy 56.2 30 0.001 30.5 7.0 81 118-204 38-119 (378)
244 2i2x_B MTAC, methyltransferase 53.9 53 0.0018 27.1 8.0 82 84-174 123-209 (258)
245 2hmc_A AGR_L_411P, dihydrodipi 52.5 1.1E+02 0.0037 26.6 10.0 76 99-178 110-189 (344)
246 4g81_D Putative hexonate dehyd 52.4 88 0.003 25.7 9.1 103 55-163 5-114 (255)
247 3kts_A Glycerol uptake operon 51.5 17 0.00059 28.6 4.3 83 122-225 18-100 (192)
248 1ccw_A Protein (glutamate muta 50.0 37 0.0013 24.9 5.8 68 99-175 23-91 (137)
249 4fgs_A Probable dehydrogenase 48.8 83 0.0028 26.2 8.4 96 63-164 31-132 (273)
250 3rpc_A Possible metal-dependen 48.4 1.1E+02 0.0038 25.0 10.4 79 84-165 160-246 (264)
251 3u81_A Catechol O-methyltransf 46.0 77 0.0026 25.0 7.7 148 19-178 20-172 (221)
252 1tks_A 3,4-dihydroxy-2-butanon 43.8 26 0.00088 27.8 4.1 35 137-173 159-193 (204)
253 2l69_A Rossmann 2X3 fold prote 43.3 39 0.0013 22.6 4.3 71 46-116 37-110 (134)
254 3keo_A Redox-sensing transcrip 43.1 39 0.0013 27.0 5.3 113 44-179 68-182 (212)
255 3m4x_A NOL1/NOP2/SUN family pr 42.5 1.9E+02 0.0067 26.1 10.9 98 47-153 93-191 (456)
256 3tla_A MCCF; serine protease, 42.0 1.4E+02 0.0048 26.2 9.1 73 80-155 39-127 (371)
257 4es6_A Uroporphyrinogen-III sy 41.8 51 0.0017 26.9 6.1 62 82-146 131-194 (254)
258 1iv0_A Hypothetical protein; r 41.4 53 0.0018 22.5 5.0 55 120-179 37-96 (98)
259 1pjq_A CYSG, siroheme synthase 40.3 50 0.0017 30.0 6.2 92 62-177 14-106 (457)
260 4gqr_A Pancreatic alpha-amylas 39.5 17 0.00059 33.1 3.0 31 146-178 69-99 (496)
261 3uf0_A Short-chain dehydrogena 39.3 1.6E+02 0.0055 24.2 9.1 84 63-151 33-120 (273)
262 3i6i_A Putative leucoanthocyan 39.2 1.1E+02 0.0037 26.2 8.1 56 105-173 59-115 (346)
263 1jr2_A Uroporphyrinogen-III sy 38.7 84 0.0029 26.2 7.1 76 69-146 142-219 (286)
264 3m6w_A RRNA methylase; rRNA me 38.2 2.3E+02 0.0079 25.7 12.5 97 47-153 89-186 (464)
265 4h1h_A LMO1638 protein; MCCF-l 38.0 1.6E+02 0.0053 25.3 8.7 73 80-155 8-96 (327)
266 2rfg_A Dihydrodipicolinate syn 37.1 77 0.0026 26.8 6.5 75 99-178 87-164 (297)
267 3grp_A 3-oxoacyl-(acyl carrier 36.7 1.1E+02 0.0038 25.1 7.4 83 63-151 29-115 (266)
268 3rwb_A TPLDH, pyridoxal 4-dehy 36.7 1.5E+02 0.0051 23.8 8.2 83 63-152 9-95 (247)
269 4e5s_A MCCFLIKE protein (BA_56 36.4 1.5E+02 0.0052 25.4 8.4 73 80-155 8-96 (331)
270 1jr2_A Uroporphyrinogen-III sy 36.3 35 0.0012 28.6 4.3 63 83-147 20-86 (286)
271 3dfz_A SIRC, precorrin-2 dehyd 36.1 1.6E+02 0.0056 23.6 8.0 90 62-176 33-123 (223)
272 1wcw_A Uroporphyrinogen III sy 35.8 23 0.00078 29.2 3.0 63 83-147 7-69 (261)
273 3tfo_A Putative 3-oxoacyl-(acy 35.7 1.8E+02 0.0062 23.7 8.9 86 63-152 6-96 (264)
274 3mw8_A Uroporphyrinogen-III sy 35.4 36 0.0012 27.6 4.1 61 83-146 119-181 (240)
275 3lyl_A 3-oxoacyl-(acyl-carrier 35.2 1.7E+02 0.0058 23.3 9.8 84 64-151 8-96 (247)
276 3re1_A Uroporphyrinogen-III sy 34.6 30 0.001 28.7 3.6 63 83-147 13-76 (269)
277 1nu0_A Hypothetical protein YQ 34.4 61 0.0021 23.8 4.8 58 119-179 38-99 (138)
278 1vhx_A Putative holliday junct 34.2 63 0.0021 24.2 4.9 55 120-179 41-101 (150)
279 3sr3_A Microcin immunity prote 34.0 2.3E+02 0.0078 24.4 9.1 73 80-155 9-97 (336)
280 3gi1_A LBP, laminin-binding pr 33.8 2.1E+02 0.0071 23.9 9.1 77 83-173 178-255 (286)
281 4dqx_A Probable oxidoreductase 33.5 2E+02 0.0069 23.6 8.8 84 63-152 29-116 (277)
282 4had_A Probable oxidoreductase 33.1 1.3E+02 0.0044 25.8 7.6 13 136-148 85-97 (350)
283 4iin_A 3-ketoacyl-acyl carrier 33.0 2E+02 0.0068 23.4 9.0 85 63-151 31-121 (271)
284 3is3_A 17BETA-hydroxysteroid d 32.9 2E+02 0.0068 23.4 8.5 86 63-152 20-111 (270)
285 3r1i_A Short-chain type dehydr 32.9 2E+02 0.007 23.5 8.9 84 63-151 35-123 (276)
286 3sju_A Keto reductase; short-c 32.6 2.1E+02 0.0071 23.5 8.6 86 63-152 26-116 (279)
287 2qlc_A DNA repair protein RADC 32.6 89 0.003 22.6 5.3 44 121-171 54-105 (126)
288 4es6_A Uroporphyrinogen-III sy 32.5 33 0.0011 28.1 3.4 63 83-147 5-68 (254)
289 1g94_A Alpha-amylase; beta-alp 32.0 29 0.00099 31.4 3.2 32 145-178 56-87 (448)
290 4ibo_A Gluconate dehydrogenase 31.2 2.1E+02 0.0071 23.4 8.3 85 63-151 28-117 (271)
291 3pxx_A Carveol dehydrogenase; 31.2 2.1E+02 0.0073 23.3 8.5 96 63-162 12-124 (287)
292 3gvc_A Oxidoreductase, probabl 30.9 2E+02 0.007 23.6 8.2 83 63-151 31-117 (277)
293 3si9_A DHDPS, dihydrodipicolin 30.7 2.4E+02 0.0083 23.9 8.6 77 99-177 109-186 (315)
294 2qv5_A AGR_C_5032P, uncharacte 30.6 1E+02 0.0034 25.6 5.9 78 95-177 67-163 (261)
295 2nly_A BH1492 protein, diverge 30.5 60 0.0021 26.6 4.5 71 99-175 44-133 (245)
296 3bul_A Methionine synthase; tr 30.0 1.5E+02 0.0051 27.9 7.6 84 84-176 98-186 (579)
297 2yxg_A DHDPS, dihydrodipicolin 29.7 2.4E+02 0.0082 23.5 8.4 75 99-177 87-164 (289)
298 1lwj_A 4-alpha-glucanotransfer 29.3 40 0.0014 30.3 3.6 32 145-178 61-92 (441)
299 3a5f_A Dihydrodipicolinate syn 29.2 2.4E+02 0.0081 23.6 8.3 76 99-177 88-164 (291)
300 2pcq_A Putative dihydrodipicol 29.2 2.1E+02 0.0072 23.8 7.9 124 46-177 20-155 (283)
301 3d8t_A Uroporphyrinogen-III sy 29.2 26 0.00088 29.5 2.2 63 83-147 32-94 (286)
302 3bh4_A Alpha-amylase; calcium, 28.9 37 0.0013 31.0 3.3 30 146-177 71-100 (483)
303 2ehh_A DHDPS, dihydrodipicolin 28.6 2.6E+02 0.0089 23.4 8.7 75 99-177 87-164 (294)
304 3cpr_A Dihydrodipicolinate syn 28.6 1.9E+02 0.0066 24.3 7.7 74 99-177 103-179 (304)
305 2o1e_A YCDH; alpha-beta protei 28.5 2.5E+02 0.0084 23.8 8.3 77 83-173 189-266 (312)
306 3dm5_A SRP54, signal recogniti 28.5 3.3E+02 0.011 24.5 13.4 133 41-179 73-225 (443)
307 3imf_A Short chain dehydrogena 28.5 2E+02 0.0069 23.2 7.7 82 63-148 8-94 (257)
308 1ud2_A Amylase, alpha-amylase; 28.3 39 0.0013 30.8 3.4 31 146-178 73-103 (480)
309 1wpc_A Glucan 1,4-alpha-maltoh 28.2 39 0.0013 30.9 3.4 31 146-178 75-105 (485)
310 3flu_A DHDPS, dihydrodipicolin 28.2 2.7E+02 0.0091 23.4 9.1 76 99-177 94-170 (297)
311 1mxg_A Alpha amylase; hyperthe 28.2 40 0.0014 30.4 3.4 31 146-178 79-109 (435)
312 2xij_A Methylmalonyl-COA mutas 27.9 1.9E+02 0.0065 28.2 8.1 73 84-165 604-681 (762)
313 1hvx_A Alpha-amylase; hydrolas 27.9 40 0.0014 31.2 3.4 30 146-177 74-103 (515)
314 3ftp_A 3-oxoacyl-[acyl-carrier 27.8 2.5E+02 0.0085 22.9 8.6 85 63-151 30-119 (270)
315 3bk2_A RNAse J, metal dependen 27.8 1.2E+02 0.0041 28.3 6.7 77 81-165 336-420 (562)
316 2abq_A Fructose 1-phosphate ki 27.6 2.6E+02 0.009 23.1 10.9 54 121-177 108-163 (306)
317 4fn4_A Short chain dehydrogena 27.5 2.5E+02 0.0086 22.9 8.8 67 63-132 9-77 (254)
318 1g57_A DHBP synthase, 3,4-dihy 27.5 72 0.0025 25.6 4.3 35 137-174 167-201 (217)
319 3tjr_A Short chain dehydrogena 27.0 2.7E+02 0.0093 23.1 9.0 85 63-152 34-123 (301)
320 3mw8_A Uroporphyrinogen-III sy 27.0 57 0.002 26.3 3.9 59 84-147 1-60 (240)
321 3osu_A 3-oxoacyl-[acyl-carrier 26.9 2.4E+02 0.0082 22.5 8.9 84 64-151 7-96 (246)
322 2wkj_A N-acetylneuraminate lya 26.6 2.2E+02 0.0075 24.0 7.7 76 99-178 98-176 (303)
323 1wcw_A Uroporphyrinogen III sy 26.5 71 0.0024 26.1 4.5 59 84-146 130-192 (261)
324 4eso_A Putative oxidoreductase 26.3 2.5E+02 0.0087 22.5 8.4 82 63-151 11-96 (255)
325 4dmm_A 3-oxoacyl-[acyl-carrier 26.3 2.6E+02 0.009 22.7 9.0 85 63-151 30-120 (269)
326 3mio_A DHBP synthase, 3,4-dihy 26.2 60 0.002 25.8 3.6 33 138-173 159-193 (206)
327 1req_A Methylmalonyl-COA mutas 26.2 2.1E+02 0.0071 27.7 7.9 84 84-176 596-685 (727)
328 3u5t_A 3-oxoacyl-[acyl-carrier 26.2 2.6E+02 0.009 22.7 8.3 84 63-151 30-119 (267)
329 3zq4_A Ribonuclease J 1, RNAse 26.1 1.2E+02 0.0042 28.2 6.4 77 81-165 321-405 (555)
330 1oyw_A RECQ helicase, ATP-depe 25.7 2E+02 0.0067 26.5 7.7 138 19-181 8-152 (523)
331 2dun_A POL MU, DNA polymerase 25.7 1.2E+02 0.004 22.2 4.8 42 280-326 26-67 (133)
332 3kcq_A Phosphoribosylglycinami 25.6 2.5E+02 0.0087 22.3 8.0 85 64-159 13-100 (215)
333 3bzy_B ESCU; auto cleavage pro 25.4 42 0.0014 22.2 2.2 20 156-177 29-48 (83)
334 2guy_A Alpha-amylase A; (beta- 25.4 51 0.0018 30.0 3.7 36 141-178 85-120 (478)
335 3re1_A Uroporphyrinogen-III sy 25.3 50 0.0017 27.3 3.3 33 83-115 140-172 (269)
336 3m9w_A D-xylose-binding peripl 25.2 2.6E+02 0.009 23.0 8.1 67 99-176 24-91 (313)
337 4aie_A Glucan 1,6-alpha-glucos 24.8 52 0.0018 30.4 3.7 32 145-178 71-102 (549)
338 1xrs_B D-lysine 5,6-aminomutas 24.8 2.9E+02 0.01 22.7 8.1 56 103-165 152-209 (262)
339 1f6k_A N-acetylneuraminate lya 24.8 2.3E+02 0.008 23.6 7.4 74 99-177 91-167 (293)
340 1pq4_A Periplasmic binding pro 24.6 2.4E+02 0.0083 23.5 7.5 76 83-173 189-264 (291)
341 2dh2_A 4F2 cell-surface antige 24.6 45 0.0015 29.9 3.0 32 145-178 73-104 (424)
342 3oid_A Enoyl-[acyl-carrier-pro 24.5 2.8E+02 0.0095 22.4 8.5 85 63-151 6-96 (258)
343 3h7a_A Short chain dehydrogena 24.3 2.8E+02 0.0094 22.3 9.4 85 63-151 10-97 (252)
344 3ujp_A Mn transporter subunit; 24.3 3.2E+02 0.011 23.0 9.3 75 84-172 190-265 (307)
345 3jy6_A Transcriptional regulat 24.2 2.2E+02 0.0074 23.0 7.2 64 100-177 30-94 (276)
346 4e6p_A Probable sorbitol dehyd 24.2 2.8E+02 0.0095 22.3 9.4 82 63-151 11-96 (259)
347 3rkr_A Short chain oxidoreduct 24.2 2.8E+02 0.0096 22.3 8.9 81 63-147 31-116 (262)
348 3l77_A Short-chain alcohol deh 24.1 2.1E+02 0.0073 22.5 7.0 96 63-162 5-107 (235)
349 4fc7_A Peroxisomal 2,4-dienoyl 24.0 2.9E+02 0.01 22.5 9.4 82 63-148 29-116 (277)
350 1ht6_A AMY1, alpha-amylase iso 23.9 49 0.0017 29.4 3.1 30 148-179 63-92 (405)
351 2bfd_B 2-oxoisovalerate dehydr 23.9 1.2E+02 0.0041 26.2 5.5 22 154-177 260-281 (342)
352 3v2g_A 3-oxoacyl-[acyl-carrier 23.8 3E+02 0.01 22.4 8.9 85 63-151 33-123 (271)
353 3hh8_A Metal ABC transporter s 23.7 2.7E+02 0.0094 23.3 7.7 75 85-173 184-259 (294)
354 3l6e_A Oxidoreductase, short-c 23.7 2.7E+02 0.0093 22.0 8.5 82 63-151 6-91 (235)
355 1sqg_A SUN protein, FMU protei 23.7 3.5E+02 0.012 24.0 8.8 99 45-153 232-331 (429)
356 1snn_A DHBP synthase, 3,4-dihy 23.7 72 0.0025 25.7 3.7 33 140-174 180-212 (227)
357 3gaf_A 7-alpha-hydroxysteroid 23.5 2.9E+02 0.0099 22.2 8.1 81 63-147 14-99 (256)
358 3cx3_A Lipoprotein; zinc-bindi 23.5 2.2E+02 0.0075 23.7 7.0 77 83-173 176-253 (284)
359 1gcy_A Glucan 1,4-alpha-maltot 23.4 50 0.0017 30.6 3.2 29 148-178 87-115 (527)
360 2aaa_A Alpha-amylase; glycosid 23.2 57 0.002 29.7 3.5 37 140-178 84-120 (484)
361 3op4_A 3-oxoacyl-[acyl-carrier 23.2 2.9E+02 0.0098 22.1 8.4 83 63-151 11-97 (248)
362 2prs_A High-affinity zinc upta 23.1 2.6E+02 0.0089 23.2 7.4 77 83-173 173-250 (284)
363 3d8t_A Uroporphyrinogen-III sy 23.1 79 0.0027 26.4 4.1 59 84-146 155-217 (286)
364 1yb1_A 17-beta-hydroxysteroid 23.0 3E+02 0.01 22.3 8.2 84 63-151 34-122 (272)
365 1ry2_A Acetyl-coenzyme A synth 22.8 3E+02 0.01 26.1 8.7 74 81-161 136-210 (663)
366 2z1k_A (NEO)pullulanase; hydro 22.6 53 0.0018 29.8 3.2 37 140-178 83-119 (475)
367 1jae_A Alpha-amylase; glycosid 22.6 40 0.0014 30.7 2.4 32 145-178 66-97 (471)
368 3pgx_A Carveol dehydrogenase; 22.6 3.1E+02 0.011 22.3 8.1 85 63-151 17-119 (280)
369 1zja_A Trehalulose synthase; s 22.5 62 0.0021 30.2 3.6 32 145-178 71-102 (557)
370 3r3h_A O-methyltransferase, SA 22.5 3E+02 0.01 22.0 9.3 120 46-179 50-173 (242)
371 2q5c_A NTRC family transcripti 22.3 2.8E+02 0.0094 21.5 9.5 85 64-164 33-117 (196)
372 3guy_A Short-chain dehydrogena 22.3 2.8E+02 0.0097 21.7 9.8 83 63-152 4-87 (230)
373 1wza_A Alpha-amylase A; hydrol 22.3 53 0.0018 30.0 3.1 30 147-178 75-104 (488)
374 3ju3_A Probable 2-oxoacid ferr 22.2 2.1E+02 0.0071 20.1 5.8 29 103-131 35-63 (118)
375 3dhu_A Alpha-amylase; structur 22.2 48 0.0016 29.9 2.8 31 146-178 76-106 (449)
376 3quv_A TRNA (guanine-N(1)-)-me 22.1 78 0.0027 25.7 3.5 47 122-174 66-112 (246)
377 3l6u_A ABC-type sugar transpor 22.1 2.9E+02 0.01 22.3 7.7 67 99-176 30-97 (293)
378 3g1w_A Sugar ABC transporter; 22.1 2.6E+02 0.0089 22.9 7.4 68 99-177 26-95 (305)
379 1w85_B Pyruvate dehydrogenase 21.7 1.4E+02 0.0047 25.5 5.5 23 154-178 241-263 (324)
380 1m53_A Isomaltulose synthase; 21.6 56 0.0019 30.6 3.2 31 146-178 85-115 (570)
381 2wc7_A Alpha amylase, catalyti 21.3 55 0.0019 29.9 3.0 37 140-178 89-125 (488)
382 2gas_A Isoflavone reductase; N 21.3 3.3E+02 0.011 22.3 7.8 49 106-169 55-103 (307)
383 1ixk_A Methyltransferase; open 21.3 3.7E+02 0.013 22.6 10.2 97 46-153 105-203 (315)
384 1qyd_A Pinoresinol-lariciresin 21.3 3.4E+02 0.012 22.3 8.4 43 122-171 66-110 (313)
385 3uug_A Multiple sugar-binding 21.2 2.8E+02 0.0095 23.0 7.5 67 99-176 25-92 (330)
386 1qho_A Alpha-amylase; glycosid 21.1 67 0.0023 30.9 3.6 38 139-178 93-130 (686)
387 1e2b_A Enzyme IIB-cellobiose; 20.9 95 0.0032 21.5 3.5 55 139-200 5-59 (106)
388 2xw6_A MGS, methylglyoxal synt 20.9 2.2E+02 0.0076 20.7 5.6 62 106-175 48-111 (134)
389 1d3c_A Cyclodextrin glycosyltr 20.8 68 0.0023 30.9 3.6 36 140-177 102-137 (686)
390 3n74_A 3-ketoacyl-(acyl-carrie 20.8 3.2E+02 0.011 21.8 8.9 77 63-146 12-92 (261)
391 2ywb_A GMP synthase [glutamine 20.8 4.2E+02 0.014 24.1 8.9 93 21-116 173-271 (503)
392 3rih_A Short chain dehydrogena 20.7 3.6E+02 0.012 22.3 8.3 86 63-152 43-134 (293)
393 1zl0_A Hypothetical protein PA 20.6 3.8E+02 0.013 22.7 7.9 73 80-155 13-98 (311)
394 1ua7_A Alpha-amylase; beta-alp 20.5 62 0.0021 28.9 3.1 31 146-178 67-97 (422)
395 3nbm_A PTS system, lactose-spe 20.4 97 0.0033 21.6 3.5 58 136-200 5-62 (108)
396 1umd_B E1-beta, 2-OXO acid deh 20.4 1.6E+02 0.0054 25.1 5.6 23 154-178 242-264 (324)
397 2jg5_A Fructose 1-phosphate ki 20.4 3.6E+02 0.012 22.2 10.5 54 121-177 108-163 (306)
398 3vc3_A Beta-cyanoalnine syntha 20.4 1.6E+02 0.0056 25.3 5.7 53 62-115 89-141 (344)
399 1qs0_B 2-oxoisovalerate dehydr 20.4 1.6E+02 0.0055 25.2 5.7 26 106-131 241-266 (338)
400 2jg1_A Tagatose-6-phosphate ki 20.3 3.9E+02 0.013 22.5 8.5 38 137-177 147-185 (330)
401 4h3z_A TRNA (guanine-N(1)-)-me 20.2 1.2E+02 0.004 25.2 4.3 32 137-174 106-137 (276)
402 3ezl_A Acetoacetyl-COA reducta 20.2 3.3E+02 0.011 21.6 8.6 83 63-149 15-103 (256)
403 2vt1_B Surface presentation of 20.2 61 0.0021 22.0 2.2 20 156-177 29-48 (93)
404 1cyg_A Cyclodextrin glucanotra 20.1 73 0.0025 30.6 3.6 36 140-177 98-133 (680)
405 1uok_A Oligo-1,6-glucosidase; 20.0 64 0.0022 30.1 3.2 31 146-178 71-101 (558)
406 2ze0_A Alpha-glucosidase; TIM 20.0 67 0.0023 30.0 3.3 31 146-178 71-101 (555)
407 3bmv_A Cyclomaltodextrin gluca 20.0 73 0.0025 30.6 3.6 37 140-178 103-139 (683)
No 1
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=100.00 E-value=1.5e-44 Score=334.36 Aligned_cols=343 Identities=25% Similarity=0.426 Sum_probs=289.9
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
.+...+++.|||.++++++++++.+....+.++.+.....++++++++++|.+.++.+++++||++++..++.+++.+||
T Consensus 10 ~~~~~~~~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd 89 (411)
T 3nnk_A 10 NPPSRLLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGD 89 (411)
T ss_dssp CCCCCEEESSSCCCCCHHHHHHHTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTC
T ss_pred CCccceeecCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCC
Confidence 45578999999999999999999987666666667788999999999999998766688999999999999999999999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
+|++..++|++..+...++..|++++.++.+.++.+|++++++++++ +++++|++++++||||.+.|+++|.++|++
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 166 (411)
T 3nnk_A 90 KVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKR---IRPRLLLTVQGDTSTTMLQPLAELGEICRR 166 (411)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred EEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhh---CCCeEEEEeCCCCCcceeccHHHHHHHHHH
Confidence 99999999988655577888999999999988888999999999985 267999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC------------------C
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK------------------S 227 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~------------------~ 227 (367)
+|+++|+|++++.+..+++....++|++++|+||++.++.|+|++++++++++++.... .
T Consensus 167 --~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~ 244 (411)
T 3nnk_A 167 --YDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMI 244 (411)
T ss_dssp --HTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCC
T ss_pred --cCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCC
Confidence 99999999999998888888777899999999999888999999999999988877543 1
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
...+.+.......+....+..++++...+.++.++++.+.++|+++++++..++++++.+.|+++|+++..+.. .....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~ 323 (411)
T 3nnk_A 245 YSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLK-HKMNN 323 (411)
T ss_dssp SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG-GBCSS
T ss_pred cccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcc-ccccc
Confidence 22233333332222222334667899999999999999988899999999999999999999999888776532 23556
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~ 354 (367)
++++.+|++.+..++.+.|.+++||.+++|+.+..++++||++++..
T Consensus 324 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~ 370 (411)
T 3nnk_A 324 VLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYN 370 (411)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCc
Confidence 78888877788899999998777999999987767789999975543
No 2
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=1e-43 Score=329.29 Aligned_cols=349 Identities=26% Similarity=0.457 Sum_probs=291.5
Q ss_pred CCCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC
Q 017726 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
.|.+.+.+++.|+|.++++++.+++.+....+..+.+.+...++++++++++|.+++..+++++|+++++..++.+++.+
T Consensus 6 ~~~~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~ 85 (416)
T 3isl_A 6 ELCTPLRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEP 85 (416)
T ss_dssp CCCCCCCEECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCT
T ss_pred ccCcccceeecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCC
Confidence 35677889999999999999999999865555555667889999999999999987654558899999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
||+|+++.++|++..+...++..|++++.++.+.++.+|++++++++++ +++++|++++++||||.+.|+++|.++|
T Consensus 86 gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~ 162 (416)
T 3isl_A 86 EDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKK---VKPKIVAMVHGETSTGRIHPLKAIGEAC 162 (416)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCHHHHHHH
T ss_pred CCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhh---CCCcEEEEEccCCCCceecCHHHHHHHH
Confidence 9999999999988656677888999999999998888999999999984 2569999999999999999999999999
Q ss_pred HhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC-----------------
Q 017726 164 DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK----------------- 226 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~----------------- 226 (367)
++ +|+++|+|++|+.+..+.+....++|++++|+||++.|+.|+|++++++++++++....
T Consensus 163 ~~--~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~g 240 (416)
T 3isl_A 163 RT--EDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSG 240 (416)
T ss_dssp HH--TTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------
T ss_pred HH--cCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccC
Confidence 99 99999999999988888888777899999999999888999999999999998887532
Q ss_pred ---CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 017726 227 ---SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303 (367)
Q Consensus 227 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 303 (367)
....+.+...+........+..++++...+.++.++++.+.++|++++++++.++++++.+.|++.|+++..+.. .
T Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~ 319 (416)
T 3isl_A 241 NRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDS-C 319 (416)
T ss_dssp CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG-G
T ss_pred CCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCcc-c
Confidence 122233333333322233334667899999999999999998899999999999999999999999888877533 2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
..+.++++.++++.+..++.+.|.+++||.+.+|..+..++++||+++...+.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e 374 (416)
T 3isl_A 320 KMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKE 374 (416)
T ss_dssp BCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHH
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHH
Confidence 4456788888767888999999987779999998876667899999866555444
No 3
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=100.00 E-value=2.1e-43 Score=324.57 Aligned_cols=344 Identities=27% Similarity=0.381 Sum_probs=289.0
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG 84 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g 84 (367)
+...+.+++.|||.++++++++++.+....+..+.+.....+++++++++++.+.++++++++||++++..++.+++.+|
T Consensus 19 ~~~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~g 98 (393)
T 3kgw_A 19 LSVPTRLLLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPG 98 (393)
T ss_dssp CCCCCCEECSSSCCCCCHHHHHHTTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTT
T ss_pred CCCccceeccCCCCCCCHHHHHHhcccccCcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCC
Confidence 44567899999999999999999998665566666678889999999999999876669999999999999999999999
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
|+|+++.++|++..+...++..|.+++.++.+.++.+|++++++++++ +++++|++++++||||.+.|+++|.++|+
T Consensus 99 d~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 175 (393)
T 3kgw_A 99 DSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ---HKPVLLFLVHGESSTGVVQPLDGFGELCH 175 (393)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred CEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh---CCCcEEEEeccCCcchhhccHHHHHHHHH
Confidence 999999998887655677888999999999988888999999999985 26799999999999999999999999999
Q ss_pred hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC--ceeechHHHHHHhh
Q 017726 165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV--RVFFDWKDYIKFYN 242 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 242 (367)
+ +|+++|+|++|+.+..+++....++|++++|+||+++|+.|+|++++++++++++...... .++.+.......+.
T Consensus 176 ~--~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
T 3kgw_A 176 R--YQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWG 253 (393)
T ss_dssp H--TTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTT
T ss_pred H--cCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhh
Confidence 9 9999999999998887777777789999999999998899999999999999888754332 23333333222221
Q ss_pred ---cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCH
Q 017726 243 ---LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 243 ---~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
...+..++++...++++.++++.+.+++++++.+++.++++++.+.|+++|+++..+......+.++++.++++.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 3kgw_A 254 CEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNW 333 (393)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBCH
T ss_pred hccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCCH
Confidence 12234567888888999999999888889999999999999999999999888875544445666778888777788
Q ss_pred HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
.++.++|.+++||.+.+|..+..++++||++++.
T Consensus 334 ~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~ 367 (393)
T 3kgw_A 334 RDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 367 (393)
T ss_dssp HHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGG
T ss_pred HHHHHHHHHhCCEEEeCCcccCCCCEEEEEeccc
Confidence 9999999877799999987766778999997564
No 4
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=1e-42 Score=320.14 Aligned_cols=353 Identities=25% Similarity=0.393 Sum_probs=284.1
Q ss_pred CCCCCCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
|+|-.-....|++.++|.++++.+++++.+....+.++.......++++.+++++|.++ +++++|+||++++..++.++
T Consensus 1 ~~fp~~~~~~yl~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 1 MRYPEHADPVITLTAGPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLSN-KPVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp CCCCTTSCCSEECSSSCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCSS-CCEEESSCTHHHHHHHHHHH
T ss_pred CCcccCCCcceeecCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhCCCC-CEEEEeCCchHHHHHHHHHh
Confidence 45666667899999999999999999999977665555666788999999999999874 45999999999999999998
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
+.+||+|+++.++|++..+...++..|.+++.++.+.++.+|++++++++++. +++++|++++++||||.+.|+++|.
T Consensus 80 ~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~ 157 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH--PEITVVSVCHHDTPSGTINPIDAIG 157 (392)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC--TTCCEEEEESEEGGGTEECCHHHHH
T ss_pred cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC--CCCcEEEEeccCCCCceeccHHHHH
Confidence 89999999999999886555666778999999999887889999999999642 3679999999999999999999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC-Cc-eeechHHHH
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VR-VFFDWKDYI 238 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 238 (367)
++|++ +|+++|+|++|+.+..+++....++|++++|+||++.|+.|+|++++++++++++..... .+ .+.++....
T Consensus 158 ~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 235 (392)
T 2z9v_A 158 ALVSA--HGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWE 235 (392)
T ss_dssp HHHHH--TTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGT
T ss_pred HHHHH--cCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHH
Confidence 99999 999999999999887766666667899999999999888999999999999887764321 00 112211111
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
..+....+..++++...++++.++++.+.+.|++++++++.++++++.+.|+++|+++..+.+....+.+++++++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (392)
T 2z9v_A 236 NAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVD 315 (392)
T ss_dssp TTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCC
T ss_pred hhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCC
Confidence 11111122356788888888889999988888899999999999999999998888776633222356678888866678
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHH
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVM 358 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~ 358 (367)
..++.++|.+++||.+.+|..+..+.++||++++ ..+.++
T Consensus 316 ~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~ 356 (392)
T 2z9v_A 316 EKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIY 356 (392)
T ss_dssp HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHH
T ss_pred HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHH
Confidence 8899999987679999988765556789999755 555443
No 5
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=2e-42 Score=317.09 Aligned_cols=342 Identities=30% Similarity=0.464 Sum_probs=282.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
+.+++.|||.++++++++++.+....+.++...+...++++++++++|.+.+ +++++++||++++. ++.+++.+||+|
T Consensus 2 ~~~~~~~gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~v 80 (384)
T 3zrp_A 2 DKLLLHVGPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKI 80 (384)
T ss_dssp ----CCSSCSCCCHHHHHHTTCCSCCTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEE
T ss_pred CceeccCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEE
Confidence 4678999999999999999999776666666778899999999999999863 56999999999999 999999999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
+++.++|++..+...++..|.+++.++.+.++.+|++++++++++ .++++|++++++||||.+.|+++|.++|++
T Consensus 81 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~-- 155 (384)
T 3zrp_A 81 LVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK---SEYKLVALTHVETSTGVREPVKDVINKIRK-- 155 (384)
T ss_dssp EEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH---SCEEEEEEESEETTTTEECCHHHHHHHHGG--
T ss_pred EEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh---CCCcEEEEeCCCCCCceECcHHHHHHHHHh--
Confidence 999999988666667788899999999998888999999999985 267999999999999999999999999999
Q ss_pred CCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHh-ccCCCCceeechHHHH---HHhhc
Q 017726 168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS-KTAKSVRVFFDWKDYI---KFYNL 243 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~ 243 (367)
+|+++|+|++|+.+..+.+....++|++++|+||+++|+.|+|++++++++++++ .+.....++.+...+. ..++.
T Consensus 156 ~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (384)
T 3zrp_A 156 YVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEE 235 (384)
T ss_dssp GEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHT
T ss_pred cCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcc
Confidence 9999999999998888777777789999999999998889999999999998888 5544444444433332 33333
Q ss_pred CCccCC-CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 244 GTFWPY-TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 244 ~~~~~~-~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
+..+++ +++...+.++.++++.+.+.+++++++++.++++++.+.|+++|+++..+.+....+.++++.++. .+..++
T Consensus 236 ~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 314 (384)
T 3zrp_A 236 GKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-ADPQKV 314 (384)
T ss_dssp TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SCHHHH
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CCHHHH
Confidence 222233 788888899999999998888999999999999999999999988887764333466677888854 788899
Q ss_pred HHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.|.++ ||.+.+|..... +++||++....+.+|+
T Consensus 315 ~~~l~~~-gi~v~~g~~~~~-~~iRi~~~~~~~~e~i 349 (384)
T 3zrp_A 315 LAGTVNE-GVEFAPGVHPAF-KYFRIGHMGWVTPNDA 349 (384)
T ss_dssp HHHHHTT-TCCCEECCCTTC-CEEEEECCSSCCHHHH
T ss_pred HHHHHHC-CEEEecCCCCCc-CEEEEeccccCCHHHH
Confidence 9999866 999998763222 7899998776665443
No 6
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=100.00 E-value=8.9e-43 Score=318.70 Aligned_cols=341 Identities=21% Similarity=0.326 Sum_probs=281.4
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHHccCCCCCe
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
...+++.|||.++|+++++++.+....++++.+.+..+++++++++++|.+.+ +.+++++||++++..++.+++.+||+
T Consensus 18 ~~~~~~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~ 97 (376)
T 3f0h_A 18 QGMLNFTVGPVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDK 97 (376)
T ss_dssp SSCEECSSSSCCCCHHHHHHHTSCCCCCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCC
T ss_pred cCceeecCCCCCCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCe
Confidence 35688999999999999999999766666666778889999999999999754 43455899999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|++..+++++..+...+...|.+++.++.+.++.+|+++++++++ +++++|++++++||||.+.|+++|.++|++
T Consensus 98 vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~- 172 (376)
T 3f0h_A 98 VLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN----QNFTGLLVNVDETSTAVLYDTMMIGEFCKK- 172 (376)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT----SCCCEEEEESEETTTTEECCHHHHHHHHHH-
T ss_pred EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc----cCceEEEEecccCCcceecCHHHHHHHHHH-
Confidence 999999888866556778889999999998888899999998776 578999999999999999999999999999
Q ss_pred CCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
+|+++|+|++++.+..+++....++|++++|+||+++++.|+|++++++++++++.......++.++..+......+.
T Consensus 173 -~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (376)
T 3f0h_A 173 -NNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQ- 250 (376)
T ss_dssp -TTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTC-
T ss_pred -cCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCC-
Confidence 999999999999988877776667899999999999878999999999999988876554444455444443333221
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR 325 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (367)
++++++...++++.++++++.++ ++++++++..++++++.+.|+++|+++..+. ....++.+. +++.+..++.+.
T Consensus 251 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~l~~~ 326 (376)
T 3f0h_A 251 TPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSES---PANGVTSVH-PTTANAYDIFLK 326 (376)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSS---BBTTEEEEE-ESSSCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccc---cCceEEEEe-CCCCCHHHHHHH
Confidence 36678888888899999999888 5899999999999999999998887665542 233445454 356788999999
Q ss_pred HHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
|.+++||.+++|..+..++++|+++....+.+|+
T Consensus 327 l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i 360 (376)
T 3f0h_A 327 LKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDN 360 (376)
T ss_dssp HHHHSSEECEECCGGGTTTCEEEECCSSCCHHHH
T ss_pred HHHhCCEEEecCccccCCCEEEEecCCCCCHHHH
Confidence 9877799999987656677899998766655443
No 7
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=5.9e-42 Score=315.14 Aligned_cols=353 Identities=29% Similarity=0.424 Sum_probs=282.1
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
..++.|++.+||.++++.+++++.+....++.+.......++++.+++++|.++++++++++||++|+..++.+++.+||
T Consensus 16 ~~~~~~~~~~g~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd 95 (393)
T 2huf_A 16 VTPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGD 95 (393)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTC
T ss_pred CCCCeEEecCCCCCCCHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCC
Confidence 34588999999999999999999987665544445678899999999999997654699999999999999999889999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
+|+++.++|++..+...++..|.+++.++.+.++.+|++++++++++ .++++|++++++||||.+.|+++|.++|++
T Consensus 96 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~~~~~ 172 (393)
T 2huf_A 96 VILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI---HKPSVLFLTQGDSSTGVLQGLEGVGALCHQ 172 (393)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc---cCCcEEEEEccCCCccccCCHHHHHHHHHH
Confidence 99999999988655556677899999999987788999999999984 156999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC--CCceeechHHHHHHhhc
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (367)
+|+++|+|++++++..+.++...++|++++|+||+++|+.|+|++++++++++++.... ...++.+.......+..
T Consensus 173 --~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
T 2huf_A 173 --HNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGC 250 (393)
T ss_dssp --TTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTC
T ss_pred --cCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhcc
Confidence 99999999999988776666666799999999999888899999999999988876542 11222222111111110
Q ss_pred ---CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 244 ---GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 244 ---~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
..+..++++...++++.++++.+.++++++++++..++++++.+.|+++|+++..+.. .+.+.+++++++.+.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 329 (393)
T 2huf_A 251 FGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPK-DRLSTVTTIKVPQGVDWL 329 (393)
T ss_dssp SSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCTTEEEEECCTTCCHH
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcc-ccCCcEEEEEcCCCCCHH
Confidence 1223457888888888889998887788999999999999999999998887766432 134557788886567888
Q ss_pred HHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC-CH--HHHHHhhh
Q 017726 321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL-NE--VMFNFQLL 364 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~-~~--~~~~~~~l 364 (367)
++.++|.+++||.+.+|..+..+.++||++++.. ++ .+...+.|
T Consensus 330 ~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l 376 (393)
T 2huf_A 330 KAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVF 376 (393)
T ss_dssp HHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHH
Confidence 9999998767999998876555678999985633 33 34444444
No 8
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=9e-42 Score=314.20 Aligned_cols=342 Identities=25% Similarity=0.419 Sum_probs=277.0
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
...+.+++.|+|.++++.+.+++.+....++++.+.....++++.+++++|.++++++++++||++++..++.+++.+||
T Consensus 15 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd 94 (396)
T 2ch1_A 15 IIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGD 94 (396)
T ss_dssp CCCCCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTC
T ss_pred CCCcceeecCCCCCCCHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCC
Confidence 34577999999999999999999987654444444466899999999999998753599999999999999999899999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
+|+++.++|+++.+...++..|++++.++.+.++.+|++++++++++. ++++|++++++||||.++|+++|.++|++
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 171 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELH---QPKCLFLTHGDSSSGLLQPLEGVGQICHQ 171 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred eEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhC---CCCEEEEECCCCCCceecCHHHHHHHHHH
Confidence 999999999887544577889999999999888889999999999841 56999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC--CCceeechHHHHHHhhc
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (367)
+|+++|+|++|+++..++++...++|++++|+||++.++.|+|+++++++.++.+.... ...++.+...+...+..
T Consensus 172 --~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (396)
T 2ch1_A 172 --HDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGC 249 (396)
T ss_dssp --TTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTC
T ss_pred --cCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhh
Confidence 99999999999988777777777789999999999988999999999999888775432 12222232222221111
Q ss_pred ---CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 244 ---GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 244 ---~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
..+..++++...+.++.++++.+.+.+++++++++.++++++.+.|+++|+++..+......+.+++++++.+.+..
T Consensus 250 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (396)
T 2ch1_A 250 YDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWW 329 (396)
T ss_dssp SSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHH
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCCHH
Confidence 12235678888888888899887777889999999999999999999988888765432344557888886677889
Q ss_pred HHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
++.++|.+++||.+.+|..+..++++||++++
T Consensus 330 ~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~ 361 (396)
T 2ch1_A 330 KVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMG 361 (396)
T ss_dssp HHHHHHHHHHCBCCBCCCGGGTTTEEEEECCG
T ss_pred HHHHHHHHhCCEEEecCccccCCCEEEEECCC
Confidence 99999987679999988765567789999855
No 9
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=100.00 E-value=5.3e-42 Score=310.65 Aligned_cols=337 Identities=26% Similarity=0.377 Sum_probs=273.3
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
++|.|||.++++.+++++.+....++++...+...++++++++++|.+ +++++++|+||++|+..++.+++. |+|++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~ 79 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLV 79 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCTTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEE
T ss_pred ccCCCCCCCCCHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEE
Confidence 689999999999999999998766666666677899999999999986 345699999999999999988776 88999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
+.++|++..+...++..|++++.++.+.++.+|+++++++++++ ++++|++++++||||.+.|+++|.++|++ +|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~ 154 (353)
T 2yrr_A 80 LVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRR---RYRMVALVHGETSTGVLNPAEAIGALAKE--AG 154 (353)
T ss_dssp EECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHS---CCSEEEEESEETTTTEECCHHHHHHHHHH--HT
T ss_pred EcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhC---CCCEEEEEccCCCcceecCHHHHHHHHHH--cC
Confidence 99989886455667888999999999888889999999999851 56999999999999999999999999999 99
Q ss_pred cEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
+++|+|++|+++..+.+....++|++++|+||++.|++|+|++++++++++++.. ....+.+........+ ..+..+
T Consensus 155 ~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~-~~~~~~ 231 (353)
T 2yrr_A 155 ALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG--KRGWYLDLARVAEHWE-RGGYHH 231 (353)
T ss_dssp CEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC--CSCSTTCHHHHHHHHT-TCCCSS
T ss_pred CeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc--CCCccccHHHHhhhhh-cCCCCC
Confidence 9999999998877666655557899999999999888899999999999887752 1122233222111111 122355
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
+++...+.++.++++.+.+.|++++++++.++++++.+.|+++|+++..+. ...+.+++++++++.+..++.+.|.++
T Consensus 232 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (353)
T 2yrr_A 232 TTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKA--SPLPTVLVVRPPEGVDADRLVRALYAE 309 (353)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSS--SBCTTEEEEECCTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCc--cCCCeEEEEECCCCCCHHHHHHHHHHC
Confidence 788888888888999988888999999999999999999998888776642 135667788886677888999999766
Q ss_pred CCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 330 YNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 330 ~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
||.+.+|..+..++++|++++...+.+|+.
T Consensus 310 -gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 339 (353)
T 2yrr_A 310 -GVAVAGGIGPTRGQVLRLGLMGEGARREAY 339 (353)
T ss_dssp -TEECEECCGGGTTTCEEEECSGGGSCHHHH
T ss_pred -CEEEeCCccccCCCeEEEecCccCCHHHHH
Confidence 999998876655678999986655544443
No 10
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-41 Score=310.01 Aligned_cols=346 Identities=29% Similarity=0.463 Sum_probs=282.9
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
..+.|++.++|.++++++.+++.+....++++......+++++.+++++|.+.++++++++||++|+..++.+++.+||+
T Consensus 18 ~~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~ 97 (386)
T 2dr1_A 18 KPKYKLFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGK 97 (386)
T ss_dssp SCCSEECCSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCE
T ss_pred CccceeecCCCcCCcHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCe
Confidence 34689999999999999999999876555444456788999999999999973456999999999999999998999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|+++.++|++..+...++..|++++.++.+.++.+|++++++++++. +++++|++++++||||.+.|+++|.++|++
T Consensus 98 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~- 174 (386)
T 2dr1_A 98 VLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKN--PDVEAVTITYNETSTGVLNPLPELAKVAKE- 174 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHC--TTCCEEEEESEETTTTEECCHHHHHHHHHH-
T ss_pred EEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcC--CCCcEEEEEeecCCcchhCCHHHHHHHHHH-
Confidence 99999998875455677889999999999888889999999999642 468999999999999999999999999999
Q ss_pred CCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhh-cCC
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN-LGT 245 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 245 (367)
+|+++|+|++|+.+..+.+....++|++++|+||+++++.|+|++++++++++++.......++.++......+. .+
T Consensus 175 -~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (386)
T 2dr1_A 175 -HDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKE- 252 (386)
T ss_dssp -TTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHS-
T ss_pred -cCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCC-
Confidence 999999999999887766666668899999999999877789999999999888765333334444433322222 11
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
+..++++...+.++.++++.+.+. ++++++++++++++++.+.|+++|+++..+.. ...+.++++.++.+.+..++.+
T Consensus 253 ~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 331 (386)
T 2dr1_A 253 STPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPG-HESPTITAVLTPPGIKGDEVYE 331 (386)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTT-CBCSSEEEEECCTTCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCcc-ccCCceEEEEcCCCCCHHHHHH
Confidence 124568888888888899988887 78999999999999999999998887776532 2356678898876678889999
Q ss_pred HHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 325 RAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+|.++ ||.+.+|..+..+.++||++....+.+++
T Consensus 332 ~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i 365 (386)
T 2dr1_A 332 AMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDI 365 (386)
T ss_dssp HHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHH
T ss_pred HHHHC-CeEEecCccccCCCEEEEECCCCCCHHHH
Confidence 99877 99999987655567899998865655544
No 11
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=1.8e-41 Score=307.26 Aligned_cols=329 Identities=25% Similarity=0.401 Sum_probs=270.0
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+++.|||.++++.+++++.+....+.++...+...++++.+++++|.++ +++++++||++|+..++.+++.+||+|+++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~ 81 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEG-EVLILTGSGTLAMEALVKNLFAPGERVLVP 81 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSS-EEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccccCCCCCCCHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHhCCCC-ceEEEcCchHHHHHHHHHhccCCCCeEEEE
Confidence 7899999999999999999987666666666788999999999999975 569999999999999999989999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC--
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH-- 168 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~-- 168 (367)
.++|++..+...++..|.+++.++.+.++.+|++++++ + ++++|++++++||||.+.|+++|.++|++ +
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~ 152 (352)
T 1iug_A 82 VYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---E----GYAGLLLVHSETSTGALADLPALARAFKE--KNP 152 (352)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---S----SCSEEEEESEETTTTEECCHHHHHHHHHH--HCT
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---c----CCcEEEEEEecCCcceecCHHHHHHHHHh--hCC
Confidence 99999875445667789999999998777789888766 2 57999999999999999999999999999 7
Q ss_pred CcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 169 PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
|+++|+|++|+++..+++....++|++++|+||++.++.|+|+++++++.++++.. ..++.++.........+ +..
T Consensus 153 ~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~ 228 (352)
T 1iug_A 153 EGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP---RGYYLDLARELKAQKEG-ESA 228 (352)
T ss_dssp TCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC---CSSTTCHHHHHHHHTTT-CCS
T ss_pred CCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC---CCceeeHHHHHhhcccC-CCC
Confidence 99999999999887766666567899999999999888899999999998877654 23333333222222222 235
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHh
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
++++...+.++.++++.+.+. +++++++++++++++.+.|+++|+++..+. ..+.+++++++++.+..++.++|.+
T Consensus 229 ~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 304 (352)
T 1iug_A 229 WTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKR---FSPAVAAFYLPEGVPYARVKEAFAQ 304 (352)
T ss_dssp SCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSS---BCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCcccccc---cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 678888888888888887666 888999999999999999999888776642 2556788888656788899999976
Q ss_pred hCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 329 RYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 329 ~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
+ ||.+.+|..+..++++||++....+.++
T Consensus 305 ~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~ 333 (352)
T 1iug_A 305 R-GAVIAGGQGPLKGKVFRLSLMGAYDRYE 333 (352)
T ss_dssp T-TEECEECCGGGTTTEEEECCCSSCCHHH
T ss_pred C-CEEEEeCCCccCCCEEEEEccccCCHHH
Confidence 6 9999988755556789999876555443
No 12
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=7.3e-41 Score=307.85 Aligned_cols=351 Identities=30% Similarity=0.436 Sum_probs=278.9
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.|++.++|.++++++++++.+....+.++...+..+++++.+++++|.++++++++++||++|+..++.+++.+||+|
T Consensus 33 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~V 112 (393)
T 1vjo_A 33 PSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVV 112 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred ccceeccCCCCCCCHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEE
Confidence 36799999999999999999999765544444557788999999999999754259999999999999999989999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
+++.++|++..+...++..|++++.++.+.++.+|++++++++++. ++++|++++++||||.+.|+++|.++|++
T Consensus 113 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~-- 187 (393)
T 1vjo_A 113 LIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH---RPAILALVHAETSTGARQPLEGVGELCRE-- 187 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHH--
T ss_pred EEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC---CceEEEEeccCCCcceeccHHHHHHHHHH--
Confidence 9999998874455667888999999999888889999999999841 56899999999999999999999999999
Q ss_pred CCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC--CCceeechHHHHHHhhcCC
Q 017726 168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 245 (367)
+|+++|+|++|+++..++++...++|++++|+||+++++.|+|++++++++++++.... ...++.+.. +...+....
T Consensus 188 ~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 266 (393)
T 1vjo_A 188 FGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMN-LLGKYWGSE 266 (393)
T ss_dssp HTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH-HHHHHHSTT
T ss_pred cCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcH-hhhhhhccC
Confidence 99999999999988777777667889999999999988888999999999988775321 111222211 111111111
Q ss_pred ccCC-CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 246 FWPY-TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 246 ~~~~-~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
.+.+ +++...+.++.++++.+.+.+++++++++.++++++.+.|+++|+++..+.. .....++++.++.+.+..++.+
T Consensus 267 ~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 345 (393)
T 1vjo_A 267 RVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKE-YRLPTLTTVCIPDGVDGKAVAR 345 (393)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCSSEEEEECCTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCcc-ccCCcEEEEEcCCCCCHHHHHH
Confidence 1233 6888888888999998877778999999999999999999998888776532 2344577888866778889999
Q ss_pred HHHhhCCeEEccCCCCCCCcEEEEeecCCCC-H--HHHHHhhhh
Q 017726 325 RAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN-E--VMFNFQLLF 365 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~-~--~~~~~~~l~ 365 (367)
.|.+++||.+.+|..+..++++||++.+... + .+...++|.
T Consensus 346 ~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~ 389 (393)
T 1vjo_A 346 RLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALE 389 (393)
T ss_dssp HHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHH
Confidence 9987679999998766567889999655332 2 344444443
No 13
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=1.8e-41 Score=308.36 Aligned_cols=341 Identities=20% Similarity=0.269 Sum_probs=276.6
Q ss_pred CcccccCCCCCChHHHHHHH----ccCC--CCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAM----NRNN--EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS 82 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~----~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~ 82 (367)
+.++|.|||.++|+++++++ .+.. ..++++.+.+..+++++.+++++|.++++++++++|+++|+..++.++..
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~ 83 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE 83 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC
Confidence 57899999999999999444 4433 23455566788899999999999997666799999999999999999887
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL 162 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~ 162 (367)
+ .+++..+++++..+...++..|++++.++.+.++.+|+++++ ++ +++|+|++++++||||.+.|+++|.++
T Consensus 84 ~--~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~----~~~~~v~~~~~~nptG~~~~l~~i~~l 155 (362)
T 3ffr_A 84 K--KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP----ADAEIICLTHNETSSGVSMPVEDINTF 155 (362)
T ss_dssp S--EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC----TTCCEEEEESEETTTTEECCHHHHTTS
T ss_pred C--cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc----CCccEEEEEcCCCCcceeCCHHHHHHH
Confidence 7 667777778886565677888999999999888889999998 44 578999999999999999999999999
Q ss_pred HHhcCC-CcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC----CceeechHHH
Q 017726 163 LDEYRH-PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS----VRVFFDWKDY 237 (367)
Q Consensus 163 ~~~~~~-~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 237 (367)
|++ + |+++++|++|+.+..+.+... +|++++|+||++++++|+|++++++++++++..... ...++++...
T Consensus 156 a~~--~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 231 (362)
T 3ffr_A 156 RDK--NKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSM 231 (362)
T ss_dssp GGG--STTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHH
T ss_pred HHh--CCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHH
Confidence 999 9 999999999998887766654 899999999999879999999999999887765432 2333444444
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
....+.+ ...++++...+.++.++++.+.+.|+++++++..++++++.+.|+++ |+++..+.+......++++.+++
T Consensus 232 ~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~- 309 (362)
T 3ffr_A 232 LEKARVN-QTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM- 309 (362)
T ss_dssp HHHHTTT-CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-
T ss_pred HHHhhcC-CCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-
Confidence 4433332 23667899888999999998888889999999999999999999998 88887754444566788888864
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH--HHhhhh
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF--NFQLLF 365 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~--~~~~l~ 365 (367)
+..++.+.|.++ ||.+.+|..+..++++||++....+++++ ..++|+
T Consensus 310 -~~~~~~~~l~~~-gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~ 358 (362)
T 3ffr_A 310 -LPGEINKILEPF-DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLK 358 (362)
T ss_dssp -CHHHHHHHHGGG-TEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 788999999877 99999988776778999998776655443 344443
No 14
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=3.6e-40 Score=296.41 Aligned_cols=327 Identities=16% Similarity=0.135 Sum_probs=261.9
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhH
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTG 71 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~ 71 (367)
.|+.+.++|.|||+++|++|++++.+... .|++..+.+..+++|+.+++++|++++++|+| |+|||+
T Consensus 1 ~~~~~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~ 80 (361)
T 3m5u_A 1 SNAMRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASL 80 (361)
T ss_dssp ---CCCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred CCccceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHH
Confidence 36789999999999999999999998764 35556678999999999999999986656888 999999
Q ss_pred HHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCC--CCHHHHHHHHhccCCCCccEEEEEecCCC
Q 017726 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG--AKLDVLASKLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 72 al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~d~e~l~~~i~~~~~~~~~lv~~~~~~n~ 149 (367)
++++++.+++ +||++++...++++++|...++..|+++..++.+.++. ++++. + ++ +++++|.+++.+|.
T Consensus 81 a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~----~~t~lv~~~~~e~~ 152 (361)
T 3m5u_A 81 QFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FS----DNADYAYICSNNTI 152 (361)
T ss_dssp HHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CC----TTSSEEEEESEETT
T ss_pred HHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cC----CCCCEEEEeCCCCC
Confidence 9999999888 88988766677888888788888999999999987764 56666 3 65 57799999999999
Q ss_pred ccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 150 tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
||++.|. +++ +|+++++|++++++..++|+.. +|++++|+||++ ||+|+|++++++++.+++.+...+
T Consensus 153 tG~~~~~-----i~~---~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~p- 220 (361)
T 3m5u_A 153 YGTQYQN-----YPK---TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNA-GISGLSCIFIRKDMLERSKNKQIP- 220 (361)
T ss_dssp TTEECSS-----CCC---CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTS-SCTTCEEEEEEHHHHHHHHTCCCC-
T ss_pred cceeCCc-----ccc---cCCEEEEEcccccCCCCCCccc--CCEEEEechhcc-CCCccEEEEEcHHHHhhhcCCCCC-
Confidence 9999772 343 5999999999999999999984 799999999999 799999999999998888752222
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccCCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWFSD 306 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~ 306 (367)
.+.++..... .+ ..++|+++..++++.++++++.++ |++++.++.+++++++++.|++++ + ....+ +..++.
T Consensus 221 ~~~~~~~~~~---~~-~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~-~~~rs~ 295 (361)
T 3m5u_A 221 SMLNYLTHAE---NQ-SLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-KKDRSL 295 (361)
T ss_dssp GGGCHHHHHH---TT-TCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC-GGGBCS
T ss_pred ceeehHHHhh---cC-CCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC-HHHcCC
Confidence 2344333221 12 235789999999999999999999 899999999999999999999985 5 44332 334666
Q ss_pred ceEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 307 TVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 307 ~~~~~~~~~--~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.++.|.+++ +.+ .++.+.|. ++||.++.|.... +.+|+|++++++.+|++
T Consensus 296 ~ivsf~~~~~~~~~-~~~~~~L~-~~gI~~~~g~~~~--g~iRiS~~~~~t~edId 347 (361)
T 3m5u_A 296 MNVSFNIAKNKDLE-PLFVKEAE-EAGMIGLKGHRIL--GGIRASIYNALNLDQVK 347 (361)
T ss_dssp SEEEEEESSCTTHH-HHHHHHHH-HTTEECCBCCTTT--CSEEEECCTTSCHHHHH
T ss_pred eEEEEECCCchhhh-HHHHHHHH-HCCCEEecCCCcc--CeEEEEccCCCCHHHHH
Confidence 789999864 233 47777775 5599998876543 34999999887766554
No 15
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=2.1e-39 Score=297.19 Aligned_cols=352 Identities=26% Similarity=0.450 Sum_probs=272.7
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCC---CCceEEecCChhHHHHHHHHccC
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT---SGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
|-+.+.++|.|||.++++++++++.+....++++.......++++.++++++.. +++++++++||++++..++.++.
T Consensus 1 ~~~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~ 80 (385)
T 2bkw_A 1 MTKSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI 80 (385)
T ss_dssp --CCCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS
T ss_pred CCCccceeecCCCcCchHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHh
Confidence 335677999999999999999999997665555555567788999999999875 23569999999999999999887
Q ss_pred ---CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH
Q 017726 82 ---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 82 ---~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
.+||+|+++.+++++..+...++..|++++.++. +.++.+|++++++++++ .++++|++++++||||.+.|++
T Consensus 81 ~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~l~ 157 (385)
T 2bkw_A 81 LSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLK 157 (385)
T ss_dssp CTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH---SCCSEEEEESEETTTTEECCHH
T ss_pred ccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc---CCCCEEEEEccCCCcCeEcCHH
Confidence 8999999887766665444567788999999998 77788999999999985 2579999999999999999999
Q ss_pred HHHHHHHhcCC--CcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHH-HhccC---CCCcee
Q 017726 158 KVRKLLDEYRH--PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE-ASKTA---KSVRVF 231 (367)
Q Consensus 158 ~i~~~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~-~~~~~---~~~~~~ 231 (367)
+|.++|++ + |+++|+|++|+.+..++++...++|++++|+||+++|+.|+|+++++++.++ ++... ....++
T Consensus 158 ~i~~~~~~--~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (385)
T 2bkw_A 158 AISQAIKQ--TSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYF 235 (385)
T ss_dssp HHHHHHHH--HCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCST
T ss_pred HHHHHHHh--hCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCcee
Confidence 99999999 7 9999999999988777676666889999999999988899999999999887 66320 111122
Q ss_pred ech---HHHHHHhhcCC-ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHcCCccccCCCcc-CC
Q 017726 232 FDW---KDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV-EAWGLKNCTQKEEW-FS 305 (367)
Q Consensus 232 ~~~---~~~~~~~~~~~-~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~-~~ 305 (367)
.+. .....+++.++ ...++++...++++.++++.+.+.|+++++++++++++++.+.| +++|+++..+.+.. ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 315 (385)
T 2bkw_A 236 SSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSA 315 (385)
T ss_dssp TCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBC
T ss_pred ecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccC
Confidence 221 11122333321 22457888888889999999888888899999999999999999 77788776543222 34
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEe-ec-----CCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIG-HL-----GHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~-~~~~~iRi~-~~-----~~~~~~~~~~~~l~ 365 (367)
+.++++.+++ ..++.+.|.+ +||.+.+|..+ ....++||+ +. ...++.+...+.|+
T Consensus 316 ~~~~~~~~~~---~~~~~~~l~~-~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~ 378 (385)
T 2bkw_A 316 HGLTAVYVAD---PPDVIAFLKS-HGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 378 (385)
T ss_dssp SSCEEEECSC---HHHHHHHHHH-TTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred CceEEEecCC---HHHHHHHHHH-CCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHH
Confidence 5678888853 7789999965 59999988653 235679999 32 24556565555554
No 16
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=7.8e-39 Score=291.26 Aligned_cols=342 Identities=21% Similarity=0.301 Sum_probs=268.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHH-HHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVP-ALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+.+++.+||.++++++++++.+... ++++.+. ....++++.+++++|.+. .+++++++||++|+..++.+++.+||+
T Consensus 4 ~~~~~~~gp~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~ 82 (366)
T 1m32_A 4 NYLLLTPGPLTTSRTVKEAMLFDSC-TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDK 82 (366)
T ss_dssp -CEECSSSSCCCCHHHHHTTCCCCC-TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCC
T ss_pred ccccccCCCcCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCe
Confidence 4689999999999999999998642 4333344 678899999999999432 246999999999999999998899999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|++..+.+|+..+...++..|++++.++.+.++.+|+++++++++++ +++++|++++++||||.++|+++|.++|++
T Consensus 83 vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~- 159 (366)
T 1m32_A 83 VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD--PTISHIAMVHSETTTGMLNPIDEVGALAHR- 159 (366)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC--TTCCEEEEESEETTTTEECCHHHHHHHHHH-
T ss_pred EEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC--CCeEEEEEecccCCcceecCHHHHHHHHHH-
Confidence 98887666654444667788999999999888889999999999864 257999999999999999999999999999
Q ss_pred CCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC-C
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG-T 245 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 245 (367)
+|+++|+|++|+.+..++++...++|++++|+||+++++.|+|++++++++++++.... ..++.+.......+... .
T Consensus 160 -~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 237 (366)
T 1m32_A 160 -YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHS-RSLSLDLYAQWRCMEDNHG 237 (366)
T ss_dssp -HTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCC-SCSTTCHHHHHHHHHHTTT
T ss_pred -cCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCC-CCccccHHHHHhhhcccCC
Confidence 99999999999988777666666789999999999988888999999999887765421 12222221111111110 1
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC--CCCHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--HINSSEI 322 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 322 (367)
...++++...++++.++++.+.+.| +++++++++++++++.+.|+++|+++..+.. ...+.++++.+++ +.+..++
T Consensus 238 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 316 (366)
T 1m32_A 238 KWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDE-LHSPIITAFYSPEDPQYRFSEF 316 (366)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCSSEEEEECCCCTTCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCch-hcCceEEEEEcCccCCCCHHHH
Confidence 1135788888888999999988887 8899999999999999999998877765421 1355678888865 6678899
Q ss_pred HHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.|.++ ||.+.+|..+ .++++|+++....+++++
T Consensus 317 ~~~l~~~-gi~v~~~~~~-~~~~iRi~~~~~~~~~~i 351 (366)
T 1m32_A 317 YRRLKEQ-GFVIYPGKVS-QSDCFRIGNIGEVYAADI 351 (366)
T ss_dssp HHHHHHT-TEECEECCCS-SSCEEEEECCSSCCHHHH
T ss_pred HHHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHH
Confidence 9999766 9999987654 457899998766554443
No 17
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=1.8e-41 Score=307.63 Aligned_cols=327 Identities=13% Similarity=0.154 Sum_probs=252.3
Q ss_pred CcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWES 75 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~al~~ 75 (367)
++|+|.|||+++|++|++++.++.. .+++..+.+..+++|+.+++++|++++++|+| |+|+|+++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 6899999999999999999998652 24455667788999999999999976556888 6899999999
Q ss_pred HHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC--CCCC-CCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEG-AKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 76 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~-~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++.+++.+||++++...++++.+|...++..| ++..++.+ .++. +++++++.+++ +++++|++++.+|.||+
T Consensus 107 ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~----~~t~lV~~~h~et~tG~ 181 (386)
T 3qm2_A 107 VPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS----DNAAYLHYCPNETIDGI 181 (386)
T ss_dssp HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC----TTCSCEEECSEETTTTE
T ss_pred HHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC----CCCcEEEEECCcCCcCE
Confidence 99998999999998888899988888888889 89999987 4554 78888877776 57799999999999999
Q ss_pred c-ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 153 T-NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 153 ~-~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+ .|+++|. +|+++++|++|+++..++|+.+++ ++++|+||++ ||+|+|++++++++.+++.+.. + .+
T Consensus 182 ~i~pi~~i~-------~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~l-GP~G~g~l~v~~~~~~~~~~~~-p-~~ 249 (386)
T 3qm2_A 182 AIDETPDFG-------PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNI-GPAGLTLVIVREDLLGKAHESC-P-SI 249 (386)
T ss_dssp ECCCCCCCC-------TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTT-CCTTEEEEEEEGGGCSCCCTTS-C-GG
T ss_pred ecCchhhhc-------CCCEEEEEcccccCCCCCCccccC--EEEEeccccc-CCCccEEEEECHHHHhhhcccC-C-cH
Confidence 6 7888773 689999999999999999998765 6779999999 7999999999999876665432 1 12
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 310 (367)
+++.... +.+ ..++|+++..++++.+|++++.++ |++++.++.+++++++++.|+++|+.....++..++..++.
T Consensus 250 ~~~~~~~---~~~-~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~ 325 (386)
T 3qm2_A 250 LDYTVLN---DND-SMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVP 325 (386)
T ss_dssp GCHHHHH---HC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEE
T ss_pred HHHHHHh---hcC-CCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEE
Confidence 3332222 222 125579999999999999999998 79999999999999999999988752222233346777899
Q ss_pred EEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 311 VIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 311 ~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
|.+++ +.+ .++.+.|. ++||.++.|.... +.+|+|++++++.+|++
T Consensus 326 f~~~~~~~~-~~~~~~L~-~~gI~~~~g~~~~--~~iRiS~~~~~t~edId 372 (386)
T 3qm2_A 326 FQLADNTLD-KVFLEESF-AAGLHALKGHRVV--GGMRASIYNAMPIEGVK 372 (386)
T ss_dssp EEESSGGGH-HHHHHHHH-HTTEECCBCCTTT--CSEEEECCTTSCHHHHH
T ss_pred EECCCcccc-HHHHHHHH-HCCCEEeCCCCCc--CeEEEEcCCCCCHHHHH
Confidence 99864 344 57777775 5599998876553 33999998887765544
No 18
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=291.88 Aligned_cols=326 Identities=14% Similarity=0.121 Sum_probs=261.2
Q ss_pred ccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHH
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESAL 77 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~al~~~~ 77 (367)
.+..+.+.++|++|++++.+... .+++..+.+..+++|+.+++++|++++++|+| ++|||+++++++
T Consensus 15 ~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~ 94 (377)
T 3e77_A 15 TENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVP 94 (377)
T ss_dssp CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHH
Confidence 45677889999999999998764 34555678899999999999999987666888 589999999999
Q ss_pred HccCCC--CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 78 TNTLSP--GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 78 ~~~~~~--gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
.+++.+ ||++++...++++.+|...++..|..+..++.+.++..++++++.+++ +++++|.+++.+|.||++.|
T Consensus 95 ~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~----~~t~lV~~~h~et~tG~~~p 170 (377)
T 3e77_A 95 LNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN----PDASYVYYCANETVHGVEFD 170 (377)
T ss_dssp HHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC----TTCSCEEEESEETTTTEECS
T ss_pred HhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC----CCccEEEEeCccCchheEch
Confidence 988755 899999999999988888888889888877876666677777766555 57899999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+ +|++ +|+++++|++++++..++|+.+++ ++++|+||++ ||+|+|++++++++++++.+.. + .++++.
T Consensus 171 i-----i~~~--~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~-p-~~~~~~ 238 (377)
T 3e77_A 171 F-----IPDV--KGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNV-GSAGVTVVIVRDDLLGFALREC-P-SVLEYK 238 (377)
T ss_dssp S-----CCCC--TTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTS-C-GGGCHH
T ss_pred h-----hhcc--CCCEEEEEcccccCCCCCchhhcC--EEEEeccccc-CCCccEEEEEcHHHHhhccCCC-C-chhhHH
Confidence 8 4777 999999999999999999998765 6889999999 7999999999999876655322 1 233333
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
...+ .+ ..++|+++..++++.++++++.++ |++++.++.+++++++++.|+++ |+.+...++..+++.++.|.+
T Consensus 239 ~~~~---~~-~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~ 314 (377)
T 3e77_A 239 VQAG---NS-SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRI 314 (377)
T ss_dssp HHHT---TT-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEE
T ss_pred HHhh---cC-CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEc
Confidence 2222 12 236789999999999999999999 79999999999999999999998 887644344457777789998
Q ss_pred CCCCCH-----HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 314 PSHINS-----SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 314 ~~~~~~-----~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+ ++++ ..+.+.|. ++||.+++|.... +.+|+|++++++.+|++
T Consensus 315 ~-~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~~~--g~iRiS~~~~~t~edId 362 (377)
T 3e77_A 315 G-NAKGDDALEKRFLDKAL-ELNMLSLKGHRSV--GGIRASLYNAVTIEDVQ 362 (377)
T ss_dssp S-STTCCHHHHHHHHHHHH-HTTEESCBCCTTT--CSEEEECCTTSCHHHHH
T ss_pred C-CCCCchhHHHHHHHHHH-HCCcEEeCCCCcC--CEEEEECCCCCCHHHHH
Confidence 5 4332 35666665 4599998876432 34999998887765543
No 19
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=2.6e-37 Score=283.78 Aligned_cols=342 Identities=16% Similarity=0.124 Sum_probs=265.2
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCCC-----C---CC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDY-----R---SP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~---~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
+..++++.+++.+.|+.+++++.+..... . .+ .......++++.+++++|.+++ ++++++||++++..++
T Consensus 15 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~ 93 (390)
T 1elu_A 15 ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN-TITITDNVTTGCDIVL 93 (390)
T ss_dssp TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG-GEEEESSHHHHHHHHH
T ss_pred CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHH-HEEEeCChHHHHHHHH
Confidence 45677888888888888999988754321 1 11 1246788999999999998754 5999999999999999
Q ss_pred Hcc-CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 78 TNT-LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 78 ~~~-~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
.++ +.+||+|+++.++|++.. +...++..|.+++.++.+ .++.+|+++++++++ +++++|++++++||||.
T Consensus 94 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~ 169 (390)
T 1elu_A 94 WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG----PKTRLVILSHLLWNTGQ 169 (390)
T ss_dssp HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC----TTEEEEEEESBCTTTCC
T ss_pred hCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC----CCceEEEEeccccCCce
Confidence 998 899999999999988865 445567789999999986 567789999999887 46799999999999999
Q ss_pred cccHHHHHHHHH----hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC
Q 017726 153 TNNLSKVRKLLD----EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 153 ~~~~~~i~~~~~----~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
+.|+++|.++|+ + +|+++|+|++|+.+..+++....++|++++|+||++.|+.|+|++++++++++++......
T Consensus 170 ~~~~~~i~~l~~~~~~~--~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g 247 (390)
T 1elu_A 170 VLPLAEIMAVCRRHQGN--YPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVG 247 (390)
T ss_dssp BCCHHHHHHHHHHCCSS--SCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCC
T ss_pred ecCHHHHHHHHhhhhhh--cCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCcccc
Confidence 999999999999 7 9999999999998877776666678999999999888888899999999887776643221
Q ss_pred cee---------echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 017726 229 RVF---------FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNC 297 (367)
Q Consensus 229 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 297 (367)
... +++.+...++ ..++++...+.++.++++.+.+.+ +++++++++++++++.+.|+++ |+++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 322 (390)
T 1elu_A 248 WRSITYGAKGEPTGWAEGGKRF-----EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCL 322 (390)
T ss_dssp TTTEEECTTSCEEEECSGGGGG-----CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred CCcccccccCcccccccchHhh-----CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 100 0000000111 234678777888888999888777 8999999999999999999998 88877
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhhc
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLFQ 366 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~~ 366 (367)
.+.+ ..+.++.++++++.+..++.++|. ++||.+.+|. ..+++||++....+.+ +...++|++
T Consensus 323 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~---~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 323 ATSA--PQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIA---DPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp CSSC--CSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEET---TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred cCcc--ccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecC---CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 5421 233466778866677889999996 4599998875 2468999986555544 444455543
No 20
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=1.3e-36 Score=280.44 Aligned_cols=334 Identities=17% Similarity=0.181 Sum_probs=261.0
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCC-----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
..++...++.+.|+.+++++.+.... +++ +.......++++.++++++.++++++++++|+++|+..++.
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~ 103 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVAN 103 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHH
Confidence 46777777778888999998875321 221 12467788999999999998433469999999999999999
Q ss_pred cc----CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++ +.+||+|+++.++|++.. +...++..|.+++.++.+.++.+|+++++++++ +++++|++++++||||.
T Consensus 104 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~ 179 (406)
T 1kmj_A 104 SWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD----EKTRLLAITHVSNVLGT 179 (406)
T ss_dssp HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC----TTEEEEEEESBCTTTCC
T ss_pred HhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhc----cCCeEEEEeCCCccccC
Confidence 98 899999999999998763 556677889999999998788899999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++|++ +|+++|+|++|+.+..+++....+.|++++|+||.+ |+.|+|++++++++++++........+.
T Consensus 180 ~~~l~~i~~l~~~--~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~~~~~~~~~~~~~~~~~ 256 (406)
T 1kmj_A 180 ENPLAEMITLAHQ--HGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMI 256 (406)
T ss_dssp BCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHCCCSSCSTTSE
T ss_pred cCCHHHHHHHHHH--cCCEEEEEchhhcCCCCCcccccCCCEEEEEchhcc-CCCCcEEEEEeHHHHhhcCCcccCCCce
Confidence 9999999999999 999999999999887666655567899999999988 6888999999999998887554322110
Q ss_pred c---------hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 233 D---------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 233 ~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
+ +.....+++ .++++..+++++.++++.+.+.++++++++..++++++.+.|+++ |+++..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-- 329 (406)
T 1kmj_A 257 ATVSLSEGTTWTKAPWRFE-----AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-- 329 (406)
T ss_dssp EEEETTTEEEECCTTGGGC-----CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--
T ss_pred eecccccccccCCCchhcc-----CCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--
Confidence 0 000011122 335788888888888888887788899999999999999999997 88776652
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecCCCCHHHH
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--------~~~~~iRi~~~~~~~~~~~ 359 (367)
. .+.++.+.++ +.+..++.+.|.+ +||.+.+|... ...+++||++....+++|+
T Consensus 330 ~-~~~~~~~~~~-~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i 391 (406)
T 1kmj_A 330 N-RLGVIAFNLG-KHHAYDVGSFLDN-YGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEV 391 (406)
T ss_dssp T-CCSEEEEEET-TCCHHHHHHHHHH-TTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHH
T ss_pred C-cCCEEEEEEC-CCCHHHHHHHHhh-CCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHH
Confidence 1 2345667774 5677889988865 49999987531 1246899998776555443
No 21
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=100.00 E-value=7e-37 Score=278.24 Aligned_cols=330 Identities=18% Similarity=0.217 Sum_probs=248.9
Q ss_pred CCcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWE 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~ 74 (367)
.+.|++.|||.++|+.+++++.+... .++++.+.+..+++++.+++++|++++ +.+++|+|+++++.
T Consensus 3 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 3 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred cceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence 46899999999999999999988652 233444556788999999999999764 43577899999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CC--CCCHHHHHHHHhccCCCCccEEEEEecCCCc
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GE--GAKLDVLASKLAADTAHTIKAICIVHNETAT 150 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~--~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t 150 (367)
.++.+++.+||+|+++++++++..+...++..| +++.++.+. ++ .+|.++++ ++ +++|+|++++++|||
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~----~~t~~v~~~~~~n~t 155 (362)
T 2c0r_A 83 MIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ----DNAAYLHLTSNETIE 155 (362)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC----TTEEEEEEESEETTT
T ss_pred HHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC----CCcCEEEEeCCcCcc
Confidence 999999999999999888888865556677789 999998762 22 34666654 44 578999999999999
Q ss_pred ccc-ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 151 GVT-NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 151 G~~-~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
|.+ .|+++| +|+++++|++|+.+..++++.+ .|++++|+||++ |+.|+|++++++++++++.... .
T Consensus 156 G~~~~~l~~i--------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~-g~~G~G~l~~~~~~~~~l~~~~--~ 222 (362)
T 2c0r_A 156 GAQFKAFPDT--------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNL-GPSGVTVVIVREDLVAESPKHL--P 222 (362)
T ss_dssp TEECSSCCCC--------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTT-CCSSCEEEEEEGGGSSSCCTTS--C
T ss_pred ceeccccccc--------CCCEEEEEChhhccCCccchhH--CcEEEEeccccc-cCcCcEEEEEcHHHHhhccccC--c
Confidence 996 566654 6899999999999887776654 499999999999 5889999999998876664321 1
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccCCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWFSD 306 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~ 306 (367)
.+.++..... .+ ..+++++...+.++.++++.+.+. ++++++++.+++++++.+.|+++| + ++..+ +...+.
T Consensus 223 ~~~~~~~~~~---~~-~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~ 297 (362)
T 2c0r_A 223 TMLRYDTYVK---NN-SLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD-VDSRSD 297 (362)
T ss_dssp GGGCHHHHHH---TT-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-GGGBCS
T ss_pred hHHhHHHHhh---cc-CcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-hHHcCC
Confidence 2233222111 11 125678888889999999998876 689999999999999999999986 6 66442 222355
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
.++++.++++.+..++++.|.++ ||.+.+|... .+.+|||+....+.+ +.+.++|+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~L~~~-gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~ 355 (362)
T 2c0r_A 298 MNITFRLASEELEKEFVKASEQE-GFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFME 355 (362)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT-TEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCcchHHHHHHHHHHC-CCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 57788886445677899998654 9988877544 346999987655544 33344443
No 22
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.1e-36 Score=278.60 Aligned_cols=327 Identities=19% Similarity=0.265 Sum_probs=254.4
Q ss_pred CChHHHHHHHcc----CCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 19 HIPDQVIRAMNR----NNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 19 ~~~~~v~~a~~~----~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
++++++++++.+ ....|+++.+.+..+++++.+++++|.+ +.+++++|||+|++.++.. +.+||+|++..++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~ 84 (379)
T 3ke3_A 8 DIDPNGLLEYSVVYTDRALNHMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGW 84 (379)
T ss_dssp CCSTTSCCCCCSSCCTTSCCTTSHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSH
T ss_pred cCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCc
Confidence 344445555553 3334667777889999999999999987 4689999999999998754 56999999999999
Q ss_pred chHHHHHHHHHhCC--ceEEEeCCCC---------CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHH
Q 017726 95 FSLLWIDQQQRLNF--NVDVVESDWG---------EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVR 160 (367)
Q Consensus 95 ~~~~~~~~~~~~g~--~~~~v~~~~~---------~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~ 160 (367)
++..+...++..|. +++.++.+.. ..+|++++++++++ +++++|++++++|++|.+.| +++|.
T Consensus 85 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~~~G~~~~~~~l~~i~ 161 (379)
T 3ke3_A 85 FSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE---DKSAIVYAPHVETSSGIILSEEYIKALS 161 (379)
T ss_dssp HHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH---HTCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhh---cCCcEEEEEeecCCCceeCCHHHHHHHH
Confidence 98776666776774 6777776431 25799999999964 35799999999999999999 99999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHH---
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY--- 237 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 237 (367)
++|++ +|+++++|++++ +..++++...++|++++|+||+++|++|+|++++++++++++......++++++..+
T Consensus 162 ~~~~~--~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 238 (379)
T 3ke3_A 162 EAVHS--VGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTI 238 (379)
T ss_dssp HHHHH--TTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHH
T ss_pred HHHHH--cCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHH
Confidence 99999 999999999999 888888877789999999999999899999999999999988765555555554433
Q ss_pred HHHhhcCC-ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 238 IKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
..+++.+. .+.+|+++..++++.++++.+.++|++++.++.+++++++++.|+++|+++..+. ..+++.++.+.. ++
T Consensus 239 ~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~-~~~~~~i~~~~~-~~ 316 (379)
T 3ke3_A 239 MRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAE-GFEAPGVVVSYT-ER 316 (379)
T ss_dssp HHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCT-TCBCSSEEEEEC-SC
T ss_pred HHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCc-cccCceEEEEcc-CC
Confidence 23444442 2345899999999999999999989999999999999999999999998887653 234555555554 22
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCC-----CCcEEEEeecCCCCHHH
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKV-----AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~-----~~~~iRi~~~~~~~~~~ 358 (367)
. ...+.+.|. ++||.+.+|..+. .++.+|||++..++++|
T Consensus 317 ~-~~~~~~~L~-~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~d 361 (379)
T 3ke3_A 317 D-DMHKGSAFA-EAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTD 361 (379)
T ss_dssp H-HHHSSHHHH-HTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTC
T ss_pred c-chHHHHHHH-HCCeEEeCCccccccccCcCCEEEEeCCcCCCHHH
Confidence 1 122356665 4599999886532 26789999987665444
No 23
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=9.2e-36 Score=276.13 Aligned_cols=336 Identities=18% Similarity=0.174 Sum_probs=258.0
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CC-C--Cc--HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YR-S--PA--VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~-~--~~--~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
.+++....+.+.|+.+.+++.+.... ++ . +. ......++++.++++++..+++++++++||++|+..++.
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~ 108 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAY 108 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHH
Confidence 35666666667889999998875321 21 1 21 246688999999999998433469999999999999999
Q ss_pred cc----CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++ +.+||+|+++.++|++.. +...++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.
T Consensus 109 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~ 184 (420)
T 1t3i_A 109 SWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS----EKTKLVTVVHISNTLGC 184 (420)
T ss_dssp HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC----TTEEEEEEESBCTTTCB
T ss_pred HhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhC----CCceEEEEeCCcccccC
Confidence 98 899999999999998863 456677889999999998788899999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++|++ +|+++|+|++|+.+..+++....+.|++++|+||.+ |+.|+|++++++++++++..........
T Consensus 185 ~~~l~~i~~l~~~--~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~ 261 (420)
T 1t3i_A 185 VNPAEEIAQLAHQ--AGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPPFFGGGEMI 261 (420)
T ss_dssp BCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCSTTSE
T ss_pred cCCHHHHHHHHHH--cCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhc-CCCceEEEEEchHHHhhcCceecCCCcc
Confidence 9999999999999 999999999999887665665667899999999955 6888999999999988887544321110
Q ss_pred --------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 017726 233 --------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW 303 (367)
Q Consensus 233 --------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 303 (367)
.+.....+++ .++++..+.+++.++++.+.+.+++++.++..++++++.+.|+++ |+++..+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 336 (420)
T 1t3i_A 262 AEVFFDHFTTGELPHKFE-----AGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH 336 (420)
T ss_dssp EEECSSCEEECCTTGGGC-----CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG
T ss_pred ccccccccCCCCchhhcc-----CCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccc
Confidence 0000011111 335778787888888888887788999999999999999999998 88877653110
Q ss_pred -CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-------CC-CcEEEEeecCCCCHHH
Q 017726 304 -FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-------VA-GKVFRIGHLGHLNEVM 358 (367)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~-------~~-~~~iRi~~~~~~~~~~ 358 (367)
..+.++++.++ +.+..++.+.|.+ +||.+.+|..+ .. ++++||++....+.++
T Consensus 337 ~~~~~~~~~~~~-~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~ 398 (420)
T 1t3i_A 337 GDRAALASFNVA-GLHASDVATMVDQ-DGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEE 398 (420)
T ss_dssp SCBCSEEEEEET-TBCHHHHHHHHHT-TTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHH
T ss_pred cccCCEEEEEEC-CCCHHHHHHHHHH-CCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHH
Confidence 01346677774 4577889988864 59999988432 12 5679999876555543
No 24
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=6.2e-36 Score=273.58 Aligned_cols=323 Identities=14% Similarity=0.107 Sum_probs=250.3
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-----CCCC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++..++.++++.+++++.+.... +..+ ...+..+++++++++++|.++ +++++++|+++++..++.++
T Consensus 2 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-GTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTT-EEEEEESSHHHHHHHHHHHH
T ss_pred EeecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCc-CeEEEECCchHHHHHHHHHh
Confidence 5677788888899999988875322 1112 235667899999999999975 45999999999999999887
Q ss_pred C----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
. .+||.|+++.++|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.+.|
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~ 156 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR----DDTILVSVQHANNEIGTIQP 156 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhc----cCceEEEEECCCCCceeeCC
Confidence 6 89999999999988875 234455679999999999888899999999997 46799999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+++|.++|++ +|+ +++|++|+.+..+.+....++|++++|+||++ |+.|+|+++++++. .+.+........
T Consensus 157 ~~~i~~l~~~--~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~--~~~~~~~~~~~~--- 227 (382)
T 4hvk_A 157 VEEISEVLAG--KAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGGGQE--- 227 (382)
T ss_dssp HHHHHHHHSS--SSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGT-SCTTCEEEEEETTC--CCCCSSCSSCTG---
T ss_pred HHHHHHHHHH--cCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhc-CCCceEEEEEcCcc--CcCcccccCCCc---
Confidence 9999999999 999 99999999888777776667899999999975 68889999998775 232221111000
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
. .+..++++...+.++.++++...+ ++++++++.+++++++.+.|+++ |+.+..+.. .....++.+.+
T Consensus 228 ---~-----~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~- 296 (382)
T 4hvk_A 228 ---N-----GLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPE-KRLPNNVNVRF- 296 (382)
T ss_dssp ---G-----GTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS-SBCTTEEEEEE-
T ss_pred ---C-----ccccCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcc-ccCCCEEEEEE-
Confidence 1 112456788888888888886654 58889999999999999999987 887766532 23344677887
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecCCCCHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNEVM 358 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~ 358 (367)
.+.+..++.+.|.++ ||.+.+|..+.. .+++|+++....+.+|
T Consensus 297 ~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~ 358 (382)
T 4hvk_A 297 SYIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358 (382)
T ss_dssp TTCCHHHHHHHHHHT-TCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHH
T ss_pred CCCCHHHHHHHHHHC-CEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHH
Confidence 466788999999655 999998753221 4679999876665543
No 25
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=100.00 E-value=5e-36 Score=281.52 Aligned_cols=337 Identities=12% Similarity=0.039 Sum_probs=255.8
Q ss_pred CCcccccCCCCCChHHHHHHHccCC--------CCCC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNN--------EDYR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~--------~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
..+|++..+..+.|+.+.+++.+.. ..+. .+.+....+++++++++++|++++ +|++++|+++++.+++
T Consensus 67 ~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t~g~t~al~~~~ 145 (465)
T 3e9k_A 67 NAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK-EIALMNALTVNLHLLM 145 (465)
T ss_dssp BCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG-GEEECSCHHHHHHHHH
T ss_pred CeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC-CEEEECCHHHHHHHHH
Confidence 4457766665555666655444421 1111 123445667899999999999854 5999999999999999
Q ss_pred HccCCCCCe---EEEEeCCcchHH--HHHHHHHhCCce-----EEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 78 TNTLSPGDR---IISFLIGQFSLL--WIDQQQRLNFNV-----DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 78 ~~~~~~gd~---vl~~~~~~~~~~--~~~~~~~~g~~~-----~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
.+++.+++. |++..+.|++.. +...++..|+++ ..++.+.++.+|++++++++++++ +++++|++++++
T Consensus 146 ~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~-~~~~lv~~~~~~ 224 (465)
T 3e9k_A 146 LSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEG-DSIAVILFSGVH 224 (465)
T ss_dssp HHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHG-GGEEEEEEESBC
T ss_pred HHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcC-CCeEEEEEeCcc
Confidence 998776655 999999998864 555678889875 344666677889999999998543 478999999999
Q ss_pred CCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCC
Q 017726 148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAK 226 (367)
Q Consensus 148 n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~ 226 (367)
||||.+.|+++|.++|++ +|++|++|++|+.+..++++..+++|++++|+||+++ ||.|+|++++++++++.+.+..
T Consensus 225 n~tG~~~~l~~i~~la~~--~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~ 302 (465)
T 3e9k_A 225 FYTGQHFNIPAITKAGQA--KGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPAL 302 (465)
T ss_dssp TTTCBBCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSS
T ss_pred cCcceeecHHHHHHHHHH--cCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcc
Confidence 999999999999999999 9999999999999998888888889999999999995 6777899999999887766543
Q ss_pred CCceeec------------hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---
Q 017726 227 SVRVFFD------------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA--- 291 (367)
Q Consensus 227 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~--- 291 (367)
.+....+ +.....+++ .++++...++++.++++.+.+.|+++++++..++++++.+.|++
T Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 377 (465)
T 3e9k_A 303 VGWFGHELSTRFKMDNKLQLIPGVCGFR-----ISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYG 377 (465)
T ss_dssp CCGGGBCHHHHTTCCSCCCBCSSGGGGC-----CSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCccCCCCCcccccCCCcCcCCChHHhc-----cCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3211110 011112233 33699999999999999999999999999999999999999998
Q ss_pred --------cCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cCCCCHHHHH
Q 017726 292 --------WGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNEVMFN 360 (367)
Q Consensus 292 --------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~-~~~~~~~~~~ 360 (367)
.|+++..+.+....+.+++|.++ .+..++.+.|.++ ||.+.. ..++++|+++ ..+++.+|+.
T Consensus 378 ~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~--~~~~~l~~~L~~~-Gi~v~~----~~~~~iRis~~~~~~t~edi~ 448 (465)
T 3e9k_A 378 KDKAATKKPVVNIITPSHVEERGCQLTITFS--VPNKDVFQELEKR-GVVCDK----RNPNGIRVAPVPLYNSFHDVY 448 (465)
T ss_dssp ---------CEEECSCSSGGGBCSCEEEEEC--CTTCCHHHHHHTT-TEECEE----ETTTEEEEBCCTTTCCHHHHH
T ss_pred ccccccCCCCeEEeCCCCHhhcccEEEEEec--CCHHHHHHHHHHC-CEEEec----CCCCEEEEeCcccCCCHHHHH
Confidence 57888776433234557888885 4567899999765 998862 2347899997 4566655443
No 26
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=100.00 E-value=5.8e-35 Score=268.92 Aligned_cols=331 Identities=16% Similarity=0.183 Sum_probs=244.7
Q ss_pred CcccccCCCCCChHHHHHHHccC---CCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHHHccCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRN---NED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLS 82 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~---~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~al~~~~~~~~~ 82 (367)
..+++.|||.++|+.+++++.+. ... ++++.+.+..+++++.+++++|+++++++++ |+||++++..++.++++
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~ 119 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID 119 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS
T ss_pred CCccccCCCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC
Confidence 35789999999999999999983 222 3444555678899999999999985456888 99999999999999888
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHh--CCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRL--NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
+| +++.....++..+...+... |.+++.++.+.+...+. + ++ +++++|++++++||||.+.|+++|.
T Consensus 120 ~g--v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-~----i~----~~~~~v~~~~~~nptG~~~~~~~i~ 188 (398)
T 2fyf_A 120 KR--SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-Q----TD----PSVDVIAWAHNETSTGVAVAVRRPE 188 (398)
T ss_dssp SC--EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-C----CC----TTCSEEEEESEETTTTEECCCCCCT
T ss_pred CC--eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-c----cc----CCCCEEEEeCcCCCcceecchHHhh
Confidence 86 22224555654433445555 88999998873332332 1 33 5789999999999999999988877
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC----CCceeechHH
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK----SVRVFFDWKD 236 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~----~~~~~~~~~~ 236 (367)
++ +|+++++|++|+.+..+++.. ++|++++|+||+++++.|+|++++++++++++.... ....+.++..
T Consensus 189 ~~-----~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 261 (398)
T 2fyf_A 189 GS-----DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI 261 (398)
T ss_dssp TC-----C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH
T ss_pred hh-----cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH
Confidence 65 799999999999888776654 489999999999976557899999999988774311 0011222222
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
....+..+ +..++++...++++.++++.+.+.| +++++++..++++++.+.|+++ |+++..+.+..+++.+++++++
T Consensus 262 ~~~~~~~~-~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 340 (398)
T 2fyf_A 262 AVENSLKN-QTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFV 340 (398)
T ss_dssp HHHHHTTT-CCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEEC
T ss_pred HhhhcccC-CCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECC
Confidence 11211112 2356788888889999999888877 9999999999999999999998 8877642221245557889887
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++.+..++.+.|.++ ||.+++|+....++++||++....+.+|+
T Consensus 341 ~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~iRis~~~~~t~e~i 384 (398)
T 2fyf_A 341 DDVDAGTVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAVEPDDV 384 (398)
T ss_dssp TTSCHHHHHHHHHHT-TCBCCSCCTTTCSSEEEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHHHC-CcEEecCcccCCCCEEEEEecCCCCHHHH
Confidence 677889999999866 99999875544457899998765555443
No 27
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=6.9e-36 Score=273.52 Aligned_cols=323 Identities=14% Similarity=0.113 Sum_probs=247.6
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-----CCCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++..++.++++.+++++.+.... +..+. ..+...++++++++++|.++ +++++|+||++|+..++.++
T Consensus 2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~v~~~~g~t~a~~~~~~~l 80 (382)
T 4eb5_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-GTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT-EEEEEESSHHHHHHHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC-CeEEEcCchHHHHHHHHHHH
Confidence 5777788888999999998875432 11122 34678899999999999875 46999999999999999887
Q ss_pred C----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
. .+||+|+++.++|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.+.|
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~ 156 (382)
T 4eb5_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR----DDTILVSVQHANNEIGTIQP 156 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC
T ss_pred HhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc----CCCeEEEEeccCCCccccCC
Confidence 6 89999999999888764 223334579999999998888899999999997 46799999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+++|.++|++ +|++ |+|++|+++..++++...++|++++|+||++ |+.|+|+++++++. .+....... ..
T Consensus 157 l~~i~~l~~~--~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~--~l~~~~~~~-~~--- 226 (382)
T 4eb5_A 157 VEEISEVLAG--KAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGG-GQ--- 226 (382)
T ss_dssp HHHHHHHHTT--SSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGT-CCSSCEEEEEETTC--CCCCSSCSS-CT---
T ss_pred HHHHHHHHHH--CCCE-EEEcchhcCCcccCccccCCCEEEeehHHhc-CCCceEEEEEcccc--ccCceecCC-Cc---
Confidence 9999999999 9999 9999999877666655557899999999985 68889999998763 222211100 00
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
.. .+..++++...+.++.++++.+.+ ++++++++..++++++.+.|+++ |+++..+... ..+.++++.++
T Consensus 227 --~~-----~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~ 297 (382)
T 4eb5_A 227 --EN-----GLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK-RLPNNVNVRFS 297 (382)
T ss_dssp --GG-----GTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS-BCTTEEEEEET
T ss_pred --cc-----cccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCccc-CCCCEEEEEeC
Confidence 00 112446777777888888887765 58889999999999999999987 7777654321 23456778885
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~ 358 (367)
+.+..++.+.|.+ +||.+.+|..+. ..+++||++....+.++
T Consensus 298 -~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (382)
T 4eb5_A 298 -YIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358 (382)
T ss_dssp -TSCHHHHHHHHHH-HTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHH
T ss_pred -CcCHHHHHHHHHH-CCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHH
Confidence 5678899999975 499999875311 14689999765555443
No 28
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=2.3e-35 Score=273.75 Aligned_cols=328 Identities=14% Similarity=0.129 Sum_probs=257.9
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCC--CCC------CC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNE--DYR------SP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW 73 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~--~~~------~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al 73 (367)
.+..+|++.+++.++++.+++++.+... ... .+ ...+...++++.++++++.+++ ++++++||++|+
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggt~a~ 98 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTSGATESD 98 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESSHHHHH
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEeCChHHHH
Confidence 4567899999999999999999998765 211 11 2346678999999999999754 499999999999
Q ss_pred HHHHHccC----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCC
Q 017726 74 ESALTNTL----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNET 148 (367)
Q Consensus 74 ~~~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n 148 (367)
..++.++. .+||.|+++.+.|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++|
T Consensus 99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~n 174 (423)
T 3lvm_A 99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR----DDTILVSIMHVNN 174 (423)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC----TTEEEEECCSBCT
T ss_pred HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcC----CCcEEEEEeCCCC
Confidence 99998766 37999999999888864 223346679999999999888899999999998 4679999999999
Q ss_pred CccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC
Q 017726 149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 149 ~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
|||.+.|+++|.++|++ +|+++|+|++++.+..+.+....++|++++|+||.+ |+.|+|+++++++..+.+......
T Consensus 175 ptG~~~~l~~i~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~~~~~~~~~~~ 251 (423)
T 3lvm_A 175 EIGVVQDIAAIGEMCRA--RGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVRIEAQMHG 251 (423)
T ss_dssp TTCBBCCHHHHHHHHHH--HTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTBCCCCCSSCS
T ss_pred CCccccCHHHHHHHHHH--cCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhc-CCCCeEEEEEeccccCCCCccccC
Confidence 99999999999999999 999999999999888777777778999999999965 688899999998876555443221
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCc
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDT 307 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 307 (367)
... ...+..++++...+.++.++++.+.+. +++++++..++++++.+.|+++ |+.+..+... ....
T Consensus 252 ~~~-----------~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~ 318 (423)
T 3lvm_A 252 GGH-----------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH-GAPN 318 (423)
T ss_dssp SCT-----------TTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT-BCTT
T ss_pred Ccc-----------cccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc-cCCC
Confidence 100 011224567888888888888887766 7889999999999999999888 8887765322 3345
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecCCCCHHH
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNEVM 358 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~ 358 (367)
++.|.+ .+.+..++.+.|.+ |.+.+|..... ++++||++....+++|
T Consensus 319 ~~~~~~-~~~~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~ 384 (423)
T 3lvm_A 319 ILNVSF-NYVEGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384 (423)
T ss_dssp EEEEEE-TTSCHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHH
T ss_pred eEEEEe-CCCCHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHH
Confidence 677777 56788899998854 88887754222 3679999876665543
No 29
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.2e-35 Score=268.63 Aligned_cols=337 Identities=14% Similarity=0.111 Sum_probs=259.2
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC----C-CCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED----Y-RSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~----~-~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
...|++.+++.++++.+++++.+.... . ..+. ......++++.+++++|.++. ++++++|+++++..++.
T Consensus 26 ~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~al~~~~~ 104 (406)
T 3cai_A 26 GWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG-GVVLGADRAVLLSLLAE 104 (406)
T ss_dssp SCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESCHHHHHHHHHH
T ss_pred CeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCChHHHHHHHHH
Confidence 368888888889999999999875321 1 1222 356788999999999998643 59999999999999888
Q ss_pred cc---CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NT---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++ +.+||+|+++.++|++.. +...++..|++++.++.+ .++.+|+++++++++ +++++|++++++||||.
T Consensus 105 ~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~ 180 (406)
T 3cai_A 105 ASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLIS----KSTRLVAVNSASGTLGG 180 (406)
T ss_dssp HTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCC----TTEEEEEEESBCTTTCB
T ss_pred HHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhC----CCceEEEEeCCcCCccc
Confidence 76 789999999999888753 434455579999999987 677889999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcce-eeeeCHHHHHHhccCCCCcee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMG-IVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g-~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+.|+++|.++|++ +|+++|+|++|+.+..++++...++|++++|+||++ |+. +| ++++++++++++....... .
T Consensus 181 ~~~l~~i~~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~-g~~-~G~~~~~~~~~~~~l~~~~~~~-~ 255 (406)
T 3cai_A 181 VTDLRAMTKLVHD--VGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWG-GPP-IGAMVFRDPSVMNSFGSVSTNP-Y 255 (406)
T ss_dssp BCCCHHHHHHHHH--TTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGT-SCS-CEEEEESCHHHHHTSCCCCSCT-T
T ss_pred cCCHHHHHHHHHH--cCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhc-CCC-cCeEEEEehHHHhhcCCcccCC-C
Confidence 9999999999999 999999999999877766665567999999999987 555 78 9999999888776542100 0
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC--------------hHHHHHHHHHHHHHHHHHHHHc-CCcc
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG--------------LENVIERHRRLGKATRLAVEAW-GLKN 296 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g--------------~~~~~~~~~~~~~~l~~~L~~~-g~~~ 296 (367)
.+ ...++ ..++++...++++.++++.+.+.| +++++++..++++++.+.|+++ |+++
T Consensus 256 ~~---~~~~~-----~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 327 (406)
T 3cai_A 256 AT---GPARL-----EIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVML 327 (406)
T ss_dssp CC---GGGGG-----CCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CC---ccccc-----cCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 00 00112 244688888888888998887654 6788899999999999999997 7777
Q ss_pred ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC-------C--CCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN-------K--VAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~-------~--~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
..+.. ...+ ++++.++ +.+..++.+.|.+ +||.+.+|.. . ....++||++....+.+ +...++|+
T Consensus 328 ~~~~~-~~~~-~~~~~~~-~~~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~ 403 (406)
T 3cai_A 328 IGRPE-AQIP-VVSFAVH-KVPADRVVQRLAD-NGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALA 403 (406)
T ss_dssp CCCCS-SBCS-EEEEEET-TBCHHHHHHHHHH-TTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcc-ccCC-EEEEEEC-CcCHHHHHHHHHH-CCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHH
Confidence 66432 2344 6778874 5678899999965 5999998751 1 12467999987766544 44445554
Q ss_pred c
Q 017726 366 Q 366 (367)
Q Consensus 366 ~ 366 (367)
+
T Consensus 404 ~ 404 (406)
T 3cai_A 404 S 404 (406)
T ss_dssp T
T ss_pred H
Confidence 3
No 30
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=2.6e-35 Score=269.78 Aligned_cols=324 Identities=16% Similarity=0.151 Sum_probs=246.5
Q ss_pred cccccCCCCCChHHHHHHHccCCCCC-----C----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDY-----R----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~-----~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++..+..++++.+++++.+..... . ++.......++++.+++++|.+++ ++++++||++|+..++.++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~~~ 81 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFTSCATESINWILKTV 81 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEESCHHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEECCHHHHHHHHHHhh
Confidence 67777777789999999988754321 1 123456788999999999998754 5999999999999999887
Q ss_pred C----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
. .+||+|+++.+.|++.. ....++..|.+++.++.+.++.+|+++++++++ +++++|++++++||||.++|
T Consensus 82 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~ 157 (384)
T 1eg5_A 82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD----EDTFLVSIMAANNEVGTIQP 157 (384)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC----TTEEEEEEESBCTTTCBBCC
T ss_pred hhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC----CCCeEEEEECCCCCcccccC
Confidence 6 79999999999888764 333446789999999998888899999999997 46799999999999999999
Q ss_pred HHHHHHHHHhcCCC--cEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 156 LSKVRKLLDEYRHP--ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 156 ~~~i~~~~~~~~~~--~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+++|.++|++ +| +++|+|++|+++..++++...+.|++++|+||++ |++|+|++++++++ ++....... .
T Consensus 158 ~~~i~~l~~~--~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~--~~~~~~~~~-~-- 229 (384)
T 1eg5_A 158 VEDVTRIVKK--KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGV--PIRPLIHGG-G-- 229 (384)
T ss_dssp HHHHHHHHHH--HCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTS--CCCCSBCSS-C--
T ss_pred HHHHHHHHHh--cCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhc-CCCceEEEEEcCCC--ccccccccC-c--
Confidence 9999999999 88 9999999999876666665567899999999986 68789999999875 122111000 0
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
....+..++++...+.++.++++.+.+ +++++++++.++++++.+.|++.|+++..+... .....++|.+
T Consensus 230 --------~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~ 299 (384)
T 1eg5_A 230 --------QERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI-SLPNTLSVSF 299 (384)
T ss_dssp --------TTTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS-BCTTEEEEEC
T ss_pred --------ccccccCCCCChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCCCeEEeCCccc-CCCCEEEEEe
Confidence 000112456788777888888887644 478899999999999999999888877654221 2334677777
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHH
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~ 358 (367)
+ +.+..++.+.|. ++||.+.+|.... ..+++||++....+.+|
T Consensus 300 ~-~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 361 (384)
T 1eg5_A 300 P-NIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEE 361 (384)
T ss_dssp T-TCCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHH
T ss_pred C-CCCHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHH
Confidence 5 567889999996 5699999874321 13679999775455443
No 31
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=100.00 E-value=2.3e-35 Score=271.79 Aligned_cols=333 Identities=12% Similarity=0.122 Sum_probs=246.6
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC-----CC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
..+|++.+++.++++.+.+++.+.... .. ++...+..+++++++++++|.+++ ++++++|+++|+..++.
T Consensus 20 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~g~t~al~~~~~ 98 (400)
T 3vax_A 20 HMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD-ELIFTSGATESNNIALL 98 (400)
T ss_dssp --CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEESCHHHHHHHHHH
T ss_pred CcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEeCCHHHHHHHHHH
Confidence 367888999999999999999885421 11 112345678999999999999754 59999999999999999
Q ss_pred ccC----CCCC-eEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NTL----SPGD-RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~~----~~gd-~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+++ .+|| .|+++.++|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.
T Consensus 99 ~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~ 174 (400)
T 3vax_A 99 GLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR----PDTLLVSLMHVNNETGV 174 (400)
T ss_dssp TTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC----TTEEEEECCSBCTTTCB
T ss_pred HHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC----CCceEEEEECCCCCcee
Confidence 887 8999 9999999888864 223345579999999998888899999999987 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeee-eCHHHHH----HhccCCC
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVC-ASPKALE----ASKTAKS 227 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~-~~~~~~~----~~~~~~~ 227 (367)
+.|+++|.++|++ +|+++|+|++|+.+..+.+.... +|++++|+||. .|+.|+|+++ ++++.+. .+.+...
T Consensus 175 ~~~l~~i~~la~~--~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 250 (400)
T 3vax_A 175 IQPVAELAQQLRA--TPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKI-GAPKGVGALVTRRREEMDDERVPLEPIMF 250 (400)
T ss_dssp BCCHHHHHHHHTT--SSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSSTTCBCCCCCSSC
T ss_pred eCcHHHHHHHHHh--cCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHh-CCCCceEEEEEecchhccccccccCceec
Confidence 9999999999999 99999999999988877777666 89999999995 5688899999 8873211 1221111
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
.... . ..+..++++...+.++.++++.+.+ ++++++++..++++++.+.|+..|+.+..+... ....
T Consensus 251 ~~~~----------~-~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~ 317 (400)
T 3vax_A 251 GGGQ----------E-RKLRPGTLPVPLIMGLAEAAKIFEA-EHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDH-VVPH 317 (400)
T ss_dssp SSCT----------G-GGTSCSCCCHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTS-BCTT
T ss_pred CCCc----------e-eeeecCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhCCCCEEEeCCccc-CCCC
Confidence 0000 0 0122456888888888888887765 588999999999999999999338887765322 3345
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEee-cCCC--CHHHHHHhhhh
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGH-LGHL--NEVMFNFQLLF 365 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~-------------------~~~iRi~~-~~~~--~~~~~~~~~l~ 365 (367)
++.+.++ +.+.+++.+.|. + ||.+.+|..+.. .+++||++ .... ++.+...+.|+
T Consensus 318 ~~~~~~~-~~~~~~l~~~L~-~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~ 394 (400)
T 3vax_A 318 ILNLSFE-DVDAEAFLVTLK-D-LVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVA 394 (400)
T ss_dssp EEEEECT-TCCHHHHHHHHH-H-HHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---------------
T ss_pred EEEEEeC-CCCHHHHHHHHh-c-CcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHH
Confidence 7778874 568889999997 4 999988742211 37899998 5443 34444444444
No 32
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=4.5e-33 Score=253.20 Aligned_cols=311 Identities=9% Similarity=0.009 Sum_probs=239.9
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++++.+.+++.+.......+ ......++|+.++++++.+++ ++++++|+++++..++.+++.+||+|+++.+.|+
T Consensus 42 ~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~ 119 (363)
T 3ffh_A 42 NPLGTSKKVAAIQANSSVETEIY-PDGWASSLRKEVADFYQLEEE-ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFV 119 (363)
T ss_dssp CTTCCCHHHHHHHHTCBSCCCBC-----CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCH
T ss_pred CCCCCCHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHhCCChh-hEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChH
Confidence 35567899999999866543323 235578999999999998764 5999999999999999999999999999999877
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
+. ...++..|.+++.++.++++.+|+++++++++ +++++|++++|+||||.++|.+++.++++....|+++|+|
T Consensus 120 ~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D 193 (363)
T 3ffh_A 120 QY--RQNALIEGAEVREIPLLQDGEHDLEGMLNAID----EKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLD 193 (363)
T ss_dssp HH--HHHHHHHTCEEEEEECCTTSCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEE
T ss_pred HH--HHHHHHcCCEEEEecCCCCCCcCHHHHHHhcc----cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEe
Confidence 64 35577889999999998888899999999997 4679999999999999999999999999982129999999
Q ss_pred eeeccCce-----eec-cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 176 GVSSICAI-----DFR-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 176 ~~~~~~~~-----~~~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
++|+.+.. ... ....+.++++.|++|+++ ++| +|++++++++++++.....
T Consensus 194 e~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~~-------------------- 252 (363)
T 3ffh_A 194 EAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYG-LASARVGYGIADKEIIRQLNIVRP-------------------- 252 (363)
T ss_dssp CTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTC-CSSCCCEEEEECHHHHHHHHHTCC--------------------
T ss_pred CchHhhcCccccCHHHHhhcCCCEEEEeechhhhc-CchhceeeeecCHHHHHHHHHhCC--------------------
Confidence 99984332 111 112345688999999984 455 4999999999888875321
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-cCCccccCCCccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-WGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
+++++.....++.++++.. ..++++++++.++++++.+.|++ .|+.+..+ .+.+++++++. +..++.+.|
T Consensus 253 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-----~~~~~~~~~~~--~~~~~~~~l 323 (363)
T 3ffh_A 253 PFNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYPA-----NGNFVLIDLGI--EAGTIFSYL 323 (363)
T ss_dssp SCCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC-----CSSEEEEECSS--CHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECCC-----CCeEEEEECCC--CHHHHHHHH
Confidence 3457776666666666532 23778889999999999999999 58887654 23467888853 788999999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.++ ||.+.+|..+..++++||++. ..++.+...++|++
T Consensus 324 ~~~-gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~ 361 (363)
T 3ffh_A 324 EKN-GYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEK 361 (363)
T ss_dssp HHT-TEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred HHC-CeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHH
Confidence 754 999999876555789999965 44455566665543
No 33
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=100.00 E-value=4e-34 Score=259.79 Aligned_cols=323 Identities=15% Similarity=0.171 Sum_probs=238.5
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC------------CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCCh-hHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED------------YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG-TGAWE 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~------------~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~gg-t~al~ 74 (367)
.+.|++.+||.++|+.+++++.+.... ++++...+..+++++.+++++|.++++++++++|+ ++|+.
T Consensus 2 ~~~~~~~~g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~ 81 (360)
T 1w23_A 2 KQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT 81 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred CceEeecCCCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHH
Confidence 367899999999999999999986532 11334556788999999999999755679999998 99999
Q ss_pred HHHHccCCCC---CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHH-HHhccCCCCccEEEEEecCCC
Q 017726 75 SALTNTLSPG---DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLAS-KLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 75 ~~~~~~~~~g---d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~-~i~~~~~~~~~lv~~~~~~n~ 149 (367)
.++.+++.+| |.|+++. +++.....++..| +++.++.++ ++.+|++++++ +++ +++|+|++++++||
T Consensus 82 ~~~~~l~~~~~~g~~vi~~~---~~~~~~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~----~~~k~v~~~~~~np 153 (360)
T 1w23_A 82 MLPMNLLTKGTIGNYVLTGS---WSEKALKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLN----ENDAYLHITSNNTI 153 (360)
T ss_dssp HHHHHHCCTTCEEEEEECSH---HHHHHHHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC----TTEEEEEEESEETT
T ss_pred HHHHHhcCCCCcccEEEecc---hhHHHHHHHHHhC-CeEEeecccccCcCCccchHhhccC----CCCCEEEEeCCCCC
Confidence 9988877664 4444433 3333234467789 999999875 45578999988 775 57899999999999
Q ss_pred ccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 150 tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
||.++| +++++ +|+++|+|++|+.+..+.++.. .|++++|+||+++ +.|+|++++++++++++.... .
T Consensus 154 tG~~~~-----~i~~~--~~~~li~D~a~~~~~~~~~~~~--~di~~~s~sK~~~-~~G~G~~~~~~~~~~~~~~~~--~ 221 (360)
T 1w23_A 154 YGTQYQ-----NFPEI--NHAPLIADMSSDILSRPLKVNQ--FGMIYAGAQKNLG-PSGVTVVIVKKDLLNTKVEQV--P 221 (360)
T ss_dssp TTEECS-----SCCCC--CSSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTS-CTTCEEEEEEHHHHCSCCTTC--C
T ss_pred cceecc-----ccccc--CCceEEEechhhcCCCCcCccc--CCEEEEEcccccC-CCCcEEEEEcHHHHhhcccCC--c
Confidence 999987 34446 9999999999998887666554 3899999999884 778999999999877665432 1
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccCCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWFSD 306 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~ 306 (367)
++.++..... ..+..++++...+.++.++++.+.+. ++++++++++++++++.+.|++++ + ....+ +...++
T Consensus 222 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~ 296 (360)
T 1w23_A 222 TMLQYATHIK----SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE-KGSRSL 296 (360)
T ss_dssp GGGCHHHHHH----TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC-GGGBCS
T ss_pred chhhhhhhhh----ccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCC-chhccC
Confidence 2222211110 11224568888888899999988776 588999999999999999999874 4 33211 112355
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
.++++++++..+..++.+.|.+ +||.+.+|... .+++|+++....+.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~--~~~iRis~~~~~~~~~ 345 (360)
T 1w23_A 297 MNVTFNLRNEELNQQFLAKAKE-QGFVGLNGHRS--VGGCRASIYNAVPIDA 345 (360)
T ss_dssp SEEEEECSSHHHHHHHHHHHHH-TTEESCBCCTT--TCSEEEECCTTSCHHH
T ss_pred cEEEEEcCCCccHHHHHHHHHH-CCeeeecCCCC--CCeEEEEecCCCCHHH
Confidence 5788888543345678888864 59999877542 4679999876555543
No 34
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=4.2e-33 Score=252.48 Aligned_cols=319 Identities=10% Similarity=-0.010 Sum_probs=242.5
Q ss_pred CcccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+.+.+.- .|.++++.+.+++.+.......| ......++|+.++++++++++ ++++++|+++++..++.+++.+||+
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~l~~~la~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~ 94 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARDAVVKANRY-AKNEILMLGNKLAAHHQVEAP-SILLTAGSSEGIRAAIEAYASLEAQ 94 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHHTGGGTTSC-CHHHHHHHHHHHHHHTTSCGG-GEEEESHHHHHHHHHHHHHCCTTCE
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHhhCcCC-CCCchHHHHHHHHHHhCCChH-HEEEeCChHHHHHHHHHHHhCCCCe
Confidence 4444443 44567899999999876543333 245678999999999998654 5999999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|++..+.|++.. ..++..|.+++.++.+.++.+|+++++++++++ +++++|++++|+||||.++|.+++.++++..
T Consensus 95 vl~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 170 (354)
T 3ly1_A 95 LVIPELTYGDGE--HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAY--SGPSIVYLVNPNNPTGTITPADVIEPWIASK 170 (354)
T ss_dssp EEEESSSCTHHH--HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTC--SSCEEEEEESSCTTTCCCCCHHHHHHHHHTC
T ss_pred EEECCCCchHHH--HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccC--CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence 999999887753 557788999999999888899999999999842 2679999999999999999988888877765
Q ss_pred CCCcEEEEeeeeccCceee---c----cccc-cceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 167 RHPALFLVDGVSSICAIDF---R----MDEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~---~----~~~~-~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
++|+++|+|++|+.+...- . .... +.++++.|+||+++ ++.++|++++++++++++.....
T Consensus 171 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------- 240 (354)
T 3ly1_A 171 PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVA---------- 240 (354)
T ss_dssp CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTT----------
T ss_pred CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcC----------
Confidence 5899999999987544321 1 1122 56799999999994 23447999999999888875321
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
.++++.....++.++++.. ..++++++++.++++++.+.|+++|+.+..+ .+.++++.++.
T Consensus 241 ----------~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~~-- 301 (354)
T 3ly1_A 241 ----------GEKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLPS-----EGNFVFHQLVV-- 301 (354)
T ss_dssp ----------CSCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----CSSEEEEECSS--
T ss_pred ----------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECCC-----CceEEEEECCC--
Confidence 2356766666666666533 2377888999999999999999988877654 33467888853
Q ss_pred CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+..++.+.|.+ +||.+. |..+..++++||++. ..++.+...++|+
T Consensus 302 ~~~~~~~~l~~-~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~ 346 (354)
T 3ly1_A 302 PLKDYQTHMAD-AGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMR 346 (354)
T ss_dssp CHHHHHHHHHH-TTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-CCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHH
Confidence 77899999975 599998 654445678999964 4444555555444
No 35
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.4e-33 Score=254.91 Aligned_cols=319 Identities=13% Similarity=0.054 Sum_probs=240.2
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCC----C-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC--
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYR----S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP-- 83 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~----~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~-- 83 (367)
.++..++.++++.+.+++.+...... . +...+...++++++++++|.++. ++++++||++|+..++.++..+
T Consensus 33 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~i~~~~ggt~a~~~~~~~~~~~~~ 111 (397)
T 3f9t_A 33 NIFGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDA-YGHIVSGGTEANLMALRCIKNIWR 111 (397)
T ss_dssp CBCSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTC-EEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC-CEEEecCcHHHHHHHHHHHHHHHH
Confidence 34555566677788888877544321 1 23456778899999999999765 4899999999999999887655
Q ss_pred -----------CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 84 -----------GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 84 -----------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
||+|++..+.|++.. ..++..|++++.++.++++.+|++++++++++ .++++|++++|+||||.
T Consensus 112 ~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~ 186 (397)
T 3f9t_A 112 EKRRKGLSKNEHPKIIVPITAHFSFE--KGREMMDLEYIYAPIKEDYTIDEKFVKDAVED---YDVDGIIGIAGTTELGT 186 (397)
T ss_dssp HHHHTTCCCCSSCEEEEETTCCTHHH--HHHHHHTCEEEEECBCTTSSBCHHHHHHHHHH---SCCCEEEEEBSCTTTCC
T ss_pred hhhhhcccCCCCeEEEECCcchhHHH--HHHHHcCceeEEEeeCCCCcCCHHHHHHHHhh---cCCeEEEEECCCCCCCC
Confidence 999999999888753 55677899999999998888999999999985 15699999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCce--------------eeccccccceEEEecCCCcccCCCcceeeeeCHHH
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAI--------------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA 218 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~--------------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~ 218 (367)
+.|+++|.++|++ +|+++|+|++|+.+.. +++... ++|+++.|+||++.++.++|+++++++.
T Consensus 187 ~~~l~~i~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~ 263 (397)
T 3f9t_A 187 IDNIEELSKIAKE--NNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIG 263 (397)
T ss_dssp BCCHHHHHHHHHH--HTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGG
T ss_pred CCCHHHHHHHHHH--hCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHH
Confidence 9999999999999 9999999999986543 334444 7899999999999777788988886654
Q ss_pred -HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccc
Q 017726 219 -LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC 297 (367)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~ 297 (367)
.+.+.... . +... .. .....++.+.....++.+++..+...++++..++..++++++.+.|+++|+++.
T Consensus 264 ~~~~~~~~~-~-~~~~-------~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 333 (397)
T 3f9t_A 264 YKRYLDVDA-P-YLTE-------TR-QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPV 333 (397)
T ss_dssp GGGGTCEEC-T-TSSS-------SE-ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred HHHhhccCC-c-cccC-------CC-ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 33332110 0 0000 00 000112333345577788888887777888999999999999999999988765
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+ ....++++..+ +..++.+.|.++ ||.+.++.. ++++||++....+.+++
T Consensus 334 ~~----~~~~~~~~~~~---~~~~~~~~l~~~-gi~v~~~~~---~~~~Ri~~~~~~~~e~i 384 (397)
T 3f9t_A 334 IE----PILNIVAIEDE---DYKEVCKKLRDR-GIYVSVCNC---VKALRIVVMPHIKREHI 384 (397)
T ss_dssp SC----CSSSEEEEECT---THHHHHHHHHHT-TCBCEECSS---SSEEEEECCTTCCHHHH
T ss_pred cC----CCccEEEEEeC---CHHHHHHHHHhC-CeEEeccCC---CCEEEEEEcCCCCHHHH
Confidence 54 23456777774 367899999766 999988654 47899998765555443
No 36
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=7.3e-35 Score=265.69 Aligned_cols=323 Identities=12% Similarity=0.078 Sum_probs=242.5
Q ss_pred CCCccccc-CCCCCChHHHHHHHccCCCCC----------CCCcHHHHHHHHHHH-HHHHhcCCCCceEEecCChhHHHH
Q 017726 7 PGKNHLFV-PGPVHIPDQVIRAMNRNNEDY----------RSPAVPALTKTLLED-IKKIFKTTSGTPFLIPTTGTGAWE 74 (367)
Q Consensus 7 ~~~~~~~~-~~p~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~~-la~~~~~~~~~~v~~~~ggt~al~ 74 (367)
|..++++. .+..++++.+.+++.+..... .++.......++++. +++++|.+ ++++++|+++|+.
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAKF 83 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEeCChHHHHH
Confidence 34455555 556678899999999865432 123345668899999 99999987 5999999999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEe--CCCCCCCCHHHHHHHHhccCC-CCccEEEEEecCCCcc
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE--SDWGEGAKLDVLASKLAADTA-HTIKAICIVHNETATG 151 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~--~~~~~~~d~e~l~~~i~~~~~-~~~~lv~~~~~~n~tG 151 (367)
.++.+++.+||+|+++.++|++.. ..++..|++++.++ .++++.+|++++++++++... +++++|++++++||||
T Consensus 84 ~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG 161 (371)
T 2e7j_A 84 AVMHSLAKKDAWVVMDENCHYSSY--VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYG 161 (371)
T ss_dssp HHHHHHCCTTCEEEEETTCCHHHH--HHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTC
T ss_pred HHHHHHhCCCCEEEEccCcchHHH--HHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCc
Confidence 999998999999999999988865 33678899999999 777788999999999984210 2679999999999999
Q ss_pred ccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHH-hccCCCCce
Q 017726 152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA-SKTAKSVRV 230 (367)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~-~~~~~~~~~ 230 (367)
.++|+++|.++|++ +|+++|+|++|+.+..+.+....+.|++++|+||+++++.++|+++++++++++ +...... .
T Consensus 162 ~~~~~~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~ 238 (371)
T 2e7j_A 162 NLPDVKKIAKVCSE--YDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKY-K 238 (371)
T ss_dssp CCCCHHHHHHHHHT--TTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSC-T
T ss_pred ccCCHHHHHHHHHH--cCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccC-c
Confidence 99999999999999 999999999999887766665567899999999999888889999999988776 6543220 0
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH--RRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~--~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
..+ ..+ ..++++..+++++.++++.+.+ ++.++. .++++++.+.|+++|+++..+... .+.+
T Consensus 239 ~~~-----~~~-----~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~ 302 (371)
T 2e7j_A 239 NKE-----VEL-----LGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPH--NHDL 302 (371)
T ss_dssp TSB-----GGG-----TTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSC--CSSE
T ss_pred ccc-----ccc-----ccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCc--cCce
Confidence 000 001 1345777777777788887655 456677 889999999999888877665321 3457
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEE-EeecCC-CCHHH
Q 017726 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFR-IGHLGH-LNEVM 358 (367)
Q Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~------~~~~~iR-i~~~~~-~~~~~ 358 (367)
++++++ +..++.+.|. ++||.+.+ ..+ ..+.++| +++... .++++
T Consensus 303 ~~~~~~---~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~ 355 (371)
T 2e7j_A 303 MFFHAE---VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEE 355 (371)
T ss_dssp EEEECH---HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHH
T ss_pred EEEECC---CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHH
Confidence 888874 5678999887 55999887 211 1256799 998754 44443
No 37
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=2e-33 Score=257.56 Aligned_cols=300 Identities=18% Similarity=0.160 Sum_probs=219.8
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++|+.+++++ |.+ .+++|++|+|+++++.+++.+++++||+|+++.|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p 123 (385)
T 1b5p_A 44 DTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123 (385)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCC
Confidence 4467777776654211 112222223456777777776 432 3356999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
+|+++. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.+++ +++|.++|++
T Consensus 124 ~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~-- 195 (385)
T 1b5p_A 124 YWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT----PRTKALVVNSPNNPTGAVYPKEVLEALARLAVE-- 195 (385)
T ss_dssp CCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CchhHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcC----CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHH--
Confidence 887643 55778899999999874 45789999999887 46799999999999999987 7888999999
Q ss_pred CCcEEEEeeeeccCcee---eccccc--cceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 168 HPALFLVDGVSSICAID---FRMDEW--GIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~~~~--~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
+|++||+|++|+.+... .++... +.++++.|+||+++ ++| +|++++++++++++....
T Consensus 196 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~~~l~~~~-------------- 260 (385)
T 1b5p_A 196 HDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA-MTGWRIGYACGPKEVIKAMASVS-------------- 260 (385)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHH--------------
T ss_pred cCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcC-CcccceEEEEeCHHHHHHHHHHH--------------
Confidence 99999999998764331 122222 56899999999984 556 799999999887765321
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHH---HHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC-CC
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDL---IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP-SH 316 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 316 (367)
..+ .++++.....++.++++. ..+ .+++.++++.++++++.+.|+++|+.+..+ .+++++++.++ .+
T Consensus 261 -~~~---~~~~~~~~~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~~~ 331 (385)
T 1b5p_A 261 -RQS---TTSPDTIAQWATLEALTNQEASRA-FVEMAREAYRRRRDLLLEGLTALGLKAVRP----SGAFYVLMDTSPIA 331 (385)
T ss_dssp -HTT---TCSCCHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTCCBCCC----SBTTEEEEECTTTC
T ss_pred -hhc---cCCCCHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CeeEEEEEecCCCC
Confidence 001 123455444555555543 222 277888999999999999999888877765 34556777774 24
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
.+..++.+.|. ++||.+.+|..+..++++|||+.
T Consensus 332 ~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~ 365 (385)
T 1b5p_A 332 PDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYA 365 (385)
T ss_dssp SSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECC
T ss_pred CCHHHHHHHHH-HCCeEEecccccCCCCeEEEEec
Confidence 67889999997 66999999865444678999975
No 38
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=8.5e-34 Score=258.14 Aligned_cols=316 Identities=13% Similarity=0.079 Sum_probs=238.6
Q ss_pred ccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 11 HLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 11 ~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
+.+.. .|.++++.+++++.+.......|..... .++|+.+++++|++.+ ++++++|+++++..++.+++.+||+|+
T Consensus 33 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~-~~lr~~la~~~~~~~~-~v~~~~g~~~a~~~~~~~l~~~gd~vl 110 (365)
T 3get_A 33 IKLASNENPFGTPPKAIECLRQNANKAHLYPDDSM-IELKSTLAQKYKVQNE-NIIIGAGSDQVIEFAIHSKLNSKNAFL 110 (365)
T ss_dssp EECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEE
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCh-HHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHHHHhCCCCEEE
Confidence 44443 4456788999999886543222221122 6899999999998654 599999999999999999999999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
+..+.|++.. ..++..|.+++.++. +.++ +|+++++++++ +++++|++++|+||||.++|.+++.++++..+
T Consensus 111 ~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 183 (365)
T 3get_A 111 QAGVTFAMYE--IYAKQCGAKCYKTQSITHNL-DEFKKLYETHK----DEIKLIFLCLPNNPLGECLDASEATEFIKGVN 183 (365)
T ss_dssp ECSSCCTHHH--HHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSC
T ss_pred EeCCChHHHH--HHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC----CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCC
Confidence 9999887643 557788999999998 5677 99999999997 47899999999999999999999999998433
Q ss_pred CCcEEEEeeeeccCc------eeecc----ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICA------IDFRM----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~------~~~~~----~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+. ...+. ...+.++++.|+||+++ .+.++|++++++++++++.....
T Consensus 184 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--------- 254 (365)
T 3get_A 184 EDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRA--------- 254 (365)
T ss_dssp TTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSC---------
T ss_pred CCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcC---------
Confidence 799999999988433 11111 12356799999999984 23347999999999887764311
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
.++++.....++.++++.. ..++++++++.++++++.+.|+++|+.+..+ .+.+++++++..
T Consensus 255 -----------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-----~~~~~~~~~~~~ 316 (365)
T 3get_A 255 -----------PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKHNIKIIDS-----YTNFITYFFDEK 316 (365)
T ss_dssp -----------TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-----SSSEEEEECSSS
T ss_pred -----------CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-----CCeEEEEECCCC
Confidence 2346666666666666632 3378889999999999999999998887654 234578888654
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+..++.+.|.++ ||.+.+|..+. ++++||++. ..++.+.+.++|++
T Consensus 317 -~~~~~~~~l~~~-gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~l~~ 362 (365)
T 3get_A 317 -NSTDLSEKLLKK-GIIIRNLKSYG-LNAIRITIG-TSYENEKFFTEFDK 362 (365)
T ss_dssp -CHHHHHHHHHTT-TEECEECGGGT-CSEEEEECC-CHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHC-CEEEEECccCC-CCEEEEEcC-CHHHHHHHHHHHHH
Confidence 788999999765 99999886554 678999965 44555556655543
No 39
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=100.00 E-value=3.7e-33 Score=258.40 Aligned_cols=331 Identities=16% Similarity=0.118 Sum_probs=239.8
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCC-CC--------cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYR-SP--------AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~-~~--------~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
.++..|++..++.+.|+.+.+++.+...... .+ ++.....++++.+++++|.+++ ++++++|+++++..+
T Consensus 26 ~~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~al~~a 104 (416)
T 1qz9_A 26 PEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-EVVVTDTTSINLFKV 104 (416)
T ss_dssp CTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT-SEEECSCHHHHHHHH
T ss_pred CCCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcc-cEEEeCChhHHHHHH
Confidence 3567788877777778888888877543211 11 1236678999999999999754 589999999999888
Q ss_pred HHccC------CCCCeEEEEeC-CcchHH--HHHHHHHh--CCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 77 LTNTL------SPGDRIISFLI-GQFSLL--WIDQQQRL--NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 77 ~~~~~------~~gd~vl~~~~-~~~~~~--~~~~~~~~--g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
+.+++ .+||++++..+ .|.+.. +...++.. |++++.++. +++++++++ +++++|++++
T Consensus 105 l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~----~~~~~v~~~~ 173 (416)
T 1qz9_A 105 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAID----QDTAVVMLTH 173 (416)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCS----TTEEEEEEES
T ss_pred HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhC----CCceEEEEec
Confidence 87765 88997666555 444433 22334445 899988886 788998887 4679999999
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcc-eeeeeCHHHHHHhcc
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGM-GIVCASPKALEASKT 224 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~-g~~~~~~~~~~~~~~ 224 (367)
++||||.+.|+++|.++|++ +|+++|+|++|+.+..+.+....++|++++|+||++.++.|+ |++++++++++++..
T Consensus 174 ~~nptG~~~~l~~i~~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~ 251 (416)
T 1qz9_A 174 VNYKTGYMHDMQALTALSHE--CGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQ 251 (416)
T ss_dssp BCTTTCBBCCHHHHHHHHHH--HTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCC
T ss_pred cccCcccccCHHHHHHHHHH--cCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCC
Confidence 99999999999999999999 999999999999887766655557899999999998777777 999999998776654
Q ss_pred CCCCceee----chHHHHHHhh--cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CC
Q 017726 225 AKSVRVFF----DWKDYIKFYN--LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GL 294 (367)
Q Consensus 225 ~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~ 294 (367)
........ ++... ..+. ...+..++++...++++.++++.+.+.+++++.+++.++++++.+.|+++ |+
T Consensus 252 ~~~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~ 330 (416)
T 1qz9_A 252 PLSGWFGHSRQFAMEPR-YEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330 (416)
T ss_dssp SCCCGGGBCTTSCCCSS-CCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CccccCccccccCCCCc-cCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCe
Confidence 32210000 00000 0000 00122456888888888889998877788999999999999999999986 78
Q ss_pred ccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHH
Q 017726 295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMF 359 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~ 359 (367)
++..+........+++++++ +..++.+.|.++ ||.+.. ..+.++||++.. ..+.+|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~-gi~~~~----~~~~~lRis~~~~~~t~~~i 388 (416)
T 1qz9_A 331 TLVTPREHAKRGSHVSFEHP---EGYAVIQALIDR-GVIGDY----REPRIMRFGFTPLYTTFTEV 388 (416)
T ss_dssp EECSCSSGGGBCSEEEEECT---THHHHHHHHHTT-TEECEE----ETTTEEEEECCTTTCCHHHH
T ss_pred EEeCCCCHHHcCCEEEEecC---CHHHHHHHHHhC-CcEecc----CCCCeEEEeCcccCCCHHHH
Confidence 87765321122346788875 367899999755 998743 235689999763 4444433
No 40
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=5.1e-33 Score=255.21 Aligned_cols=303 Identities=14% Similarity=0.099 Sum_probs=225.3
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCce-EEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTP-FLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~-v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ ++++ +++++||++++..++.+++.+||+|++..
T Consensus 39 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~ 118 (389)
T 1gd9_A 39 DTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPT 118 (389)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcC
Confidence 3567777777664321 112222223456777777776 753 3356 99999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
+.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 119 ~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~- 191 (389)
T 1gd9_A 119 PAFVSYA--PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT----DKTRALIINSPCNPTGAVLTKKDLEEIADFVVE- 191 (389)
T ss_dssp SCCTTHH--HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH-
T ss_pred CCchhHH--HHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC----cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHH-
Confidence 9988854 45677899999999875 45689999999997 46799999999999999985 8889999999
Q ss_pred CCCcEEEEeeeeccCcee----ecccc----ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 167 RHPALFLVDGVSSICAID----FRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~----~~~~~----~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+... .+... .+.|+++.|+||+++ ++| +|++++++++++++.....
T Consensus 192 -~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~--------- 260 (389)
T 1gd9_A 192 -HDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MTGWRLGFVAAPSWIIERMVKFQM--------- 260 (389)
T ss_dssp -TTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHT---------
T ss_pred -cCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC-CcccceEEEEECHHHHHHHHHHHh---------
Confidence 99999999999876431 12221 357999999999984 555 6999999998887764211
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
+. .++.+.....++.++++....+ .+++++++++++++++.+.|+++|+++..+ .++.++++.++.
T Consensus 261 -------~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~ 327 (389)
T 1gd9_A 261 -------YN--ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP----KGAFYIFPRIRD 327 (389)
T ss_dssp -------TT--TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC----CBTTEECCBCGG
T ss_pred -------hh--ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCC----CeeeEEEEeccC
Confidence 11 2345665556666666643331 477888999999999999999988877665 345566677753
Q ss_pred -CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 316 -HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 316 -~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
+.+..++.+.|.+++||.+.+|..+. .++++||++..
T Consensus 328 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~ 367 (389)
T 1gd9_A 328 TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT 367 (389)
T ss_dssp GTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC
Confidence 56788999999756799999875432 35689999765
No 41
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=5e-33 Score=256.44 Aligned_cols=324 Identities=11% Similarity=0.007 Sum_probs=235.2
Q ss_pred cccccCCC--CCChHHHHHHHccCCCCC--CCCcHHHHHHHHHHHHHHHh----cCC-CC-ceEEecCChhHHHHHHHHc
Q 017726 10 NHLFVPGP--VHIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIF----KTT-SG-TPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 10 ~~~~~~~p--~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~----~~~-~~-~~v~~~~ggt~al~~~~~~ 79 (367)
.+.+..|- .+.++.+.+++.+..... ..|.......++++.+++++ |.+ .+ +++++++|+++++..++.+
T Consensus 49 ~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~ 128 (404)
T 2o1b_A 49 LINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTC 128 (404)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHH
Confidence 34444442 345788888888765321 11221123457777777777 875 22 4699999999999999999
Q ss_pred cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
++.+||+|++..|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++|
T Consensus 129 l~~~gd~Vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~ 202 (404)
T 2o1b_A 129 VINPGDYVLLPDPGYTDYL--AGVLLADGKPVPLNLEPPHYLPDWSKVDSQII----DKTKLIYLTYPNNPTGSTATKEV 202 (404)
T ss_dssp HCCTTCEEEEEESCCSSHH--HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH----HHEEEEEECSSCTTTCCCCCHHH
T ss_pred hcCCCCEEEEcCCCchhHH--HHHHHCCCEEEEeccCcccCcCCHHHHHHhhc----cCceEEEEcCCCCCCCccCCHHH
Confidence 9999999999999888854 45677899999999875 34589999999987 36799999999999999986
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCce---eecccc----ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAK 226 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~~~~~~----~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~ 226 (367)
+++|.++|++ +|+++|+|++|+.+.. +.++.. .+.++++.|+||+++ ++| +|++++++++++++....
T Consensus 203 l~~l~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~ 279 (404)
T 2o1b_A 203 FDEAIAKFKG--TDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYN-MSGFRVGFAVGNKDMIQALKKYQ 279 (404)
T ss_dssp HHHHHHHHTT--SSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhcc-CchhheEeEecCHHHHHHHHHHH
Confidence 6778899998 9999999999986432 122221 256899999999994 344 699999999988775321
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
. . +.++++...+.++.++++.. +..+++++++++++++++.+.|+++|+.+..+ .++
T Consensus 280 -------------~---~--~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g 336 (404)
T 2o1b_A 280 -------------T---H--TNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHA----KGG 336 (404)
T ss_dssp -------------H---H--HCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECC----CBS
T ss_pred -------------h---h--ccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCC----Ccc
Confidence 0 0 12245665555555555543 22377888899999999999999988877665 355
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecCCCCHHHHHHhhhh
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+++++++++.+..++.++|.+++||.+.+|..+. .++++||++....++.+...+.|.
T Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~ 397 (404)
T 2o1b_A 337 IYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLT 397 (404)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHH
Confidence 56888887667788999998766699999875432 356899998775555554444443
No 42
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=3.7e-33 Score=256.12 Aligned_cols=297 Identities=19% Similarity=0.152 Sum_probs=220.4
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++|+.+++++ |.+ +++++++++|+++++..++.+++.+||+|+++.+
T Consensus 54 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~ 133 (389)
T 1o4s_A 54 PTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 133 (389)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 4567788887764432 112222233456777777776 664 3456999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 134 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-- 205 (389)
T 1o4s_A 134 VWVSYI--PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV----GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKK-- 205 (389)
T ss_dssp CCTTHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CchhHH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc----cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHH--
Confidence 888754 45677899999999874 45789999999987 46799999999999999987 8889999999
Q ss_pred CCcEEEEeeeeccCcee---ecc---cc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 168 HPALFLVDGVSSICAID---FRM---DE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~---~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+|+++|+|++|+.+... .+. .. .+.|+++.|+||+++ ++| +|++++++++++++....
T Consensus 206 ~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~l~~~~~~~~~l~~~~------------ 272 (389)
T 1o4s_A 206 RNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS-MTGWRVGYLISSEKVATAVSKIQ------------ 272 (389)
T ss_dssp HTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHH------------
T ss_pred cCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHh------------
Confidence 99999999999865431 111 11 367999999999994 555 799999999887765321
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
..+ .++.+.....+ +...+. .+++++++++.++++++.+.|+++|+++..+ ..+.+++++++ .+
T Consensus 273 ---~~~---~~~~~~~~~~a---~~~~l~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~--~~ 336 (389)
T 1o4s_A 273 ---SHT---TSCINTVAQYA---ALKALE-VDNSYMVQTFKERKNFVVERLKKMGVKFVEP----EGAFYLFFKVR--GD 336 (389)
T ss_dssp ---HHH---TCSCCHHHHHH---HHHHTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC----SBSSEEEEECS--SC
T ss_pred ---hhc---ccCCCHHHHHH---HHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCeeecC----CcceEEEEeCC--CC
Confidence 001 12234433233 333333 2478889999999999999999988877655 34556777875 57
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
..++.++|.+++||.+.+|..+..++++||++..
T Consensus 337 ~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~ 370 (389)
T 1o4s_A 337 DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT 370 (389)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC
Confidence 7899999975569999987544345689999764
No 43
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=4e-33 Score=255.66 Aligned_cols=315 Identities=12% Similarity=0.028 Sum_probs=228.1
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHH----hcCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKI----FKTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~----~~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|.......++++.++++ +|.+ +++ ++++++|+++++..++.+++.+||+|++..
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~ 122 (386)
T 1u08_A 43 DGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFD 122 (386)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeC
Confidence 3567888887764322 11222112234566666666 4754 334 699999999999999999889999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 123 p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~-- 194 (386)
T 1u08_A 123 PSYDSYA--PAIALSGGIVKRMALQPPHFRVDWQEFAALLS----ERTRLVILNTPHNPSATVWQQADFAALWQAIAG-- 194 (386)
T ss_dssp SCCTTHH--HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT--
T ss_pred CCchhHH--HHHHHcCCEEEEeecCcccCcCCHHHHHHhhc----ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHH--
Confidence 9988753 45678899999999875 46789999999996 47799999999999999986 5788999998
Q ss_pred CCcEEEEeeeeccCce------ee-ccc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 168 HPALFLVDGVSSICAI------DF-RMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~------~~-~~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
+|+++|+|++|+.+.. ++ ... ..+.|+++.|+||+++ ++| +|++++++++++++....
T Consensus 195 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~----------- 262 (386)
T 1u08_A 195 HEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH-MTGWKVGYCVAPAPISAEIRKVH----------- 262 (386)
T ss_dssp SCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT-CGGGCCEEEECCHHHHHHHHHHH-----------
T ss_pred cCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC-CcccceEEEEcCHHHHHHHHHHH-----------
Confidence 9999999999976322 11 111 2368999999999985 555 799999999887775321
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH- 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~- 316 (367)
. . ..++.+...+.++.++++.. +..++++++++.++++++.+.|++.|+++..+ .++.++++++++.
T Consensus 263 --~---~--~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~ 330 (386)
T 1u08_A 263 --Q---Y--LTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPC----EGTYFLLVDYSAVS 330 (386)
T ss_dssp --H---H--HTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCC----CBSSEEEEECTTTC
T ss_pred --H---h--hccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CceEEEEEecCCCC
Confidence 0 0 02335554555555566543 23377788899999999999998888887665 3456788888643
Q ss_pred -CCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 317 -INSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 317 -~~~~~l~~~L~~~~gv~v~~g~~~----~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+..++.++|.+++||.+.+|..+ ..++++||++....++.+...+.|.
T Consensus 331 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~ 384 (386)
T 1u08_A 331 TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLR 384 (386)
T ss_dssp CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHh
Confidence 578889998876779999987432 2356899998653333444444444
No 44
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=1.3e-32 Score=250.46 Aligned_cols=316 Identities=13% Similarity=0.133 Sum_probs=236.5
Q ss_pred CcccccCC--CCCChHHHHHHHccCCC--C-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNE--D-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~--~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
+.+.+..+ |.+.++.+.+++.+... . +.++. ....++|+.+++++|.++++++++|+|+++++..++.+++.+
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~ 108 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV--PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARP 108 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC--CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCT
T ss_pred CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC--CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCC
Confidence 44555443 34578889998887543 1 22222 246799999999999854456999999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVR 160 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~ 160 (367)
||+|++..+.|++.. ..++..|.+++.++.+.++.+|++++++++++ .++++|++++|+||||.++| +++|.
T Consensus 109 gd~Vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~i~ 183 (367)
T 3euc_A 109 GAKVMAPVPGFVMYA--MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE---HQPAIVYLAYPNNPTGNLFDAADMEAIV 183 (367)
T ss_dssp TCEEEEEESCSCCSC--HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH---HCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCEEEEcCCCHHHHH--HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc---cCCCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 999999999888753 44678899999999998888999999999985 25799999999999999976 56677
Q ss_pred HHHHhcCC--CcEEEEeeeeccCcee---eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 161 KLLDEYRH--PALFLVDGVSSICAID---FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 161 ~~~~~~~~--~~~vi~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
++|++ + |+++|+|++|+..... ......+.++++.|+||+..++.++|++++++++++++.....
T Consensus 184 ~~~~~--~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~-------- 253 (367)
T 3euc_A 184 RAAQG--SVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKVRP-------- 253 (367)
T ss_dssp HHTBT--TSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGGCC--------
T ss_pred Hhhhh--cCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHHHHHHHhCC--------
Confidence 77887 8 9999999998753211 1223345679999999983223346999999999888764321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
.++++...+.++.++++. ...+++.+++..++++++.+.|+++ |+.+..+ .+.++++.++
T Consensus 254 ------------~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-----~~~~~~~~~~ 314 (367)
T 3euc_A 254 ------------PYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS-----AANFLLARVP 314 (367)
T ss_dssp ------------SSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC-----SSSEEEEECS
T ss_pred ------------CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC-----CCeEEEEECC
Confidence 334666666666666665 2237788899999999999999998 8886543 3446778875
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+..++.+.|. ++||.+.+|.. +..++++||++. ..++.+...++|+
T Consensus 315 ---~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~ 362 (367)
T 3euc_A 315 ---DAAQTFDRLL-ARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFA 362 (367)
T ss_dssp ---CHHHHHHHHH-TTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHH-HCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHH
Confidence 6789999986 45999998754 334578999954 4455555555554
No 45
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=4.9e-33 Score=253.59 Aligned_cols=292 Identities=14% Similarity=0.117 Sum_probs=217.8
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.++.+.+++.+.... ...|.......++++.++++++ .+ .++++++++|+++++..++.+++.+||+|++..|+
T Consensus 43 ~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~ 122 (370)
T 2z61_A 43 TPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPC 122 (370)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSC
T ss_pred CCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 467788887764322 1122222334577777777775 22 33569999999999999999989999999999999
Q ss_pred cchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL 173 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi 173 (367)
|++.. ..++..|.+++.++ +|+++++++++ +++++|++++|+||||.++|.+ |.++|++ +|+++|
T Consensus 123 ~~~~~--~~~~~~g~~~~~v~------~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~-l~~~~~~--~~~~li 187 (370)
T 2z61_A 123 YPCYK--NFIRFLGAKPVFCD------FTVESLEEALS----DKTKAIIINSPSNPLGEVIDRE-IYEFAYE--NIPYII 187 (370)
T ss_dssp CTHHH--HHHHHTTCEEEEEC------SSHHHHHHHCC----SSEEEEEEESSCTTTCCCCCHH-HHHHHHH--HCSEEE
T ss_pred chhHH--HHHHHcCCEEEEeC------CCHHHHHHhcc----cCceEEEEcCCCCCcCcccCHH-HHHHHHH--cCCEEE
Confidence 88754 45677899998887 68999999987 4679999999999999999999 9999999 999999
Q ss_pred EeeeeccCce---eeccc----cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 174 VDGVSSICAI---DFRMD----EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 174 ~D~~~~~~~~---~~~~~----~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
+|++|+.+.. +.+.. ..+.|+++.|+||+++ ++| +|++++++++++++..... .
T Consensus 188 ~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~----------------~ 250 (370)
T 2z61_A 188 SDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA-MTGWRIGYVISNDEIIEAILKLQQ----------------N 250 (370)
T ss_dssp EECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHH----------------H
T ss_pred EEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC-CccceEEEEEECHHHHHHHHHHHh----------------h
Confidence 9999986543 12222 2367999999999994 556 7999999998887753210 0
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
..++++...+.++.++++.+.+..++++++++.++++++.+.|+++|+++..+ .++.++++.+++ +..++.+
T Consensus 251 --~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~--~~~~~~~ 322 (370)
T 2z61_A 251 --LFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNP----IGAYYVFPNIGE--DGREFAY 322 (370)
T ss_dssp --HTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCC----CBTTEECCBCSS--CHHHHHH
T ss_pred --cccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCC----CcceEEEEecCC--CHHHHHH
Confidence 02245665556666666542233477888899999999999999988777655 345566677753 6788999
Q ss_pred HHHhhCCeEEccCCCCC--CCcEEEEeec
Q 017726 325 RAWQRYNLSLGLGLNKV--AGKVFRIGHL 351 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~--~~~~iRi~~~ 351 (367)
+|.+++||.+.+|..+. ..+++||++.
T Consensus 323 ~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~ 351 (370)
T 2z61_A 323 KLLKEKFVALTPGIGFGSKGKNYIRISYA 351 (370)
T ss_dssp HHHHHHCEECEEGGGGCGGGSSBEEEECC
T ss_pred HHHHhCCEEEeCchhhCCCCCCEEEEEEe
Confidence 99755699999875432 2568999977
No 46
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=7.2e-33 Score=253.49 Aligned_cols=309 Identities=18% Similarity=0.177 Sum_probs=228.9
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~ 98 (367)
+.++.+.+++.+.......|.......++++.++++++.++++ +++++||++++..++.+++.+||+|+++.+.|++..
T Consensus 38 ~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~~-v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~ 116 (381)
T 1v2d_A 38 PPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES-VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYL 116 (381)
T ss_dssp CCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG-EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhcCCChhh-EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH
Confidence 3567777777765432112222234678999999999987544 999999999999999998899999999999888754
Q ss_pred HHHHHHHhCCceEEEeCC---CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEE
Q 017726 99 WIDQQQRLNFNVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALF 172 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~---~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~v 172 (367)
..++..|.+++.++.+ .++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++ +|+++
T Consensus 117 --~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~--~~~~l 188 (381)
T 1v2d_A 117 --PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT----PRTRALLLNTPMNPTGLVFGERELEAIARLARA--HDLFL 188 (381)
T ss_dssp --HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--TTCEE
T ss_pred --HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC----cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHH--cCCEE
Confidence 4577889999999986 456789999999886 46799999999999999986 7889999999 99999
Q ss_pred EEeeeeccCce---eeccc--cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCC
Q 017726 173 LVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 173 i~D~~~~~~~~---~~~~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (367)
|+|++|+.+.. ..++. ..+.|+++.|+||+++ ++| +|++++++++++.+.... ..
T Consensus 189 i~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~-------------~~---- 250 (381)
T 1v2d_A 189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLE-ATGYRVGWIVGPKEFMPRLAGMR-------------QW---- 250 (381)
T ss_dssp EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTT-CGGGCCEEEECCTTTHHHHHHHH-------------HH----
T ss_pred EEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHH-------------hh----
Confidence 99999985432 12222 2468999999999984 556 799999998877765320 00
Q ss_pred ccCCCCcHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
..++++...+.++.++++... +.++++++++++++++++.+.|++.|+++..+ ..+.++++++++. + +.+
T Consensus 251 -~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~~-~---~~~ 321 (381)
T 1v2d_A 251 -TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVP----EGTYFLMAELPGW-D---AFR 321 (381)
T ss_dssp -HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECC----SBSSEEEEECTTC-C---HHH
T ss_pred -cccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC----CcceEEEEecChH-h---HHH
Confidence 123456666666677777553 33478889999999999999999988888765 3455778887533 2 545
Q ss_pred HHHhhCCeEEccCCCCC----CCcEEEEeecCCCCHHHHHHhhh
Q 017726 325 RAWQRYNLSLGLGLNKV----AGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.| +++||.+.+|..+. .++++||++....++.+...+.|
T Consensus 322 ~l-~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l 364 (381)
T 1v2d_A 322 LV-EEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERL 364 (381)
T ss_dssp HH-HHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHH
T ss_pred HH-HhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 45 56699999875432 35689999766333333333333
No 47
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.8e-32 Score=253.41 Aligned_cols=302 Identities=12% Similarity=0.068 Sum_probs=221.9
Q ss_pred CChHHHHHHHccCCCCC--CCCcHHHHHHHHHHHHHHHh----cCC-CC-ceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIF----KTT-SG-TPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~----~~~-~~-~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+.++.+.+++.+..... ..|.......++++.+++++ |.+ .+ +++++++|+++++..++.+++.+||+|++.
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~ 129 (412)
T 2x5d_A 50 PTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVP 129 (412)
T ss_dssp CCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEc
Confidence 46788999988865431 12222233567888888887 763 22 469999999999999999989999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
.|.|++.. ..++..|.+++.++.+.+ +.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 130 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 203 (412)
T 2x5d_A 130 NPSYPIHI--YGAVIAGAQVRSVPLVPGIDFFNELERAIRESI----PKPRMMILGFPSNPTAQCVELDFFERVVALAKQ 203 (412)
T ss_dssp ESCCHHHH--HHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCchhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc----cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 99888753 456778999999998764 2368899999887 46799999999999999987 5779999999
Q ss_pred cCCCcEEEEeeeeccCce----eecccc----ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAI----DFRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~----~~~~~~----~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+.. ..++.. .+.++++.|+||+++ ++| +|++++++++++++....
T Consensus 204 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~--------- 271 (412)
T 2x5d_A 204 --YDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN-MAGWRIGFMVGNPELVSALARIK--------- 271 (412)
T ss_dssp --HTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS-CTTSCCEEEEECHHHHHHHHHHH---------
T ss_pred --cCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccC-CcccceEEEEcCHHHHHHHHHHH---------
Confidence 9999999999987542 112211 367899999999995 344 699999999988776321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
. . ..++.+...+.++.++++... ..+++++++++++++++.+.|+++|+.+..+ .++.++++++++
T Consensus 272 ----~---~--~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~ 337 (412)
T 2x5d_A 272 ----S---Y--HDYGTFTPLQVAAIAALEGDQ-QCVRDIARQYQQRRDVLVKGLREAGWMVENP----KASMYVWAKIPE 337 (412)
T ss_dssp ----H---H--HCCCCCHHHHHHHHHHHHSCS-HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC----SBSSEEEEECCT
T ss_pred ----h---h--hccCCCHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCEecCC----CeeeEEEEEcCC
Confidence 0 0 023456555555555554321 2267888899999999999999888877655 345678888865
Q ss_pred CC---CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 316 HI---NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 316 ~~---~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
+. +..++++.|.+++||.+.+|..+ ..++++||++..
T Consensus 338 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~ 379 (412)
T 2x5d_A 338 PYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE 379 (412)
T ss_dssp TTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred ccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC
Confidence 65 67889999976669999987543 235689999866
No 48
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=255.56 Aligned_cols=326 Identities=13% Similarity=0.077 Sum_probs=234.8
Q ss_pred CcccccCCC--CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHc
Q 017726 9 KNHLFVPGP--VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 9 ~~~~~~~~p--~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~ 79 (367)
+.+.+..|- .+.|+.+.+++.+.... ...|.......++++.+++++ |.+ ++++|++|+|+++|+..++.+
T Consensus 58 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~ 137 (447)
T 3b46_A 58 ELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMG 137 (447)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHH
Confidence 345555542 24567888888775432 112222223457777777776 433 334699999999999999999
Q ss_pred cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC------------CCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW------------GEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
++.+||+|++..|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+
T Consensus 138 l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~ 211 (447)
T 3b46_A 138 LLNAGDEVIVFEPFFDQYI--PNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT----SKTKAVIINTPH 211 (447)
T ss_dssp HCCTTCEEEEEESCCTTHH--HHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC----TTEEEEEEESSC
T ss_pred HcCCCCEEEEeCCCchhHH--HHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc----cCCeEEEEeCCC
Confidence 9999999999999888753 45677899999998754 35789999999887 478999999999
Q ss_pred CCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee---ecc-----ccccceEEEecCCCcccCCCc--ceeeee
Q 017726 148 TATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID---FRM-----DEWGIDVALTGSQKALSLPTG--MGIVCA 214 (367)
Q Consensus 148 n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~-----~~~~~d~~~~s~~K~~~g~~g--~g~~~~ 214 (367)
||||.+++ +++|.++|++ +|+++|+|++|+.+... .++ ...+.++++.|+||+++ ++| +|++++
T Consensus 212 nptG~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~riG~~~~ 288 (447)
T 3b46_A 212 NPIGKVFTREELTTLGNICVK--HNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFA-ATGWRIGWVLS 288 (447)
T ss_dssp TTTCCCCCHHHHHHHHHHHHH--TTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTT-CTTSCCEEEEC
T ss_pred CCCCcccCHHHHHHHHHHHHH--cCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcC-CcchhhEEEEe
Confidence 99999974 7889999999 99999999999864321 111 12368999999999985 445 799999
Q ss_pred -CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc
Q 017726 215 -SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++++++.+.... . . ..++.+.....++.++++.....+ +++++++++++++++.+.|+++
T Consensus 289 ~~~~l~~~l~~~~-------------~---~--~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 350 (447)
T 3b46_A 289 LNAELLSYAAKAH-------------T---R--ICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL 350 (447)
T ss_dssp SCHHHHHHHHHHH-------------H---H--HTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-------------h---h--ccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999887765320 0 0 123455555666677777654333 7888999999999999999999
Q ss_pred CCccccCCCccCCCceEEEEcCCC---------------CCHHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEee
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSH---------------INSSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGH 350 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~L~~~~gv~v~~g~~~~-------~~~~iRi~~ 350 (367)
|+++..+ .++.+++++++.. .+..+++++|.+++||.+.+|..+. .++++||++
T Consensus 351 g~~~~~~----~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~ 426 (447)
T 3b46_A 351 GLPYTAP----EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV 426 (447)
T ss_dssp TCCEECC----SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEEC
T ss_pred CCeecCC----CeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEE
Confidence 8887765 3456778887531 3456899989877799999874332 157899998
Q ss_pred cCCCCHHHHHHhhhh
Q 017726 351 LGHLNEVMFNFQLLF 365 (367)
Q Consensus 351 ~~~~~~~~~~~~~l~ 365 (367)
....++.+...+.|.
T Consensus 427 ~~~~e~l~~~~~~l~ 441 (447)
T 3b46_A 427 CKDDAYLENAVERLK 441 (447)
T ss_dssp CSCHHHHHHHHHHGG
T ss_pred eCCHHHHHHHHHHHH
Confidence 653333344444443
No 49
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-32 Score=251.01 Aligned_cols=299 Identities=14% Similarity=0.087 Sum_probs=223.3
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+.... ...|.......++++.+++++ |.+ +++ ++++++|+++++..++.+++.+||+|++..
T Consensus 39 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~ 118 (376)
T 2dou_A 39 PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPE 118 (376)
T ss_dssp CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEES
T ss_pred CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECC
Confidence 567888888876532 223333356778999999888 875 323 699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
|.|++.. ..++..|.+++.++.+.++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++ +
T Consensus 119 p~y~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--~ 190 (376)
T 2dou_A 119 VAYPSYF--GAARVASLRTFLIPLREDGLADLKAVPEGVW----REAKVLLLNYPNNPTGAVADWGYFEEALGLARK--H 190 (376)
T ss_dssp SCCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGSCHHHH----HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH--T
T ss_pred CCcHhHH--HHHHHcCCEEEEeeCCCCCCCCHHHHHHhhc----cCceEEEECCCCCCcCccCCHHHHHHHHHHHHH--c
Confidence 9887753 4567789999999985455689999999987 36799999999999999987 5678899999 9
Q ss_pred CcEEEEeeeeccCce---e---ecc-ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 169 PALFLVDGVSSICAI---D---FRM-DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~---~---~~~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
|+++|+|++|+.+.. . ... ...+.++++.|+||+++ ++| +|++++++++++++....
T Consensus 191 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~------------- 256 (376)
T 2dou_A 191 GLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYN-LAGFRLGFALGSEEALARLERVK------------- 256 (376)
T ss_dssp TCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHT-CGGGCCEEEEECHHHHHHHHHHH-------------
T ss_pred CCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcC-ChhheeEEEecCHHHHHHHHHHH-------------
Confidence 999999999986432 1 111 12356899999999994 344 699999999988776321
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCH
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
.. +.++.+...+.++.++++.. +..+++.+++++++++++.+.|++. +.+..+ .++.+++++++++.+.
T Consensus 257 ~~-----~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~----~~~~~~~~~~~~~~~~ 325 (376)
T 2dou_A 257 GV-----IDFNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LSLLPP----RATMYLWGRLPEGVDD 325 (376)
T ss_dssp HH-----HCCCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCC----CBSSEEEEECCTTCCH
T ss_pred Hh-----cccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCC----CeeEEEEEECCCCCCH
Confidence 00 01234554445555555432 2236778888999999999999887 666544 3556788888766778
Q ss_pred HHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
.++.+.|.++ ||.+.+|..+. .++++||++..
T Consensus 326 ~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~ 359 (376)
T 2dou_A 326 LEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR 359 (376)
T ss_dssp HHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS
T ss_pred HHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC
Confidence 8999999877 99999875432 35789999765
No 50
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=7.5e-32 Score=242.55 Aligned_cols=304 Identities=11% Similarity=0.035 Sum_probs=227.1
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++++.+.+++.+.......|. .....++|+.++++++.+++ ++++|+|+++++..++.++ +||+|++..|.|+
T Consensus 26 ~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~~~-~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~ 101 (337)
T 3p1t_A 26 NPEAVEPRVQAAIAAAAARINRYP-FDAEPRVMRKLAEHFSCPED-NLMLVRGIDECFDRISAEF--SSMRFVTAWPGFD 101 (337)
T ss_dssp CCSCCCHHHHHHHHHHGGGTTSCC-TTHHHHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHS--TTSEEEEESSSCS
T ss_pred CCCCCCHHHHHHHHHhhhhhccCC-CCchHHHHHHHHHHhCcCHH-HEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcH
Confidence 466788999999888654322222 35678999999999998764 5999999999999999887 9999999999888
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
+.. ..++..|++++.++.+.++.+|+++++++ .+++++++++|+||||.++|++++.++|++ +++ +++|
T Consensus 102 ~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~--~~~-~ivD 170 (337)
T 3p1t_A 102 GYR--ARIAVSGLRHFEIGLTDDLLLDPNDLAQV------SRDDCVVLANPSNPTGQALSAGELDQLRQR--AGK-LLID 170 (337)
T ss_dssp HHH--HHHTTSCCEEEEECBCTTSSBCHHHHTTC------CTTEEEEEESSCTTTCCCCCHHHHHHHHHH--CSE-EEEE
T ss_pred HHH--HHHHHcCCEEEEecCCCCCCCCHHHHHhh------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--CCc-EEEE
Confidence 753 55778899999999988888999998765 256999999999999999999999999999 887 5569
Q ss_pred eeeccCce--eeccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCc
Q 017726 176 GVSSICAI--DFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS 252 (367)
Q Consensus 176 ~~~~~~~~--~~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (367)
++|+.... .......+.++++.|+||+++ .+.++|+++.++++++++.... ..++++
T Consensus 171 ea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~--------------------~~~~~~ 230 (337)
T 3p1t_A 171 ETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ--------------------WFCNVG 230 (337)
T ss_dssp CTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS--------------------CTTCSC
T ss_pred CCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc--------------------CCCCCC
Confidence 99873221 112222357899999999994 2344699999999988876431 133466
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCe
Q 017726 253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNL 332 (367)
Q Consensus 253 ~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv 332 (367)
...+.++..+++... .+++.+++..++++++.+.|+++|+.+..+ .+ .++++..+ +..++.+.|. ++||
T Consensus 231 ~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~~~~~~~~---~~~~~~~~l~-~~gi 299 (337)
T 3p1t_A 231 TLDLHALEAALDNDR--AREAHIAKTLAQRRRVADALRGLGYRVASS----EA-NFVLVENA---AGERTLRFLR-ERGI 299 (337)
T ss_dssp HHHHHHHHHHHTCHH--HHHHHHHHHHHHHHHHHHHHHHTTCCBCCC----SS-SEEEEECT---TTHHHHHHHH-HTTE
T ss_pred HHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHCcCEECCC----CC-eEEEEEcC---CHHHHHHHHH-HCCe
Confidence 655555555554321 255667777888999999999988877665 23 46667664 3467777775 5599
Q ss_pred EEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 333 SLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 333 ~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.+.+|..+..++++||++. ..++.+.+.++|++
T Consensus 300 ~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~ 332 (337)
T 3p1t_A 300 QVKDAGQFGLHHHIRISIG-REEDNDRLLAALAE 332 (337)
T ss_dssp ECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHH
T ss_pred EEEECccCCCCCeEEEecC-CHHHHHHHHHHHHH
Confidence 9999876655689999965 44555666666653
No 51
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=5.1e-32 Score=247.29 Aligned_cols=308 Identities=17% Similarity=0.142 Sum_probs=227.1
Q ss_pred HHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHH
Q 017726 22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWID 101 (367)
Q Consensus 22 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~ 101 (367)
+++++++.+.... |.......++++.++++++.-.++++++++||++|+..++.+++.+||+|++..+.|++.. .
T Consensus 46 ~~~~~~~~~~~~~---y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~--~ 120 (375)
T 3op7_A 46 EDFYKKLQGTKLN---YGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLY--D 120 (375)
T ss_dssp HHHHHHHHTSCCS---SCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHH--H
T ss_pred HHHHHHHhcCCcC---CCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHH--H
Confidence 4556665553322 2222345689999999985323345999999999999999999999999999999888754 4
Q ss_pred HHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEee
Q 017726 102 QQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 102 ~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~ 176 (367)
.++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++ +|+++|+|+
T Consensus 121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~--~~~~li~De 194 (375)
T 3op7_A 121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR----PTTKMICINNANNPTGAVMDRTYLEELVEIASE--VGAYILSDE 194 (375)
T ss_dssp HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHT--TTCEEEEEC
T ss_pred HHHHcCCEEEEEeccccCCCCCCHHHHHHhhc----cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEc
Confidence 5778899999998864 34579999999997 46799999999999999999 8999999999 999999999
Q ss_pred eeccCcee---eccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 177 VSSICAID---FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 177 ~~~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
+|+.+... .-....+.++++.|++|+++ .+| +|++++++++++++..... .+.+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~v~~~~~l~~~~~~~~~------------------~~~~~~ 255 (375)
T 3op7_A 195 VYRSFSELDVPSIIEVYDKGIAVNSLSKTYS-LPGIRIGWVAANHQVTDILRDYRD------------------YTMICA 255 (375)
T ss_dssp CSCCCSSSCCCCHHHHCTTEEEEEESSSSSS-CGGGCCEEEECCHHHHHHHTTTGG------------------GTTSCC
T ss_pred ccccccccCCCchhhhcCCEEEEeEChhhcC-CcccceEEEEeCHHHHHHHHHHHh------------------hhccCC
Confidence 98764432 11122356799999999995 334 6999999999888764311 012234
Q ss_pred cHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhC
Q 017726 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRY 330 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (367)
+.....+...+++...+. +++.++++.++++.+.+.|++. ++.+..+ ..+.+.++.++.+.+..++++.|.+++
T Consensus 256 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~ 330 (375)
T 3op7_A 256 GVFDDLVAQLALAHYQEI-LERNRHILEENLAILDQWIEEEPLVSYIRP----AVVSTSFVKIAVDMPMEDFCLQLLQEH 330 (375)
T ss_dssp CHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHCTTEEECCC----SSSSCEEEEECCSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHhhCCCceEecC----CCeEEEeEEcCCCCCHHHHHHHHHHhC
Confidence 555555555566543333 6777888899999999999997 7776665 344456677766678889999987666
Q ss_pred CeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 331 NLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 331 gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
||.+.+|..+..++++|+++....++.+...+.|
T Consensus 331 gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l 364 (375)
T 3op7_A 331 GVLLVPGNRFERDGYVRLGFACEQETLIKGLEKL 364 (375)
T ss_dssp CEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHH
T ss_pred CEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHH
Confidence 9999988665557889999765543344333333
No 52
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8e-33 Score=255.76 Aligned_cols=315 Identities=12% Similarity=0.070 Sum_probs=225.1
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ +++ ++++++|+++|+..++.+++.+||+|+++.
T Consensus 38 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~ 117 (411)
T 2o0r_A 38 DGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIE 117 (411)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3567788877764322 112221122345666666665 754 333 699999999999999999899999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHh
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDE 165 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~ 165 (367)
+.|++.. ..++..|.+++.++.+.+ +.+|+++++++++ +++++|++++|+||||.++|. ++|.++|++
T Consensus 118 ~~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~ 191 (411)
T 2o0r_A 118 PFYDSYS--PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT----PRTRALIINSPHNPTGAVLSATELAAIAEIAVA 191 (411)
T ss_dssp SCCTTHH--HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCcHhHH--HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc----cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9988853 456778999999998653 5689999999997 467999999999999999874 889999999
Q ss_pred cCCCcEEEEeeeeccCcee----eccc----cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAID----FRMD----EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~~~----~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+... .++. ..+.|+++.|++|+++ ++| +|++++++++++.+....
T Consensus 192 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~--------- 259 (411)
T 2o0r_A 192 --ANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN-CTGWKIGWACGPAELIAGVRAAK--------- 259 (411)
T ss_dssp --TTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT-CTTTCEEEEECCHHHHHHHHHHH---------
T ss_pred --cCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC-CccceEEEEeeCHHHHHHHHHHH---------
Confidence 99999999999865421 1221 1467999999999884 566 799999999887765321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
... .++.+.....++.++++.. +..++++++++.++++++.+.|++.|+++..+ ..+.+++++++.
T Consensus 260 ----~~~-----~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~ 325 (411)
T 2o0r_A 260 ----QYL-----SYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVHDS----YGTYFLCADPRP 325 (411)
T ss_dssp ----HHH-----TSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCC----CBSSEEEEECGG
T ss_pred ----hhc-----cCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCC----CeeEEEEEecCC
Confidence 000 1223333445555566543 23377888999999999999999888887665 345578888854
Q ss_pred --CCCHHHHHHHHHhhCCeEEccCCCC--C-----------CCcEEEEeecCCCCHHHHHHhhhh
Q 017726 316 --HINSSEIVRRAWQRYNLSLGLGLNK--V-----------AGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 316 --~~~~~~l~~~L~~~~gv~v~~g~~~--~-----------~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.+..++.++|.+++||.+.+|..+ . ..+++||++....++.+...+.|.
T Consensus 326 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~ 390 (411)
T 2o0r_A 326 LGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLS 390 (411)
T ss_dssp GTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 2567889998876669999987432 1 246799997543333344444443
No 53
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.8e-32 Score=253.07 Aligned_cols=318 Identities=13% Similarity=0.104 Sum_probs=230.9
Q ss_pred CCCCChHHHHHHHccCCCC-----C-CCCcHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 16 GPVHIPDQVIRAMNRNNED-----Y-RSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~-----~-~~~~~~~~~~~~~~~la~~~~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.|.+.++.+++++.+.... + ......+..+++++.+++++|.+ +++++++++|+++++..++.+++.+||+|
T Consensus 50 ~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~v 129 (407)
T 3nra_A 50 DAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKV 129 (407)
T ss_dssp TTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEE
Confidence 3456778888887775321 1 12234567788888888888875 22469999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeC------CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVES------DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~------~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
++..+.|++.. ..++..|.+++.++. +.++.+|++++++++++ ++++|++++|+||||.++| +++
T Consensus 130 l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~ 203 (407)
T 3nra_A 130 AIVQPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----GARVFLFSNPNNPAGVVYSAEEIGQ 203 (407)
T ss_dssp EEEESCCTHHH--HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT----TCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEcCCcccchH--HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh----CCcEEEEcCCCCCCCcccCHHHHHH
Confidence 99999888743 567889999999998 35678899999999984 6799999999999999998 888
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCcee----ecc-----ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCC
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAID----FRM-----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~-----~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
|.++|++ +|+++|+|++|+.+... ..+ ...+.++++.|+||+++ ++.++|++++++++++.+....
T Consensus 204 i~~~~~~--~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~-- 279 (407)
T 3nra_A 204 IAALAAR--YGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ-- 279 (407)
T ss_dssp HHHHHHH--HTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHH--
T ss_pred HHHHHHH--cCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHH--
Confidence 9999999 99999999999864321 111 12456799999999985 2234799999999888776321
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCc
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDT 307 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 307 (367)
.. +..+++.....++..++... +..+++.+++.+++++++.+.|+++ ++.+..+ ..+.
T Consensus 280 -----------~~-----~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~ 338 (407)
T 3nra_A 280 -----------AI-----VSLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTP----QAGS 338 (407)
T ss_dssp -----------HH-----HTSSSCHHHHGGGGGTTCCC-TTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCC----SBSS
T ss_pred -----------hh-----hccCCChHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCceeccC----CeeE
Confidence 00 01123443323333233210 1226778888999999999999998 8887665 3445
Q ss_pred eEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 308 VTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 308 ~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
++++.++. +.+..++.+.|.+++||.+.+|..+ ....++||++....++.+...+.|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l 398 (407)
T 3nra_A 339 YLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRI 398 (407)
T ss_dssp EECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 66777765 5678899999977779999987543 346789999875333333333333
No 54
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=2.2e-32 Score=254.23 Aligned_cols=315 Identities=12% Similarity=0.062 Sum_probs=226.9
Q ss_pred CChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ .++ ++++++|+++|+..++.+++.+||+|+
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl 129 (429)
T 1yiz_A 50 HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVI 129 (429)
T ss_dssp CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEE
Confidence 4577888888765432 112221122345666666664 753 334 699999999999999999899999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCCC----------CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG----------EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~----------~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
+..|.|++.. ..++..|.+++.++.+.+ +.+|+++++++++ +++++|++++|+||||.++|
T Consensus 130 ~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~ 203 (429)
T 1yiz_A 130 IIEPFFDCYE--PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN----EKTKMIIINTPHNPLGKVMDRAE 203 (429)
T ss_dssp EEESCCTTHH--HHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHH
T ss_pred EcCCCchhHH--HHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc----cCceEEEECCCCCCCCccCCHHH
Confidence 9999888754 456778999999998753 4689999999987 47799999999999999985
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCce------ee-ccc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAI------DF-RMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTA 225 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~------~~-~~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~ 225 (367)
+++|.++|++ +|+++|+|++|+.+.. ++ ... ..+.|+++.|+||+++ ++| +|++++++++++.+...
T Consensus 204 l~~i~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~ 280 (429)
T 1yiz_A 204 LEVVANLCKK--WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFS-LTGWKIGWAYGPEALLKNLQMV 280 (429)
T ss_dssp HHHHHHHHHH--HTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHT-CGGGCCEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccC-CCCcceEEEEeCHHHHHHHHHH
Confidence 8889999999 9999999999875322 12 121 3468999999999984 556 79999999988877532
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH-----HH-HhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-----IF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-----~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
. . . ..++.+...+.++.++++. .. +..+++++++++++++++.+.|+++|+.+..+
T Consensus 281 ~---------------~-~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 342 (429)
T 1yiz_A 281 H---------------Q-N--CVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVP 342 (429)
T ss_dssp H---------------H-T--TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEEC
T ss_pred H---------------h-h--cccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 1 0 1 1334566555566666655 21 12278888999999999999999988877665
Q ss_pred CCccCCCceEEEEcCCC------------CCHHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEeecCCCCHHHHH
Q 017726 300 KEEWFSDTVTAVIVPSH------------INSSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~~------------~~~~~l~~~L~~~~gv~v~~g~~~~-------~~~~iRi~~~~~~~~~~~~ 360 (367)
..+.+++++++.. .+..++.++|.+++||.+.+|..+. .++++||++....++.+..
T Consensus 343 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~ 418 (429)
T 1yiz_A 343 ----QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKA 418 (429)
T ss_dssp ----SBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHH
T ss_pred ----CcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHH
Confidence 3456788888643 3466888988766799999874322 2568999986433333333
Q ss_pred Hhhh
Q 017726 361 FQLL 364 (367)
Q Consensus 361 ~~~l 364 (367)
.+.|
T Consensus 419 l~~l 422 (429)
T 1yiz_A 419 AEIL 422 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 55
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=1.3e-32 Score=252.39 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=216.6
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ .++++++++|+++|+..++.+++.+||+|+++.+
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~ 122 (388)
T 1j32_A 43 NTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122 (388)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESS
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 4567788777664321 112221122345555565555 543 3356999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
+|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 123 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~-- 194 (388)
T 1j32_A 123 FWVSYP--EMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT----PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVE-- 194 (388)
T ss_dssp CCTHHH--HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CChhHH--HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC----cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence 888753 45677899999999875 46789999999997 46799999999999999975 8889999999
Q ss_pred CCcEEEEeeeeccCcee----ec---cc--cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAID----FR---MD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~----~~---~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+... .+ +. ..+.|+++.|+||++ |++| +|++++++++++++....
T Consensus 195 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~---------- 263 (388)
T 1j32_A 195 AGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVPLVKAATKIQ---------- 263 (388)
T ss_dssp HTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHHHHHHHHHHH----------
T ss_pred cCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeCHHHHHHHHHHH----------
Confidence 99999999998764321 11 11 135799999999999 4566 799999999887775321
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
..+ .++.+.....+..++++.. +..++++++++.++++++.+.|+++ |+.+..+ .++.++++.++.
T Consensus 264 -----~~~---~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~~~~~~~~~~~ 330 (388)
T 1j32_A 264 -----GHS---TSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKP----DGAFYMFPSIAK 330 (388)
T ss_dssp -----HTT---TCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC----CBTTEECCBCGG
T ss_pred -----hhc---ccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC----CeeEEEEEecCC
Confidence 111 1234443333333344321 1226778889999999999999998 8887665 344455566643
Q ss_pred -CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 316 -HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 316 -~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
+.+..++.+.|.+++||.+.+|..+..++++|+++.
T Consensus 331 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~ 367 (388)
T 1j32_A 331 TGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA 367 (388)
T ss_dssp GTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC
T ss_pred CCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec
Confidence 457889999998656999998865444678999975
No 56
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=3.9e-32 Score=249.49 Aligned_cols=312 Identities=13% Similarity=0.064 Sum_probs=222.1
Q ss_pred CCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++++.+.+++.+.... ...|.......++|+.++++++ .+ .++++++|+|+++|+..++.+++.+||+|++..
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~ 122 (391)
T 3h14_A 43 TGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGA 122 (391)
T ss_dssp SCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcC
Confidence 35578888888875443 2233322335677777777764 22 334699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
|.|++.. ..++..|.+++.++.+.+ +.+|+++++++ ++++|++++|+||||.++| +++|.++|++
T Consensus 123 p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~-------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~- 192 (391)
T 3h14_A 123 PGYPSYR--QILRALGLVPVDLPTAPENRLQPVPADFAGL-------DLAGLMVASPANPTGTMLDHAAMGALIEAAQA- 192 (391)
T ss_dssp SCCHHHH--HHHHHTTCEEEEEECCGGGTTSCCHHHHTTS-------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH-
T ss_pred CCCccHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHhc-------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHH-
Confidence 9887754 557788999999998764 36799888765 3589999999999999997 7788899999
Q ss_pred CCCcEEEEeeeeccCce---eecccc-ccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 167 RHPALFLVDGVSSICAI---DFRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~---~~~~~~-~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+++|+|++|+.+.. +.+... .+.++++.|++|+++ ++.++|++++++++++.+....
T Consensus 193 -~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--------------- 256 (391)
T 3h14_A 193 -QGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIA--------------- 256 (391)
T ss_dssp -TTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHH---------------
T ss_pred -cCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHH---------------
Confidence 9999999999985432 122211 246799999999994 3344799999999887765321
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccc-cCCCccCCCceEEEEcCC-CCCH
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC-TQKEEWFSDTVTAVIVPS-HINS 319 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 319 (367)
.. +.++++.....++.+++. ....+++.++++.++++++.+.|++.++... .+ ..+.++++.++. +.+.
T Consensus 257 ~~---~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 327 (391)
T 3h14_A 257 QN---MFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPP----DGAFYVYADVSDLTDDS 327 (391)
T ss_dssp HH---TTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCC----CBTTEEEEECTTTCSCH
T ss_pred hh---hccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC----CeeEEEEEecCccCCCH
Confidence 00 123466655555555555 2333788899999999999999999865543 33 344567777765 5678
Q ss_pred HHHHHHHHhhCCeEEccCCCCCC---CcEEEEeecCCCCHHHHHHhhh
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKVA---GKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~~---~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.++++.|.+++||.+.+|..+.. ++++||++....++.+...+.|
T Consensus 328 ~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l 375 (391)
T 3h14_A 328 RAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRL 375 (391)
T ss_dssp HHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHH
Confidence 89999988777999998855433 5689999776333333333333
No 57
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=9.6e-33 Score=256.35 Aligned_cols=301 Identities=13% Similarity=0.056 Sum_probs=225.1
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc-----CCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK-----TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~-----~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++++.+.+++.+.... ...|.......++|+.++++++ ++. +++++|+||++|+..++.+++.+||+|+++
T Consensus 70 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-~~v~~t~g~t~al~~~~~~l~~~gd~vl~~ 148 (427)
T 3dyd_A 70 LPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEA-KDVILTSGCSQAIDLCLAVLANPGQNILVP 148 (427)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCG-GGEEEESSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCCh-HHEEEecCcHHHHHHHHHHhcCCCCEEEEc
Confidence 47889999998875432 1233333456799999999998 444 459999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
.|.|+++. ..++..|.+++.++.++ ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 149 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~ 222 (427)
T 3dyd_A 149 RPGFSLYK--TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLID----EKTACLIVNNPSNPCGSVFSKRHLQKILAVAAR 222 (427)
T ss_dssp ESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHhc----cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99887643 56788899999998763 45789999999987 46799999999999999999 8999999999
Q ss_pred cCCCcEEEEeeeeccCce----eecccccc---ceEEEecCCCcccCCCc--ceeeeeC-------HHHHHHhccCCCCc
Q 017726 166 YRHPALFLVDGVSSICAI----DFRMDEWG---IDVALTGSQKALSLPTG--MGIVCAS-------PKALEASKTAKSVR 229 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~----~~~~~~~~---~d~~~~s~~K~~~g~~g--~g~~~~~-------~~~~~~~~~~~~~~ 229 (367)
+|+++|+|++|+.+.. ..+....+ ..+++.|+||.++ .+| +|+++++ +++.+.+...
T Consensus 223 --~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~-~~G~riG~~~~~~~~~~~~~~i~~~l~~~---- 295 (427)
T 3dyd_A 223 --QCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWL-VPGWRLGWILIHDRRDIFGNEIRDGLVKL---- 295 (427)
T ss_dssp --TTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSS-CGGGCCEEEEEECSTTSSHHHHHHHHHHH----
T ss_pred --CCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCC-CcCcceEEEEecCcchhhHHHHHHHHHHH----
Confidence 9999999999986432 11222222 2377889999874 444 6999887 3555444321
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCce
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTV 308 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 308 (367)
... .++++.....++.++++......++++++++.++++++.+.|+++ |+.+..+ ..+.+
T Consensus 296 ------------~~~---~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p----~~g~~ 356 (427)
T 3dyd_A 296 ------------SQR---ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRP----SGAMY 356 (427)
T ss_dssp ------------HHH---HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECC----SBTTE
T ss_pred ------------Hhc---cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CeeEE
Confidence 000 224666666666666664333447788899999999999999998 8877665 34556
Q ss_pred EEEEcC-----CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 309 TAVIVP-----SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 309 ~~~~~~-----~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
+++.++ ++.+..+++++|.+++||.+.+|..+..++++||++.
T Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~ 404 (427)
T 3dyd_A 357 LMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT 404 (427)
T ss_dssp EEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC
T ss_pred EEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC
Confidence 677764 2356788999997667999999866656789999975
No 58
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.3e-32 Score=253.67 Aligned_cols=333 Identities=11% Similarity=-0.037 Sum_probs=230.0
Q ss_pred CCChHHHHHHHccCCC-CC-CCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHccC--CCCC--
Q 017726 18 VHIPDQVIRAMNRNNE-DY-RSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNTL--SPGD-- 85 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~-~~-~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~~--~~gd-- 85 (367)
.+.++.+.+++.+... .. ..|.......++|+.++++++ +++ +++++|+|+++++..++.+++ .+||
T Consensus 56 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-~~i~~t~g~t~al~~~~~~l~~~~~gd~~ 134 (437)
T 3g0t_A 56 LPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPA-RACVPTVGSMQGCFVSFLVANRTHKNREY 134 (437)
T ss_dssp SCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHTTSCTTCSC
T ss_pred CCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCc-ccEEEeCCHHHHHHHHHHHHhcCCCCCcc
Confidence 4567888888876533 11 222222233577777777776 333 459999999999999999988 9999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRK 161 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~ 161 (367)
+|+++.+.|++.. ..++..|.+++.++.+. ++.+|++++++++.+ +++++|++++|+||||.++| +++|.+
T Consensus 135 ~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~ 209 (437)
T 3g0t_A 135 GTLFIDPGFNLNK--LQCRILGQKFESFDLFEYRGEKLREKLESYLQT---GQFCSIIYSNPNNPTWQCMTDEELRIIGE 209 (437)
T ss_dssp CEEEEESCCHHHH--HHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT---TCCCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCCcHhHH--HHHHHcCCEEEEEeecCCCCccCHHHHHHHHhc---CCceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 9999999887743 55678899999999863 446899999999942 47799999999999999997 667889
Q ss_pred HHHhcCCCcEEEEeeeeccCce----e--------ecccc-ccceEEEecCCCccc-CCCcceeeeeCHHHHH-HhccCC
Q 017726 162 LLDEYRHPALFLVDGVSSICAI----D--------FRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALE-ASKTAK 226 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~----~--------~~~~~-~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~-~~~~~~ 226 (367)
+|++ +|+++|+|++|+.+.. + ..+.. .+.++++.|+||+++ .+.++|++++++++++ ++....
T Consensus 210 ~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 287 (437)
T 3g0t_A 210 LATK--HDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLE 287 (437)
T ss_dssp HHHH--TTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGH
T ss_pred HHHH--CCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhccc
Confidence 9999 9999999999975322 1 12222 467799999999985 2234799999999887 521100
Q ss_pred CCceeechH-HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHcCCccc------
Q 017726 227 SVRVFFDWK-DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG--LENVIERHRRLGKATRLAVEAWGLKNC------ 297 (367)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g--~~~~~~~~~~~~~~l~~~L~~~g~~~~------ 297 (367)
.......+. ......... ..++++.....++..+++...... ++++++++.++++++.+.|+++|+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 365 (437)
T 3g0t_A 288 ESFGRLRFGEALSSSALYA--LSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGN 365 (437)
T ss_dssp HHHSCSBHHHHHHTTHHHH--HHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETT
T ss_pred ccccccchhHHHHHHHHhh--hcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCC
Confidence 000000000 000001101 133566666666666666644321 788899999999999999999888777
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC--CcEEEEeecC-CCCHHHHHHhhhh
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA--GKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~--~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
.+. ..+.++++.++ +.+..++.+.|.++ ||.+.++..+.. ++++||++.. ..++.+...+.|.
T Consensus 366 ~~~---~~~~~~~~~~~-~~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~ 431 (437)
T 3g0t_A 366 EPL---ADGFYFTVGYK-GMDSSKLIEKFVRY-GMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQ 431 (437)
T ss_dssp EEC---CSSSEEEEEET-TCCHHHHHHHHHHT-TEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHH
T ss_pred CCC---ceeEEEEEecC-CCCHHHHHHHHHHc-CeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHH
Confidence 120 24557888886 77889999999865 999998865432 2679999764 3334444444443
No 59
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1.7e-31 Score=245.21 Aligned_cols=315 Identities=10% Similarity=-0.006 Sum_probs=230.0
Q ss_pred CChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 19 HIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
+.++.+.+++.+.... .......+..+++++.+++.+|.+ .++++++++|+++++..++.+++.+||+|++..+.|
T Consensus 45 ~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~ 124 (391)
T 4dq6_A 45 KAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVY 124 (391)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCC
Confidence 5578888888775432 122234677888889999999843 234599999999999999999999999999999988
Q ss_pred chHHHHHHHHHhCCceEEEeCC--C--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cHHHHHHHHHhcC
Q 017726 95 FSLLWIDQQQRLNFNVDVVESD--W--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEYR 167 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~--~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~~~ 167 (367)
++.. ..++..|.+++.++.+ . ++.+|+++++++++ + +++|++++|+||||.++ ++++|.++|++
T Consensus 125 ~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~-- 195 (391)
T 4dq6_A 125 SPFN--SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK----D-VKLFILCNPHNPVGRVWTKDELKKLGDICLK-- 195 (391)
T ss_dssp THHH--HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT----T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHH--
T ss_pred HHHH--HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh----c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence 8753 4567889999999887 2 23589999999997 3 69999999999999995 47788888999
Q ss_pred CCcEEEEeeeeccCce----eeccccc-----cceEEEecCCCccc-CCCcceeeeeCH-HHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAI----DFRMDEW-----GIDVALTGSQKALS-LPTGMGIVCASP-KALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~----~~~~~~~-----~~d~~~~s~~K~~~-g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+.. ..+.... +..+++.|+||+++ ++.++|++++++ ++++.+....
T Consensus 196 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------- 265 (391)
T 4dq6_A 196 HNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAF---------- 265 (391)
T ss_dssp TTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH----------
T ss_pred cCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHH----------
Confidence 9999999999986432 1222222 34589999999994 223469998875 7776665321
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...+ .++++...+.++.+++....+. ++++++++.++++++.+.|++ + |+.+..+ ..+.++++.++
T Consensus 266 -----~~~~--~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~ 333 (391)
T 4dq6_A 266 -----TRID--IKRNNCFSLVATEASYNNGESW-LESFLEYLESNIDFAIKYINENMPKLKVRKP----EGTYLLWVDFS 333 (391)
T ss_dssp -----HHTT--CCCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHCTTSEECCC----SBSSEEEEECG
T ss_pred -----Hhhc--CCCCCHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCEecCC----CccEEEEEEhh
Confidence 1111 3356766666666666653222 778889999999999999998 4 8888776 45556678886
Q ss_pred C-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 315 S-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 315 ~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
. +.+..++.+.|.+++||.+.+|..+ ..++++||++....++.+...+.|
T Consensus 334 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l 386 (391)
T 4dq6_A 334 ALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRI 386 (391)
T ss_dssp GGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 5 5788999999987779999987443 345789999764333333333333
No 60
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=1.9e-31 Score=244.75 Aligned_cols=306 Identities=12% Similarity=0.078 Sum_probs=225.0
Q ss_pred CCChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 18 VHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.+.++.+.+++.+.... ...+...+..+++++.+++.+|.+ .++++++++|+++++..++.+++.+||+|++..+.
T Consensus 39 ~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~ 118 (391)
T 3dzz_A 39 FKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPV 118 (391)
T ss_dssp SCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCC
Confidence 35678888888775432 112224566677777777777743 23469999999999999999999999999999998
Q ss_pred cchHHHHHHHHHhCCceEEEeCCC---CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cHHHHHHHHHhcC
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEYR 167 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~---~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~~~ 167 (367)
|++.. ..++..|.+++.++.+. ++.+|++++++++++ +++++|++++|+||||.++ ++++|.++|++
T Consensus 119 ~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~-- 191 (391)
T 3dzz_A 119 YNMFY--SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT---PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAK-- 191 (391)
T ss_dssp CHHHH--HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH--
T ss_pred cHHHH--HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc---cCceEEEEECCCCCCCcccCHHHHHHHHHHHHH--
Confidence 87743 55778899999998852 234899999999974 4689999999999999995 57889999999
Q ss_pred CCcEEEEeeeeccCce----eecccccc---ce--EEEecCCCccc-CCCcceeeeeC-HHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAI----DFRMDEWG---ID--VALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~----~~~~~~~~---~d--~~~~s~~K~~~-g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+.. ..+..... .| +++.|+||+++ ++.++|+++++ +++++++....
T Consensus 192 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------- 261 (391)
T 3dzz_A 192 HQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF---------- 261 (391)
T ss_dssp TTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH----------
T ss_pred CCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH----------
Confidence 9999999999985432 22222221 34 99999999984 23447999987 88877765320
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...+ .++++...+.++.+++....+ .+++++++..++++++.+.|++ + |+.+..+ ..+.++++.++
T Consensus 262 ----~~~~---~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~ 329 (391)
T 3dzz_A 262 ----FLAG---IGEPNLLAIPAAIAAYEEGHD-WLRELKQVLRDNFAYAREFLAKEVPEVKVLDS----NASYLAWVDIS 329 (391)
T ss_dssp ----HHHT---CSSCCTTHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC----CBSSEEEEECG
T ss_pred ----Hhhc---cCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhCCCcEEecc----CceEEEEEehh
Confidence 0001 234555555566666655322 2778889999999999999999 4 8888776 35556678875
Q ss_pred C-CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 315 S-HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 315 ~-~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
. +.+..++.++|.+++||.+.+|..+. ..+++||++..
T Consensus 330 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~ 370 (391)
T 3dzz_A 330 ALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC 370 (391)
T ss_dssp GGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS
T ss_pred hcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 4 46888999999755699999885432 34789999763
No 61
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=1.6e-31 Score=244.65 Aligned_cols=326 Identities=9% Similarity=-0.015 Sum_probs=231.9
Q ss_pred CcccccCC--CCCChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCC
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLS 82 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~ 82 (367)
+.+.+.-| +.+.++.+.+++.+.... .......+..+++++.+++.+|.+ .++++++++|+++++..++.+++.
T Consensus 25 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~~ 104 (383)
T 3kax_A 25 ELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTK 104 (383)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHCC
T ss_pred CeeecccccCCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhCC
Confidence 33444433 334678888888775422 112224466778888888888843 234699999999999999999999
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL--- 156 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~--- 156 (367)
+||+|++..+.|++.. ..++..|.+++.++.+.+ +.+|+++++++++ +++++|++++|+||||.++|.
T Consensus 105 ~gd~vl~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l 178 (383)
T 3kax_A 105 ENESVLVQPPIYPPFF--EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQ----QGVKLMLLCSPHNPIGRVWKKEEL 178 (383)
T ss_dssp TTCEEEECSSCCHHHH--HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT----TTCCEEEEESSBTTTTBCCCHHHH
T ss_pred CCCEEEEcCCCcHHHH--HHHHHcCCEEEeccceecCCcEEEcHHHHHHHhC----cCCeEEEEeCCCCCCCcCcCHHHH
Confidence 9999999999887753 557788999999988643 3489999999995 578999999999999999874
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCcee----ecccc-----ccceEEEecCCCccc-CCCcceeeee-CHHHHHHhccC
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAID----FRMDE-----WGIDVALTGSQKALS-LPTGMGIVCA-SPKALEASKTA 225 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~-----~~~d~~~~s~~K~~~-g~~g~g~~~~-~~~~~~~~~~~ 225 (367)
++|.++|++ +|+++|+|++|+.+... .+... .+.++++.|++|+++ ++.++|++++ ++++++.+...
T Consensus 179 ~~l~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 256 (383)
T 3kax_A 179 TKLGSLCTK--YNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSI 256 (383)
T ss_dssp HHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHH
Confidence 556666998 99999999998764321 12211 145699999999995 2234689887 67877766532
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCcc
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEW 303 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~ 303 (367)
. ...+ .++++...+.++.+++....+ .++++++++.++++++.+.|++. |+.+..+
T Consensus 257 ~---------------~~~~--~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---- 314 (383)
T 3kax_A 257 Q---------------YRQG--FHGLNIFAYTAMQSAYTECND-WLNEIRFYIEDNAKFACEYIKDHIPTLSVMKP---- 314 (383)
T ss_dssp H---------------HHTT--CCCCCHHHHHHHHHHTTTCHH-HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC----
T ss_pred H---------------hhcc--cCCCCHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHhhCCCceEecC----
Confidence 1 0011 235666655666656554222 26788889999999999999984 8888776
Q ss_pred CCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 304 FSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.++.++++.++. +.+..++++.|.+++||.+.+|..+ ...+++||++....++.+...+.|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l 378 (383)
T 3kax_A 315 EGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRL 378 (383)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSCHHHHHHHHHHH
T ss_pred CceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 455566688754 4688899999986779999988543 335789999764333333333333
No 62
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=100.00 E-value=1e-31 Score=250.00 Aligned_cols=329 Identities=14% Similarity=0.112 Sum_probs=229.3
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCC-----CCCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
....|++.+++.++++.+++++.+.... ...+. ..+...++++++++++|.+++ ++++++|+++++..++
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~ 95 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ-DIIFTSGGTESNNLVI 95 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESCHHHHHHHHH
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEeCChHHHHHHHH
Confidence 3567888888889999999999875321 11221 335578999999999998654 5999999999999998
Q ss_pred HccC--------CCCCeEEEEeCCcc-------------hHH--HHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcc
Q 017726 78 TNTL--------SPGDRIISFLIGQF-------------SLL--WIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAAD 133 (367)
Q Consensus 78 ~~~~--------~~gd~vl~~~~~~~-------------~~~--~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~ 133 (367)
.++. .+||+|++..|.|+ +.. +...++..|.+++.++.+. ++.+|+++++++++
T Consensus 96 ~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~-- 173 (432)
T 3a9z_A 96 HSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR-- 173 (432)
T ss_dssp HHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC--
T ss_pred HHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc--
Confidence 8765 48876666666543 322 3344566799999999875 67789999999987
Q ss_pred CCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC----------cEEEEeeeeccCceeeccccccceEEEecCCCcc
Q 017726 134 TAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP----------ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKAL 203 (367)
Q Consensus 134 ~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~----------~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~ 203 (367)
+++++|++++++||||.+.|+++|.++|++ ++ +++|+|++|+.+..++++...+.|++++|+||++
T Consensus 174 --~~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~ 249 (432)
T 3a9z_A 174 --PTTCLVTIMLANNETGVIMPISEISRRIKA--LNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFY 249 (432)
T ss_dssp --TTEEEEECCSBCTTTCBBCCHHHHHHHHHH--HHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTT
T ss_pred --CCceEEEEECcccCcccccCHHHHHHHHHh--cCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhc
Confidence 467999999999999999999999999999 77 9999999999887666655557899999999987
Q ss_pred cCCCcceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Q 017726 204 SLPTGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLG 282 (367)
Q Consensus 204 ~g~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~ 282 (367)
|+. +|+++++++. ..++.+....... ... +..++++...+.++.++++.+.+ +++++.+++.+++
T Consensus 250 -g~~-~G~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~a~~aal~~~~~-~~~~~~~~~~~~~ 315 (432)
T 3a9z_A 250 -GPR-IGALYVRGVGKLTPLYPMLFGGGQ------ERN-----FRPGTENTPMIAGLGKAADLVSE-NCETYEAHMRDIR 315 (432)
T ss_dssp -CCS-CEEEEETTBTTTBCCCCSCCSSCG------GGG-----TSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred -CCc-ceEEEEccccccCCcCceeecCCc------ccc-----ccCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 566 8999998765 2222221110000 011 22456888888888888887765 5888999999999
Q ss_pred HHHHHHHHHc-CCccc--cCC-CccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCC----------------
Q 017726 283 KATRLAVEAW-GLKNC--TQK-EEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKV---------------- 341 (367)
Q Consensus 283 ~~l~~~L~~~-g~~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~---------------- 341 (367)
+++.+.|+++ |+.+. .+. .....+.++.|.+++ +.+..++.+.+ .++.+..|....
T Consensus 316 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~ 392 (432)
T 3a9z_A 316 DYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC---QTLLASVGASCHSDHEDRPSPVLLSCGI 392 (432)
T ss_dssp HHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTC
T ss_pred HHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh---cCeEEeccccccCCCCCCccHHHHhcCC
Confidence 9999999995 76543 221 112344467777754 34566676655 266666553211
Q ss_pred ----CCcEEEEeecCCCCHHHH
Q 017726 342 ----AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 342 ----~~~~iRi~~~~~~~~~~~ 359 (367)
.++++||++....+.+|+
T Consensus 393 ~~~~~~~~iRis~~~~~t~eei 414 (432)
T 3a9z_A 393 PVDVARNAVRLSVGRSTTRAEV 414 (432)
T ss_dssp CHHHHTTEEEEECCTTCCHHHH
T ss_pred CccccCceEEEEcCCCCCHHHH
Confidence 136899998765554433
No 63
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.3e-31 Score=244.66 Aligned_cols=298 Identities=11% Similarity=0.011 Sum_probs=219.7
Q ss_pred CCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.+.++.+.+++.+.... ...|.. .. .++|+.++++++ .++ +++++++|+++++..++.+++.+||+|++.
T Consensus 35 ~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~-~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~ 111 (377)
T 3fdb_A 35 FSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP-EWIFPIPDVVRGLYIAIDHFTPAQSKVIVP 111 (377)
T ss_dssp SCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHSCTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH-HHEEEeCChHHHHHHHHHHhcCCCCEEEEc
Confidence 35678888888775432 112221 22 577888888777 544 459999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.+.|++.. ..++..|.+++.++.+.+ +|++++++++++ +++++++++|+||||.++| +++|.++|++
T Consensus 112 ~~~~~~~~--~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-- 181 (377)
T 3fdb_A 112 TPAYPPFF--HLLSATQREGIFIDATGG--INLHDVEKGFQA----GARSILLCNPYNPLGMVFAPEWLNELCDLAHR-- 181 (377)
T ss_dssp ESCCTHHH--HHHHHHTCCEEEEECTTS--CCHHHHHHHHHT----TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHH--
T ss_pred CCCcHhHH--HHHHHcCCEEEEccCCCC--CCHHHHHHHhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHH--
Confidence 99888753 557778999999999876 999999999984 5699999999999999986 5667777989
Q ss_pred CCcEEEEeeeeccCcee-----eccc---cccceEEEecCCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAID-----FRMD---EWGIDVALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~-----~~~~---~~~~d~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+... .++. ..+.++++.|++|+++ .+| +|+++. ++++++.+.....
T Consensus 182 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~~--------- 251 (377)
T 3fdb_A 182 YDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWN-IAGLKCAQIIFSNPSDAEHWQQLSP--------- 251 (377)
T ss_dssp TTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTT-CGGGCCEEEECCSHHHHHHHHHSCH---------
T ss_pred cCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhcc-CcchhheEEEeCCHHHHHHHHHHHH---------
Confidence 99999999999863321 1221 1345699999999993 444 687665 7888777754210
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...++++...+.++.+++.... ..++++++++.++++++.+.|++. |+.+..+ ..+.++++.++
T Consensus 252 ---------~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~ 317 (377)
T 3fdb_A 252 ---------VIKDGASTLGLIAAEAAYRYGT-DFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM----QATYLMWIDFR 317 (377)
T ss_dssp ---------HHHCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC----SBCSEEEEECT
T ss_pred ---------hhcCCCCHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC----CeeEEEEEECc
Confidence 0123466655556555665432 226788899999999999999994 8888776 45556678886
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
......++++.|.+++||.+.+|..+. .++++||++..
T Consensus 318 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~ 357 (377)
T 3fdb_A 318 DTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT 357 (377)
T ss_dssp TSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred ccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC
Confidence 521236788888777799999875432 35789999765
No 64
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=6e-32 Score=245.47 Aligned_cols=306 Identities=12% Similarity=0.060 Sum_probs=228.1
Q ss_pred CCCChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 17 PVHIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
|.++++.+.+++.+.... ...|.. ....++|+.+++++|.+++ ++++++|+++|+..++.+++.+||+|++..+
T Consensus 37 ~~~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~lr~~la~~~g~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p 114 (360)
T 3hdo_A 37 PYPPSPEVVKAILEELGPDGAALRIYPS-ASSQKLREVAGELYGFDPS-WIIMANGSDEVLNNLIRAFAAEGEEIGYVHP 114 (360)
T ss_dssp SSCCCHHHHHHHHHHHTTTCGGGGSCCC-SSCHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHhcccchhhcCCC-CchHHHHHHHHHHhCcCcc-eEEEcCCHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 456788899988875433 112211 1246899999999997654 5999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEE
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALF 172 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~v 172 (367)
.|++.. ..++..|.+++.++.+.++.+ +++++. .+++++++++|+||||.++|++++.++|++ +|+++
T Consensus 115 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~--~~l~~~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~--~~~~l 182 (360)
T 3hdo_A 115 SYSYYG--TLAEVQGARVRTFGLTGDFRI--AGFPER------YEGKVFFLTTPNAPLGPSFPLEYIDELARR--CAGML 182 (360)
T ss_dssp SCTHHH--HHHHHHTCEEEEECBCTTSSB--TTCCSS------BCSSEEEEESSCTTTCCCCCHHHHHHHHHH--BSSEE
T ss_pred ChHHHH--HHHHHCCCEEEEeeCCCCCCH--HHHHhh------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHH--CCCEE
Confidence 887753 557788999999998766554 443322 245799999999999999999999999999 89999
Q ss_pred EEeeeeccCce--eecc-ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 173 LVDGVSSICAI--DFRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 173 i~D~~~~~~~~--~~~~-~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
|+|++|+.... ..+. ...+.++++.|++|+++ ++.++|++++++++++++..... .
T Consensus 183 i~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--------------------~ 242 (360)
T 3hdo_A 183 VLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD--------------------H 242 (360)
T ss_dssp EEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC--------------------S
T ss_pred EEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC--------------------C
Confidence 99999885321 1111 12356799999999984 23446999999999887764311 2
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHh
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
++++...+.++.++++. ...++++++++.++++++.+.|++.|+.+..+ .+.++++.++ +.+..++.+.|.+
T Consensus 243 ~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~~~~~~-~~~~~~l~~~l~~ 314 (360)
T 3hdo_A 243 YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIPS-----QGNYLFATPP-DRDGKRVYDGLYA 314 (360)
T ss_dssp CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-----SSSEEEEECT-TCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCC-----CccEEEEECC-CCCHHHHHHHHHH
Confidence 34666666666666664 22277888999999999999999988877654 3346777774 5688899999975
Q ss_pred hCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 329 RYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 329 ~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+||.++++..+..++++||++. ..++.|.+.++|++
T Consensus 315 -~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~ 350 (360)
T 3hdo_A 315 -RKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKE 350 (360)
T ss_dssp -TTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 5999998765445578999964 55666666666654
No 65
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=3.2e-31 Score=241.48 Aligned_cols=306 Identities=11% Similarity=0.068 Sum_probs=224.6
Q ss_pred CCCChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 17 PVHIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
|.+.++.+.+++.+.... ...|..... .++++.+++++ |.. .++++++++|+++++..++.+++.+||+|
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~V 119 (369)
T 3cq5_A 41 PYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTA 119 (369)
T ss_dssp CSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEE
T ss_pred CCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEE
Confidence 345677888887764321 111211112 47777777773 333 23469999999999999999989999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
++..+.|++.. ..++..|.+++.++.+.++.+|++++++++++ .++++|++++|+||||.++|.+++.++|+.
T Consensus 120 l~~~~~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~-- 192 (369)
T 3cq5_A 120 LGFQPSYSMHP--ILAKGTHTEFIAVSRGADFRIDMDVALEEIRA---KQPDIVFVTTPNNPTGDVTSLDDVERIINV-- 192 (369)
T ss_dssp EEEESSCTHHH--HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH---HCCSEEEEESSCTTTCCCCCHHHHHHHHHH--
T ss_pred EEcCCChHHHH--HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--
Confidence 99999888753 45777899999999887778999999999984 156999999999999999999999999999
Q ss_pred CCcEEEEeeeeccCcee---ecc-cccc-ceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 168 HPALFLVDGVSSICAID---FRM-DEWG-IDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~-~~~~-~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
.++++|+|++|+.+... ... ...+ .++++.|+||+++ ++| +|++++++++++++.....
T Consensus 193 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------- 258 (369)
T 3cq5_A 193 APGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFD-FAGGRLGYFVANPAFIDAVMLVRL------------- 258 (369)
T ss_dssp CSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTS-CGGGCCEEEEECTHHHHHHHTTSC-------------
T ss_pred CCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcC-CcccceEEEEeCHHHHHHHHHcCC-------------
Confidence 78999999999876532 121 2234 6799999999995 344 6999999998887764311
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
.++++...+.++.++++.. ..+++.++++.++++++.+.|++.|+.+..+ .+.++++.++ .+..
T Consensus 259 -------~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~--~~~~ 322 (369)
T 3cq5_A 259 -------PYHLSALSQAAAIVALRHS--ADTLGTVEKLSVERVRVAARLEELGYAVVPS-----ESNFVFFGDF--SDQH 322 (369)
T ss_dssp -------TTCSCHHHHHHHHHHHHTH--HHHHTHHHHHHHHHHHHHHHHHHHTCEEECC-----SSSEEEEECC--SSHH
T ss_pred -------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-----CCeEEEEECC--CCHH
Confidence 2346665555555555532 2267788899999999999999888877643 2346778875 4678
Q ss_pred HHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++.+.|. ++||.+.+| . .++++||++. ..++.+...++|.
T Consensus 323 ~l~~~l~-~~gi~v~~~-~--~~~~iRis~~-~~~~i~~~~~~l~ 362 (369)
T 3cq5_A 323 AAWQAFL-DRGVLIRDV-G--IAGHLRTTIG-VPEENDAFLDAAA 362 (369)
T ss_dssp HHHHHHH-HTTEECBCC-S--CTTEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCEEEEEC-C--CCCeEEEEeC-CHHHHHHHHHHHH
Confidence 8999996 559999987 1 2468999976 3344444555544
No 66
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=2e-32 Score=252.60 Aligned_cols=300 Identities=13% Similarity=0.095 Sum_probs=217.1
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ +++++++++|+++|+..++.+++.+||+|+++.+
T Consensus 54 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~ 133 (406)
T 1xi9_A 54 QPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGP 133 (406)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCC
Confidence 5567788877664322 112222223456777777766 332 2356999999999999999998899999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 134 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~-- 205 (406)
T 1xi9_A 134 SYPPYT--GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGE-- 205 (406)
T ss_dssp CCHHHH--HHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CCccHH--HHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhC----cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHH--
Confidence 887743 55677899999998864 45689999999997 46799999999999999986 8889999999
Q ss_pred CCcEEEEeeeeccCce---eecccc--ccc-eEEEecCCCcccCCCc--ceeee--eCH----HHHHHhccCCCCceeec
Q 017726 168 HPALFLVDGVSSICAI---DFRMDE--WGI-DVALTGSQKALSLPTG--MGIVC--ASP----KALEASKTAKSVRVFFD 233 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~---~~~~~~--~~~-d~~~~s~~K~~~g~~g--~g~~~--~~~----~~~~~~~~~~~~~~~~~ 233 (367)
+|+++|+|++|+.+.. ..++.. .+. +++++|+||+++ ++| +|+++ .++ ++++++....
T Consensus 206 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~l~~~l~~~~------- 277 (406)
T 1xi9_A 206 YEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF-ATGWRLGYMYFVDPENKLSEVREAIDRLA------- 277 (406)
T ss_dssp HTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC-CGGGCCEEEEEECTTCTTHHHHHHHHHHH-------
T ss_pred cCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccC-CCccEEEEEEEecCchhHHHHHHHHHHHH-------
Confidence 9999999999986543 111111 356 899999999995 555 79998 888 8877765321
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 312 (367)
... ++++...+.++.++++...+ .++++++++.++++++.+.|+++ |+.+..+ .++.++++.
T Consensus 278 ------~~~------~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~~~~~~ 340 (406)
T 1xi9_A 278 ------RIR------LCPNTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPK 340 (406)
T ss_dssp ------HHT------CCSCSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBSSEECCE
T ss_pred ------Hhh------cCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhCCCCeeecC----CeeEEEEEe
Confidence 000 23454444555555542212 26778889999999999999988 7777655 344455566
Q ss_pred cCC--CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeec
Q 017726 313 VPS--HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHL 351 (367)
Q Consensus 313 ~~~--~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~ 351 (367)
++. +.+..++.+.|.+++||.+.+|..+. .+.++||++.
T Consensus 341 ~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~ 383 (406)
T 1xi9_A 341 IEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL 383 (406)
T ss_dssp ECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC
T ss_pred cCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec
Confidence 654 46788999999755699999875432 2568999976
No 67
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2.4e-31 Score=244.73 Aligned_cols=284 Identities=16% Similarity=0.142 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 119 (367)
..+...++++.+++++|.+. .+++++|++++..++.+++.+||.|++..+.|.+.. ..++..|.+++.++.
T Consensus 86 ~~~~~~~l~~~la~~~~~~~---~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~--~~~~~~g~~~~~~~~---- 156 (399)
T 3tqx_A 86 TQTIHKELEKDISEFLGTDD---TILYSSCFDANGGLFETLLGPEDAIISDELNHASII--DGIRLCKAQRYRYKN---- 156 (399)
T ss_dssp CBHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHH--HHHHSCCSEEEEECT----
T ss_pred CchHHHHHHHHHHHHHCCCc---EEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHH--HHHHHcCCceeEeCC----
Confidence 34678899999999999763 345566789999999889999999999999777643 457778999988886
Q ss_pred CCCHHHHHHHHhccCC--CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee------ecccc--
Q 017726 120 GAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID------FRMDE-- 189 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~------~~~~~-- 189 (367)
.|++++++++++... .++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+... .....
T Consensus 157 -~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T 3tqx_A 157 -NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADK--YNALVMVDDSHAVGFIGENGRGTPEYCGVA 233 (399)
T ss_dssp -TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHH--TTCEEEEECTTTTTTSSTTSCCHHHHHTCT
T ss_pred -CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH--cCCEEEEECCccccccCCCCCchHHhhCCC
Confidence 378899998886321 168999999999999999999999999999 99999999999754322 11111
Q ss_pred ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh
Q 017726 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE 269 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~ 269 (367)
.+.|+++.|+||+++|++| |++++++++++.+..... .+. +..+++...+.++.++++... .
T Consensus 234 ~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~~~~~~~~l~~~~-~ 295 (399)
T 3tqx_A 234 DRVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSR------------PYL----FSNTVAPVIVATSLKVLELLK-T 295 (399)
T ss_dssp TCCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCH------------HHH----SSCCCCHHHHHHHHHHHHHHH-H
T ss_pred CCCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhCc------------cee----ccCCCcHHHHHHHHHHHHHHh-h
Confidence 2579999999999986877 999999999887764210 000 122467766677777777664 4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEE
Q 017726 270 GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVF 346 (367)
Q Consensus 270 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~i 346 (367)
+.+++++++.++++++.+.|+++|+++..+ .+.++++.+++..+..++++.|.++ ||.+.++..+ ...+++
T Consensus 296 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~i 369 (399)
T 3tqx_A 296 EGPQLRKQLQENSRYFRAGMEKLGFQLVPG-----NHPIIPVMLGDAQLATNMADHLLQE-GIYVVGFSYPVVPMGKARI 369 (399)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----SSSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTTSCTTCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCcCCC-----CCCEEEEEeCCHHHHHHHHHHHHHC-CCEEeeeCCCCCCCCCceE
Confidence 478899999999999999999998887754 3346778776544677899999865 9999976432 234679
Q ss_pred EEeecCCCCHHHH
Q 017726 347 RIGHLGHLNEVMF 359 (367)
Q Consensus 347 Ri~~~~~~~~~~~ 359 (367)
|+++....+++++
T Consensus 370 Ri~~~~~~~~~~i 382 (399)
T 3tqx_A 370 RVQMSAVHTQQQL 382 (399)
T ss_dssp EEECCTTCCHHHH
T ss_pred EEEeecCCCHHHH
Confidence 9998655554443
No 68
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=3.5e-31 Score=247.01 Aligned_cols=315 Identities=16% Similarity=0.125 Sum_probs=224.4
Q ss_pred ChHHHHHHHccCCCCC----CCCcHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+..... ..|.......++|+.+++++ |.+++++|++|+|+++++..++.+++++||.|++..
T Consensus 92 p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~ 171 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEA 171 (448)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeC
Confidence 4666777766543211 12222234567788888877 874334699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh----ccCCCCccEE-EEEecCCCcccccc---HHHHHHHH
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA----ADTAHTIKAI-CIVHNETATGVTNN---LSKVRKLL 163 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~----~~~~~~~~lv-~~~~~~n~tG~~~~---~~~i~~~~ 163 (367)
|.|++.. ..++..|.+++.++.+.++ +|+++++++++ +. +++++| ++++++||||.+++ +++|.++|
T Consensus 172 p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~--~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la 246 (448)
T 3aow_A 172 PTYLAAL--QAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQG--KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELA 246 (448)
T ss_dssp SCCHHHH--HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTT--CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHH
T ss_pred CChHHHH--HHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccC--CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHH
Confidence 9887753 5567789999999987654 89999999997 42 367888 56899999999987 56899999
Q ss_pred HhcCCCcEEEEeeeeccCcee----e---ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 164 DEYRHPALFLVDGVSSICAID----F---RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~----~---~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
++ +|++||+|++|+.+... . .+...+.++++.|++|+++....+|++++++++++++.....
T Consensus 247 ~~--~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~~l~~~l~~~~~--------- 315 (448)
T 3aow_A 247 SE--YDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQ--------- 315 (448)
T ss_dssp HH--HTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHH---------
T ss_pred HH--cCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeCHHHHHHHHHHHH---------
Confidence 99 99999999999865431 1 122235689999999999522237999999999887763210
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHc---CCccccCCCccCCCceEEEE
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAW---GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~ 312 (367)
.. .++++.....++..+++... +..++++++++.++++++.+.|++. |+.+..+ ..+.+++++
T Consensus 316 ------~~---~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p----~~g~~~~v~ 382 (448)
T 3aow_A 316 ------ST---DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKP----EGGMFIWVT 382 (448)
T ss_dssp ------HH---HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC----SBSSEEEEE
T ss_pred ------Hh---cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCC----CccEEEEEE
Confidence 00 11245544444454554321 1226778888899999999999985 6777665 345678899
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecCC-CCHHHHHHhhh
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGH-LNEVMFNFQLL 364 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~-~~~~~~~~~~l 364 (367)
++++.+..++++.|.++ ||.+.+|..+. ..+++||++... .++.+...+.|
T Consensus 383 ~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L 438 (448)
T 3aow_A 383 LPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438 (448)
T ss_dssp CSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 87677888999999877 99999885432 356899997552 33334444333
No 69
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=1e-30 Score=236.88 Aligned_cols=285 Identities=15% Similarity=0.093 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCC
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d 122 (367)
..++|+.++++++.+++ ++++++|+++++..++.+++.+| |+|+++.|+|+++. ..++..|.+++.++.+.++.+|
T Consensus 60 ~~~lr~~la~~~~~~~~-~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~d 136 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE-QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS--VSAETIGVECRTVPTLDNWQLD 136 (356)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHH--HHHHHHTCEEEECCCCTTSCCC
T ss_pred HHHHHHHHHHHhCCChH-HEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHH--HHHHHcCCEEEEeeCCCCCCCC
Confidence 57899999999998754 59999999999999999988999 99999999887754 4567789999999988777889
Q ss_pred HHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee---ecc-ccccceEEEec
Q 017726 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---FRM-DEWGIDVALTG 198 (367)
Q Consensus 123 ~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~-~~~~~d~~~~s 198 (367)
+++++++++ ++++|++++|+||||.++|.+++.++++...+|+++|+|++|+.+... .+. ...+.++++.|
T Consensus 137 ~~~l~~~i~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s 211 (356)
T 1fg7_A 137 LQGISDKLD-----GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT 211 (356)
T ss_dssp HHHHHTSCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred HHHHHHHhc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEec
Confidence 999988775 469999999999999999988888888763279999999999854411 122 23357899999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+||+++ ++| +|++++++++++++.... . +++.+.....+..++++......+++.++
T Consensus 212 ~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~-----------------~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 270 (356)
T 1fg7_A 212 LSKAFA-LAGLRCGFTLANEEVINLLMKVI-----------------A---PYPLSTPVADIAAQALSPQGIVAMRERVA 270 (356)
T ss_dssp SSSTTC-CGGGCCEEEEECHHHHHHHHHHS-----------------C---SSCSCHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred chHhhc-CchhhhEEEEeCHHHHHHHHHhc-----------------C---CCCCCHHHHHHHHHHhcCccHHHHHHHHH
Confidence 999984 455 699999999988776431 1 23456544444444444322111677888
Q ss_pred HHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCCCCCcEEEEeecCCC
Q 017726 277 RHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNKVAGKVFRIGHLGHL 354 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~~~~~~~iRi~~~~~~ 354 (367)
++.++++++.+.|++++ +....+ ..+.+++++++ +..++.++|. ++||.+++ |..+..++++||++. ..
T Consensus 271 ~~~~~~~~l~~~L~~~~~~~~~~~----~~~~~~~~~~~---~~~~l~~~L~-~~gI~v~~~g~~~~~~~~iRis~~-~~ 341 (356)
T 1fg7_A 271 QIIAEREYLIAALKEIPCVEQVFD----SETNYILARFK---ASSAVFKSLW-DQGIILRDQNKQPSLSGCLRITVG-TR 341 (356)
T ss_dssp HHHHHHHHHHHHHHHSTTEEEECC----CSSSEEEEEET---THHHHHHHHH-HTTEECEECTTSTTCTTEEEEECC-CH
T ss_pred HHHHHHHHHHHHHHhCCCceEECC----CCCeEEEEECC---CHHHHHHHHH-HCCEEEEECCCCCCCCCeEEEEeC-CH
Confidence 89999999999999985 222222 23456788885 6788999995 56999998 755444568999965 44
Q ss_pred CHHHHHHhhhhc
Q 017726 355 NEVMFNFQLLFQ 366 (367)
Q Consensus 355 ~~~~~~~~~l~~ 366 (367)
++.+...++|++
T Consensus 342 ~e~~~~~~~l~~ 353 (356)
T 1fg7_A 342 EESQRVIDALRA 353 (356)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 555666666654
No 70
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=1.9e-30 Score=238.16 Aligned_cols=303 Identities=13% Similarity=0.031 Sum_probs=219.8
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHH-HHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKT-LLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~-~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|... ..+ +|+.+++++ |.+ +++++++++|+++++..++.+++.+||+|++..
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~ 118 (390)
T 1d2f_A 41 ATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHT 118 (390)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Confidence 5678888888775432 1122111 345 777777766 532 335699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
|.|++.. ..++..|.+++.++.+.+ +.+|++++++++++ .++++|++++|+||||.++| +++|.++|++
T Consensus 119 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 193 (390)
T 1d2f_A 119 PAYDAFY--KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK---PECKIMLLCSPQNPTGKVWTCDELEIMADLCER 193 (390)
T ss_dssp SCCHHHH--HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHH
T ss_pred CCcHHHH--HHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc---CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHH
Confidence 9887753 456778999999998643 25899999999974 36799999999999999987 7889999999
Q ss_pred cCCCcEEEEeeeeccCce----eeccccc--c-ceEEEecCCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAI----DFRMDEW--G-IDVALTGSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~----~~~~~~~--~-~d~~~~s~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+.. ..+.... + .|. +.|+||+++ ++| +|+++++ +++++.+....
T Consensus 194 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~--------- 260 (390)
T 1d2f_A 194 --HGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFN-IPALTGAYGIIENSSSRDAYLSAL--------- 260 (390)
T ss_dssp --TTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHT-CGGGCCEEEEECSHHHHHHHHHHH---------
T ss_pred --cCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhc-ccChhheEEEECCHHHHHHHHHHH---------
Confidence 9999999999986432 1222222 1 267 999999994 444 6999985 77777665321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEc
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
.+.+..++++...+.++.++++...+ .+++.++++.++++++.+.|++ + |+.+..+ .++.++++.+
T Consensus 261 -------~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~ 328 (390)
T 1d2f_A 261 -------KGRDGLSSPSVLALTAHIAAYQQGAP-WLDALRIYLKDNLTYIADKMNAAFPELNWQIP----QSTYLAWLDL 328 (390)
T ss_dssp -------HTTSCCCSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC----SBCSEEEEEC
T ss_pred -------hhhcccCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC----CccEEEEEEc
Confidence 00001225666665666666654222 2778888999999999999998 5 7777665 3555667888
Q ss_pred CCC-CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCC
Q 017726 314 PSH-INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGH 353 (367)
Q Consensus 314 ~~~-~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~ 353 (367)
+.. .+..++.+.|.+++||.+.+|..+ ..++++||++...
T Consensus 329 ~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~ 371 (390)
T 1d2f_A 329 RPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCP 371 (390)
T ss_dssp GGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSC
T ss_pred cccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCC
Confidence 542 578899999986679999987543 2356899997764
No 71
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=5.4e-32 Score=250.62 Aligned_cols=305 Identities=12% Similarity=0.056 Sum_probs=220.2
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc------------CCCCceEEecCChhHHHHHHHHccCCC
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK------------TTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~------------~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
.++++.+.+++.+.... ...|.......++|+.++++++ .++ +++++++|+++++..++.+++.+
T Consensus 49 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~al~~~~~~l~~~ 127 (416)
T 1bw0_A 49 LLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVK-DNVVLCSGGSHGILMAITAICDA 127 (416)
T ss_dssp SCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG-GGEEEESHHHHHHHHHHHHHCCT
T ss_pred CCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCc-ceEEEeCChHHHHHHHHHHhCCC
Confidence 56788888888775322 1123222345688889999888 444 45999999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
||+|++..|+|++.. ..++..|++++.++.+.+ +.+|+++++++++ ++++++++++|+||||.++| +++
T Consensus 128 gd~vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l~~ 201 (416)
T 1bw0_A 128 GDYALVPQPGFPHYE--TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD----DKTKLLIVTNPSNPCGSNFSRKHVED 201 (416)
T ss_dssp TCEEEEEESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred CCEEEEcCCCcHhHH--HHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc----cCCeEEEEeCCCCCCCcccCHHHHHH
Confidence 999999999888753 557788999999987643 5689999999987 46799999999999999998 889
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCce--------eeccc---cccceEEEecCCCcccCCCc--ceeeeeCHH--HHHHhc
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAI--------DFRMD---EWGIDVALTGSQKALSLPTG--MGIVCASPK--ALEASK 223 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~--------~~~~~---~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~--~~~~~~ 223 (367)
|.++|++ +|+++|+|++|+.+.. ..+.. ..+.++++.|++|+++ .+| +|+++++++ +++++.
T Consensus 202 i~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~Glr~G~~~~~~~~~~~~~~~ 278 (416)
T 1bw0_A 202 IVRLAEE--LRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV-VPGWRLGWLLYVDPHGNGPSFL 278 (416)
T ss_dssp HHHHHHH--HTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS-CGGGCCEEEEEECTTCSCHHHH
T ss_pred HHHHHHH--cCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCC-CCCceEEEEEeeCchhhHHHHH
Confidence 9999999 9999999999886321 11221 1123688899999984 344 699998764 333332
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
.. ...+.. ..++++.....++.++++...+..+++.+++++++++++.+.|+++ |+.+..+
T Consensus 279 ~~------------~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--- 340 (416)
T 1bw0_A 279 EG------------LKRVGM---LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMP--- 340 (416)
T ss_dssp HH------------HHHHHH---HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCC---
T ss_pred HH------------HHHHhc---cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC---
Confidence 10 001100 0234666555666666653223447788889999999999999987 8776654
Q ss_pred cCCCceEEEEcCC-----CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 303 WFSDTVTAVIVPS-----HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 303 ~~~~~~~~~~~~~-----~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
..+.+++++++. ..+..++++.|.+++||.+.+|..+..++++||++.
T Consensus 341 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~ 393 (416)
T 1bw0_A 341 -RGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT 393 (416)
T ss_dssp -CBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC
T ss_pred -CeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec
Confidence 234566777742 246788999886566999998865545678999984
No 72
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=8.6e-32 Score=247.72 Aligned_cols=302 Identities=16% Similarity=0.068 Sum_probs=220.2
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.++.+.+++.+.... ...|.......++++.+++++|.++ +++++++|+++++..++.+++.+||+|++..|.|+
T Consensus 48 ~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~-~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~ 126 (397)
T 2zyj_A 48 PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRP-EEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM 126 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCG-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCH
T ss_pred CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCCh-hhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcH
Confidence 467778777664321 1222222345789999999999654 45999999999999999998999999999999887
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEE-EEEecCCCccccccHH---HHHHHHHhcCCCcE
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI-CIVHNETATGVTNNLS---KVRKLLDEYRHPAL 171 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv-~~~~~~n~tG~~~~~~---~i~~~~~~~~~~~~ 171 (367)
+.. ..++..|.+++.++.+.++ +|++++++++++ .++++| ++++++||||.++|.+ +|.++|++ +|++
T Consensus 127 ~~~--~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~---~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~--~~~~ 198 (397)
T 2zyj_A 127 GAI--QAFRLQGPRFLTVPAGEEG-PDLDALEEVLKR---ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVME--RGLV 198 (397)
T ss_dssp HHH--HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH---CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHH--HTCC
T ss_pred HHH--HHHHHcCCEEEecCcCCCC-CCHHHHHHHHhh---cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHH--cCCE
Confidence 753 4567789999999987654 899999999985 256887 5789999999999755 88999999 9999
Q ss_pred EEEeeeeccCce----eeccccc------cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 172 FLVDGVSSICAI----DFRMDEW------GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 172 vi~D~~~~~~~~----~~~~~~~------~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+|++|+.+.. ..++... +.++++.|+||++++..++|++++++++++++..... .+
T Consensus 199 li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~------------~~ 266 (397)
T 2zyj_A 199 VVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQ------------GA 266 (397)
T ss_dssp EEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHH------------HH
T ss_pred EEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHHHHH------------hh
Confidence 999999986532 1222222 2348899999999622447999999998877753210 00
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc---CCccccCCCccCCCceEEEEcCCCCC
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW---GLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
.++.+.....++.++++......++++++++.++++++.+.|++. |+.+..+ ..+.+++++++++.+
T Consensus 267 ------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~----~~g~~~~~~~~~~~~ 336 (397)
T 2zyj_A 267 ------DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRP----KGGMFVWMELPKGLS 336 (397)
T ss_dssp ------HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCC----SBSSEEEEECSTTCC
T ss_pred ------cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccC----CccEEEEEEcCCCCC
Confidence 112344444444444443211236778888899999999999985 6777655 345578888876678
Q ss_pred HHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecCC
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGH 353 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~ 353 (367)
..++.+.|.++ ||.+.+|..+. .++++||++...
T Consensus 337 ~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~ 374 (397)
T 2zyj_A 337 AEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATL 374 (397)
T ss_dssp HHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSS
T ss_pred HHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCC
Confidence 88999999876 99999875432 357899997653
No 73
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=9.9e-31 Score=248.38 Aligned_cols=302 Identities=14% Similarity=0.069 Sum_probs=230.7
Q ss_pred cHHHHHHHHHHHHHHHhcCCC-CceE--EecCChhHHHHHHHHccCCCC--------CeEEEEeCCcchHHHHHHHHHhC
Q 017726 39 AVPALTKTLLEDIKKIFKTTS-GTPF--LIPTTGTGAWESALTNTLSPG--------DRIISFLIGQFSLLWIDQQQRLN 107 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~~-~~~v--~~~~ggt~al~~~~~~~~~~g--------d~vl~~~~~~~~~~~~~~~~~~g 107 (367)
.......++++++++++|.+. ++.+ ++++||++|+..++.++..+| |+|+++.+.|++. ...++..|
T Consensus 136 ~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~--~~~~~~~G 213 (514)
T 3mad_A 136 STAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAF--DKAAQYFG 213 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHH--HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHH--HHHHHHcC
Confidence 345666778899999999872 1235 999999999999998877665 8999999988874 36677889
Q ss_pred CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce----
Q 017726 108 FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI---- 183 (367)
Q Consensus 108 ~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---- 183 (367)
++++.++.+.++.+|+++++++++ +++++|++++++||+|.+.|+++|.++|++ +|+++|+|++|+.+..
T Consensus 214 ~~v~~v~~~~~~~~d~~~Le~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~i~livDea~~~~~~~~~~ 287 (514)
T 3mad_A 214 IKLVRTPLDADYRADVAAMREAIT----PNTVVVAGSAPGYPHGVVDPIPEIAALAAE--HGIGCHVDACLGGFILPWAE 287 (514)
T ss_dssp CEEEEECBCTTSCBCHHHHHHHCC----TTEEEEEEETTCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTTTTHHHHH
T ss_pred CeeEEeeeCCCCCCCHHHHHHHhc----cCCEEEEEeCCCCCCccccCHHHHHHHHHH--hCCeEEEecccccccchhHH
Confidence 999999999888999999999998 467999999999999999999999999999 9999999999875533
Q ss_pred -------eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHH
Q 017726 184 -------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL 256 (367)
Q Consensus 184 -------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (367)
+++....++|++++|+||++.++.|+|+++++++...+........+... ... .....++.+...+
T Consensus 288 ~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~gs~~~~~~ 360 (514)
T 3mad_A 288 RLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGG------LYF-SPTFAGSRPGALS 360 (514)
T ss_dssp HTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTC------SEE-ESSSCSSCCHHHH
T ss_pred hcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCC------ccc-CCccCCCCchHHH
Confidence 34445568899999999998888889999998887655332111000000 000 0011335666667
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 017726 257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 257 ~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 335 (367)
+++.+++..+...+++++.++..++++++.+.|++. |+++..+. . .++++.. ++.+..++.++|.++ ||.+
T Consensus 361 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~-~~~~~~~-~~~~~~~l~~~L~~~-Gi~v- 432 (514)
T 3mad_A 361 ATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP----L-WVIAVAS-DELNIYQVMEEMAGR-GWRL- 432 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC----S-SEEEEEC-SSSCHHHHHHHHHTT-TCBC-
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC----e-EEEEEeC-CCCCHHHHHHHHHhc-CCEe-
Confidence 888999999888888999999999999999999997 88877652 2 3677776 567888999999766 9887
Q ss_pred cCCCCCCCcEEEEeecCC---CCHHHHHHhhhh
Q 017726 336 LGLNKVAGKVFRIGHLGH---LNEVMFNFQLLF 365 (367)
Q Consensus 336 ~g~~~~~~~~iRi~~~~~---~~~~~~~~~~l~ 365 (367)
++... +..+|+++... .++.+...+.|+
T Consensus 433 ~g~~~--~~~~Ri~~~~~~~~~e~i~~~l~~L~ 463 (514)
T 3mad_A 433 NGLHR--PPAFHVALTLRHTEPGVVDRFLADLQ 463 (514)
T ss_dssp EEETT--TTEEEEECCGGGGSTTHHHHHHHHHH
T ss_pred ccCCC--CCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 44332 46799987532 345555555544
No 74
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.98 E-value=2.7e-30 Score=237.81 Aligned_cols=303 Identities=11% Similarity=0.058 Sum_probs=220.0
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|... ..++++.+++++ |.+ .++++++|+|+++|+..++.+++.+||+|++..|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p 121 (399)
T 1c7n_A 44 KNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITP 121 (399)
T ss_dssp CCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSS
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 4577888888775321 1112111 456777777664 632 2346999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCC-CC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESD-WG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~-~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
.|++.. ..++..|.+++.++.+ .+ +.+|++++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 122 ~~~~~~--~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~- 195 (399)
T 1c7n_A 122 VYYPFF--MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD---KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLK- 195 (399)
T ss_dssp CCTHHH--HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH-
T ss_pred CcHhHH--HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc---CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHH-
Confidence 888753 4567789999998875 32 35899999999974 36799999999999999998 8899999999
Q ss_pred CCCcEEEEeeeeccCce----eecccc-----ccceEEEecCCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeech
Q 017726 167 RHPALFLVDGVSSICAI----DFRMDE-----WGIDVALTGSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~----~~~~~~-----~~~d~~~~s~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~ 234 (367)
+|+++|+|++|+.+.. ..++.. .+.++++.|++|+++ ++| +|+++++ +++++++....
T Consensus 196 -~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~-------- 265 (399)
T 1c7n_A 196 -SDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN-IAGMGMSNIIIKNPDIRERFTKSR-------- 265 (399)
T ss_dssp -SSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT-CGGGCCEEEECCCHHHHHHHHHHH--------
T ss_pred -cCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhcc-ccchheEEEEECCHHHHHHHHHHH--------
Confidence 9999999999986432 122221 246789999999995 444 6999986 56777765321
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~ 312 (367)
...+ ..+++...+.++.+++... +..++++++++.++++++.+.|++ + |+.+..+ .++.++++.
T Consensus 266 -------~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~ 331 (399)
T 1c7n_A 266 -------DATS--GMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI----EGTYLQWID 331 (399)
T ss_dssp -------HHTT--CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC----SBSSEEEEE
T ss_pred -------hhcc--cCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecC----CceEEEEEE
Confidence 0011 1235665555555566542 223778888999999999999998 6 8877665 355566788
Q ss_pred cCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCC
Q 017726 313 VPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGH 353 (367)
Q Consensus 313 ~~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~ 353 (367)
++. +.+..++.+.|.+++||.+.+|..+ ..++++||++...
T Consensus 332 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~ 375 (399)
T 1c7n_A 332 FRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAP 375 (399)
T ss_dssp CGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSC
T ss_pred cccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccC
Confidence 854 3678899999976679999987543 2457899998665
No 75
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.98 E-value=1e-30 Score=242.28 Aligned_cols=317 Identities=11% Similarity=0.017 Sum_probs=233.0
Q ss_pred CChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 19 HIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
+.++.+.+++.+.... .......+..+++++++++.++.+ .+++|++++|+++|+..++.+++.+||+|++..+.|
T Consensus 74 ~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y 153 (421)
T 3l8a_A 74 LPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVY 153 (421)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 4678888888775421 112223567778888888888843 335699999999999999999999999999999988
Q ss_pred chHHHHHHHHHhCCceEEEeCC-CC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cHHHHHHHHHhcCC
Q 017726 95 FSLLWIDQQQRLNFNVDVVESD-WG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEYRH 168 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~-~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~~~~ 168 (367)
++.. ..++..|.+++.++.+ .+ +.+|++++++++++ +++++|++++|+||+|.++ ++++|.++|++ +
T Consensus 154 ~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~---~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~--~ 226 (421)
T 3l8a_A 154 YPFA--RTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID---NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKK--H 226 (421)
T ss_dssp HHHH--HHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH--H
T ss_pred HHHH--HHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc---cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHH--c
Confidence 8743 4567789999999875 23 36899999999984 3679999999999999885 58889999999 9
Q ss_pred CcEEEEeeeeccCcee----ecc-----ccccceEEEecCCCccc-CCCcceeeeeC-HHHHHHhccCCCCceeechHHH
Q 017726 169 PALFLVDGVSSICAID----FRM-----DEWGIDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~----~~~-----~~~~~d~~~~s~~K~~~-g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
|+++|+|++|+.+... .++ +..+.++++.|++|+++ ++.++|+++++ +++.+.+....
T Consensus 227 ~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~----------- 295 (421)
T 3l8a_A 227 GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQ----------- 295 (421)
T ss_dssp TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH-----------
T ss_pred CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHH-----------
Confidence 9999999998754321 111 11356799999999995 22346999988 88877665321
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS- 315 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~- 315 (367)
...+ .++++...+.++.+++....++ +++++++..++++++.+.|++. ++.+..+ .++.+.++.++.
T Consensus 296 ----~~~~--~~~~n~~~~~a~~aal~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~----~~~~~~~v~~~~~ 364 (421)
T 3l8a_A 296 ----LANN--QHEVPTVGMIATQAAFQYGKPW-LEELKTVIEGNIKLVIKELEAKTKIKVMEP----EGTYLVWLDFSAY 364 (421)
T ss_dssp ----HHTT--CSCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHCSCEEECC----SBSSEEEEECGGG
T ss_pred ----Hhcc--cCCCCHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhCCCceEeCC----CeeEEEEEecccc
Confidence 0111 3357777777777777653333 7888899999999999999996 8888776 455566688754
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+.+..++.+.|.+++||.+.+|..+ ...+++||++....++.+...+.|
T Consensus 365 ~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l 415 (421)
T 3l8a_A 365 AIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRI 415 (421)
T ss_dssp TCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 4678899999987779999987543 345789999774333333333333
No 76
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-31 Score=251.90 Aligned_cols=303 Identities=11% Similarity=0.048 Sum_probs=230.9
Q ss_pred cHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCC-----CC---CeEEEEeCCcchHHHHHHHHHhCCc
Q 017726 39 AVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLS-----PG---DRIISFLIGQFSLLWIDQQQRLNFN 109 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~~~~g~~ 109 (367)
.......++++++++++|.+ ..+++++++||++|+..++.++.. +| +.|+++.+.|++. ...++..|++
T Consensus 104 ~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~--~~~~~~~G~~ 181 (497)
T 3mc6_A 104 AVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGF--DKAAYYFGMK 181 (497)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHH--HHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHH--HHHHHHcCCe
Confidence 34567778999999999998 445699999999999999987643 45 8999999987774 3667888999
Q ss_pred eEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----
Q 017726 110 VDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI----- 183 (367)
Q Consensus 110 ~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~----- 183 (367)
++.++.+. ++.+|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++|+.+..
T Consensus 182 ~~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~p~nptG~~~~l~~i~~la~~--~g~~livD~a~~~~~~~f~~~ 255 (497)
T 3mc6_A 182 LRHVELDPTTYQVDLGKVKKFIN----KNTVLLVGSAPNFPHGIADDIEGLGKIAQK--YKLPLHVDSCLGSFIVSFMEK 255 (497)
T ss_dssp EEEECBCTTTCSBCTTTTGGGCC----SSEEEEEEETTCTTTCCCCSCTTTTTHHHH--TTCCEEEETTTTHHHHGGGTT
T ss_pred EEEEecCcccCcCCHHHHHHHHh----hCCEEEEEECCCCCCCcCCCHHHHHHHHHH--hCCEEEEECcchhhhhhhhhh
Confidence 99999987 77899999999997 467999999999999999999999999999 9999999999874322
Q ss_pred -------eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHH
Q 017726 184 -------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL 256 (367)
Q Consensus 184 -------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (367)
+++....++|+++.++||++.++.|+|+++++++.+.+........+... .+ ......++.+...+
T Consensus 256 ~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~g~~~~~~~ 328 (497)
T 3mc6_A 256 AGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG------LY-GSPTLAGSRPGAIV 328 (497)
T ss_dssp TTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTS------CB-CCSSSCSSCBHHHH
T ss_pred hcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCC------Cc-CCcCcccCCcchhH
Confidence 34555568999999999998889999999998887665532211110000 00 00011234555667
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 017726 257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL 334 (367)
Q Consensus 257 ~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v 334 (367)
+++++++..+...|+++..++..++++++.+.|++ + |++++.+ ....+++|.. .+.+..++.+.|.++ ||.+
T Consensus 329 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~----~~~~~v~~~~-~~~~~~~l~~~L~~~-Gi~v 402 (497)
T 3mc6_A 329 VGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN----PRYSVISFSS-KTLNIHELSDRLSKK-GWHF 402 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC----CCSSEEEEEC-TTTTHHHHHHHHHTT-TCBC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC----CCeeEEEEeC-CCCCHHHHHHHHHhC-CEEE
Confidence 88999999998888999999999999999999999 4 8888764 2344677776 467889999999765 9988
Q ss_pred ccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 335 GLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 335 ~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
..+..+ ..+|+++.. ..++.+.+.+.|.
T Consensus 403 ~~~~~~---~~~ri~~~~~t~e~i~~~~~~L~ 431 (497)
T 3mc6_A 403 NALQKP---VALHMAFTRLSAHVVDEICDILR 431 (497)
T ss_dssp EECCSS---CCEEEECCTTTTCTHHHHHHHHH
T ss_pred ecCCCC---CeEEEEEeCCCHHHHHHHHHHHH
Confidence 755332 357887652 4445555555554
No 77
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.98 E-value=2.2e-31 Score=243.21 Aligned_cols=316 Identities=12% Similarity=0.004 Sum_probs=221.4
Q ss_pred CcccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHHccC
Q 017726 9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~-~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
+.+.+.. .+.+.|+.+.+++.+.......|.......++|+.++++ +|.+ .++++++|+|+++++..++.+++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~ 103 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL 103 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc
Confidence 3444443 234567899999988653222222112233455555555 4873 34569999999999999999999
Q ss_pred CC--CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---H
Q 017726 82 SP--GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---L 156 (367)
Q Consensus 82 ~~--gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~ 156 (367)
.+ ||+|++..|.|++.. ..++..|.+++.++.+.++.+++ ++++++.+ ++++|++++|+||||.++| +
T Consensus 104 ~~~~gd~vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~----~~~~v~~~~p~nptG~~~~~~~l 176 (376)
T 3ezs_A 104 FDYQNPTIAYPNPFYQIYE--GAAKFIKAKSLLMPLTKENDFTP-SLNEKELQ----EVDLVILNSPNNPTGRTLSLEEL 176 (376)
T ss_dssp TTCSSCEEEEEESCCTHHH--HHHHHTTCEEEEEECCGGGTSCC-CCCHHHHH----HCSEEEECSSCTTTCCCCCHHHH
T ss_pred CCCCCCEEEEecCCcHhHH--HHHHHcCCEEEEcccCCCCCcch-hHHhhhcc----CCCEEEEcCCCCCcCCCCCHHHH
Confidence 99 999999999888753 55778899999999887655665 67777763 5699999999999999987 5
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCcee---eccc---------cccceEEEecCCCccc-CCCcceeeeeCHHHHHHhc
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAID---FRMD---------EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASK 223 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~~---------~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~ 223 (367)
++|.++|++ +|+++|+|++|+.+... .+.. ..+.++++.|+||+++ ++.++|+++.++++++.+.
T Consensus 177 ~~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~ 254 (376)
T 3ezs_A 177 ISWVKLALK--HDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYK 254 (376)
T ss_dssp HHHHHHHHH--HTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHH--cCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHH
Confidence 567777888 99999999999864331 1111 3467899999999993 2334799999999988776
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 303 (367)
.... . ..++++...+.++.++++. ...+++.++++.++++++.+.|+ ++. .+
T Consensus 255 ~~~~----------------~--~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~---- 306 (376)
T 3ezs_A 255 AFRA----------------Y--LGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--IY---- 306 (376)
T ss_dssp HHHT----------------T--TCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--CC----
T ss_pred HHHh----------------h--hcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC----
Confidence 4211 1 1335666555555555553 12267788888899999988887 544 32
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~----~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
..+.++++.++ +..++.+.|.+++||.+.+|..+ ..++++||++....++.+...+.|
T Consensus 307 ~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l 368 (376)
T 3ezs_A 307 PYSFYVYLPVQ---NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEII 368 (376)
T ss_dssp SBSSEEEEECS---CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHH
T ss_pred CcceEEEEECC---CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 34557788885 67899999987569999987543 245789999765333344444443
No 78
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.98 E-value=5.6e-31 Score=242.14 Aligned_cols=314 Identities=13% Similarity=0.045 Sum_probs=221.3
Q ss_pred CCCChHHHHHHHccCCCCCCCCc----HHHHHHHHHHHHHHHhcCC---CCceEEecCChhHHHHHHHHccCCCC-----
Q 017726 17 PVHIPDQVIRAMNRNNEDYRSPA----VPALTKTLLEDIKKIFKTT---SGTPFLIPTTGTGAWESALTNTLSPG----- 84 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~---~~~~v~~~~ggt~al~~~~~~~~~~g----- 84 (367)
+.+.++.+.+++.+.......|. ..+..+++.+.+.+.+|.+ +++++++|+|+++++..++.+++.+|
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~ 120 (396)
T 3jtx_A 41 KHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIK 120 (396)
T ss_dssp CSCCCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCC
T ss_pred CCCCCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCC
Confidence 34567889999988653322222 2344444444444445753 43269999999999999999999896
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH---HH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK---VR 160 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~---i~ 160 (367)
|+|++..|.|++.. ..++..|.+++.++.+.+ +.+|++++++++++ ++++|++++|+||||.++|.++ |.
T Consensus 121 d~vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~ 194 (396)
T 3jtx_A 121 PAIVSPNPFYQIYE--GATLLGGGEIHFANCPAPSFNPDWRSISEEVWK----RTKLVFVCSPNNPSGSVLDLDGWKEVF 194 (396)
T ss_dssp CEEEEEESCCHHHH--HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH----TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CEEEEcCCCcHhHH--HHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc----CcEEEEEECCCCCCCCcCCHHHHHHHH
Confidence 79999999877643 457789999999998543 46799999999984 6799999999999999997655 88
Q ss_pred HHHHhcCCCcEEEEeeeeccCcee----eccc--------cccceEEEecCCCcccC-CCcceeeeeCHHHHHHhccCCC
Q 017726 161 KLLDEYRHPALFLVDGVSSICAID----FRMD--------EWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~----~~~~--------~~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
++|++ +|+++|+|++|+.+... .... ..+.++++.|++|.++. ..++|+++.++++++.+....
T Consensus 195 ~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~- 271 (396)
T 3jtx_A 195 DLQDK--YGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYR- 271 (396)
T ss_dssp HHHHH--HCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHH-
T ss_pred HHHHH--cCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHH-
Confidence 88999 99999999999864321 1110 24678999999997632 234799999999988776321
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
.. ..++++...+.++.+++.. +..+++.++++.++++.+.+.|++. +.+..+ .++.
T Consensus 272 ------------~~-----~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~----~~~~ 327 (396)
T 3jtx_A 272 ------------TY-----HGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV-FDVKLP----DASF 327 (396)
T ss_dssp ------------HH-----HTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCC----SSSS
T ss_pred ------------hh-----cccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc-CCccCC----CeeE
Confidence 00 1234666555555555543 2237788888999999999998876 344444 3566
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCCCHHHHHHhhh
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
++++.++. .+..++++.|.+++||.+.+|..+. ..+++||++....++.+...+.|
T Consensus 328 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l 391 (396)
T 3jtx_A 328 YIWLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDI 391 (396)
T ss_dssp EEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHH
T ss_pred EEEEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 78888854 5788999999777799999885432 34789999766333333333333
No 79
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.98 E-value=7.5e-31 Score=238.30 Aligned_cols=311 Identities=11% Similarity=0.086 Sum_probs=229.3
Q ss_pred CcccccCC--CCCChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
+.+.+..| |.++++.+.+++.+..... .++. ....++++.++++++.+++ ++++++|+++++..++.++ |
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~--~~~~~l~~~la~~~~~~~~-~i~~~~g~t~al~~~~~~~----d 99 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPD--VNYRRLNKSIENYLKLKDI-GIVLGNGASEIIELSISLF----E 99 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCC--TTCHHHHHHHHHHHTCCSC-EEEEESSHHHHHHHHHTTC----S
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHHHHHHHc----C
Confidence 34455443 4456788888887643321 1222 3457999999999998764 5999999999999999887 8
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKL 162 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~ 162 (367)
+|++..+.|++.. ..++..|.+++.++.+.++.+++++++++++ + +++|++++|+||||.++| +++|.++
T Consensus 100 ~vi~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~----~-~~~v~i~~p~nptG~~~~~~~l~~i~~~ 172 (361)
T 3ftb_A 100 KILIIVPSYAEYE--INAKKHGVSVVFSYLDENMCIDYEDIISKID----D-VDSVIIGNPNNPNGGLINKEKFIHVLKL 172 (361)
T ss_dssp EEEEEESCCTHHH--HHHHHTTCEEEEEECCTTSCCCHHHHHHHTT----T-CSEEEEETTBTTTTBCCCHHHHHHHHHH
T ss_pred cEEEecCChHHHH--HHHHHcCCeEEEeecCcccCCCHHHHHHhcc----C-CCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999887743 5577789999999998887889999999997 3 699999999999999987 5567777
Q ss_pred HHhcCCCcEEEEeeeeccCcee--e---c-cccccceEEEecCCCccc-CCCcceeee-eCHHHHHHhccCCCCceeech
Q 017726 163 LDEYRHPALFLVDGVSSICAID--F---R-MDEWGIDVALTGSQKALS-LPTGMGIVC-ASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~--~---~-~~~~~~d~~~~s~~K~~~-g~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (367)
|++ +|+++|+|++|+.+... . . ....+.++++.|++|.++ ++.++|+++ .++++++++.....
T Consensus 173 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~------- 243 (361)
T 3ftb_A 173 AEE--KKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN------- 243 (361)
T ss_dssp HHH--HTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC-------
T ss_pred hhh--cCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC-------
Confidence 778 99999999998754432 1 1 112245688899999985 223368888 88888887764311
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCc-cccCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK-NCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~ 312 (367)
.++++...+.++.++++. ...+++++++..++++++.+.|+++ ++. +..+ .+.+++++
T Consensus 244 -------------~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~ 303 (361)
T 3ftb_A 244 -------------PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP-----HANFVLCR 303 (361)
T ss_dssp -------------TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC-----SSSEEEEE
T ss_pred -------------CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC-----CCeEEEEE
Confidence 335676666666666653 2337788899999999999999998 777 6554 23467788
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++. .+..++.+.|.++ ||.+.+|..+ ..++++||++. ..++.+.+.+.|+
T Consensus 304 ~~~-~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~ 355 (361)
T 3ftb_A 304 LEN-ISGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALK 355 (361)
T ss_dssp ESS-SCHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHH
Confidence 854 6788999999866 9999988543 34678999964 4344455555554
No 80
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.98 E-value=3.2e-31 Score=249.27 Aligned_cols=327 Identities=13% Similarity=0.077 Sum_probs=230.4
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCC--------CC----cHHHHHHHHHHHHHHHhcCCCCc---eEEecCChhHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR--------SP----AVPALTKTLLEDIKKIFKTTSGT---PFLIPTTGTGAW 73 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~--------~~----~~~~~~~~~~~~la~~~~~~~~~---~v~~~~ggt~al 73 (367)
+.+.+.++..++++.+++++.+...+.. .| ......+.+++++++++|++.++ +|++ ++|++++
T Consensus 45 ~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~-~sGs~an 123 (483)
T 1rv3_A 45 VGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP-YSGSPAN 123 (483)
T ss_dssp SSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHHHH
T ss_pred cCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEE-CCcHHHH
Confidence 3567888999999999999998654322 11 12455667889999999998532 2555 4555888
Q ss_pred HHHHHccCCCCCeEEEEeCCcchHHHH------HHHHHhC--CceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEE
Q 017726 74 ESALTNTLSPGDRIISFLIGQFSLLWI------DQQQRLN--FNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 74 ~~~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g--~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
..++.++++|||+|+++++.|.++... ..++..| ++++.++.+ .++.+|++++++++++ ++||+|++
T Consensus 124 ~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~---~~tklIi~- 199 (483)
T 1rv3_A 124 FAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL---FHPKLIIA- 199 (483)
T ss_dssp HHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEE-
T ss_pred HHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh---cCCcEEEE-
Confidence 888888899999999999877765310 0112233 344444445 4678999999999984 36799998
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccc---cceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW---GIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
+++|++ .+.|+++|.++|++ +|+++++|++|..+....+.... ++|++++|+||+|.|++| |++++++++..
T Consensus 200 ~~sn~~-~~~dl~~i~~ia~~--~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~- 274 (483)
T 1rv3_A 200 GTSCYS-RNLDYGRLRKIADE--NGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS- 274 (483)
T ss_dssp CCSSCC-SCCCHHHHHHHHHH--TTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-
T ss_pred eCCcCC-CcCCHHHHHHHHHH--cCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-
Confidence 888888 88999999999999 99999999999865543333222 689999999999998988 99999876421
Q ss_pred hccCCCC-ceeechHHHHHH-hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 222 SKTAKSV-RVFFDWKDYIKF-YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 222 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
+. ...+ ....++...... ...+. .++++...++++.++++.+.+.+++++.++..++++++.+.|+++|+++..+
T Consensus 275 ~~-~~~g~~~~y~~~~~~~~~~~~~~--~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 351 (483)
T 1rv3_A 275 VD-PKTGKEILYNLESLINSAVFPGL--QGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTG 351 (483)
T ss_dssp --------CCBCCHHHHHHHHHTTTT--CCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred hc-cccCcchhhHHHHHhhhhcCCcc--cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccC
Confidence 11 0000 000011111111 11111 3457888888899999887766688899999999999999999999888775
Q ss_pred CCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCeEEc----cCCC-CCCCcEEEEeecC
Q 017726 300 KEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLG----LGLN-KVAGKVFRIGHLG 352 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~----~g~~-~~~~~~iRi~~~~ 352 (367)
.. .+.++++.++ .+.+..++.+.|. +.||.+. +|.. +...+.+|||+..
T Consensus 352 ~~---~~~~~~v~~~~~g~~~~~~~~~L~-~~gI~v~~~~~pg~~~~~~~~~iRis~~~ 406 (483)
T 1rv3_A 352 GS---DNHLILVDLRSKGTDGGRAEKVLE-ACSIACNKNTCPGDKSALRPSGLRLGTPA 406 (483)
T ss_dssp SC---SSSEEEEEGGGGTCCHHHHHHHHH-HTTEECEEECCSSCSCTTSCCEEEEECHH
T ss_pred CC---CCceEEEeccCCCCCHHHHHHHHH-hCCcEEecCCCCCCCcCCCCceEEeecCC
Confidence 21 2345666663 2567888888775 5699998 7653 2345689999865
No 81
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.98 E-value=1.7e-30 Score=242.88 Aligned_cols=322 Identities=9% Similarity=-0.020 Sum_probs=230.8
Q ss_pred CChHHHHHHHccCCCC---C--CCCcHHHHHHHHHHHHHHHhcCCCCc----eEEecCChhHHHHHHHHccCC-------
Q 017726 19 HIPDQVIRAMNRNNED---Y--RSPAVPALTKTLLEDIKKIFKTTSGT----PFLIPTTGTGAWESALTNTLS------- 82 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~la~~~~~~~~~----~v~~~~ggt~al~~~~~~~~~------- 82 (367)
+.++.+.+++.+.... + .++...+...++++++++++|.+... .+++++|||+|+..++.++..
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~ 132 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 132 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888765432 1 13344566788999999999998643 589999999999998876543
Q ss_pred -CC-----CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 83 -PG-----DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 83 -~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
+| +.|+++. .|++ +...++..|++++.++.++ ++.+|+++++++|+ ++|++|++++|+||||.+.|
T Consensus 133 ~~G~~~~~~~vi~~~-~h~~--~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~----~~t~~v~~~~~~n~tG~~~~ 205 (452)
T 2dgk_A 133 AAGKPTDKPNLVCGP-VQIC--WHKFARYWDVELREIPMRPGQLFMDPKRMIEACD----ENTIGVVPTFGVTYTGNYEF 205 (452)
T ss_dssp HTTCCCSCCEEEESS-CCHH--HHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC----TTEEEEECBBSCTTTCBBCC
T ss_pred hcCCCCCCcEEEECC-CcHH--HHHHHHHcCceEEEEecCCCCCeECHHHHHHHHh----hCCEEEEEEcCCcCCcccCC
Confidence 44 5888877 5554 4466788999999999886 68899999999998 46799999999999999999
Q ss_pred HHHHHHHHHhc----CCCcEEEEeeeeccCcee-------eccccccceEEEecCCCcccCCCcceeeeeCHH-HH-HHh
Q 017726 156 LSKVRKLLDEY----RHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPK-AL-EAS 222 (367)
Q Consensus 156 ~~~i~~~~~~~----~~~~~vi~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~-~~~ 222 (367)
+++|.++|+++ .+|+++++|++|+.+..+ .+....++|++++++||++.++.|+|+++++++ .+ +.+
T Consensus 206 l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~ 285 (452)
T 2dgk_A 206 PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQEL 285 (452)
T ss_dssp HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGG
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHh
Confidence 99999999982 139999999999876432 233334789999999999988899999999754 32 332
Q ss_pred ccCCCCceeechHHHHHHh-hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC
Q 017726 223 KTAKSVRVFFDWKDYIKFY-NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK 300 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 300 (367)
... ..+... .. ..+ ..++.+....+++++++..+...|++++.++..++++++.+.|+++ ++++..+.
T Consensus 286 ~~~---~~~~~~-----~~~~~~--~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 355 (452)
T 2dgk_A 286 VFN---VDYLGG-----QIGTFA--INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG 355 (452)
T ss_dssp CEE---ECCTTC-----CEEECC--SCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred ccC---ccccCC-----CCCCcc--cCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 110 001000 00 000 1223444455778888888888889999999999999999999998 68877542
Q ss_pred CccCCCceEEEEcCCC----CCHHHHHHHHHhhCCeEEccCCCC--C-CCcEEEEeecCCCCHHH
Q 017726 301 EEWFSDTVTAVIVPSH----INSSEIVRRAWQRYNLSLGLGLNK--V-AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 301 ~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gv~v~~g~~~--~-~~~~iRi~~~~~~~~~~ 358 (367)
.......+++|+++.. .+..++.+.|.++ ||.++....+ . ...++|+++....+.+|
T Consensus 356 ~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~ 419 (452)
T 2dgk_A 356 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDF 419 (452)
T ss_dssp CTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHH
T ss_pred CCCCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHH
Confidence 1101234777887532 3558899999765 9866532211 1 24579999887766543
No 82
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.98 E-value=1.6e-30 Score=240.01 Aligned_cols=316 Identities=16% Similarity=0.131 Sum_probs=227.2
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++.+.+++.+.... .. |.......++++.+++++ |.+ .++++++|+|+++|+..++.+++.+||+|++.
T Consensus 50 ~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~ 128 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITE 128 (407)
T ss_dssp CHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEe
Confidence 456777777654221 11 222234567888888887 743 33569999999999999999988999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh----ccCCCCccEE-EEEecCCCccccccHH---HHHHH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA----ADTAHTIKAI-CIVHNETATGVTNNLS---KVRKL 162 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~----~~~~~~~~lv-~~~~~~n~tG~~~~~~---~i~~~ 162 (367)
.|.|++.. ..++..|.+++.++.+.++ +|+++++++++ +. +++++| ++++++||||.++|.+ +|.++
T Consensus 129 ~p~~~~~~--~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~--~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~ 203 (407)
T 2zc0_A 129 NPSYINTL--LAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKG--QKVKLIYTIPTGQNPMGVTMSMERRKALLEI 203 (407)
T ss_dssp ESCCHHHH--HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTT--CCEEEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred CCChHHHH--HHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhccc--CCceEEEECCCCCCCCCcCCCHHHHHHHHHH
Confidence 99887743 5567789999999987654 89999999997 42 267887 5789999999999876 89999
Q ss_pred HHhcCCCcEEEEeeeeccCcee----eccc---cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 163 LDEYRHPALFLVDGVSSICAID----FRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~----~~~~---~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
|++ +|+++|+|++|+.+... .++. ..+.++++.|++|++++..++|++++++++++++......
T Consensus 204 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~------- 274 (407)
T 2zc0_A 204 ASK--YDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQP------- 274 (407)
T ss_dssp HHH--HTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTT-------
T ss_pred HHH--cCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHHHHHHHHHh-------
Confidence 999 99999999999865431 1121 1245688999999996222479999999988877642110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHH-HH-hChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEE
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-FE-EGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~-~~-~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~ 311 (367)
. .+..+...+.++.++++.. .+ ..+++++++++++++++.+.|++. ++.+..+ ..+.++++
T Consensus 275 --------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~ 339 (407)
T 2zc0_A 275 --------I---DFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKP----IAGMFVMF 339 (407)
T ss_dssp --------T---TSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCC----SBSSEEEE
T ss_pred --------h---cCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecC----CCcEEEEE
Confidence 1 1223444445555555542 12 347778888999999999999884 6766554 34557888
Q ss_pred EcCCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecCC-CCHHHHHHhhhh
Q 017726 312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGH-LNEVMFNFQLLF 365 (367)
Q Consensus 312 ~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~-~~~~~~~~~~l~ 365 (367)
+++++.+..++.+.|.+++||.+.+|..+. ...++||++... .++.+...+.|.
T Consensus 340 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~ 398 (407)
T 2zc0_A 340 FLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLA 398 (407)
T ss_dssp ECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 887677888999999877799999885432 346899997654 455555555544
No 83
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.98 E-value=8.7e-32 Score=249.65 Aligned_cols=316 Identities=13% Similarity=0.053 Sum_probs=223.3
Q ss_pred CChHHHHHHHccCCCCC---CCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 19 HIPDQVIRAMNRNNEDY---RSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
++++.+.+++.+..... ..|.......++++.+++++ |.+ +.+++++++|+++++..++.+++.+||+|++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~ 120 (422)
T 3fvs_A 41 PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVII 120 (422)
T ss_dssp CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEE
Confidence 46788888887643221 12221122335555555555 433 3246999999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCC------------CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDW------------GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN--- 154 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~--- 154 (367)
..|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++
T Consensus 121 ~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~----~~~~~v~~~~p~nptG~~~~~~ 194 (422)
T 3fvs_A 121 IEPFFDCYE--PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT----SRTKALVLNTPNNPLGKVFSRE 194 (422)
T ss_dssp EESCCTTHH--HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHH
T ss_pred cCCCchhhH--HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcC----CCceEEEECCCCCCCCcCCCHH
Confidence 999888753 55778899999999875 34689999999987 4679999999999999999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCce----eeccc----cccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccC
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAI----DFRMD----EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~----~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~ 225 (367)
++++|.++|++ +|+++|+|++|+.+.. ..++. ..+.++++.|++|.++ ...++|++++++++++.+...
T Consensus 195 ~l~~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~ 272 (422)
T 3fvs_A 195 ELELVASLCQQ--HDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTV 272 (422)
T ss_dssp HHHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHH
Confidence 58889999999 9999999999976332 11111 1256799999999994 223479999999988777532
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH------HhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF------EEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~------~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
. ... .++.+.....++.+++.... +..++++++++.++++++.+.|+++|+.+..+
T Consensus 273 ~----------------~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 334 (422)
T 3fvs_A 273 H----------------QNS--VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIP 334 (422)
T ss_dssp H----------------HTT--TCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBC
T ss_pred H----------------hhc--cCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCC
Confidence 1 111 33466655556665665411 12277888999999999999999998887766
Q ss_pred CCccCCCceEEEEcCC---CCC----------HHHHHHHHHhhCCeEEccCCCC-------CCCcEEEEeecCCCCHHHH
Q 017726 300 KEEWFSDTVTAVIVPS---HIN----------SSEIVRRAWQRYNLSLGLGLNK-------VAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~---~~~----------~~~l~~~L~~~~gv~v~~g~~~-------~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.++++.++. +.+ ..++++.|.+++||.+.+|..+ ...+++||++....++.+.
T Consensus 335 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~ 410 (422)
T 3fvs_A 335 ----QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQA 410 (422)
T ss_dssp ----SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHH
T ss_pred ----CeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHH
Confidence 355567777632 111 4588888777779999988653 2357899997664334344
Q ss_pred HHhhh
Q 017726 360 NFQLL 364 (367)
Q Consensus 360 ~~~~l 364 (367)
..+.|
T Consensus 411 ~l~~l 415 (422)
T 3fvs_A 411 MDEKL 415 (422)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 84
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.98 E-value=4e-31 Score=244.19 Aligned_cols=297 Identities=16% Similarity=0.133 Sum_probs=217.4
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~----~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++ +.... ...|.......++++.++++++. + .++++++++||++|+..++.+++.+||+|+++.+
T Consensus 56 ~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~ 134 (409)
T 2gb3_A 56 KTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 134 (409)
T ss_dssp CCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 3567788888 64432 11232223345778888887752 2 3356999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|++.. ..++..|.+++.++.+. ++.+ +++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 135 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~-- 205 (409)
T 2gb3_A 135 FYANYN--AFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN----ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAER-- 205 (409)
T ss_dssp CCTHHH--HHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CchhHH--HHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC----cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHH--
Confidence 888753 45677899999999875 3334 788888886 46799999999999999975 7889999999
Q ss_pred CCcEEEEeeeeccCcee---ec-ccc-ccceEEEecCCCcccCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHH
Q 017726 168 HPALFLVDGVSSICAID---FR-MDE-WGIDVALTGSQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~-~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
+|+++|+|++|+.+... .+ +.. .+.|+++.|+||+++ ++| +|++++++ ++++.+....
T Consensus 206 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~l~~~l~~~~------------- 271 (409)
T 2gb3_A 206 HGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFS-ACGARVGCLITRNEELISHAMKLA------------- 271 (409)
T ss_dssp TTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTT-CGGGCCEEEECSCHHHHHHHHHHH-------------
T ss_pred cCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccC-CccceEEEEEECcHHHHHHHHHHH-------------
Confidence 99999999999865431 12 222 257999999999994 555 79999998 8877765321
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCcc-ccCCCccCCCceEEEEcCCCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN-CTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
... . +++.....++.++++.. +..++++++++.++++++.+.|+++|+.+ ..+ ..+.+++++++ +.+
T Consensus 272 --~~~---~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~-~~~ 339 (409)
T 2gb3_A 272 --QGR---L-APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEHGLKRFTKP----SGAFYITAELP-VED 339 (409)
T ss_dssp --HHS---C-CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC----SBSSEEEEECS-SSC
T ss_pred --hcc---C-CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCC----CeeEEEEEEeC-CCC
Confidence 001 1 35555555555555432 23377788899999999999999988777 554 34556777875 567
Q ss_pred HHHHHHHHHhh-----CCeEEccCCCC-----CCCcEEEEeec
Q 017726 319 SSEIVRRAWQR-----YNLSLGLGLNK-----VAGKVFRIGHL 351 (367)
Q Consensus 319 ~~~l~~~L~~~-----~gv~v~~g~~~-----~~~~~iRi~~~ 351 (367)
..++.++|.++ +||.+.+|..+ ..++++||++.
T Consensus 340 ~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~ 382 (409)
T 2gb3_A 340 AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV 382 (409)
T ss_dssp HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC
T ss_pred HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC
Confidence 88999999866 59999987433 22568999976
No 85
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.98 E-value=2e-30 Score=238.61 Aligned_cols=301 Identities=14% Similarity=0.127 Sum_probs=225.7
Q ss_pred ChHHHHHHHccCCC----CCCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNE----DYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~----~~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+... .... .+..+..+++++.+++++|.+ ++++++||++|+..++.+++.+||.|++..
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~ 134 (398)
T 3a2b_A 58 TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKE---AAILFSTGFQSNLGPLSCLMGRNDYILLDE 134 (398)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHSSCTTCEEEEET
T ss_pred CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEECC
Confidence 56677777766321 1111 123467889999999999963 599999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcE
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~ 171 (367)
|.|.+.. ..++..|.+++.++. +|++++++++++....++++|++++++||||.+.|+++|.++|++ +|++
T Consensus 135 p~~~~~~--~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~--~~~~ 205 (398)
T 3a2b_A 135 RDHASII--DGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANE--FDAA 205 (398)
T ss_dssp TCCHHHH--HHHHHSSSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHH--HTCE
T ss_pred ccCHHHH--HHHHHcCCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHH--cCcE
Confidence 9877653 456778999999886 489999999986321168999999999999999999999999999 9999
Q ss_pred EEEeeeeccCcee---ecccc-----ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 172 FLVDGVSSICAID---FRMDE-----WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 172 vi~D~~~~~~~~~---~~~~~-----~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
+|+|++|+.+... .+... .++|++++|+||+++ +.| |++++++++++++..... .+.
T Consensus 206 li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~------------~~~- 270 (398)
T 3a2b_A 206 VMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDADVIDFLKHNAR------------SVM- 270 (398)
T ss_dssp EEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECHHHHHHHHHHCH------------HHH-
T ss_pred EEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCHHHHHHHHHhcc------------cce-
Confidence 9999999765421 11111 135999999999995 777 999999998887754210 000
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIV 323 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (367)
..++++..+.+++.++++.+.. ++++++++.++++++.+.|+++|+++..+ . +.++++.++++.+..++.
T Consensus 271 ---~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~-g~~~~~~~~~~~~~~~l~ 340 (398)
T 3a2b_A 271 ---FSASMTPASVASTLKALEIIQN--EPEHIEKLWKNTDYAKAQLLDHGFDLGAT----E-SPILPIFIRSNEKTFWVT 340 (398)
T ss_dssp ---SSBCCCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHTTCCBCSC----C-SSEEEEECCCHHHHHHHH
T ss_pred ---ecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHhcCCCcCCC----C-CCEEEEEcCCHHHHHHHH
Confidence 1223555555556667776532 56788899999999999999988877654 2 357888886545677899
Q ss_pred HHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHH
Q 017726 324 RRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 324 ~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~ 358 (367)
+.|.++ ||.+.++..+. ..+++||++....++++
T Consensus 341 ~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~ 377 (398)
T 3a2b_A 341 KMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQ 377 (398)
T ss_dssp HHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHH
T ss_pred HHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHH
Confidence 999877 99999875532 24679999876555443
No 86
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.98 E-value=1.1e-30 Score=237.43 Aligned_cols=311 Identities=13% Similarity=0.064 Sum_probs=224.8
Q ss_pred cccccCC--CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 10 NHLFVPG--PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 10 ~~~~~~~--p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
.+++..| |.+.++.+.+++.+.... +.++. ....++++.++++++.+++ ++++++|+++++..++.++ +||+
T Consensus 26 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~--~~~~~l~~~la~~~~~~~~-~v~~~~g~~~al~~~~~~~--~gd~ 100 (364)
T 1lc5_A 26 LLDFSANINPLGMPVSVKRALIDNLDCIERYPD--ADYFHLHQALARHHQVPAS-WILAGNGETESIFTVASGL--KPRR 100 (364)
T ss_dssp SEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC--TTCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHHHHHHH--CCSE
T ss_pred eEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHCcCHH-HEEECCCHHHHHHHHHHHc--CCCe
Confidence 3444444 344678899998886532 22222 2467999999999998754 5999999999999999887 7799
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCC-HHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHH
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK-LDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKL 162 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d-~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~ 162 (367)
|++..|.|++.. ..++..|.+++.++.+.+..++ ++++.+.+. +++++|++++|+||||.++| +++|.++
T Consensus 101 vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~ 174 (364)
T 1lc5_A 101 AMIVTPGFAEYG--RALAQSGCEIRRWSLREADGWQLTDAILEALT----PDLDCLFLCTPNNPTGLLPERPLLQAIADR 174 (364)
T ss_dssp EEEEESCCTHHH--HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC----TTCCEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEeCCCcHHHH--HHHHHcCCeEEEEeCCcccccchhHHHHHhcc----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 999999888753 5567789999999987532344 465655554 46799999999999999998 8889999
Q ss_pred HHhcCCCcEEEEeeeeccCce----eecc-ccccceEEEecCCCcccCCCc--ceeee-eCHHHHHHhccCCCCceeech
Q 017726 163 LDEYRHPALFLVDGVSSICAI----DFRM-DEWGIDVALTGSQKALSLPTG--MGIVC-ASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~----~~~~-~~~~~d~~~~s~~K~~~g~~g--~g~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (367)
|++ +|+++|+|++|+.+.. ..+. ...+.++++.|+||+++ ++| +|+++ .++++++++.....
T Consensus 175 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~------- 244 (364)
T 1lc5_A 175 CKS--LNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYA-IPGLRLGYLVNSDDAAMARMRRQQM------- 244 (364)
T ss_dssp HHH--HTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTT-CTTTCCEEEECCCHHHHHHHHHHSC-------
T ss_pred hhh--cCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhc-CCccceEEEEECCHHHHHHHHHhCC-------
Confidence 999 9999999999986442 1222 23467899999999995 344 69999 99998887764311
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
.++++...+.++.++++. ...++++++++.++++++.+.|+++ |+.+..+ .+.++++.+
T Consensus 245 -------------~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~g~~~~~~~ 304 (364)
T 1lc5_A 245 -------------PWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG-----RANYLLLRC 304 (364)
T ss_dssp -------------TTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-----SSSEEEEEE
T ss_pred -------------CCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-----CCeEEEEEC
Confidence 234666555555555544 1237788889999999999999987 8776543 234667777
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++ +..++.+.|.++ ||.+.+|..+ ..++++||++. ..++.+.+.++|+
T Consensus 305 ~~--~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~ 354 (364)
T 1lc5_A 305 ER--EDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALR 354 (364)
T ss_dssp SC--TTCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred CC--cHHHHHHHHHHC-CcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHH
Confidence 53 345788999765 9999987543 33578999954 3334444555554
No 87
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.98 E-value=3e-31 Score=246.21 Aligned_cols=304 Identities=15% Similarity=0.068 Sum_probs=219.0
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
.++.+.+++.+.... ...|.......++|+.+++++ |.+ .+++|++++|+++++..++.+++.+||+|++
T Consensus 59 ~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~ 138 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVL 138 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEE
Confidence 467788877664321 112222233457777777777 843 3346999999999999999998999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcc-----CCCCccEE-EEEecCCCcccccc---HHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAAD-----TAHTIKAI-CIVHNETATGVTNN---LSKVR 160 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~-----~~~~~~lv-~~~~~~n~tG~~~~---~~~i~ 160 (367)
..|.|++.. ..++..|.+++.++.++++ +|++++++++++. . +++++| ++++|+||||.++| +++|.
T Consensus 139 ~~p~y~~~~--~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~-~~~~~v~~~~~~~nptG~~~~~~~l~~l~ 214 (425)
T 1vp4_A 139 DDPAYLGAI--NAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKI-KQVKFIYVVSNFHNPAGVTTSLEKRKALV 214 (425)
T ss_dssp EESCCHHHH--HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCG-GGEEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred eCCCcHHHH--HHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccC-CCceEEEECCCCCCCCCCcCCHHHHHHHH
Confidence 999887753 5567789999999987654 8999999999751 1 267888 57899999999987 56788
Q ss_pred HHHHhcCCCcEEEEeeeeccCce----eecc---ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 161 KLLDEYRHPALFLVDGVSSICAI----DFRM---DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~----~~~~---~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
++|++ +|+++|+|++|+.+.. ..++ ...+.++++.|++|++++..++|++++++++++++.....
T Consensus 215 ~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~------ 286 (425)
T 1vp4_A 215 EIAEK--YDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQ------ 286 (425)
T ss_dssp HHHHH--TTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHH------
T ss_pred HHHHH--cCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCHHHHHHHHHHhh------
Confidence 99999 9999999999986432 1122 1225689999999999622236999999998877753210
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHc-----CCccccCCCccCCCc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-FEEGLENVIERHRRLGKATRLAVEAW-----GLKNCTQKEEWFSDT 307 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~ 307 (367)
. . .++.+...+.++..+++.. .+..++++++++.++++++.+.|++. |+.+..+ ..+.
T Consensus 287 -------~--~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~----~~g~ 350 (425)
T 1vp4_A 287 -------S--A---DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKS----EGGL 350 (425)
T ss_dssp -------H--H---HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCC----SBSS
T ss_pred -------h--h---cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecC----CccE
Confidence 0 0 1234555555555555542 11236788888999999999999885 5776654 3455
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecC
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLG 352 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~ 352 (367)
+++++++++.+..++++.|.++ ||.+.+|..+. ..+++||++..
T Consensus 351 ~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~ 398 (425)
T 1vp4_A 351 FIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCL 398 (425)
T ss_dssp EEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCC
Confidence 7888887666778899999877 99999875432 34689999755
No 88
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.98 E-value=3.6e-30 Score=237.17 Aligned_cols=301 Identities=15% Similarity=0.123 Sum_probs=222.9
Q ss_pred ChHHHHHHHccCCCC----CCCCcH----HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNED----YRSPAV----PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~----~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+.... +....+ .....++++.+++++|.+ + .+++++|++++..++.+++.+||.|++..
T Consensus 60 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~-~i~~~sGs~a~~~~~~~~~~~gd~v~~~~ 136 (401)
T 1fc4_A 60 NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME--D-AILYSSCFDANGGLFETLLGAEDAIISDA 136 (401)
T ss_dssp TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHTTHHHHCCTTCEEEEET
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC--c-EEEeCChHHHHHHHHHHHcCCCCEEEEcc
Confidence 367788887764321 111122 366889999999999987 3 35557779999998888899999999998
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCC--CccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~--~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
+.|.+.. ..++..|.+++.++. .|++++++++++.... ++++|++++++||||.+.|+++|.++|++ +|
T Consensus 137 ~~~~~~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~ 207 (401)
T 1fc4_A 137 LNHASII--DGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADK--YD 207 (401)
T ss_dssp TCCHHHH--HHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHH--TT
T ss_pred hhHHHHH--HHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHH--cC
Confidence 8776543 456778999888873 4789999998752101 67999999999999999999999999999 99
Q ss_pred cEEEEeeeeccCce-e--------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 170 ALFLVDGVSSICAI-D--------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 170 ~~vi~D~~~~~~~~-~--------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
+++|+|++|+.+.. + .+.. .+.|+++.|+||+++++.| |++++++++++++..... .
T Consensus 208 ~~li~De~~~~g~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~------------~ 273 (401)
T 1fc4_A 208 ALVMVDDSHAVGFVGENGRGSHEYCDVM-GRVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR------------P 273 (401)
T ss_dssp EEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH------------H
T ss_pred CEEEEECcccccccCCCCCccHHHcCCC-cCCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCc------------C
Confidence 99999999964332 1 2222 2579999999999966776 999999999887764210 0
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
+. +.++++...++++.++++.+.+ .+++++++.++++++.+.|+++|+++..+ .+.++++.++++.+..
T Consensus 274 ~~----~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~ 342 (401)
T 1fc4_A 274 YL----FSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAGA-----DHAIIPVMLGDAVVAQ 342 (401)
T ss_dssp HH----HSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCCS-----SSSEEEEEEECHHHHH
T ss_pred ce----eCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCC-----CCCEEEEEcCChHHHH
Confidence 00 0224667666777777777654 46788899999999999999988777632 4557788885444567
Q ss_pred HHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHH
Q 017726 321 EIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~ 358 (367)
++.+.|.++ ||.+.++..+. ..+++||++....++++
T Consensus 343 ~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~ 382 (401)
T 1fc4_A 343 KFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQ 382 (401)
T ss_dssp HHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred HHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHH
Confidence 899999766 99999875432 23579999875555443
No 89
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=4.2e-31 Score=244.12 Aligned_cols=318 Identities=13% Similarity=0.078 Sum_probs=225.4
Q ss_pred CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
++++.+.+++.+.... ...|.......++++.++++++ .++.+++++++|+++++..++.+++.+||+|++.
T Consensus 36 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~ 115 (410)
T 3e2y_A 36 SPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIM 115 (410)
T ss_dssp CCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEe
Confidence 4678888888875432 1122211223466666666665 3342469999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCC-----------CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESD-----------WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NL 156 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~-----------~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~ 156 (367)
.|.|++.. ..++..|.+++.++.+ .++.+|+++++++++ +++++|++++|+||||.++ ++
T Consensus 116 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~----~~~~~v~~~~p~nptG~~~~~~~l 189 (410)
T 3e2y_A 116 VPFYDCYE--PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS----SKTKAIILNTPHNPLGKVYTRQEL 189 (410)
T ss_dssp ESCCTTHH--HHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHH
T ss_pred CCCchhhH--HHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcC----CCceEEEEeCCCCCCCcCcCHHHH
Confidence 99887753 5567789999999876 244689999999886 4779999999999999996 58
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCce----eeccc----cccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCC
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAI----DFRMD----EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~----~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
++|.++|++ +|+++|+|++|+.+.. ..++. ..+.++++.|++|.++ ++.++|++++++++++.+....
T Consensus 190 ~~l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~- 266 (410)
T 3e2y_A 190 QVIADLCVK--HDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQ- 266 (410)
T ss_dssp HHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHH-
T ss_pred HHHHHHHHH--cCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHH-
Confidence 889999999 9999999999975332 11111 1245699999999995 2334799999999888775321
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH------HHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI------FEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 301 (367)
... .++++.....++..++... .+..++++++++.++++++.+.|+++|+.+..+
T Consensus 267 ---------------~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-- 327 (410)
T 3e2y_A 267 ---------------QNS--FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVP-- 327 (410)
T ss_dssp ---------------HTT--TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBC--
T ss_pred ---------------Hhh--ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC--
Confidence 111 3345665555555555531 122277888999999999999999998887766
Q ss_pred ccCCCceEEEEcCC---CCC--------HHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEeecCCCCHHHHHHhh
Q 017726 302 EWFSDTVTAVIVPS---HIN--------SSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 302 ~~~~~~~~~~~~~~---~~~--------~~~l~~~L~~~~gv~v~~g~~~~-------~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
..+.++++.++. +.+ ..++++++.+++||.+.+|..+. ..+++||++....++.+...+.
T Consensus 328 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~ 405 (410)
T 3e2y_A 328 --DGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEI 405 (410)
T ss_dssp --SBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHH
T ss_pred --CccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHH
Confidence 355567777632 122 24788877777799999885442 2478999976644444555555
Q ss_pred hhc
Q 017726 364 LFQ 366 (367)
Q Consensus 364 l~~ 366 (367)
|.+
T Consensus 406 l~~ 408 (410)
T 3e2y_A 406 FRA 408 (410)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
No 90
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=3.4e-30 Score=235.97 Aligned_cols=304 Identities=14% Similarity=0.125 Sum_probs=223.1
Q ss_pred CChHHHHHHHccCCCC-------CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNED-------YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-------~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+.++.+.+++.+.... .+. +.......++++.+++++|.+ + .+++++|++++..++.+++++||.|++.
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~-~i~~~sGt~a~~~~~~~~~~~gd~v~~~ 129 (384)
T 1bs0_A 53 SHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS--R-ALLFISGFAANQAVIAAMMAKEDRIAAD 129 (384)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC--c-EEEeCCcHHHHHHHHHHhCCCCcEEEEc
Confidence 3567777777664221 111 123467889999999999985 3 5666777999999999889999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCc
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA 170 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~ 170 (367)
.+.|.+.. ..++..|.+++.++. .|++++++++++.. +++++|++++++||||.++|+++|.++|++ +|+
T Consensus 130 ~~~~~~~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~ 199 (384)
T 1bs0_A 130 RLSHASLL--EAASLSPSQLRRFAH-----NDVTHLARLLASPC-PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQ--HNG 199 (384)
T ss_dssp TTCCHHHH--HHHHTSSSEEEEECT-----TCHHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCCHHHHHHHHHH--TTC
T ss_pred ccccHHHH--HHHHHcCCCEEEeCC-----CCHHHHHHHHHhcC-CCCeEEEEeCCCCCCCCccCHHHHHHHHHH--cCc
Confidence 88766543 456778999988874 48999999998643 247899999999999999999999999999 999
Q ss_pred EEEEeeeeccCcee-----e-ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 171 LFLVDGVSSICAID-----F-RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 171 ~vi~D~~~~~~~~~-----~-~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
++|+|++|+.+... + .....+.|++++|+||+++ ++| |++++++++++++..... .+..
T Consensus 200 ~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~------------~~~~- 264 (384)
T 1bs0_A 200 WLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSG-AAVLCSSTVADYLLQFAR------------HLIY- 264 (384)
T ss_dssp EEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCC-EEEEECHHHHHHHHHHCH------------HHHS-
T ss_pred EEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccC-cEEEeCHHHHHHHHHhch------------hhhc-
Confidence 99999999765421 1 1111357899999999995 777 999999998887653210 0111
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
..+++...+.++.++++.+.+...++.++++.++++++.+.|+++|+++..+ .+.++++.++++.+..++.+
T Consensus 265 ---~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~~l~~ 336 (384)
T 1bs0_A 265 ---STSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS-----CSAIQPLIVGDNSRALQLAE 336 (384)
T ss_dssp ---SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC-----CSSBCCEEEESHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCC-----CCCEEEEEeCCHHHHHHHHH
Confidence 1146666667777778776532356788899999999999999888776532 23455677654445778999
Q ss_pred HHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHHH
Q 017726 325 RAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~~ 359 (367)
.|.++ ||.+.++..+. ..+++||++....+.+++
T Consensus 337 ~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i 373 (384)
T 1bs0_A 337 KLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDI 373 (384)
T ss_dssp HHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHH
T ss_pred HHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHH
Confidence 99766 99999875432 236799998765555443
No 91
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=9.4e-31 Score=243.31 Aligned_cols=318 Identities=11% Similarity=0.020 Sum_probs=226.7
Q ss_pred ChHHH--HHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh-----cCCCCce---EEecCChhHHHHHHHHccCCCCCeE
Q 017726 20 IPDQV--IRAMNRNNED--YRSPAVPALTKTLLEDIKKIF-----KTTSGTP---FLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 20 ~~~~v--~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~-----~~~~~~~---v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.++.+ ++++.+.... ...|.......++++.+++++ +.++ ++ +++|+|+++|+..++.+++.+||+|
T Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~~~i~~t~g~~~al~~~~~~l~~~gd~V 140 (430)
T 2x5f_A 62 GKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSI-DNMSRPIVTNALTHGLSLVGDLFVNQDDTI 140 (430)
T ss_dssp EECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCG-GGBCCCEEESHHHHHHHHHHHHHCCTTCEE
T ss_pred CchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCC-CccceEEEcCCchHHHHHHHHHHhCCCCEE
Confidence 34444 7777765432 223332234568899999988 6654 45 8999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHH-hCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHH
Q 017726 88 ISFLIGQFSLLWIDQQQR-LNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKL 162 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~ 162 (367)
++..|.|++.. ..++. .|.+++.++.+. ++.+|++++++++++.. ++++++++++|+||||.++| +++|.++
T Consensus 141 l~~~p~y~~~~--~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~ 217 (430)
T 2x5f_A 141 LLPEHNWGNYK--LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYN-KDKVIMILNYPNNPTGYTPTHKEVTTIVEA 217 (430)
T ss_dssp EEESSCCTHHH--HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCC-SSEEEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred EEcCCcCccHH--HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcC-CCCEEEEEcCCCCCCCCcCCHHHHHHHHHH
Confidence 99999888753 55677 899999999865 45789999999998633 36799999999999999998 6677777
Q ss_pred HHh---cCCCcEEEEeeeeccCce------ee--cccc-ccc---eEEEecCCCcccCCCc--ceeeee---CHHHHHHh
Q 017726 163 LDE---YRHPALFLVDGVSSICAI------DF--RMDE-WGI---DVALTGSQKALSLPTG--MGIVCA---SPKALEAS 222 (367)
Q Consensus 163 ~~~---~~~~~~vi~D~~~~~~~~------~~--~~~~-~~~---d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~ 222 (367)
|++ ..+|+++|+|++|+.+.. ++ ++.. .+. ++++.|+||+++ ++| +|++++ ++++++++
T Consensus 218 ~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l 296 (430)
T 2x5f_A 218 IKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF-AWGFRVGFMTFGTSDQTTKEVL 296 (430)
T ss_dssp HHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEBCCCHHHHHHH
T ss_pred HHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCC-CCCCCeEEEEEecCCHHHHHHH
Confidence 765 226899999999875432 11 2222 345 788999999994 445 699999 99988877
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH-HHH-HhChHHHHHHHHHHHHHHHHHHH----HcCCcc
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD-LIF-EEGLENVIERHRRLGKATRLAVE----AWGLKN 296 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~-~~~-~~g~~~~~~~~~~~~~~l~~~L~----~~g~~~ 296 (367)
..... ....+. .++++.....++..+++ ... ...++++++++.++++++.+.|+ +.|+.+
T Consensus 297 ~~~~~------------~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~ 362 (430)
T 2x5f_A 297 EAKVK------------GLIRSN--ISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA 362 (430)
T ss_dssp HHHHH------------HHHHTT--TSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEE
T ss_pred HHHHh------------hhhhcc--cCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcee
Confidence 53210 000011 23466666666666776 311 11145588899999999999998 557766
Q ss_pred ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
..+ .++.+++++++ +.+..++.+.|.+++||.+.+| ..+++||++.. ..++.+...+.|.
T Consensus 363 ~~~----~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~~~~~l~ 423 (430)
T 2x5f_A 363 YDF----NSGYFMAIKVH-DVDPEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPHVFDSIA 423 (430)
T ss_dssp CCC----CBSSEEEEEES-SSCHHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHHHHHHHH
T ss_pred eCC----CceEEEEeCCC-CCCHHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHHHHHHHH
Confidence 655 35556888886 6788899999987469999987 34689999873 3333444444443
No 92
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=6.9e-30 Score=237.12 Aligned_cols=282 Identities=15% Similarity=0.148 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 120 (367)
.....++++.+++++|.+ + .++++||++++..++.+++.+||.|++..+.|.+.. ..++..|.+++.++.
T Consensus 108 ~~~~~~l~~~la~~~g~~--~-~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~--~~~~~~g~~~~~~~~----- 177 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTT--G-AIVFSTGYMANLGIISTLAGKGEYVILDADSHASIY--DGCQQGNAEIVRFRH----- 177 (427)
T ss_dssp CHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHH--HHHHHSCSEEEEECT-----
T ss_pred cHHHHHHHHHHHHHhCCC--c-eEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHH--HHHHHcCCeeEEeCC-----
Confidence 467789999999999875 3 566788899999999888999999999998777653 446778999888874
Q ss_pred CCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee---------ecccccc
Q 017726 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWG 191 (367)
Q Consensus 121 ~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~ 191 (367)
.|++++++++++....++++|++++++||+|.+.|+++|.++|++ +|+++|+|++|+.+... +++. .+
T Consensus 178 ~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~--~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~ 254 (427)
T 2w8t_A 178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK--HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQ 254 (427)
T ss_dssp TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHH--TTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TC
T ss_pred CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHH--cCCEEEEECCccccccCCCCCchHhhcCCC-cC
Confidence 489999999986321168999999999999999999999999999 99999999999876543 2222 25
Q ss_pred ceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh
Q 017726 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL 271 (367)
Q Consensus 192 ~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~ 271 (367)
+|+++.|++|+++ ++| |++++++++++.+..... .+. +.++.+...++++.++++.+.+ +
T Consensus 255 ~di~~~s~sK~~g-~~g-G~v~~~~~l~~~l~~~~~------------~~~----~~~~~~~~~~aa~~~al~~~~~--~ 314 (427)
T 2w8t_A 255 IDFVVGTFSKSVG-TVG-GFVVSNHPKFEAVRLACR------------PYI----FTASLPPSVVATATTSIRKLMT--A 314 (427)
T ss_dssp CSEEEEESSSTTC-SCC-EEEEECCTTGGGGGGTCH------------HHH----SSCCCCHHHHHHHHHHHHHHTS--C
T ss_pred CcEEEecchhhhc-cCC-CEEEeCHHHHHHHHHhcc------------ccc----ccCCCCHHHHHHHHHHHHHHhc--C
Confidence 7999999999995 777 999999988777654210 000 1224666677777778877643 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEE
Q 017726 272 ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRI 348 (367)
Q Consensus 272 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi 348 (367)
+++++++.++++++.+.|+++|+++..+. ..+.++++.+++..+..++.+.|.++ ||.+.++..+. ...++|+
T Consensus 315 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi 390 (427)
T 2w8t_A 315 HEKRERLWSNARALHGGLKAMGFRLGTET---CDSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRC 390 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEESCSS---CCSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCC---CCCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEE
Confidence 78889999999999999999888776331 13457888886444567899999876 99999875432 2357999
Q ss_pred eecCCCCHHHH
Q 017726 349 GHLGHLNEVMF 359 (367)
Q Consensus 349 ~~~~~~~~~~~ 359 (367)
++....+++++
T Consensus 391 ~~~~~~t~e~i 401 (427)
T 2w8t_A 391 SICAEHTPAQI 401 (427)
T ss_dssp ECCTTCCHHHH
T ss_pred EeCCCCCHHHH
Confidence 98775555443
No 93
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.97 E-value=2.4e-29 Score=237.50 Aligned_cols=323 Identities=13% Similarity=0.049 Sum_probs=233.9
Q ss_pred CCCChHHHHHHHccCCCCC-----CCCcHHHHHHHHHHHHHHHhcCC--CCc--eEEecCChhHHHHHHHHccCCC----
Q 017726 17 PVHIPDQVIRAMNRNNEDY-----RSPAVPALTKTLLEDIKKIFKTT--SGT--PFLIPTTGTGAWESALTNTLSP---- 83 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~--~~~--~v~~~~ggt~al~~~~~~~~~~---- 83 (367)
++.+++.+.+++.+..... .++.......++++++++++|++ +++ ..++++||++|+..++.++..+
T Consensus 65 t~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~ 144 (502)
T 3hbx_A 65 TTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (502)
T ss_dssp CCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHH
Confidence 4566778888888764431 12334566778999999999998 332 1346899999999888765443
Q ss_pred ----CC-----eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 84 ----GD-----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 84 ----gd-----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
|+ .|+++.+.|++ +...++..|++++.++.+++ +.+|+++++++++ ++|++|++++++||||.+
T Consensus 145 ~~~~G~~~~~~~vi~~~~~h~s--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~t~~v~~~~~~n~tG~~ 218 (502)
T 3hbx_A 145 RKAEGKPVDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVD----ENTICVAAILGSTLNGEF 218 (502)
T ss_dssp HHHTTCCCSCCEEEEETTCCHH--HHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCC----TTEEEEEEEBSCTTTCCB
T ss_pred HHhcCCCCCCcEEEEcCCchHH--HHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHh----hCCEEEEEecCCCCCCcc
Confidence 66 89999888776 34668889999999998865 7899999999998 467999999999999999
Q ss_pred ccHHHHHHHHHhcCC------CcEEEEeeeeccCce-------eeccccccceEEEecCCCcccCCCcceeeeeCHH-HH
Q 017726 154 NNLSKVRKLLDEYRH------PALFLVDGVSSICAI-------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPK-AL 219 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~------~~~vi~D~~~~~~~~-------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~ 219 (367)
.|+++|.++|++ + |+++++|++|+.+.. +.++...++|++++++||++.+|.|+|+++++++ .+
T Consensus 219 ~~l~~I~~ia~~--~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l 296 (502)
T 3hbx_A 219 EDVKLLNDLLVE--KNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDL 296 (502)
T ss_dssp CCHHHHHHHHHH--HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred cCHHHHHHHHHH--hhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHh
Confidence 999999999999 6 999999999985432 2233334799999999999988999998887643 33
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT 298 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 298 (367)
....... ..+.. .........++.+...++++++++..+..+|++++.++..++++++.+.|+++ +++++.
T Consensus 297 ~~~~~~~--~~yl~------~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 368 (502)
T 3hbx_A 297 PEELIFH--INYLG------ADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVS 368 (502)
T ss_dssp CGGGCEE--ECSSS------SCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECS
T ss_pred hHHhccC--ccccc------CCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 2211100 00000 00000001234555566888889999888889999999999999999999998 588876
Q ss_pred CCCccCCCceEEEEcCCC--CCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~~~ 359 (367)
+.+ ...+++|+++.+ .+..++.+.|.++ ||.+.....+ ....++||++....+.+|+
T Consensus 369 ~~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edi 430 (502)
T 3hbx_A 369 KDE---GVPLVAFSLKDSSCHTEFEISDMLRRY-GWIVPAYTMPPNAQHITVLRVVIREDFSRTLA 430 (502)
T ss_dssp CSS---SSSEEEEEESSCSSCCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred CCC---CceEEEEEecCCCcCCHHHHHHHHHhC-CcEEeeccCCcccCCceEEEEEeCCCCCHHHH
Confidence 421 344788888542 5667999999755 9987543222 1235699998776665433
No 94
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.97 E-value=4.9e-30 Score=242.59 Aligned_cols=343 Identities=11% Similarity=0.059 Sum_probs=230.6
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC---CC--CCcHHHHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHHccCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED---YR--SPAVPALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLS 82 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~~~~~-~~~v~~~~ggt~al~~~~~~~~~ 82 (367)
+.+.+.|++...+..+.+.+....+. .+ ++......+++.+++++++|.+. ...+++++|||+|+..++.+...
T Consensus 97 ~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~ 176 (511)
T 3vp6_A 97 RFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARY 176 (511)
T ss_dssp TEESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHH
Confidence 45556677766666555555543222 12 33445667788889999999984 34689999999999988765432
Q ss_pred --------------CCCeEEEEeCCcchHHHHHHHHHhCC---ceEEEeCCCCCCCCHHHHHHHHhccC--CCCccEEEE
Q 017726 83 --------------PGDRIISFLIGQFSLLWIDQQQRLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICI 143 (367)
Q Consensus 83 --------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~~~lv~~ 143 (367)
+++.|+++...|++. .+.++..|+ +++.++.+.++.+|+++|+++|++.. ..++++|++
T Consensus 177 ~~~~~~~~~G~~~~~~~~v~~s~~~H~s~--~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~ 254 (511)
T 3vp6_A 177 KYFPEVKTKGMAAVPKLVLFTSEQSHYSI--KKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNA 254 (511)
T ss_dssp HHCTHHHHHCGGGSCCEEEEEETTSCTHH--HHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HhhhhhhhcCcccCCCeEEEECCCchHHH--HHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 566888888888875 366777888 99999999889999999999998631 022799999
Q ss_pred EecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec-----cc-cccceEEEecCCCcccCCCcceeeeeCHH
Q 017726 144 VHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-----MD-EWGIDVALTGSQKALSLPTGMGIVCASPK 217 (367)
Q Consensus 144 ~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-----~~-~~~~d~~~~s~~K~~~g~~g~g~~~~~~~ 217 (367)
++++|++|.+.|+++|.++|++ +|+++++|++|+.+....+ .. ..++|++++++|||+++|.|+|+++++++
T Consensus 255 ~~~~~~~G~vd~l~~I~~ia~~--~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~ 332 (511)
T 3vp6_A 255 TAGTTVYGAFDPIQEIADICEK--YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK 332 (511)
T ss_dssp EBSCSSSCCBCCHHHHHHHHHH--HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred ecCCCCCcccccHHHHHHHHHH--cCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH
Confidence 9999999999999999999999 9999999999988765321 11 12579999999999998999999888665
Q ss_pred -HHHHhccCCCCceeechHHHHHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CC
Q 017726 218 -ALEASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GL 294 (367)
Q Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~ 294 (367)
+.++...................+..+.+ ...+.. ...++++++++.+..+|+++++++..++++++.+.|++. |+
T Consensus 333 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~ 411 (511)
T 3vp6_A 333 GILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF 411 (511)
T ss_dssp THHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTE
T ss_pred HHHHHHhccCCccccCcccccccccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 44443221111100000000000000000 000111 133678888888888889999999999999999999997 88
Q ss_pred ccccCCCccCCCceEEEEc-CCCCC---------------HHHHHHHHHhhCCeEEcc-CCCCCCCcEEEEeecC-CCCH
Q 017726 295 KNCTQKEEWFSDTVTAVIV-PSHIN---------------SSEIVRRAWQRYNLSLGL-GLNKVAGKVFRIGHLG-HLNE 356 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~l~~~L~~~~gv~v~~-g~~~~~~~~iRi~~~~-~~~~ 356 (367)
+++.+.+. .. .+++|+. |.+.+ ..++.++|.++ |+.+.. ........++|+++.+ ..+.
T Consensus 412 ~l~~~~~p-~~-~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRi~~~~~~~t~ 488 (511)
T 3vp6_A 412 EMVFNGEP-EH-TNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMVISNPAATQ 488 (511)
T ss_dssp EESSSSCC-SS-SCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEECCCCTTCCH
T ss_pred EEEecCCC-Ce-EEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEeCCceEEEEEEecCCCCCH
Confidence 88773111 23 3466664 32221 23688888877 654432 1111112469999844 4444
Q ss_pred HHH
Q 017726 357 VMF 359 (367)
Q Consensus 357 ~~~ 359 (367)
+|+
T Consensus 489 ~di 491 (511)
T 3vp6_A 489 SDI 491 (511)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 95
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.97 E-value=5.1e-30 Score=231.86 Aligned_cols=308 Identities=13% Similarity=0.085 Sum_probs=219.3
Q ss_pred cccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 10 NHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 10 ~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.|.- .|.+.++.+.+++.+.......|.... ..++|+.++++++++++ ++++|+|+++++..++.++. ||+|
T Consensus 17 ~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~-~i~~t~g~~~al~~~~~~l~--gd~V 92 (350)
T 3fkd_A 17 IVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPD-AGTLRQMLAKRNSVDNN-AILVTNGPTAAFYQIAQAFR--GSRS 92 (350)
T ss_dssp CEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTT-CHHHHHHHHHHTTCCGG-GEEEESHHHHHHHHHHHHTT--TCEE
T ss_pred EEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCc-HHHHHHHHHHHhCcCHH-HEEEcCCHHHHHHHHHHHHC--CCEE
Confidence 344443 345678889999988653322222112 26899999999998764 59999999999999998877 9999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
++..|.|.+.. ..++..|++++.++. +....+++ +++++|++++|+||||.++|.+++.++++.
T Consensus 93 i~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~------------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~- 157 (350)
T 3fkd_A 93 LIAIPSFAEYE--DACRMYEHEVCFYPSNEDIGEADF------------SNMDFCWLCNPNNPDGRLLQRTEILRLLND- 157 (350)
T ss_dssp EEEESCCHHHH--HHHHHTTCEEEEEETTSCGGGSCC------------TTCSEEEEESSCTTTCCCCCHHHHHHHHHH-
T ss_pred EEeCCCcHHHH--HHHHHcCCeEEEEecCCccccCcc------------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHh-
Confidence 99999877643 567889999999998 65444443 257999999999999999999999999988
Q ss_pred CCC-cEEEEeeeeccCcee-----eccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 167 RHP-ALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 167 ~~~-~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
.+ .++|+|++|+.+... ......+.++++.|++|+++ .+.++|+++.++++++++.....
T Consensus 158 -~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~------------ 224 (350)
T 3fkd_A 158 -HPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST------------ 224 (350)
T ss_dssp -CTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC------------
T ss_pred -CCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC------------
Confidence 43 599999998754322 12223356799999999995 23447999999999888875321
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
+++++...+.++..+++..... .+++.+ ..++++++.+.|+++ |+.+..+ .+.+++++++.. +
T Consensus 225 --------~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~~~~~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~~~-~ 288 (350)
T 3fkd_A 225 --------PWAVNALAIEAAKFILIHPAQF-TLPIRK-WQRNTVDFITALNRLDGVEVHPS-----GTTFFLLRLKKG-T 288 (350)
T ss_dssp --------TTCSCHHHHHHHHHHHHCTTTT-CCCHHH-HHHHHHHHHHHHHHSTTEEECCC-----SSSEEEEEESSS-C
T ss_pred --------CCCCCHHHHHHHHHHHhCHHHH-HHHHHH-HHHHHHHHHHHHhcCCCcEECCC-----CCcEEEEECCCC-C
Confidence 3346665444444444432211 233333 348899999999998 8877654 334667888655 7
Q ss_pred HHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
..++.+.|.+++||.+.+|..+ ..++++||++ +..++.|.+.++|++
T Consensus 289 ~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~-~~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 289 AAELKKYMLEEYNMLIRDASNFRGLDESYVRITT-QRPAQNQLFIKALET 337 (350)
T ss_dssp HHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc-CCHHHHHHHHHHHHH
Confidence 8899999987579999988543 3467899995 444555566666654
No 96
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=3.4e-30 Score=240.83 Aligned_cols=317 Identities=10% Similarity=0.054 Sum_probs=219.8
Q ss_pred CChHHHHHHHccCCC-----C-CCCCcHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 19 HIPDQVIRAMNRNNE-----D-YRSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~-----~-~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
+.++.+.+++.+... . ...|.......++++.+++++ +.++ ++|++++|+++++..+ .+++.+||.|+
T Consensus 82 ~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~-~~i~~t~G~~~al~~~-~~l~~~gd~Vl 159 (449)
T 3qgu_A 82 PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAA-DEIFISDGSKCDIARI-QMMFGSKPTVA 159 (449)
T ss_dssp CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCG-GGEEEESCHHHHHHHH-HHHHCSSSCEE
T ss_pred CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCH-HHEEEccCHHHHHHHH-HHHhCCCCEEE
Confidence 467777777766432 1 223333345678999999998 5554 4599999999999988 77889999999
Q ss_pred EEeCCcchHHHHHHHHHhCCc----------eEEEeCCCCCCC--CHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 89 SFLIGQFSLLWIDQQQRLNFN----------VDVVESDWGEGA--KLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~~~~--d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+..|.|++.. ..++..|.+ ++.++.+.++.+ |+++. +++++|++++|+||||.+++
T Consensus 160 ~~~p~~~~~~--~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~l~~p~NPtG~~~~~ 228 (449)
T 3qgu_A 160 VQDPSYPVYV--DTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA---------KRTDIIFFCSPNNPTGAAATR 228 (449)
T ss_dssp EEESCCTHHH--HHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC---------CCCSEEEEESSCTTTCCCCCH
T ss_pred EcCCCChhHH--HHHHHcCCcccccccccceeEEEecccccCCcCChhHc---------CCCCEEEEeCCCCCCCCcCCH
Confidence 9999888754 556778888 999998764333 33221 36799999999999999987
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCcee----ecccc----ccceEEEecCCCccc-CCCcceeeeeCHHHHHHhcc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAID----FRMDE----WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKT 224 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~----~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~ 224 (367)
+++|.++|++ +|+++|+|++|+.+... .++.. .+.++++.|++|+++ ++.++|++++++++++..
T Consensus 229 ~~l~~l~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~-- 304 (449)
T 3qgu_A 229 AQLTELVNFARK--NGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYAN-- 304 (449)
T ss_dssp HHHHHHHHHHHH--HTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTT--
T ss_pred HHHHHHHHHHHH--CCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhh--
Confidence 6678888989 99999999999864321 12211 256799999999995 334479999988765420
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
...+........... .++++...+.+..+++.......++++++++.++++++.+.|+++|+.+..+ .
T Consensus 305 ------~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~ 372 (449)
T 3qgu_A 305 ------GEPVHADWNRVMTTC--FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGG----D 372 (449)
T ss_dssp ------SCBHHHHHHHHHHHS--CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEES----S
T ss_pred ------hhhHHHHHHHHhhcc--cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCC----C
Confidence 000000111111111 2235555555555555442223377889999999999999999999888765 3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+.++++.++ +.+..++++.|.+++||.+.+|.. +..++++||++....++.+...+.|.
T Consensus 373 ~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~ 434 (449)
T 3qgu_A 373 DAPYIWVGFP-GKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFK 434 (449)
T ss_dssp SSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH
T ss_pred CeeEEEEECC-CCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 4667888886 778889999998877999998844 33457899996554444444444443
No 97
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.97 E-value=4.2e-30 Score=233.03 Aligned_cols=326 Identities=13% Similarity=0.093 Sum_probs=227.8
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
..|..+++....+.+.++.+++++.+....+ ......+..+++++++++++|.+++ ++++++||++|+..++.+++.+
T Consensus 11 ~~p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~~g~t~a~~~~~~~~~~~ 89 (359)
T 1svv_A 11 AKPKPYSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIACSLALRP 89 (359)
T ss_dssp ----CEECSCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHHHHHHCCT
T ss_pred CCCeeEEecCCCcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCc-cEEEeCCchHHHHHHHHHHhCC
Confidence 3455566666666678899999999866532 2233457788999999999997654 5999999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC---CCCccEEEEEecCCCcccccc---HH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT---AHTIKAICIVHNETATGVTNN---LS 157 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~---~~~~~lv~~~~~~n~tG~~~~---~~ 157 (367)
||+|+++.++|++......++..|.+++.++.+ ++.+|+++++++++++. ..++++|+++++ ||||.++| ++
T Consensus 90 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~ 167 (359)
T 1svv_A 90 WEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELE 167 (359)
T ss_dssp TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHH
T ss_pred CCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHH
Confidence 999999999888764212367789999999986 77899999999998630 013799999998 79999998 88
Q ss_pred HHHHHHHhcCCCcEEEEeeee---ccCceeecccc----ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 158 KVRKLLDEYRHPALFLVDGVS---SICAIDFRMDE----WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~---~~~~~~~~~~~----~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
+|.++|++ +|+++|+|++| +.+..+.+... ...|+++.+++|+. ++.|+|++++++++++++....
T Consensus 168 ~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~~~~~~~~~~~---- 240 (359)
T 1svv_A 168 DISASCKE--HGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFGEALIILNDALKPNARHLI---- 240 (359)
T ss_dssp HHHHHHHH--HTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECSGGGCTTHHHHH----
T ss_pred HHHHHHHH--hCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEcccHHHHHHHHH----
Confidence 89999999 99999999998 44443332221 35789999999974 6788899999988765554210
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEE
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 310 (367)
...+. .+..+.....++. ..+.+.+++++++++.++++++.+.|+..|+++..+ ...++++
T Consensus 241 ----------~~~~~--~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~~~~~ 301 (359)
T 1svv_A 241 ----------KQRGA--LMAKGWLLGIQFE---VLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWP----SASNQLF 301 (359)
T ss_dssp ----------HHTTC--CCTTTHHHHHHHH---HHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC----CSSSEEC
T ss_pred ----------hcCCc--ccccchhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHhccCCeEEccC----CccceEE
Confidence 00111 1111221112222 233334467888999999999999994348887765 2344555
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
+.++ .++.++|.+++||.+.+.. +..++++|+++....+++ +...++|+
T Consensus 302 ~~~~-----~~~~~~l~~~~gi~v~~~~-~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 352 (359)
T 1svv_A 302 PILE-----NTMIAELNNDFDMYTVEPL-KDGTCIMRLCTSWATEEKECHRFVEVLK 352 (359)
T ss_dssp BEEE-----HHHHHHHTTTEECEEEEEE-TTTEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEcC-----HHHHHHHHHhcCEEEEecc-cCCCceEEEEccCcCCHHHHHHHHHHHH
Confidence 6553 5888999766699883211 223467999865545444 33344443
No 98
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.97 E-value=4.5e-29 Score=231.51 Aligned_cols=282 Identities=17% Similarity=0.101 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHhcCCC--------CceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEE
Q 017726 42 ALTKTLLEDIKKIFKTTS--------GTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVV 113 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~--------~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 113 (367)
+..+++.+.+++.+|.+. +++|++|+|+++++..++.+++.+||+|++..|.|++.. ..++..|.+++.+
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v 159 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTL--QSLHPLGCNIINV 159 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHH--HHHGGGTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH--HHHHHcCCEEEEe
Confidence 445555555555568764 357999999999999999999999999999999887743 5577889999999
Q ss_pred eCCCCCCCCHHHHHHHHhccC--------CCCccEEEE-EecCCCccccccHH---HHHHHHHhcCCCcEEEEeeeeccC
Q 017726 114 ESDWGEGAKLDVLASKLAADT--------AHTIKAICI-VHNETATGVTNNLS---KVRKLLDEYRHPALFLVDGVSSIC 181 (367)
Q Consensus 114 ~~~~~~~~d~e~l~~~i~~~~--------~~~~~lv~~-~~~~n~tG~~~~~~---~i~~~~~~~~~~~~vi~D~~~~~~ 181 (367)
+.+.+ .+|++++++++++.. .+++++|++ ++++||||.++|.+ +|.++|++ +|++||+|++|+.+
T Consensus 160 ~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~--~~~~li~De~~~~~ 236 (425)
T 2r2n_A 160 ASDES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARK--YDFLIIEDDPYYFL 236 (425)
T ss_dssp CEETT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHH--TTCEEEEECTTGGG
T ss_pred CcCCC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHH--cCCEEEEECCcccc
Confidence 98654 489999999997311 135788876 68999999999865 89999999 99999999998742
Q ss_pred ce----eec---cccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHH
Q 017726 182 AI----DFR---MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ 254 (367)
Q Consensus 182 ~~----~~~---~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (367)
.. ..+ +...+.++++.|+||+++...++|++++++++++++.... ... .++++..
T Consensus 237 ~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~----------------~~~--~~~~~~~ 298 (425)
T 2r2n_A 237 QFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHI----------------QVS--TLHPSTF 298 (425)
T ss_dssp BSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHH----------------HTT--TCSSCHH
T ss_pred cCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHH----------------HHh--cCCCCHH
Confidence 21 111 2223467999999999952223699999999888776321 011 2346666
Q ss_pred HHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHHHHc--CC-ccccCCCccCCCceEEEEcCCCCCHHH-HHHHH
Q 017726 255 LLYGLRAALDLIFE----EGLENVIERHRRLGKATRLAVEAW--GL-KNCTQKEEWFSDTVTAVIVPSHINSSE-IVRRA 326 (367)
Q Consensus 255 ~~~al~~al~~~~~----~g~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~L 326 (367)
...++..+++.+.+ ..+++++++++++++++.+.|++. |+ .+..+ ..+.+++++++...+..+ +.+.|
T Consensus 299 ~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p----~~g~~~~~~~~~~~~~~~~~~~~l 374 (425)
T 2r2n_A 299 NQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP----AAGMFLWIKVKGINDVKELIEEKA 374 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC----SBSSEEEEEETTCSCCHHHHHTHH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC----CceEEEEEEeCCCCCHHHHHHHHH
Confidence 66666667765422 226777888999999999999984 66 34444 355678888876556666 46667
Q ss_pred HhhCCeEEccCCCCC-----CCcEEEEeec
Q 017726 327 WQRYNLSLGLGLNKV-----AGKVFRIGHL 351 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~-----~~~~iRi~~~ 351 (367)
. ++||.+.+|..+. ..+++||++.
T Consensus 375 ~-~~gv~v~pg~~f~~~~~~~~~~iRis~~ 403 (425)
T 2r2n_A 375 V-KMGVLMLPGNAFYVDSSAPSPYLRASFS 403 (425)
T ss_dssp H-HTTEECEEGGGGSSSTTSCCCEEEEECS
T ss_pred H-HCCcEEechhhhcCCCCCCCCEEEEEeC
Confidence 5 5699999885432 2468999976
No 99
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=241.79 Aligned_cols=335 Identities=10% Similarity=-0.027 Sum_probs=233.0
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC---CC--CCcHHHHHHHHHHHHHHHhcCCCCc---------eEEecCChhHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED---YR--SPAVPALTKTLLEDIKKIFKTTSGT---------PFLIPTTGTGAW 73 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~~~~~~~---------~v~~~~ggt~al 73 (367)
++.+.+.|++...|..+.+.+....+. .+ ++.......++.+++++++|.+... ..++|+|||+|+
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an 158 (481)
T 4e1o_A 79 PHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSEST 158 (481)
T ss_dssp TTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHH
T ss_pred CCeeEeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHH
Confidence 466777888777776666655553322 11 3445667777888889999987532 578999999999
Q ss_pred HHHHHccC-------------------CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC
Q 017726 74 ESALTNTL-------------------SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT 134 (367)
Q Consensus 74 ~~~~~~~~-------------------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~ 134 (367)
..++.+.. .+++.|+++...|++. .+.+...|.+++.++.+.++.+|+++|+++|++..
T Consensus 159 ~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~ 236 (481)
T 4e1o_A 159 LIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSV--EKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDK 236 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHH--HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHH--HHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 88776532 1567888888888874 35567789999999998889999999999998642
Q ss_pred C--CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec---cccc---cceEEEecCCCcccCC
Q 017726 135 A--HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR---MDEW---GIDVALTGSQKALSLP 206 (367)
Q Consensus 135 ~--~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~---~~~~---~~d~~~~s~~K~~~g~ 206 (367)
. ..+.+|++++++|++|.+.|+++|.++|++ +|+++++|++++.+....+ .... .+|++++++|||+++|
T Consensus 237 ~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~--~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p 314 (481)
T 4e1o_A 237 QRGLVPVFVCATLGTTGVCAFDCLSELGPICAR--EGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH 314 (481)
T ss_dssp HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC
T ss_pred hCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH--cCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC
Confidence 1 126889999999999999999999999999 9999999999987643221 1111 3599999999999999
Q ss_pred CcceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Q 017726 207 TGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKA 284 (367)
Q Consensus 207 ~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~ 284 (367)
.|+|+++++++. +.+..... ..+...... ........+ ...+.. .....+++++..+..+|++++.++..+++++
T Consensus 315 ~g~g~l~~~~~~~l~~~~~~~-~~yl~~~~~-~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~ 391 (481)
T 4e1o_A 315 FDCTGFWVKDKYKLQQTFSVN-PIYLRHANS-GVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKY 391 (481)
T ss_dssp SSCEEEEESBHHHHHTTTCCC-CGGGCCTTT-TTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCHHHHHHHhcCC-chhccCccc-CCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999998887664 23222111 111110000 000000000 011111 2336788888888888899999999999999
Q ss_pred HHHHHHHc-CCccccCCCccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC
Q 017726 285 TRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354 (367)
Q Consensus 285 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~ 354 (367)
+.+.|++. |+++..+ ....+++|+++. +....++.++|.++..+.+.++.. ....++|+++.+..
T Consensus 392 l~~~L~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~ 458 (481)
T 4e1o_A 392 FESLVRNDPSFEIPAK----RHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATI-QDKLIIRFTVTSQF 458 (481)
T ss_dssp HHHHHHTCTTEECCSC----CCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEE-TTEEEEEEECCCTT
T ss_pred HHHHHhcCCCeEEecC----CceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEE-CCEEEEEEEeCCCC
Confidence 99999998 8888765 244578888832 223568899998773344444322 22356999977655
No 100
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=6.8e-30 Score=237.83 Aligned_cols=314 Identities=11% Similarity=0.037 Sum_probs=217.9
Q ss_pred cccccCCCCC-ChHHHHHHHccCCCCC-------------CCCcHHHHHHHHHHHHHHHhc--------CCCCceEEecC
Q 017726 10 NHLFVPGPVH-IPDQVIRAMNRNNEDY-------------RSPAVPALTKTLLEDIKKIFK--------TTSGTPFLIPT 67 (367)
Q Consensus 10 ~~~~~~~p~~-~~~~v~~a~~~~~~~~-------------~~~~~~~~~~~~~~~la~~~~--------~~~~~~v~~~~ 67 (367)
.+.+.-+..+ ..+.+.+++.+..... ..|.......++++.++++++ ++. +++++++
T Consensus 40 ~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~-~~v~~~~ 118 (435)
T 3piu_A 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP-NHLVLTA 118 (435)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG-GGEEEEE
T ss_pred eEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH-HHEEEcC
Confidence 3334433333 3566667776654311 112222345688999999888 334 4599999
Q ss_pred ChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHH-HhCCceEEEeCCCC--CCCCHHHHHHHHhccC--CCCccEEE
Q 017726 68 TGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQ-RLNFNVDVVESDWG--EGAKLDVLASKLAADT--AHTIKAIC 142 (367)
Q Consensus 68 ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~--~~~~~lv~ 142 (367)
||++|+..++.+++.+||.|++..|.|.+.. ..+. ..|.+++.++.+.+ +.+|++++++++++.. ..++++|+
T Consensus 119 gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 196 (435)
T 3piu_A 119 GATSANETFIFCLADPGEAVLIPTPYYPGFD--RDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVL 196 (435)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTTHH--HHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ChHHHHHHHHHHhcCCCCeEEECCCccccHH--HHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999999999887753 3344 67999999998753 4589999999998520 03689999
Q ss_pred EEecCCCccccccH---HHHHHHHHhcCCCcEEEEeeeeccCcee----eccc----c---------ccceEEEecCCCc
Q 017726 143 IVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID----FRMD----E---------WGIDVALTGSQKA 202 (367)
Q Consensus 143 ~~~~~n~tG~~~~~---~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~----~---------~~~d~~~~s~~K~ 202 (367)
+++|+||||.+++. ++|.++|++ +|+++|+|++|+.+... .+.. . .+.++++.|++|.
T Consensus 197 i~~p~nptG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~ 274 (435)
T 3piu_A 197 VTNPSNPLGTTMTRNELYLLLSFVED--KGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKD 274 (435)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSS
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecc
Confidence 99999999999875 678888999 99999999999763221 1110 1 2345889999999
Q ss_pred cc-CCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHH
Q 017726 203 LS-LPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERH 278 (367)
Q Consensus 203 ~~-g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~g~~~~~~~~ 278 (367)
++ ++.++|++++ ++++.+.+... .. .++.+.....++.+++.... +..+++.++++
T Consensus 275 ~g~~G~r~G~~~~~~~~~~~~~~~~------------------~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 334 (435)
T 3piu_A 275 LGLPGFRVGAIYSNDDMVVAAATKM------------------SS--FGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 334 (435)
T ss_dssp SCCGGGCEEEEEESCHHHHHHHHHH------------------GG--GSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCCCceeEEEEEeCCHHHHHHHHHH------------------hh--cCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 94 2233699998 45565555321 11 12244444444444444322 22356778889
Q ss_pred HHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC------CHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEee
Q 017726 279 RRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGH 350 (367)
Q Consensus 279 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~ 350 (367)
.++++++.+.|++.|+++..+ .++.++++.++... +..+++++|.+++||.+.+|.. +..++++||++
T Consensus 335 ~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~ 410 (435)
T 3piu_A 335 KQRQKKLVSGLQKSGISCLNG----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCF 410 (435)
T ss_dssp HHHHHHHHHHHHTTTCEECCC----CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEEC
T ss_pred HHHHHHHHHHHHhcCCcccCC----CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEe
Confidence 999999999999888887765 45567888885432 3457889998777999998754 34467899997
Q ss_pred cC
Q 017726 351 LG 352 (367)
Q Consensus 351 ~~ 352 (367)
..
T Consensus 411 ~~ 412 (435)
T 3piu_A 411 AN 412 (435)
T ss_dssp SS
T ss_pred eC
Confidence 44
No 101
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=2.8e-30 Score=237.62 Aligned_cols=303 Identities=11% Similarity=0.017 Sum_probs=206.5
Q ss_pred CChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHHccCCCC-CeE
Q 017726 19 HIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTLSPG-DRI 87 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~----~~~~-~~~~v~~~~ggt~al~~~~~~~~~~g-d~v 87 (367)
+.++.+.+++.+.... ...|.......++++.++++ +|.+ .+++|++|+|+++++..++.+++.+| |+|
T Consensus 48 ~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~v 127 (398)
T 3ele_A 48 PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEF 127 (398)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEE
T ss_pred CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEE
Confidence 3567777777764321 11121112223455555554 4543 33569999999999999999999999 999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLL 163 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~ 163 (367)
++..|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|
T Consensus 128 l~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 201 (398)
T 3ele_A 128 ITIAPYFPEYK--VFVNAAGARLVEVPADTEHFQIDFDALEERIN----AHTRGVIINSPNNPSGTVYSEETIKKLSDLL 201 (398)
T ss_dssp EEESSCCTHHH--HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCC----TTEEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred EEeCCCchhhH--HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhC----cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999887743 55778899999999875 46889999999987 46799999999999999998 45555777
Q ss_pred Hhc----CCCcEEEEeeeeccCce-----eeccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 164 DEY----RHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 164 ~~~----~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
++. ++|+++|+|++|+.+.. +......+.++++.|+||+++ ++.++|++++++++++...-
T Consensus 202 ~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~--------- 272 (398)
T 3ele_A 202 EKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAEL--------- 272 (398)
T ss_dssp HHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHH---------
T ss_pred HhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHH---------
Confidence 651 27999999999976332 222233457799999999995 33447999998875331100
Q ss_pred hHHHHHHhh-cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE
Q 017726 234 WKDYIKFYN-LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 234 ~~~~~~~~~-~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 312 (367)
........ ... ..+++.....++. ..+.... .++++.++++++.+.|+++|+.+..+ .++.++++.
T Consensus 273 -~~~~~~~~~~~~--~~~~~~~~~~a~~---~~l~~~~---~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~ 339 (398)
T 3ele_A 273 -YAAVCGAGRALG--YVCAPSLFQKMIV---KCQGATG---DINAYKENRDLLYEGLTRIGYHCFKP----DGAFYMFVK 339 (398)
T ss_dssp -HHHHHHHHHHTT--CCCSCHHHHHHHT---TCTTCCC---CHHHHHHHHHHHHHHHHHHTCCEECC----SBSSEEEEE
T ss_pred -HHHHHHHhhhcc--ccCCCHHHHHHHH---HHhcCHH---HHHHHHHHHHHHHHHHHHcCCeecCC----CeeEEEEEE
Confidence 00000000 011 2234443222222 2222221 35678889999999999988888776 456668888
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
++. .+..++.+.|. ++||.+.+|..+..++++||++.
T Consensus 340 ~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~ 376 (398)
T 3ele_A 340 ALE-DDSNAFCEKAK-EEDVLIVAADGFGCPGWVRISYC 376 (398)
T ss_dssp CSS-SCHHHHHHHHH-TTTEECEESGGGTCTTEEEEECC
T ss_pred cCC-CCHHHHHHHHH-HCCEEEeCccccCCCCeEEEEec
Confidence 853 47889999886 55999999876655679999975
No 102
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.97 E-value=1.6e-29 Score=227.22 Aligned_cols=292 Identities=12% Similarity=0.056 Sum_probs=217.6
Q ss_pred CCChHHHHHHHccCCC--C-CCCCcHHHHHHHHHHHHHHHhc---CCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 18 VHIPDQVIRAMNRNNE--D-YRSPAVPALTKTLLEDIKKIFK---TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~--~-~~~~~~~~~~~~~~~~la~~~~---~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.+.++.+++++.+... . +.++. ....++|+.++++++ .++ +++++++|+++++..++.++ ||+|+++
T Consensus 31 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~lr~~la~~~~~~~~~~-~~v~~~~G~~~al~~~~~~~---gd~Vl~~- 103 (335)
T 1uu1_A 31 FPFPEDLVDEVFRRLNSDALRIYYD--SPDEELIEKILSYLDTDFLSK-NNVSVGNGADEIIYVMMLMF---DRSVFFP- 103 (335)
T ss_dssp SCCCHHHHHHHHHTCCGGGGGSCCC--SSCHHHHHHHHHHHTCSSCCG-GGEEEESSHHHHHHHHHHHS---SEEEECS-
T ss_pred CCCCHHHHHHHHHHhhhhhhhcCCC--CchHHHHHHHHHHcCCCCCCH-HHEEEcCChHHHHHHHHHHh---CCcEEEC-
Confidence 4678999999988652 1 22222 136799999999999 664 45999999999999999887 8999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcE
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~ 171 (367)
|.|++.. ..++..|.+++.++.+.++.+|++++ + ++++|++++|+||||.++|.+++.++++. .| +
T Consensus 104 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l-----~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~--~~-~ 169 (335)
T 1uu1_A 104 PTYSCYR--IFAKAVGAKFLEVPLTKDLRIPEVNV-----G----EGDVVFIPNPNNPTGHVFEREEIERILKT--GA-F 169 (335)
T ss_dssp SSCHHHH--HHHHHHTCEEEECCCCTTSCCCCCCC-----C----TTEEEEEESSCTTTCCCCCHHHHHHHHHT--TC-E
T ss_pred CCcHHHH--HHHHHcCCeEEEeccCCCCCCCHHHc-----C----CCCEEEEeCCCCCCCCCCCHHHHHHHHHh--CC-E
Confidence 8877643 55677899999999877777888877 2 56999999999999999999999999998 68 8
Q ss_pred EEEeeeeccCce-e-ec-cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 172 FLVDGVSSICAI-D-FR-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 172 vi~D~~~~~~~~-~-~~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
+|+|++|+.+.. + .+ ....+.++++.|+||+++ ++| +|++++++++++++.... .
T Consensus 170 li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~-----------------~-- 229 (335)
T 1uu1_A 170 VALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFS-LAAQRVGYVVASEKFIDAYNRVR-----------------L-- 229 (335)
T ss_dssp EEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHS-----------------C--
T ss_pred EEEECcchhhcchhHHHHhhhCCCEEEEecchhhcC-CcccCeEEEEeCHHHHHHHHHhc-----------------C--
Confidence 999999974221 1 22 223457899999999984 445 699999999888776431 1
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
+++++...+.++.++++.. ..+++.+++++++++++.+.|++.|+.+.++ .+.+++++++. .+..++.+.|
T Consensus 230 -~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~-~~~~~~~~~l 300 (335)
T 1uu1_A 230 -PFNVSYVSQMFAKVALDHR--EIFEERTKFIVEERERMKSALREMGYRITDS-----RGNFVFVFMEK-EEKERLLEHL 300 (335)
T ss_dssp -TTCSCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----CSSEEEEECCT-HHHHHHHHHH
T ss_pred -CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCCcEEcCC-----CCeEEEEECCC-CCHHHHHHHH
Confidence 2356666556666666541 2367788899999999999999888766433 23467788753 4567899999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.++ ||.+.+ .++++||++ +..++.+...+.|++
T Consensus 301 ~~~-gi~v~~-----~~~~iRis~-~~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 301 RTK-NVAVRS-----FREGVRITI-GKREENDMILRELEV 333 (335)
T ss_dssp HHH-TEEEEE-----ETTEEEEEC-CCHHHHHHHHHHHHC
T ss_pred HHC-CEEEEE-----CCCeEEEEe-CCHHHHHHHHHHHHh
Confidence 765 999987 246899996 433445555555544
No 103
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.97 E-value=2e-29 Score=234.99 Aligned_cols=326 Identities=13% Similarity=0.080 Sum_probs=213.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCC--CC------c---H-HHHHHHHHHHHHHHhcCCCCc--eEEecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR--SP------A---V-PALTKTLLEDIKKIFKTTSGT--PFLIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~--~~------~---~-~~~~~~~~~~la~~~~~~~~~--~v~~~~ggt~al~ 74 (367)
+.++++|+|..++++|++++.....+.+ ++ . . ......+++++++++|.+.++ ..++++|||+|+.
T Consensus 55 ~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~ 134 (490)
T 2a7v_A 55 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL 134 (490)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred cCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHH
Confidence 4578899999999999999998654322 11 1 1 122335669999999998743 2466679999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHH------HHHHHhCCceE--EEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWI------DQQQRLNFNVD--VVESD-WGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g~~~~--~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.++++|||+|++.++.|.++... ..+...|..+. .++.+ .++.+|++++++++.+ +++|+|+++.
T Consensus 135 ~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~---~~~klIi~~~ 211 (490)
T 2a7v_A 135 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---FRPRLIIAGT 211 (490)
T ss_dssp HHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH---HCCSEEEECC
T ss_pred HHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhh---cCCcEEEEcC
Confidence 99999999999999999877553210 12233454433 34444 3578999999999975 3578998887
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHH
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE 220 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~ 220 (367)
++|| ...|+++|.++|++ +|+++++|++|..+.. +.++. ++|++++|+||++.||.| |+++++++++.
T Consensus 212 s~~~--~~~dl~~i~~ia~~--~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~ 284 (490)
T 2a7v_A 212 SAYA--RLIDYARMREVCDE--VKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKA 284 (490)
T ss_dssp SSCC--SCCCHHHHHHHHHH--TTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEE
T ss_pred CCCC--CcccHHHHHHHHHH--cCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhc
Confidence 7776 46799999999999 9999999999865422 22332 689999999999988887 99988765210
Q ss_pred HhccCCCCceeechHHHHHH-hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 221 ASKTAKSVRVFFDWKDYIKF-YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
...........++...... ...+. .++++...++++.+|+......+.++..++..+++++|.+.|++.|+++..+
T Consensus 285 -~~~~~~~~~~~~l~~~i~~~~~~g~--qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~ 361 (490)
T 2a7v_A 285 -VDPKTGREIPYTFEDRINFAVFPSL--QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSG 361 (490)
T ss_dssp -EETTTEEEEECCCHHHHHHHHTTTT--CCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred -ccccccchhhHHHHHHHHHHhcccC--CCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecC
Confidence 0000000000111111111 11111 2347777788888888877654467888899999999999999999988763
Q ss_pred CCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCeEEccCC-----CCCCCcEEEEeec
Q 017726 300 KEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGLGL-----NKVAGKVFRIGHL 351 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~g~-----~~~~~~~iRi~~~ 351 (367)
. ..++++++.+. .+.+..++.+.|. +.||.+..+. .+..++.||||..
T Consensus 362 ~---t~t~lv~vdl~~~g~~~~~~~~~L~-~~GI~v~~~~~p~d~~p~~~~~iRig~~ 415 (490)
T 2a7v_A 362 G---TDNHLVLVDLRPKGLDGARAERVLE-LVSITANKNTCPGDRSAITPGGLRLGAP 415 (490)
T ss_dssp S---CSSSEEEEECTTTTCCHHHHHHHHH-HTTEECEEECCTTCCCSSSCSEEEEESH
T ss_pred C---CCCeEEEEEeCCCCCCHHHHHHHHH-hCCeEEecCccCCCCCCCCCCceEeccc
Confidence 2 23457778874 3567888888885 5699997431 2344577999873
No 104
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.97 E-value=5.6e-29 Score=230.48 Aligned_cols=304 Identities=10% Similarity=-0.024 Sum_probs=210.3
Q ss_pred CCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcC-CCCc---eEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 16 GPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKT-TSGT---PFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~-~~~~---~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
++.++++.+.+++.+.... ...|.......++|+.+++++.. ...+ ++++|+||++|+..++.+++++||+|+++
T Consensus 53 ~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~ 132 (418)
T 3rq1_A 53 GNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTA 132 (418)
T ss_dssp SCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEEC
Confidence 3788899999998875431 11222223356788888886622 1123 69999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCcc-EEEEEec-CCCccccccHHHHH---HHHH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIK-AICIVHN-ETATGVTNNLSKVR---KLLD 164 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~-lv~~~~~-~n~tG~~~~~~~i~---~~~~ 164 (367)
.|.|.++. ..++..|.+++.++.+ .++.+|++++++++++...++++ ++++++| +||||.++|.+++. ++|+
T Consensus 133 ~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~ 210 (418)
T 3rq1_A 133 DWYWGAYR--VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLK 210 (418)
T ss_dssp SSCCTHHH--HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCCchhHH--HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99877653 5578899999999984 45689999999999852001345 7889999 99999999866555 5555
Q ss_pred ------hcCCCcEEEEeeeeccCceee----c----cccccc---eEEEecCCCcccCCCc--ceeeee---CHHHHHHh
Q 017726 165 ------EYRHPALFLVDGVSSICAIDF----R----MDEWGI---DVALTGSQKALSLPTG--MGIVCA---SPKALEAS 222 (367)
Q Consensus 165 ------~~~~~~~vi~D~~~~~~~~~~----~----~~~~~~---d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~ 222 (367)
+ +|+++|+|++|......- . ...... .+++.|+||.++ .+| +|++++ ++++++.+
T Consensus 211 ~~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~ 287 (418)
T 3rq1_A 211 DLVAIGR--NNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFT-MYGQRVGAMIGISDDEEIADEF 287 (418)
T ss_dssp HHHHTSS--CEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTT-CCSSCCEEEEEEESSHHHHHHH
T ss_pred HhhhccC--CCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCc-CcCCcceEEEEEeCCHHHHHHH
Confidence 6 999999999986433210 1 111112 378889999984 444 699998 89988877
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcCCccc
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWGLKNC 297 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~ 297 (367)
.... .....+. ...++.....++..++.... ...++++++++.++++++.+.|+++|+++.
T Consensus 288 ~~~~------------~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 353 (418)
T 3rq1_A 288 FEVN------------KSTSRAT--WSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPML 353 (418)
T ss_dssp HHHH------------HHHHHHH--TSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHH------------HHHHhhc--cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6421 0000011 11355554445554443221 111456678889999999999999888887
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
.+ .++.++++.++ +..++++.|. ++||.+.+| ++++||++.
T Consensus 354 ~~----~~~~~~~~~~~---~~~~~~~~l~-~~gi~v~~g-----~~~iRis~~ 394 (418)
T 3rq1_A 354 PY----RGGFFITIPTD---SANAICEELK-KEHIYVIAL-----ANGIRIAAC 394 (418)
T ss_dssp CC----CSSSEEEEECT---THHHHHHHHH-HTTEECEEC-----SSEEEEEGG
T ss_pred CC----CceEEEEcCCC---CHHHHHHHHH-hCCEEEecC-----CCCeEEEEe
Confidence 76 45556666653 6788998885 569999987 357999954
No 105
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=1.6e-29 Score=234.92 Aligned_cols=284 Identities=14% Similarity=0.133 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhc--------CCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 44 TKTLLEDIKKIFK--------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 44 ~~~~~~~la~~~~--------~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
..++++.++++++ .++ +++++++|+++++..++.+++.+||.|+++.|.|.+.. ..++...|++++.++.
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~-~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~-~~~~~~~g~~~~~v~~ 162 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDP-ERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFN-RDLRWRTGVQLIPIHC 162 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCT-TSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHH-HHTTTTTCCEEEEECC
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCh-hhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchH-HHHHHhcCCEEEEeec
Confidence 5688888888887 444 45999999999999999999999999999999887753 2233467999999998
Q ss_pred CC--CCCCCHHHHHHHHhcc--CCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee----
Q 017726 116 DW--GEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID---- 184 (367)
Q Consensus 116 ~~--~~~~d~e~l~~~i~~~--~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---- 184 (367)
+. ++.+|++++++++++. ..+++++|++++|+||||.++| +++|.++|++ +|+++|+|++|+.+...
T Consensus 163 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~ 240 (428)
T 1iay_A 163 ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ--HNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp CTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT--TTCEEEEECTTGGGCCSSSCC
T ss_pred CCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHH--CCeEEEEeccccccccCCCCc
Confidence 63 3468999999998752 1136899999999999999999 8889999999 99999999999863321
Q ss_pred ec---ccc------ccce--EEEecCCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 185 FR---MDE------WGID--VALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 185 ~~---~~~------~~~d--~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
.+ ... .+.| +++.|+||+++ .+| +|++++ ++++++.+.... . .++
T Consensus 241 ~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g-~~Glr~G~~~~~~~~~~~~~~~~~-----------------~---~~~ 299 (428)
T 1iay_A 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVNCARKMS-----------------S---FGL 299 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHHHHHHHH-----------------T---TSC
T ss_pred cCHHHhccccccccCCCCcEEEEecchhhcC-CCCceEEEEEeCCHHHHHHHHHHH-----------------h---ccc
Confidence 11 111 1145 88999999994 445 599998 677777665310 1 223
Q ss_pred CcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC------CHHHH
Q 017726 251 PSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEI 322 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l 322 (367)
.+.....++..+++... +..+++.++++.++++++.+.|+++|+++..+ ..+.++++++++.. +..++
T Consensus 300 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l 375 (428)
T 1iay_A 300 VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN----NAGLFCWMDLRPLLRESTFDSEMSL 375 (428)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC----SSSSEEEEECGGGCSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC----CeeEEEEEechhhcCCCchhHHHHH
Confidence 55544455555554321 12367788899999999999999988777654 35567788885321 34578
Q ss_pred HHHHHhhCCeEEccCCCCC--CCcEEEEeecCCCCHH
Q 017726 323 VRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNEV 357 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~~~~~ 357 (367)
.+.|.+++||.+.+|..+. .++++||++. ..+.+
T Consensus 376 ~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e 411 (428)
T 1iay_A 376 WRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDG 411 (428)
T ss_dssp HHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHH
T ss_pred HHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHH
Confidence 8999877799999875432 2468999976 34443
No 106
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.97 E-value=2.2e-29 Score=235.37 Aligned_cols=324 Identities=11% Similarity=0.066 Sum_probs=229.8
Q ss_pred CCcccccCCCCCChHHHHHHHccC-----CCC-C-----CCC--------cHHHHHHHHHHHHHHHhcCCCCceEEecCC
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRN-----NED-Y-----RSP--------AVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~-----~~~-~-----~~~--------~~~~~~~~~~~~la~~~~~~~~~~v~~~~g 68 (367)
.++|++..+.++.+..|++++.+. ... . ... ......+++++++++++|++.. +++|+|
T Consensus 80 ~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~~~t~g 157 (456)
T 2z67_A 80 TDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH--AIATPI 157 (456)
T ss_dssp GGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE--EEEESS
T ss_pred ccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC--EEEeCc
Confidence 457888888888888887776541 111 0 001 1445678899999999999863 899999
Q ss_pred hh-HHHHHHHHccCC--CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC---CCCCCCCHHHHHHHH-hccCCCCccEE
Q 017726 69 GT-GAWESALTNTLS--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWGEGAKLDVLASKL-AADTAHTIKAI 141 (367)
Q Consensus 69 gt-~al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~d~e~l~~~i-~~~~~~~~~lv 141 (367)
|| .++..++.++.. +++.|+++.++|.+. ...++..|++++.++. +.++.+|++++++++ ++....++.+|
T Consensus 158 ~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~--~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v 235 (456)
T 2z67_A 158 STGMSISLCLSAARKKYGSNVVIYPYASHKSP--IKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCV 235 (456)
T ss_dssp CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH--HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCcHHH--HHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEE
Confidence 99 566545544322 677788898877774 3567778999999887 566789999999999 43100256788
Q ss_pred EEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce---eeccccc--cceEEEecCCCcccCCCcceeeee-C
Q 017726 142 CIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEW--GIDVALTGSQKALSLPTGMGIVCA-S 215 (367)
Q Consensus 142 ~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~~~~~~~--~~d~~~~s~~K~~~g~~g~g~~~~-~ 215 (367)
+.++++|+||.+.|+++|.++|++ +|+++++|++|+.... +.+.... ++|++++|+||++.+|.|+|++++ +
T Consensus 236 v~~~~nn~tG~i~~l~~I~~la~~--~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~ 313 (456)
T 2z67_A 236 LSTLTFFPPRNSDDIVEIAKICEN--YDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTD 313 (456)
T ss_dssp EEESSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESC
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHH--cCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcC
Confidence 899999999999999999999999 9999999998875543 2332222 789999999999888999999999 5
Q ss_pred HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc---
Q 017726 216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--- 292 (367)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--- 292 (367)
+++++++.+... |. .+....+++.+++..+...|++++.++..++++++.+.|+++
T Consensus 314 ~~~~~~l~~~~~----------------g~-----~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 372 (456)
T 2z67_A 314 AEFIKEISLSYP----------------GR-----ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKK 372 (456)
T ss_dssp HHHHHHHHTTSC----------------SC-----BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCcCCC----------------CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777643211 11 111124667778888877889999999999999999999987
Q ss_pred -CCccccCCCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCe---EEc------cCCC--CCCCcEEEEeecCCCCH--H
Q 017726 293 -GLKNCTQKEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNL---SLG------LGLN--KVAGKVFRIGHLGHLNE--V 357 (367)
Q Consensus 293 -g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv---~v~------~g~~--~~~~~~iRi~~~~~~~~--~ 357 (367)
|+.+..+ . .+++|.+. ++ ...++.+.|.++ || -+. .|.. .....++|+++.-.++. .
T Consensus 373 ~g~~v~~~----~--~~v~~~~~~~~-~~~~l~~~L~~~-gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eei 444 (456)
T 2z67_A 373 TGGKFLDV----E--SPIASCISVNS-DPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDI 444 (456)
T ss_dssp SSCCBCCC----C--CSSEEEEECSS-CHHHHHHHHHHT-TEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHH
T ss_pred cCCEecCC----C--CeEEEEEeccc-HHHHHHHHHHHc-CCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHH
Confidence 8776665 2 34556661 12 146899989765 65 332 1211 22346899997655554 4
Q ss_pred HHHHhhhhc
Q 017726 358 MFNFQLLFQ 366 (367)
Q Consensus 358 ~~~~~~l~~ 366 (367)
|.+.+.|++
T Consensus 445 d~~l~~L~~ 453 (456)
T 2z67_A 445 VNSVSKLEK 453 (456)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555555554
No 107
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.97 E-value=2.2e-29 Score=232.14 Aligned_cols=312 Identities=15% Similarity=0.137 Sum_probs=223.2
Q ss_pred cccccCCCCCChHHHHHHHccCCC-CC-C---------C-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNE-DY-R---------S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~-~~-~---------~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.+.+.++..+.++.+++++.+... .. . + +......+++|+++++++|.+. ..+++++|++|+..++
T Consensus 25 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~--~~i~~~sGt~a~~~a~ 102 (405)
T 2vi8_A 25 KIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH--ANVQPHSGAQANMAVY 102 (405)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred ceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc--eEEEecCcHHHHHHHH
Confidence 345556666779999999998653 11 0 1 1122334457789999999874 3455566799999999
Q ss_pred HccCCCCCeEEEEeCCcchHHH-HHH--HHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLLW-IDQ--QQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~-~~~--~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
.+++.+||.|+++.+.|.+... ... ....+.+++.++.+ .++.+|++++++++++ .++++|+++ ++| .|..
T Consensus 103 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~-~~~-~~~~ 177 (405)
T 2vi8_A 103 FTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL---HRPKLIVAA-AAA-YPRI 177 (405)
T ss_dssp HHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEEC-CSS-CCSC
T ss_pred HHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHh---cCCeEEEEe-CCC-CCcc
Confidence 9989999999999997765421 000 11123467777765 4567899999999985 156888763 444 3667
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccc---cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW---GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
.++++|.++|++ +|+++|+|++|+.+....+.... ..|++++|+||+++|+.| |++++++++++++.....
T Consensus 178 ~~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~--- 251 (405)
T 2vi8_A 178 IDFAKFREIADE--VGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF--- 251 (405)
T ss_dssp CCHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT---
T ss_pred CCHHHHHHHHHH--cCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhc---
Confidence 789999999999 99999999999864332221111 578999999999987888 999999988877653211
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEE
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 310 (367)
.. ..++++...++++.++++.+.+.++++++++..++++++.+.|+++|+++..+. ..+.+++
T Consensus 252 ------------~~--~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~ 314 (405)
T 2vi8_A 252 ------------PG--IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG---TDNHLLL 314 (405)
T ss_dssp ------------TT--TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEE
T ss_pred ------------cc--ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCC---CCceEEE
Confidence 01 123466777778888888876656888999999999999999999888877642 1345777
Q ss_pred EEcCC-CCCHHHHHHHHHhhCCeEEccCCC------CCCCcEEEEeecC
Q 017726 311 VIVPS-HINSSEIVRRAWQRYNLSLGLGLN------KVAGKVFRIGHLG 352 (367)
Q Consensus 311 ~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~------~~~~~~iRi~~~~ 352 (367)
+.++. +.+..++.+.|.+ +||.+.+|.. +..++.+|+++..
T Consensus 315 ~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~iRis~~~ 362 (405)
T 2vi8_A 315 VDLRPQQLTGKTAEKVLDE-VGITVNKNTIPYDPESPFVTSGIRIGTAA 362 (405)
T ss_dssp EECGGGTCCHHHHHHHHHH-HTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred EEccCCCCCHHHHHHHHHH-cCceeccCcCccccCCCCCCCceEEeeee
Confidence 88753 4577889998865 5999998742 2234679999764
No 108
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=1.9e-29 Score=232.96 Aligned_cols=275 Identities=12% Similarity=0.107 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGA 121 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 121 (367)
....++++++++++|.+. .+++++|++++..++.+++.+||.|++..+.|.+.. ..++..|.+++.++. .
T Consensus 104 ~~~~~l~~~la~~~g~~~---~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~~~~-----~ 173 (409)
T 3kki_A 104 YDKPMIEKRLAKFTGFDE---CLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLW--EGARYANAQAHPFMH-----N 173 (409)
T ss_dssp TTSCHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHH--HHHHHTTCEEEEECT-----T
T ss_pred HHHHHHHHHHHHHhCCCe---EEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHH--HHHHHcCCeEEEecC-----C
Confidence 446689999999999764 355577789999999999999999999999877654 446677998887765 4
Q ss_pred CHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee---------eccccccc
Q 017726 122 KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGI 192 (367)
Q Consensus 122 d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~~ 192 (367)
|+++++++++++ ++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+... .+. ..++
T Consensus 174 d~~~le~~l~~~---~~~~vi~~~~~nptG~~~~l~~l~~la~~--~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~ 247 (409)
T 3kki_A 174 NCDHLRMLIQRH---GPGIIVVDSIYSTLGTIAPLAELVNISKE--FGCALLVDESHSLGTHGPNGAGLLAELGL-TREV 247 (409)
T ss_dssp CHHHHHHHHHHH---CSCEEEEESBCTTTCCBCCHHHHHHHHHH--HTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGC
T ss_pred CHHHHHHHHHhc---CCeEEEECCCCCCCCCcCCHHHHHHHHHH--cCCEEEEECCccccccCCCCCcchhhcCC-CCCC
Confidence 899999999863 46999999999999999999999999999 99999999999864331 111 1257
Q ss_pred eEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChH
Q 017726 193 DVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLE 272 (367)
Q Consensus 193 d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~ 272 (367)
|+++.|++|+++++ | |++++++++++.+..... .+..+ .+.+...++++.++++.+.+. +
T Consensus 248 di~~~s~sK~~~~~-g-g~v~~~~~~~~~~~~~~~------------~~~~~----~~~~~~~~aa~~aal~~~~~~--~ 307 (409)
T 3kki_A 248 HFMTASLAKTFAYR-A-GAIWCNNEVNRCVPFISY------------PAIFS----STLLPYEAAGLETTLEIIESA--D 307 (409)
T ss_dssp SEEEEESSSTTCSS-C-EEEEESSSGGGTHHHHCH------------HHHHS----BCCCHHHHHHHHHHHHHHHHC--H
T ss_pred CEEEeecchhhCCC-c-eEEEECHHHHHHHHHhCc------------Ccccc----CCCcHHHHHHHHHHHHHHhcC--H
Confidence 89999999999644 4 999999887665543110 00001 135566667777788877664 6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEe
Q 017726 273 NVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIG 349 (367)
Q Consensus 273 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~ 349 (367)
++++++.++++++.+.|+++|+++.+ .+.++++.+++..+..++.+.|.++ ||.+.++..+ ....++||+
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~ 380 (409)
T 3kki_A 308 NRRQHLDRMARKLRIGLSQLGLTIRS------ESQIIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLS 380 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCC------SSSEEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCC------CCCEEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEE
Confidence 78889999999999999998877653 3346777775444466799999876 9999875432 234679999
Q ss_pred ecCCCCHHHH
Q 017726 350 HLGHLNEVMF 359 (367)
Q Consensus 350 ~~~~~~~~~~ 359 (367)
+....+++++
T Consensus 381 ~~~~~t~e~i 390 (409)
T 3kki_A 381 LNSDVNDEQI 390 (409)
T ss_dssp CCTTCCHHHH
T ss_pred ccCCCCHHHH
Confidence 8766655443
No 109
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.97 E-value=2.6e-29 Score=232.38 Aligned_cols=308 Identities=15% Similarity=0.038 Sum_probs=213.2
Q ss_pred ccCCCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh-cCC---CCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 13 FVPGPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF-KTT---SGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 13 ~~~~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~-~~~---~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
..+++.++++.+.+++.+.... ...|.......++++.+++++ +.. ..+++++|+||++|+..++.+++++||.|
T Consensus 49 ~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~~~~gd~V 128 (413)
T 3t18_A 49 DDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAIFSYLDEGDPL 128 (413)
T ss_dssp CTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHCCSSCEE
T ss_pred CCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHHHHhcCCCCEE
Confidence 3445778899999998875421 112222234557777777765 322 22379999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCcc-EEEEEec-CCCccccccHHHHH---H
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIK-AICIVHN-ETATGVTNNLSKVR---K 161 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~-lv~~~~~-~n~tG~~~~~~~i~---~ 161 (367)
+++.|.|.++. ..++..|.+++.++. +.++.+|++++++++++...++++ ++++++| +||||.++|.+++. +
T Consensus 129 l~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~ 206 (413)
T 3t18_A 129 ICHDYYWAPYR--KICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVIT 206 (413)
T ss_dssp EEESSCCTHHH--HHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EECCCCcccHH--HHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 99999777643 557788999999998 445689999999999752001456 7888899 99999999866655 5
Q ss_pred HHH------hcCCCcEEEEeeeeccCceee----c----cccccc---eEEEecCCCcccCCCc--ceeeee---CHHHH
Q 017726 162 LLD------EYRHPALFLVDGVSSICAIDF----R----MDEWGI---DVALTGSQKALSLPTG--MGIVCA---SPKAL 219 (367)
Q Consensus 162 ~~~------~~~~~~~vi~D~~~~~~~~~~----~----~~~~~~---d~~~~s~~K~~~g~~g--~g~~~~---~~~~~ 219 (367)
+|+ + +|+++|+|++|......- . ...... .+++.|+||.++ ++| +|++++ +++++
T Consensus 207 ~~~~~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~riG~~~~~~~~~~~~ 283 (413)
T 3t18_A 207 FLKEKAEDKD--KKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHT-AYGLRSGAAVGISSSKEII 283 (413)
T ss_dssp HHHHHTTSTT--CEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEEESCHHHH
T ss_pred HHHHHhhccC--CcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCC-CcCcCcEEEEEecCCHHHH
Confidence 555 6 999999999975432210 1 011111 378889999995 445 699998 89988
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH----HhChHHHHHHHHHHHHHHHHHHHHcCCc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF----EEGLENVIERHRRLGKATRLAVEAWGLK 295 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~----~~g~~~~~~~~~~~~~~l~~~L~~~g~~ 295 (367)
+.+..... ....+. ...++...+.++..++.... ...++++++++.++++++.+.|++.|++
T Consensus 284 ~~~~~~~~------------~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 349 (413)
T 3t18_A 284 EEFEASLA------------HSARCN--WSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENKLT 349 (413)
T ss_dssp HHHHHHHH------------HHHHHH--TSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH------------Hhhhcc--ccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 87764210 000011 11355555555555544321 1125667888999999999999999888
Q ss_pred cccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
+..+ .++.++++.. .+..++.+.|. ++||.+.+| ++++||++..
T Consensus 350 ~~~~----~~~~~~~~~~---~~~~~~~~~l~-~~gv~v~~g-----~~~iRis~~~ 393 (413)
T 3t18_A 350 MIPY----FGGFFTFIPT---DKAFDIVKDLE-KENIFTIPS-----AKGIRVAICG 393 (413)
T ss_dssp CBCC----CSSSCEEEEC---SCHHHHHHHHH-HTTEECEEC-----SSEEEECTTT
T ss_pred ccCC----CceEEEEeCC---CCHHHHHHHHH-hCCEEEecC-----CCceEEEEee
Confidence 8776 4555566655 36788999885 569999987 4679999653
No 110
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.97 E-value=1.2e-29 Score=232.93 Aligned_cols=326 Identities=11% Similarity=0.054 Sum_probs=226.5
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeE
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRI 87 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~v 87 (367)
+...+..|++.+++++.+++.+.....+.+.......++++.++++++.+ .+++++|||+|+..++.++ +.+||+|
T Consensus 23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~~i~~~~gt~al~~~l~~~~~~~gd~v 99 (391)
T 3dr4_A 23 DLPRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVK---HAIACNNGTTALHLALVAMGIGPGDEV 99 (391)
T ss_dssp -----CCCCCCCCSSHHHHHHHHHHHTCCSSCSHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHTCCTTCEE
T ss_pred CCceeccCCCCCCHHHHHHHHHHHHcCCccCCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcCCCCcCEE
Confidence 44556667778888888888875443332223477889999999999976 3788899999999999988 8999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
+++.++|++.. ..++..|++++.++.+ .++.+|+++++++++ +++++|+ ++||||.+.|+++|.++|++
T Consensus 100 l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~---~~n~tG~~~~~~~i~~l~~~- 169 (391)
T 3dr4_A 100 IVPSLTYIASA--NSVTYCGATPVLVDNDPRTFNLDAAKLEALIT----PRTKAIM---PVHLYGQICDMDPILEVARR- 169 (391)
T ss_dssp EEESSSCTHHH--HHHHHTTCEEEEECBCTTTCSBCGGGSGGGCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH-
T ss_pred EECCCchHHHH--HHHHHCCCEEEEEecCccccCcCHHHHHHhcC----CCceEEE---EECCCCChhhHHHHHHHHHH-
Confidence 99999988864 4567789999999988 467889999999887 4668877 46799999999999999999
Q ss_pred CCCcEEEEeeeeccCceeecc--ccccceEEEec--CCCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHh
Q 017726 167 RHPALFLVDGVSSICAIDFRM--DEWGIDVALTG--SQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~--~~~~~d~~~~s--~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+++|+|++|+.+....+. ... .|+.++| ++|+++++. .|+++.+ +++.+++..........+. . ....
T Consensus 170 -~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~ 244 (391)
T 3dr4_A 170 -HNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGE-GGMITTNDDDLAAKMRLLRGQGMDPNR-R-YWFP 244 (391)
T ss_dssp -TTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBS-CEEEEESCHHHHHHHHHHHBTTCCTTS-T-TCCS
T ss_pred -cCCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCC-eEEEEECCHHHHHHHHHHHhcCCCCCC-c-cccc
Confidence 99999999999977654322 111 2555555 779997644 4777665 4465555432211100000 0 0000
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccC---CCccCCCceEEEEcCC--C
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ---KEEWFSDTVTAVIVPS--H 316 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~~~~~--~ 316 (367)
..+. .+.. ..+.+++......+++++.++.+++++++.+.|++.|+.+..+ ......+.++.+.+++ +
T Consensus 245 ~~g~--~~~~-----~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 317 (391)
T 3dr4_A 245 IVGF--NYRM-----TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLS 317 (391)
T ss_dssp SCCC--BCBC-----CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCS
T ss_pred cccc--ccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccc
Confidence 0010 1112 2345555555556678888999999999999999887766554 2222344456777765 6
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCC--------------------CCcEEEEeecCCCCHHHHH
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKV--------------------AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~--------------------~~~~iRi~~~~~~~~~~~~ 360 (367)
.+.+++.+.|.++ ||.++++..+. ....+|++++...+++|+.
T Consensus 318 ~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~ 380 (391)
T 3dr4_A 318 TTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADID 380 (391)
T ss_dssp SCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred hhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHH
Confidence 6788999999765 99999875321 1246999988877766544
No 111
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=3.5e-29 Score=230.62 Aligned_cols=304 Identities=16% Similarity=0.191 Sum_probs=219.0
Q ss_pred hHHHHHHHccCCCC-----C---CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEE
Q 017726 21 PDQVIRAMNRNNED-----Y---RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISF 90 (367)
Q Consensus 21 ~~~v~~a~~~~~~~-----~---~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~ 90 (367)
++.+.+++.+.... + ..+.......++++.+++++|.+ +++++++ |+.++..++..+ ..+||.|++.
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~s-G~~a~~~~~~~l~~~~~gd~Vl~~ 138 (401)
T 2bwn_A 62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKE--AALVFSS-AYNANDATLSTLRVLFPGLIIYSD 138 (401)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCS--EEEEESC-HHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCC--cEEEECC-cHHHHHHHHHHHhcCCCCCEEEEC
Confidence 44677777664221 1 12233467889999999999974 4577755 555777766554 3589999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCc
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA 170 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~ 170 (367)
.+.|++.. ..++..|++++.++.+ |++++++++++...+++++|++++++||||.+.|+++|.++|++ +|+
T Consensus 139 ~~~~~~~~--~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~ 209 (401)
T 2bwn_A 139 SLNHASMI--EGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE--FGA 209 (401)
T ss_dssp TTCCHHHH--HHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH--HTC
T ss_pred chhhHHHH--HHHHHcCCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHH--cCC
Confidence 99887754 3456789999999875 78999999875321367999999999999999999999999999 999
Q ss_pred EEEEeeeeccCcee-----e-cccc--ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhh
Q 017726 171 LFLVDGVSSICAID-----F-RMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 171 ~vi~D~~~~~~~~~-----~-~~~~--~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
++|+|++|+.+... + .... ...|+++.|++|+++ .+| |+++.++++++.+..... ...+.
T Consensus 210 ~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~----------~~~~~ 277 (401)
T 2bwn_A 210 LTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAASARMVDAVRSYAP----------GFIFS 277 (401)
T ss_dssp EEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEECHHHHHHHHHHCH----------HHHTS
T ss_pred EEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc-CCC-CEEecCHHHHHHHHHhCc----------Cceec
Confidence 99999999854321 1 0011 135899999999995 566 999999888776543110 00111
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
.++++ ..++++.++++.+.+.|++++++++.++++++.+.|+++|+++..+ .+ .++++.++++.+..++
T Consensus 278 -----~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~~~~~~~~~~~~~~~~ 346 (401)
T 2bwn_A 278 -----TSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH----GS-HIVPVVIGDPVHTKAV 346 (401)
T ss_dssp -----BCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC----SS-SCEEEECCCHHHHHHH
T ss_pred -----CCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC----CC-CeEEEEeCChHHHHHH
Confidence 22344 5667778888887776678899999999999999999888877764 33 3788888544556789
Q ss_pred HHHHHhhCCeEEccCCCCC-C-C-cEEEEeecCCCCHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKV-A-G-KVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~-~-~-~~iRi~~~~~~~~~~~ 359 (367)
.+.|.+++||.+.++..+. . + .++|+++....+++|+
T Consensus 347 ~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i 386 (401)
T 2bwn_A 347 SDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQI 386 (401)
T ss_dssp HHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHH
T ss_pred HHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHH
Confidence 9999755699998775432 1 2 5799998766655443
No 112
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.97 E-value=2.3e-29 Score=232.21 Aligned_cols=326 Identities=15% Similarity=0.096 Sum_probs=230.7
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC---CCCC------c--HH-HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED---YRSP------A--VP-ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~~~~------~--~~-~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+.+.+..|..++++.+.+++.+.... +.++ + .. .....+++.+++++|.+. ..+++++|++|+..+
T Consensus 24 ~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~--~~i~~~sGt~a~~~~ 101 (407)
T 2dkj_A 24 EGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW--ANVQPHSGSQANMAV 101 (407)
T ss_dssp TSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHH
T ss_pred cceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc--ceEEecchHHHHHHH
Confidence 45667777777799999999886532 1111 1 11 222235679999999874 235556678899999
Q ss_pred HHccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeC--C-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 77 LTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVES--D-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 77 ~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~--~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+.+++.+||+|+++.+.|++.. ....++..|.++..++. + .++.+|++++++++++ +++++|++++|+|| .
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~p~~~--~ 176 (407)
T 2dkj_A 102 YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE---HRPKVIVAGASAYP--R 176 (407)
T ss_dssp HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH---HCCSEEEECCSSCC--S
T ss_pred HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh---cCCeEEEEeccccC--C
Confidence 9988899999999999887652 01223334443344443 4 3567899999999974 25699999889987 6
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccc---cccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCC
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD---EWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSV 228 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~---~~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~ 228 (367)
..|+++|.++|++ +|+++|+|++|+.+....+.. ....|++++|+||+++|+.| |+++++ +++++++.....
T Consensus 177 ~~~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~- 252 (407)
T 2dkj_A 177 FWDFKAFREIADE--VGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIF- 252 (407)
T ss_dssp CCCHHHHHHHHHH--HTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHH--cCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhc-
Confidence 7899999999999 999999999998633221110 01379999999999988876 999999 788877654211
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.+ ..++++...++++.++++.+.+.++++++++..++++++.+.|++.|+++..+. ..+.+
T Consensus 253 --------------~~--~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~ 313 (407)
T 2dkj_A 253 --------------PG--IQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGG---TDNHL 313 (407)
T ss_dssp --------------TT--TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSE
T ss_pred --------------cc--ccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCC---CCceE
Confidence 01 123466666667778888766556888999999999999999999888776531 24457
Q ss_pred EEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEEEeec------CCCCHHHHHHhhhh
Q 017726 309 TAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFRIGHL------GHLNEVMFNFQLLF 365 (367)
Q Consensus 309 ~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~------~~~~~iRi~~~------~~~~~~~~~~~~l~ 365 (367)
+++.++. +.+..++.+.|. ++||.+.+|..+ ..++++|+++. ...++.+...++|.
T Consensus 314 ~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~ 382 (407)
T 2dkj_A 314 FLVDLRPKGLTGKEAEERLD-AVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELID 382 (407)
T ss_dssp EEEECGGGTCCHHHHHHHHH-HTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHH
T ss_pred EEEECcccCCCHHHHHHHHH-HcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHH
Confidence 7888853 457788999885 559999987532 23467999975 34445555555554
No 113
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.97 E-value=5.1e-29 Score=235.57 Aligned_cols=336 Identities=10% Similarity=0.030 Sum_probs=225.5
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC---CC---CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED---YR---SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-- 80 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~~---~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-- 80 (367)
..|+.....++.++.+++++.....+ +. ++.......++++++++++|.++.+.+++|+|||+|+..++.+.
T Consensus 101 ~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~ 180 (497)
T 2qma_A 101 PDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARD 180 (497)
T ss_dssp TTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHH
Confidence 44566666667888888877553221 11 22344556677899999999976456999999999999887762
Q ss_pred --C---------CC------CC-eEEEEeCCcchHHHHHHHHHhCC---ceEEEeCCCCCCCCHHHHHHHHhccCCC--C
Q 017726 81 --L---------SP------GD-RIISFLIGQFSLLWIDQQQRLNF---NVDVVESDWGEGAKLDVLASKLAADTAH--T 137 (367)
Q Consensus 81 --~---------~~------gd-~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~~~--~ 137 (367)
+ .+ |+ .|+++.+.|++.. ..++..|. +++.+|.+.++.+|+++|++++++.... +
T Consensus 181 ~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~--~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~ 258 (497)
T 2qma_A 181 WIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ--KSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLI 258 (497)
T ss_dssp HHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH--HHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCE
T ss_pred HHHHhhcccchhhcccccccCCeEEEECCCchHHHH--HHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCc
Confidence 2 12 45 6888877888753 45666665 8999999888899999999999863111 2
Q ss_pred ccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec----cccc-cceEEEecCCCcccCCCcceee
Q 017726 138 IKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR----MDEW-GIDVALTGSQKALSLPTGMGIV 212 (367)
Q Consensus 138 ~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~----~~~~-~~d~~~~s~~K~~~g~~g~g~~ 212 (367)
+.+|++++++|+||.+.|+++|.++|++ +|+++++|++|+.+..+.+ +... ++|++++|+||++++|.|+|++
T Consensus 259 ~~~vv~~~~~~~tG~~~~l~~I~~l~~~--~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l 336 (497)
T 2qma_A 259 PFAIVGTAGTTDHGAIDDLDFIADMAVK--HDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGAL 336 (497)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEE
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHH--cCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEEE
Confidence 4488999999999999999999999999 9999999999988766544 2222 6799999999999999899999
Q ss_pred eeCHHH-HHHhccCCCCceeechHHH--HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Q 017726 213 CASPKA-LEASKTAKSVRVFFDWKDY--IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV 289 (367)
Q Consensus 213 ~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 289 (367)
+++++. ++.+. ....+...... ....... ...+... ..++++++++.+...|++++.++..++++++.+.|
T Consensus 337 ~~~~~~~~~~~~---~~~~yl~~~~~~~~~~~~~~--~~~~r~~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L 410 (497)
T 2qma_A 337 LVNDKSNFKFLL---HHADYLNREHDELPNLVDKS--IATTKRF-DALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMI 410 (497)
T ss_dssp EESCGGGGGGGC---C----------------------CCSCCC-THHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHhc---CCchhcCCccccCCCccccC--CCCCCch-hHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 987654 33222 11111100000 0000000 0000111 12456677777777778899999999999999999
Q ss_pred HHc-CCccccCCCccCCCceEEEEcCCC-CC----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cCCCCHHHH
Q 017726 290 EAW-GLKNCTQKEEWFSDTVTAVIVPSH-IN----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNEVMF 359 (367)
Q Consensus 290 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~-~~~~~~~~~ 359 (367)
++. +++++.+ ....+++|++... .+ ..++.+.|.++ |+.+.++.......++|+++ ....+.+|+
T Consensus 411 ~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~~g~~~lRis~~~~~~t~edi 482 (497)
T 2qma_A 411 RTNDQFELLAE----PSLSTVLFRATHETADLDELNKALRLEALTR-GIAVLGETIVDGKTALKFTILNPCLTTSDF 482 (497)
T ss_dssp HTCTTEEECSC----CSSSEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred hhCCCeEEEcC----CCceEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEECCEEEEEEEecCCCCCHHHH
Confidence 997 8887653 1234777887432 12 23566777655 88776532222235799997 334444433
No 114
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.97 E-value=1.2e-28 Score=224.93 Aligned_cols=316 Identities=11% Similarity=0.043 Sum_probs=218.7
Q ss_pred CCCChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---CCCCCeEEEEeC
Q 017726 17 PVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LSPGDRIISFLI 92 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---~~~gd~vl~~~~ 92 (367)
.+++++.+++++.+..... .++ .....++++.+++++|.+ ++++++||++|+..++.++ +.+||+|+++.+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~ 82 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ--GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSEFSADRNEIITTPI 82 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS--SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHcCcccC--ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCC
Confidence 4567888899988865432 233 356789999999999976 4899999999999999998 889999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEE
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALF 172 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~v 172 (367)
.|++.. ..++..|++++.++.+.++.+|+++++++++ +++++|+++++ ||.+.|+++|.++|++ +|+++
T Consensus 83 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~---tG~~~~l~~i~~l~~~--~~~~l 151 (375)
T 2fnu_A 83 SFVATA--NMLLESGYTPVFAGIKNDGNIDELALEKLIN----ERTKAIVSVDY---AGKSVEVESVQKLCKK--HSLSF 151 (375)
T ss_dssp SCTHHH--HHHHHTTCEEEECCBCTTSSBCGGGSGGGCC----TTEEEEEEECG---GGCCCCHHHHHHHHHH--HTCEE
T ss_pred ccHhHH--HHHHHCCCEEEEeccCCCCCCCHHHHHhhcC----cCceEEEEeCC---cCCccCHHHHHHHHHH--cCCEE
Confidence 888864 3456789999999998777889999999887 46788888876 9999999999999999 99999
Q ss_pred EEeeeeccCceeec--ccccc-ceEEEecCCCcccCCCcceeeee-C-HHHHHHhccCCCCceeechHHHHHHhhcCCc-
Q 017726 173 LVDGVSSICAIDFR--MDEWG-IDVALTGSQKALSLPTGMGIVCA-S-PKALEASKTAKSVRVFFDWKDYIKFYNLGTF- 246 (367)
Q Consensus 173 i~D~~~~~~~~~~~--~~~~~-~d~~~~s~~K~~~g~~g~g~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 246 (367)
|+|++|+.+..+.. ....+ +++.++|+||++ ++ |+|++++ + +++++++......... +. ...+++.++.
T Consensus 152 i~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 226 (375)
T 2fnu_A 152 LSDSSHALGSEYQNKKVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLFRSHGML-KK--DFFEGEVKSIG 226 (375)
T ss_dssp EEECTTCTTCEETTEETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHHTBTTEE-ES--SSSCEEESSCC
T ss_pred EEECccccCCeECCeeccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHHHhcCCc-cc--ccccccccccc
Confidence 99999998765422 22222 334444455999 46 7888877 3 6677766543221110 00 0000111110
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC-CccCCCceEEEEcCC-CC-CHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK-EEWFSDTVTAVIVPS-HI-NSSEI 322 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~l 322 (367)
..+..+. +.+++......+++++.++.+++++++.+.|+++ |+.+..+. .......++++.++. +. +..++
T Consensus 227 ~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (375)
T 2fnu_A 227 HNFRLNE-----IQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLI 301 (375)
T ss_dssp CBCCCCH-----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHH
T ss_pred ccCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHH
Confidence 0111222 2333333344567888999999999999999997 77766542 111233455666642 23 67789
Q ss_pred HHHHHhhCCeEEccCCCCC---------------------CCcEEEEeecCCCCHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKV---------------------AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~---------------------~~~~iRi~~~~~~~~~~~ 359 (367)
.+.|.+ +||.++.++.+. ....+||++....+.+|+
T Consensus 302 ~~~L~~-~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i 358 (375)
T 2fnu_A 302 LESLHK-RGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESV 358 (375)
T ss_dssp HHHHHH-TTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred HHHHHH-CCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHH
Confidence 999965 499998543221 015799998776665443
No 115
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.97 E-value=1.1e-28 Score=228.41 Aligned_cols=310 Identities=11% Similarity=0.096 Sum_probs=215.8
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCC-----------CCcH-HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAV-PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.+.+.+++.++++.+.+++.+...... +... ......+++.+++++|.+.. ++++ ++|++|+..++
T Consensus 27 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~-~sGt~a~~~~~ 104 (417)
T 3n0l_A 27 GLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQP-NSGSQANQGVY 104 (417)
T ss_dssp SEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCC-SSHHHHHHHHH
T ss_pred CeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-ceEe-ccHHHHHHHHH
Confidence 455677777889999999988652211 0111 24444677899999998653 3555 55699999999
Q ss_pred HccCCCCCeEEEEeCCcchHHH-HHHHHH--hCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLLW-IDQQQR--LNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~-~~~~~~--~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
.+++.+||+|++..++|++... ...... .+..++.++.+.++.+|++++++++++ +++++|++++++| |.+.
T Consensus 105 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~--G~~~ 179 (417)
T 3n0l_A 105 AALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK---EKPKLIVCGASAY--ARVI 179 (417)
T ss_dssp HHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH---HCCSEEEECCSSC--CSCC
T ss_pred HHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh---cCCeEEEECCccc--CccC
Confidence 9999999999999998876531 112222 345566666776677999999999984 2569998888775 9999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCC
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSV 228 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~ 228 (367)
|+++|.++|++ +|+++|+|++|..+.. +.+.. +.|++++|+||+++|+.| |+++++ +++.+.+.....
T Consensus 180 ~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~- 253 (417)
T 3n0l_A 180 DFAKFREIADE--IGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIF- 253 (417)
T ss_dssp CHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHH--cCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhC-
Confidence 99999999999 9999999999765433 22222 479999999999987775 999998 787777653211
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.+. ..+++...++++.+++....+.++++.+++..++++++.+.|++.|+.+.... ....+
T Consensus 254 --------------~~~--~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~ 314 (417)
T 3n0l_A 254 --------------PGI--QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDG---TDNHL 314 (417)
T ss_dssp --------------TTT--CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSE
T ss_pred --------------Ccc--cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCC---CCceE
Confidence 111 23466666677777776655445788889999999999999999888776521 23345
Q ss_pred EEEEcC-CCCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEEEeecC
Q 017726 309 TAVIVP-SHINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFRIGHLG 352 (367)
Q Consensus 309 ~~~~~~-~~~~~~~l~~~L~~~~gv~v~~g~~~------~~~~~iRi~~~~ 352 (367)
+++.++ .+.+..++.+.|. ++||.+.++..+ .....+|+++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~ 364 (417)
T 3n0l_A 315 VLMSFLDREFSGKDADLALG-NAGITANKNTVPGEIRSPFITSGLRLGTPA 364 (417)
T ss_dssp EEEECTTSSSCHHHHHHHHH-HTTEECEECCCTTCCSCTTTCSEEEEECHH
T ss_pred EEEEcccCCCCHHHHHHHHH-HcCeEEeccccCCCCcccCCCCeeEecCHH
Confidence 667763 3457778888885 569999865322 234569998743
No 116
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.97 E-value=5.4e-29 Score=225.52 Aligned_cols=312 Identities=10% Similarity=0.036 Sum_probs=217.5
Q ss_pred CCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 16 GPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
.+.+.++.+++++.+.... ...+.......++++++++++| + +.++++++||++|+..++.+++.+||.|++..+.|
T Consensus 16 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~ 93 (356)
T 1v72_A 16 NIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASH 93 (356)
T ss_dssp GGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSH
T ss_pred CccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccc
Confidence 3456788899999887543 2233334678899999999999 4 33589999999999999999889999999998877
Q ss_pred chHHHHHHHHHh--CCceEEEeCCCCCCCCHHHHHH-HHhcc---CCCCccEEEEEecCCCccccc---cHHHHHHHHHh
Q 017726 95 FSLLWIDQQQRL--NFNVDVVESDWGEGAKLDVLAS-KLAAD---TAHTIKAICIVHNETATGVTN---NLSKVRKLLDE 165 (367)
Q Consensus 95 ~~~~~~~~~~~~--g~~~~~v~~~~~~~~d~e~l~~-~i~~~---~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~ 165 (367)
++......+... |.+++.++.+ ++.+|++++++ ++++. ..+++++|++++|+| ||.++ ++++|.++|++
T Consensus 94 ~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~ 171 (356)
T 1v72_A 94 INNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKS 171 (356)
T ss_dssp HHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHH
T ss_pred hhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHH
Confidence 664311114455 9999999875 47789999999 88741 002689999999876 99955 47889999999
Q ss_pred cCCCcEEEEeeeeccCc-----eeeccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 166 YRHPALFLVDGVSSICA-----IDFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~-----~~~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+|+++|+|++|..+. ...... ..+.|+++.|+||+ +++.|+|++++++++++++....
T Consensus 172 --~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~~~~~~~------------ 236 (356)
T 1v72_A 172 --SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLATEMSYRR------------ 236 (356)
T ss_dssp --TTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHHHHHHHH------------
T ss_pred --cCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHhhHHHHh------------
Confidence 999999999986431 111111 12578999999999 55776679988999887664210
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
...+. ...... .++..+++.+.+....+..++..++++++.+.|+++ |+++..+ ....+++++++
T Consensus 237 --~~~~~--~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~~~~~~~~~~--- 302 (356)
T 1v72_A 237 --KRAGH--LSSKMR---FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG----TEANILFCRLD--- 302 (356)
T ss_dssp --HHTTC--CCSSTH---HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC----CCSSEEEEEEC---
T ss_pred --hccCc--hhhhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccC----CCccEEEEEcC---
Confidence 01121 111122 233334444443335566778889999999999886 8877654 24456777774
Q ss_pred CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
.+++++|.+ +||.+.+|... ++++|+++....+.+ +...+.|+
T Consensus 303 --~~~~~~l~~-~gi~v~~g~~~--~~~iRi~~~~~~~~~~i~~~~~~l~ 347 (356)
T 1v72_A 303 --SAMIDALLK-AGFGFYHDRWG--PNVVRFVTSFATTAEDVDHLLNQVR 347 (356)
T ss_dssp --HHHHHHHHH-TTCBCBCSSSS--TTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHh-cCeEEeccccC--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 378899965 49999987522 678999966555544 33344443
No 117
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.97 E-value=2.4e-29 Score=237.28 Aligned_cols=329 Identities=13% Similarity=0.049 Sum_probs=223.9
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCC-C----CCcHHHHHHHHHHHHHHHhcCCCC--------ceEEecCChhHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY-R----SPAVPALTKTLLEDIKKIFKTTSG--------TPFLIPTTGTGAWES 75 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~-~----~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~ggt~al~~ 75 (367)
+.+.+.+++...+..+.+.+....+.. . ++.......++++++++++|.+.. ..+++|+|||+|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~ 154 (486)
T 1js3_A 75 YFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLV 154 (486)
T ss_dssp TBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHH
T ss_pred CceEeCCCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHH
Confidence 455566776666666777776653321 1 223445666788889999999742 358999999999998
Q ss_pred HHHccCCC---------CC--------e--EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC-
Q 017726 76 ALTNTLSP---------GD--------R--IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA- 135 (367)
Q Consensus 76 ~~~~~~~~---------gd--------~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~- 135 (367)
++.+...+ || . |+++.+.|++. ...++..|++++.++++.++.+|+++|+++|++++.
T Consensus 155 al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~--~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~ 232 (486)
T 1js3_A 155 ALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSV--ERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA 232 (486)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHH--HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHH--HHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhC
Confidence 88654211 32 3 67788888764 466788899999999988889999999999986430
Q ss_pred -CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec-cc-----cccceEEEecCCCcccCCCc
Q 017726 136 -HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-MD-----EWGIDVALTGSQKALSLPTG 208 (367)
Q Consensus 136 -~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-~~-----~~~~d~~~~s~~K~~~g~~g 208 (367)
.++.+|++++++|++|.+.|+++|.++|++ +|+++++|++|+.+....+ .. ..++|++++++||++++|.|
T Consensus 233 g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~--~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~ 310 (486)
T 1js3_A 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHE--EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD 310 (486)
T ss_dssp TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--TTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS
T ss_pred CCCceEEEEeCCCCCCCCCCCHHHHHHHHHH--cCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc
Confidence 113489999999999999999999999999 9999999999987654332 11 12689999999999988889
Q ss_pred ceeeeeCHHH--HHHhccCCCCceeechHHH-----HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Q 017726 209 MGIVCASPKA--LEASKTAKSVRVFFDWKDY-----IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281 (367)
Q Consensus 209 ~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~ 281 (367)
+|+++++++. .+.+.. ... +...... ......+ ...+.. ...+++++++..+...|++++.++..++
T Consensus 311 ~G~l~~~~~~~l~~~~~~--~~~-yl~~~~~~~~~~~~~~~~~--~~~~rr-~~~~~~~~al~~~g~~g~~~~~~~~~~~ 384 (486)
T 1js3_A 311 CSAMWVKRRTDLTGAFKL--DPV-YLKHSHQGSGLITDYRHWQ--LPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQL 384 (486)
T ss_dssp CEEEEESCHHHHHGGGC---------------CCSCCCGGGSS--SCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcC--Cch-hhCCCcccccCCCCccccC--CCCCCc-hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999997653 233321 011 1100000 0000000 001111 1236778888888778899999999999
Q ss_pred HHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCC--HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC
Q 017726 282 GKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHIN--SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 282 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
++++.+.|++. |+++..+ ....+++|+++ +.+ ..++.++|.++ |+.+..+.......++|+++...
T Consensus 385 a~~l~~~L~~~~~~~~~~~----~~~~~v~f~~~-~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~ 453 (486)
T 1js3_A 385 SHEFEAFVLQDPRFEVCAE----VTLGLVCFRLK-GSDGLNEALLERINSA-RKIHLVPCRLRGQFVLRFAICSR 453 (486)
T ss_dssp HHHHHHHHHHCTTEEECSC----CCSSEEEEEES-SCHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCT
T ss_pred HHHHHHHHhcCCCeEEeCC----CceeEEEEEec-ChHHHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEeCCC
Confidence 99999999998 8888763 12346778874 222 46788989766 65433221111235799997553
No 118
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.97 E-value=1.8e-29 Score=234.74 Aligned_cols=308 Identities=12% Similarity=0.080 Sum_probs=209.8
Q ss_pred CChHHHHHHHccCCC------CCCCCcHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 19 HIPDQVIRAMNRNNE------DYRSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~------~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
+.++.+++++.+... ...+|.......++++.+++++ +.++ ++|++++|+++++.. +.+++.+||.|+
T Consensus 69 ~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~-~~i~~t~G~~~al~~-l~~l~~~gd~Vl 146 (432)
T 3ei9_A 69 PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGD-DDVFVSDGAKCDISR-LQVMFGSNVTIA 146 (432)
T ss_dssp CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCG-GGEEEESCHHHHHHH-HHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCc-ceEEECCChHHHHHH-HHHHcCCCCEEE
Confidence 567777777766422 1123333344568888898887 5554 459999999999987 466788999999
Q ss_pred EEeCCcchHHHHHHHHHhC------------CceEEEeCCCCC--CCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~--~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
+..|.|++.. ..++..| .+++.++.+.+. ..|++. . +++++|++++|+||||.++
T Consensus 147 ~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~----~~~~~v~l~~p~NPtG~~~ 215 (432)
T 3ei9_A 147 VQDPSYPAYV--DSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V----GRTDIIFFCSPNNPTGAAA 215 (432)
T ss_dssp EEESCCTHHH--HHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C----CCCSEEEEESSCTTTCCCC
T ss_pred EeCCCCHHHH--HHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C----CCCCEEEEeCCCCCCCCCC
Confidence 9999988764 3344455 367888876543 334332 1 4789999999999999998
Q ss_pred c---HHHHHHHHHhcCCCcEEEEeeeeccCcee---eccc----cccceEEEecCCCccc-CCCcceeeeeCHHH-----
Q 017726 155 N---LSKVRKLLDEYRHPALFLVDGVSSICAID---FRMD----EWGIDVALTGSQKALS-LPTGMGIVCASPKA----- 218 (367)
Q Consensus 155 ~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~~----~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~----- 218 (367)
+ +++|.++|++ +|+++|+|++|+.+... ..+. ..+.++++.|+||+++ .+.++|++++++++
T Consensus 216 ~~~~l~~l~~la~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~ 293 (432)
T 3ei9_A 216 TREQLTQLVEFAKK--NGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDG 293 (432)
T ss_dssp CHHHHHHHHHHHHH--HTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTS
T ss_pred CHHHHHHHHHHHHH--cCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcch
Confidence 6 5567777998 99999999999854221 1111 1246799999999995 22337999998876
Q ss_pred ---HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCc
Q 017726 219 ---LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295 (367)
Q Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~ 295 (367)
++.+... .... .++++...+.+..+++.......++++++++.++++++.+.|+++|+.
T Consensus 294 ~~~~~~~~~~----------------~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 355 (432)
T 3ei9_A 294 FPVAKDFNRI----------------ICTC--FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYD 355 (432)
T ss_dssp CBHHHHHHHH----------------HHHS--CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH----------------hccc--cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCce
Confidence 3333311 1011 223555544555545432222236788899999999999999999888
Q ss_pred cccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+..+ ..+.++++.++ +.+..++++.|.+++||.+.+|..+ ...+++||++....++.+...+.|
T Consensus 356 ~~~~----~~~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl 421 (432)
T 3ei9_A 356 VYGG----KNAPYVWVHFP-NQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRF 421 (432)
T ss_dssp EEEC----SSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHH
T ss_pred ecCC----CcceEEEEECC-CCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 7765 24557888885 6678899999887779999988543 335789999755333333333333
No 119
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.97 E-value=2.4e-29 Score=233.52 Aligned_cols=316 Identities=9% Similarity=-0.016 Sum_probs=216.6
Q ss_pred CCcccccCCCCCCh-----HHHHHHH--ccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH--H
Q 017726 8 GKNHLFVPGPVHIP-----DQVIRAM--NRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW--E 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~-----~~v~~a~--~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al--~ 74 (367)
...+.|..|.+... +.+.+++ .+.... ...|.......++|+.++++++++++ +|++|+|+++++ .
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~ 111 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVE-QVLAGDASSLNIMFD 111 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGG-GEEECSSCHHHHHHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcc-eEEEeCCcHHHHHHH
Confidence 34567777655332 2345554 332221 12333334567999999999998765 599999999999 4
Q ss_pred HHHHccCC--C----------CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEE
Q 017726 75 SALTNTLS--P----------GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC 142 (367)
Q Consensus 75 ~~~~~~~~--~----------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~ 142 (367)
.++.+++. | ||+|++..|.|.++. ..++..|.+++.++.+.++ +|++++++++++ +++++|+
T Consensus 112 ~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~---~~~~~v~ 185 (427)
T 3ppl_A 112 VISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHF--SITERFGFEMISVPMNEDG-PDMDAVEELVKN---PQVKGMW 185 (427)
T ss_dssp HHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH--HHHHHTTCEEEEEEEETTE-ECHHHHHHHTTS---TTEEEEE
T ss_pred HHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHH--HHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhc---CCCeEEE
Confidence 77777665 6 899999999887753 5577899999999988765 899999999953 4779987
Q ss_pred EE-ecCCCccccccHH---HHHHHH-HhcCCCcEEEEeeeeccCce------eecc-------ccccceEEEecCCCccc
Q 017726 143 IV-HNETATGVTNNLS---KVRKLL-DEYRHPALFLVDGVSSICAI------DFRM-------DEWGIDVALTGSQKALS 204 (367)
Q Consensus 143 ~~-~~~n~tG~~~~~~---~i~~~~-~~~~~~~~vi~D~~~~~~~~------~~~~-------~~~~~d~~~~s~~K~~~ 204 (367)
++ +++||||.++|.+ +|.++| ++ +|++||+|++|+.... +.+. ...+.++++.|+||++.
T Consensus 186 ~~p~~~NPtG~~~~~~~~~~l~~~a~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 263 (427)
T 3ppl_A 186 VVPVFSNPTGFTVTEDVAKRLSAMETAA--PDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL 263 (427)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSS--TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSC
T ss_pred ECCCCCCCCCccCCHHHHHHHHHHHhhc--CCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccC
Confidence 65 8899999999877 777777 77 9999999999875221 1111 13357899999999865
Q ss_pred CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHH
Q 017726 205 LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLG 282 (367)
Q Consensus 205 g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~ 282 (367)
++.++|++++++++++.+..... .. .+.++.....++..++.... +..+++.++.+.+++
T Consensus 264 ~G~r~G~~~~~~~l~~~~~~~~~---------------~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (427)
T 3ppl_A 264 AGAGVSFFLTSAENRKWYTGHAG---------------IR---GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKF 325 (427)
T ss_dssp TTSSCEEEECCHHHHHHHHHHHH---------------HH---CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEEEcCHHHHHHHHHHhh---------------cc---cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Confidence 45668999999998887753210 00 12344444444444444311 112566677777788
Q ss_pred HHHHHHHHHc-----CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCC-----CCCcEEEEeec
Q 017726 283 KATRLAVEAW-----GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNK-----VAGKVFRIGHL 351 (367)
Q Consensus 283 ~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~~-----~~~~~iRi~~~ 351 (367)
+.+.+.|++. ++.+..+ .++.+++++++.. +..++.+.|. ++||.+.+ |... ...+++||++.
T Consensus 326 ~~l~~~L~~~l~~~~~~~~~~p----~~g~~~~~~~~~~-~~~~~~~~l~-~~gv~v~~~g~~~~~~~~~~~~~~Ris~~ 399 (427)
T 3ppl_A 326 NKVLEILDSRLAEYGVAQWTVP----AGGYFISLDVVPG-TASRVAELAK-EAGIALTGAGSSYPLRQDPENKNLRLAPS 399 (427)
T ss_dssp HHHHHHHHHHHGGGTCCEECCC----SBSSCEEEECSTT-CHHHHHHHHH-HTTEECCCTTTTSGGGCCTTSCEEEECCS
T ss_pred HHHHHHHHHhcCCCCceEEeCC----CccEEEEEECCcc-hHHHHHHHHH-HCCCEEecCcCcCCCCCCCCCCeEEEECC
Confidence 8888777662 3555554 3566788998654 6788888886 55999998 4221 23578999974
Q ss_pred CCCCHH
Q 017726 352 GHLNEV 357 (367)
Q Consensus 352 ~~~~~~ 357 (367)
. .+.+
T Consensus 400 ~-~~~~ 404 (427)
T 3ppl_A 400 L-PPVE 404 (427)
T ss_dssp S-SCHH
T ss_pred C-CCHH
Confidence 4 3433
No 120
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.97 E-value=1.5e-28 Score=221.90 Aligned_cols=305 Identities=12% Similarity=0.086 Sum_probs=204.1
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL- 98 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~- 98 (367)
+++.+.+++.+.......+.......++++.+++++|.+ .+++++||++++.+++.+++.+||+|+++.+.|++..
T Consensus 16 p~~~~~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~ 92 (347)
T 1jg8_A 16 PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKE---AALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYE 92 (347)
T ss_dssp CCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSS
T ss_pred CCHHHHHHHhcCCCCCcccCCChHHHHHHHHHHHHhCCc---eEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcc
Confidence 457788888765332222223356789999999999975 3678889999999989888899999999999876542
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC--CCCccEEEEEecCCCc-cccccH---HHHHHHHHhcCCCcEE
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETAT-GVTNNL---SKVRKLLDEYRHPALF 172 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~t-G~~~~~---~~i~~~~~~~~~~~~v 172 (367)
....++..|++++.+ .++++.+|++++++++++.. .+++++|++++|+||| |.++|. ++|.++|++ +|+++
T Consensus 93 ~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~--~~~~l 169 (347)
T 1jg8_A 93 VGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKE--HGINV 169 (347)
T ss_dssp TTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH--HTCEE
T ss_pred ccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHH--CCCEE
Confidence 123466789999888 55566789999999997420 0268999999999999 999874 678899999 99999
Q ss_pred EEeeeeccCce---eeccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 173 LVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 173 i~D~~~~~~~~---~~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
++|++|..+.. ..+.. ..+.|.++.|+||+++++.| ++++.++++++++.... ..+ .++
T Consensus 170 i~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~~~~~~~~~~~~------------~~~-~~~-- 233 (347)
T 1jg8_A 170 HIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG-SVVVGDRDFIERARKAR------------KML-GGG-- 233 (347)
T ss_dssp EEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHH------------HHH-TCC--
T ss_pred EeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCce-EEEEcCHHHHHHHHHHH------------HHc-CCc--
Confidence 99998754221 11111 12578888899999976543 46778888877654321 001 111
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC-CCCHHHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRA 326 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L 326 (367)
. ..+....++...+++. . .+.+ ++..++++++.+.|+++|+.+..+. ..+.+++++++. +.+..+++++|
T Consensus 234 ~-~~~~~~~~~~~~~l~~---~-~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 304 (347)
T 1jg8_A 234 M-RQAGVLAAAGIIALTK---M-VDRL-KEDHENARFLALKLKEIGYSVNPED---VKTNMVILRTDNLKVNAHGFIEAL 304 (347)
T ss_dssp C-SSTHHHHHHHHHHHHH---S-STTH-HHHHHHHHHHHHHHHHHTCBCCGGG---CCSSEEEEECTTSSSCHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHHH---H-HHHH-HHHHHHHHHHHHHHHhcCceeccCC---CcceEEEEEcccccCCHHHHHHHH
Confidence 0 1121111112223322 1 2222 2334577888999988776643211 233467888864 56788999999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.++ ||.+.++. .+++|+++....+++++.
T Consensus 305 ~~~-gi~v~~~~----~~~iRl~~~~~~~~e~i~ 333 (347)
T 1jg8_A 305 RNS-GVLANAVS----DTEIRLVTHKDVSRNDIE 333 (347)
T ss_dssp HHH-TEECEEEE----TTEEEEECCTTSCHHHHH
T ss_pred HHC-CCEEecCC----CCeEEEEeCCCCCHHHHH
Confidence 755 99998642 357999976655555443
No 121
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.97 E-value=2.1e-29 Score=236.22 Aligned_cols=334 Identities=13% Similarity=0.032 Sum_probs=228.1
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC---CC--CCcHHHHHHHHHHHHHHHhcCCCC--------ceEEecCChhHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED---YR--SPAVPALTKTLLEDIKKIFKTTSG--------TPFLIPTTGTGAWE 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~ggt~al~ 74 (367)
++.+.+.+++...+..+.+.+....+. .+ ++.......++.+++++++|.+.. ...++|+|||+++.
T Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl 153 (475)
T 3k40_A 74 PKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTL 153 (475)
T ss_dssp TTBCCSSCCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHH
T ss_pred cCceeeCCCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHH
Confidence 355666677776666655555543322 12 334556677788889999999853 15899999999998
Q ss_pred HHHHccC-------------------CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC
Q 017726 75 SALTNTL-------------------SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA 135 (367)
Q Consensus 75 ~~~~~~~-------------------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~ 135 (367)
.++.+.. .+++.|+++...|++. .+.+...|++++.++++.++ +|+++|+++|++...
T Consensus 154 ~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~--~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~ 230 (475)
T 3k40_A 154 VALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSV--ERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVA 230 (475)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHH--HHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHH--HHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHH
Confidence 8776531 1345788888888874 35677789999999998888 999999999986421
Q ss_pred --CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec-----ccc-ccceEEEecCCCcccCCC
Q 017726 136 --HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-----MDE-WGIDVALTGSQKALSLPT 207 (367)
Q Consensus 136 --~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-----~~~-~~~d~~~~s~~K~~~g~~ 207 (367)
..+.+|++++++|++|.+.|+++|.++|++ +|+++++|++++.+....+ ... ..+|++++++|||+++|.
T Consensus 231 ~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~--~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~ 308 (475)
T 3k40_A 231 EGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK--HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF 308 (475)
T ss_dssp TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--TTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS
T ss_pred CCCccEEEEEEecCCCCcCcCCHHHHHHHHHH--hCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC
Confidence 126789999999999999999999999999 9999999999987643221 111 146999999999999999
Q ss_pred cceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Q 017726 208 GMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT 285 (367)
Q Consensus 208 g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l 285 (367)
|+|+++++++. +.+..... ..++.............+ ...+.+ ...+.++++++.+..+|+++++++..++++++
T Consensus 309 g~g~l~~~~~~~l~~~~~~~--~~yl~~~~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l 385 (475)
T 3k40_A 309 DCSAMWLKDPSWVVNAFNVD--PLYLKHDMQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQF 385 (475)
T ss_dssp SCEEEEESSGGGC-----------------------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcCC--ccccCCCcCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999887653 22111111 111100000000000000 011111 23467888999988889999999999999999
Q ss_pred HHHHHHc-CCccccCCCccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC
Q 017726 286 RLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354 (367)
Q Consensus 286 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~ 354 (367)
.+.|++. |+++..+ ....+++|+++. +....++.++|.++.++.+.++.. ....++|+++.+..
T Consensus 386 ~~~L~~~~g~~l~~~----~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~ 451 (475)
T 3k40_A 386 GDLCVADSRFELAAE----INMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKI-KDVYFLRMAICSRF 451 (475)
T ss_dssp HHHHHHSTTEEESSC----CBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEE-TTEEEEEEECCCTT
T ss_pred HHHHhcCCCEEEecC----CceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEE-CCEEEEEEEeCCCC
Confidence 9999998 8988775 234578888742 223568999998774445444332 22457999977654
No 122
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.97 E-value=1.1e-28 Score=229.85 Aligned_cols=325 Identities=13% Similarity=0.059 Sum_probs=222.5
Q ss_pred ccccCCC--CCChHHHHHHHcc--CCCC--CC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc-
Q 017726 11 HLFVPGP--VHIPDQVIRAMNR--NNED--YR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN- 79 (367)
Q Consensus 11 ~~~~~~p--~~~~~~v~~a~~~--~~~~--~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~- 79 (367)
+++..|+ ...|+.+.+.+.+ .... .. +.+..+...++++++++++|.+.. ++++++|++.+++.+..+
T Consensus 67 ~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~-~i~~~~g~taa~ea~~~a~ 145 (438)
T 1wyu_A 67 AFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLAL 145 (438)
T ss_dssp CCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHHH
T ss_pred cccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCcc-ceEEeCcHHHHHHHHHHHH
Confidence 4555666 4567766444422 1111 11 233557788999999999999754 478889999443333322
Q ss_pred cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH
Q 017726 80 TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
.+.+||+|+++.+.|+++. +...++..|++++.++. .++.+|+++ ++ +++++|++++| ||||.+.|++
T Consensus 146 ~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~----~~t~~v~i~~p-n~tG~~~~l~ 215 (438)
T 1wyu_A 146 RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG----EEVGAVVVQNP-NFLGALEDLG 215 (438)
T ss_dssp HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC----TTEEEEEEESS-CTTSBCCCHH
T ss_pred hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC----CCeEEEEEECC-CCCeEEecHH
Confidence 2478999999999988874 44556778999999997 456778777 44 57899999999 9999999999
Q ss_pred HHHHHHHhcCCCcEEEEeee-eccCceeeccccccceEEEecCCC-----cccCCCcceeeeeCHHHHHHhccCCC----
Q 017726 158 KVRKLLDEYRHPALFLVDGV-SSICAIDFRMDEWGIDVALTGSQK-----ALSLPTGMGIVCASPKALEASKTAKS---- 227 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~-~~~~~~~~~~~~~~~d~~~~s~~K-----~~~g~~g~g~~~~~~~~~~~~~~~~~---- 227 (367)
+|.++|++ +|+++++|.. ++++....+ ...++|++++|++| |++|| |+|++++++++++++.....
T Consensus 216 ~i~~la~~--~g~~vivd~d~~a~g~~~~~-~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~ 291 (438)
T 1wyu_A 216 PFAEAAHG--AGALFVAVADPLSLGVLKPP-GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETV 291 (438)
T ss_dssp HHHHHHHH--TTCEEEEECCTTGGGTBCCH-HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEE
T ss_pred HHHHHHHH--cCCEEEEEechhhccCcCCC-ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceecccc
Confidence 99999999 9999997755 445544333 34578999999776 67667 88999999998776643211
Q ss_pred -----CceeechH--HHHHHhhcCCccCCCCcHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 017726 228 -----VRVFFDWK--DYIKFYNLGTFWPYTPSIQLLYGLRAA--LDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC 297 (367)
Q Consensus 228 -----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~al~~a--l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 297 (367)
..+.++++ ....+++.++ ++......++++.++ +..+.++|++++.++..++++++.+.|+++ |+++.
T Consensus 292 ~~~~~~~~~~~l~~~~~~~r~~~~t--~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 369 (438)
T 1wyu_A 292 DVEGRRGFILTLQAREQYIRRAKAK--SNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPF 369 (438)
T ss_dssp BTTSCEEEEECCGGGSHHHHGGGSS--CCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEEC
T ss_pred ccCCCcceeeeccccccccchhccc--CCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEC
Confidence 11122221 2223444444 111111334555555 666777788999999999999999999998 98887
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE--ccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL--GLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v--~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.+ ....+.+..+ .+..+++++|.++ ||.+ .++... .++++||++....+.+|+
T Consensus 370 ~~~~---~~~~~~~~~~--~~~~~~~~~L~~~-gi~v~~~~~~~~-~~~~lRis~~~~~t~edi 426 (438)
T 1wyu_A 370 TPKP---FFNEFALALP--KDPEAVRRALAER-GFHGATPVPREY-GENLALFAATELHEEEDL 426 (438)
T ss_dssp SCSS---BCSEEEEECS--SCHHHHHHHHHHT-TCCCCEECCTTS-CSSEEEEECCTTCCHHHH
T ss_pred CCCC---eEEEEEEeCC--CCHHHHHHHHHHC-Cceecccccccc-CCCeEEEEecccCCHHHH
Confidence 6521 1123445542 4678999999865 9998 444322 267899998866665544
No 123
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.97 E-value=8.2e-29 Score=229.73 Aligned_cols=311 Identities=13% Similarity=0.041 Sum_probs=214.2
Q ss_pred cccccCCCCC-----ChHHHHHHHc--cCCCC---CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHH--HH
Q 017726 10 NHLFVPGPVH-----IPDQVIRAMN--RNNED---YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE--SA 76 (367)
Q Consensus 10 ~~~~~~~p~~-----~~~~v~~a~~--~~~~~---~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~--~~ 76 (367)
.+.+..|-+. +++.+.+++. +.... ...| .......++|+.++++++++++ +|++|+|+++++. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAE-NVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGG-GEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChh-hEEEeCCcHHHHHHHHH
Confidence 4556655444 5667888775 33221 1233 4445567999999999998765 5999999999997 78
Q ss_pred HHccCC--C---------CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEE-E
Q 017726 77 LTNTLS--P---------GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICI-V 144 (367)
Q Consensus 77 ~~~~~~--~---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~-~ 144 (367)
+.+++. + ||+|++..|.|.++. ..++..|.+++.++.+.++ +|++++++++++. +++++|++ +
T Consensus 106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~--~~~~~v~~~~ 180 (423)
T 3ez1_A 106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHF--LLLQTLGFELLTVDMQSDG-PDVDAVERLAGTD--PSVKGILFVP 180 (423)
T ss_dssp HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHH--HHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC--TTEEEEEECS
T ss_pred HHHHhccCCCccccccCCCCEEEEcCCCcHHHH--HHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC--CCceEEEECC
Confidence 887776 7 599999999887653 5577789999999987664 8999999999532 47899975 4
Q ss_pred ecCCCccccccHH---HHHHHH-HhcCCCcEEEEeeeeccCcee-------ecc-------ccccceEEEecCCCcccCC
Q 017726 145 HNETATGVTNNLS---KVRKLL-DEYRHPALFLVDGVSSICAID-------FRM-------DEWGIDVALTGSQKALSLP 206 (367)
Q Consensus 145 ~~~n~tG~~~~~~---~i~~~~-~~~~~~~~vi~D~~~~~~~~~-------~~~-------~~~~~d~~~~s~~K~~~g~ 206 (367)
+++||||.++|.+ +|.++| ++ +|+++|+|++|+..... .+. ...+.++++.|+||++.++
T Consensus 181 ~~~NPtG~~~~~~~l~~l~~~a~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G 258 (423)
T 3ez1_A 181 TYSNPGGETISLEKARRLAGLQAAA--PDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG 258 (423)
T ss_dssp SSCTTTCCCCCHHHHHHHHTCCCSS--TTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHhc--cCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC
Confidence 8899999999877 677777 77 99999999998832111 111 1335789999999975555
Q ss_pred CcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH-HH--HhChHHHHHHHHHHHH
Q 017726 207 TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-IF--EEGLENVIERHRRLGK 283 (367)
Q Consensus 207 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-~~--~~g~~~~~~~~~~~~~ 283 (367)
.++|+++.++++++.+.... ... .++++.....++..++.. .. ...+++.++.+.++++
T Consensus 259 ~r~G~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (423)
T 3ez1_A 259 AGLGFVASSEDNIRWLSKYL---------------GAQ---SIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFR 320 (423)
T ss_dssp SSCEEEEECHHHHHHHHHHH---------------HHS---CSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCHHHHHHHHHHH---------------hhh---ccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 66899999999888776421 001 223455444444444443 11 1125556666667777
Q ss_pred HHHHHHHH----cC--CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCC-----CCCcEEEEeec
Q 017726 284 ATRLAVEA----WG--LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNK-----VAGKVFRIGHL 351 (367)
Q Consensus 284 ~l~~~L~~----~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~~-----~~~~~iRi~~~ 351 (367)
.+.+.|.+ .| +.+..+ ..+.++++.++.. +.+++.+.|. ++||.+.+ |... ...+++||++.
T Consensus 321 ~l~~~l~~~l~~~~~~~~~~~p----~~g~~~~~~~~~~-~~~~~~~~l~-~~gv~v~~~g~~~~~~~~~~~~~iRis~~ 394 (423)
T 3ez1_A 321 AVDEVLRAELGEGGEYATWTLP----KGGYFISLDTAEP-VADRVVKLAE-AAGVSLTPAGATYPAGQDPHNRNLRLAPT 394 (423)
T ss_dssp HHHHHHHHHHTTTTSSEEECCC----SBSSCEEEEESSS-CHHHHHHHHH-HTTEECCCTTTTSSTTCCSSSCEEEECCS
T ss_pred HHHHHHHHhcCcCCCceEEeCC----CccEEEEEECCCC-cHHHHHHHHH-HCCcEEecCcccccCCCCCCCCeEEEEcC
Confidence 77777765 33 444444 3556788888654 6778888775 55999998 5322 23578999974
Q ss_pred C
Q 017726 352 G 352 (367)
Q Consensus 352 ~ 352 (367)
.
T Consensus 395 ~ 395 (423)
T 3ez1_A 395 R 395 (423)
T ss_dssp S
T ss_pred C
Confidence 3
No 124
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.97 E-value=4.8e-28 Score=227.42 Aligned_cols=328 Identities=13% Similarity=0.094 Sum_probs=224.1
Q ss_pred CChHHHHHHHccCCCC--CC-----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc----CCCCC--
Q 017726 19 HIPDQVIRAMNRNNED--YR-----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT----LSPGD-- 85 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~-----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~----~~~gd-- 85 (367)
...+++.+++.+.... .. .++..+...++++++++++|.+. .+++++||++++..++.++ ..+||
T Consensus 77 ~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~ 154 (474)
T 1wyu_B 77 KYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRGEGR 154 (474)
T ss_dssp CCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3345566666654221 11 22345678899999999999875 4678899999998755443 35777
Q ss_pred ---eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc-ccHHHHHH
Q 017726 86 ---RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT-NNLSKVRK 161 (367)
Q Consensus 86 ---~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~-~~~~~i~~ 161 (367)
+|+++.+.|.++. ..++..|++++.++.+.++.+|+++++++++ +++++|++++| ||+|.+ .|+++|.+
T Consensus 155 ~r~~Vlv~~~~h~~~~--~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~----~~t~~v~~~~p-n~~G~~~~~l~~i~~ 227 (474)
T 1wyu_B 155 TRRVVLVPDSAHGSNP--ATASMAGYQVREIPSGPEGEVDLEALKRELG----PHVAALMLTNP-NTLGLFERRILEISR 227 (474)
T ss_dssp TCCEEEEETTSCTHHH--HHHHHTTCEEEEECBCTTSSBCHHHHHHHCS----TTEEEEEECSS-CTTSCCCTTHHHHHH
T ss_pred CCCEEEEeCCcChhhH--HHHHHCCCEEEEecCCCCCCcCHHHHHHhhC----CCceEEEEECC-CCCcccCCCHHHHHH
Confidence 9999998877654 4477889999999998888999999999997 46799999987 689998 69999999
Q ss_pred HHHhcCCCcEEEEeeeeccCce-eeccccccceEEEecCCCcccCCC-----cceeeeeCHHHHHHhccCC----CCcee
Q 017726 162 LLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSLPT-----GMGIVCASPKALEASKTAK----SVRVF 231 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~-~~~~~~~~~d~~~~s~~K~~~g~~-----g~g~~~~~~~~~~~~~~~~----~~~~~ 231 (367)
+|++ +|+++|+|++|+.+.. ..+....++|++++|+||++++|. |+|++++++++++++.... ...+.
T Consensus 228 l~~~--~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~ 305 (474)
T 1wyu_B 228 LCKE--AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFY 305 (474)
T ss_dssp HHHH--HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEE
T ss_pred HHHH--cCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeE
Confidence 9999 9999999999975543 233344578999999999998763 5899999999877664210 00111
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 311 (367)
+++. ... ..+.+..++.+...+.+...++..+..++++++.++..++++++.+.|++.|+++..+... .. .+++
T Consensus 306 ~~~~-~~~--~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--~~-~~~~ 379 (474)
T 1wyu_B 306 LDFD-RPK--SIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPS--MH-EFVA 379 (474)
T ss_dssp EECC-CTT--CCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSC--CS-CEEE
T ss_pred eccc-Ccc--cCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCc--ce-EEEE
Confidence 1110 000 0011112235554444444455544456688889999999999999999988776433211 11 1344
Q ss_pred EcCCCCCHHHHHHHHHhhCCeEEccC-CCCCCCcEEEEeecCCCCHH--HHHHhhh
Q 017726 312 IVPSHINSSEIVRRAWQRYNLSLGLG-LNKVAGKVFRIGHLGHLNEV--MFNFQLL 364 (367)
Q Consensus 312 ~~~~~~~~~~l~~~L~~~~gv~v~~g-~~~~~~~~iRi~~~~~~~~~--~~~~~~l 364 (367)
.++.+.+..++.++|.++ ||.+... +....++++||++....+.+ |.+.++|
T Consensus 380 ~~~~~~~~~~l~~~L~~~-Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L 434 (474)
T 1wyu_B 380 QPPEGFRALDLAKGLLEL-GFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAM 434 (474)
T ss_dssp BCSTTCCHHHHHHHHHHT-TCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHC-CccccccccccccCCEEEEEeecCCCHHHHHHHHHHH
Confidence 554466788999999866 9875321 21123567999987655544 4444444
No 125
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.97 E-value=1.1e-28 Score=233.79 Aligned_cols=303 Identities=11% Similarity=0.085 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHHccCC--------CC-----C-eEEEEeCCcchHHHHHHHH
Q 017726 40 VPALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLS--------PG-----D-RIISFLIGQFSLLWIDQQQ 104 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~-~~~v~~~~ggt~al~~~~~~~~~--------~g-----d-~vl~~~~~~~~~~~~~~~~ 104 (367)
......++++++++++|.+. ..++++++|||+|+..++.++.. +| + .|+++.+.|++.. ..++
T Consensus 130 ~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~--~~~~ 207 (504)
T 2okj_A 130 FVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK--KAGA 207 (504)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH--HHHH
Confidence 34556778899999999983 34699999999999998876532 45 6 6888878888753 4456
Q ss_pred HhCC---ceEEEeCCCCCCCCHHHHHHHHhccC--CCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 105 RLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 105 ~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
..|. +++.+|.+.++.+|+++|++++++.. ..+|++|++++++|+||.+.|+++|.++|++ +|+++++|++++
T Consensus 208 ~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~--~g~~lhvD~a~~ 285 (504)
T 2okj_A 208 ALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK--YNLWLHVDAAWG 285 (504)
T ss_dssp HTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHH--HTCEEEEEETTG
T ss_pred HcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH--cCCEEEEehhhh
Confidence 6666 89999998889999999999998521 0257999999999999999999999999999 999999999998
Q ss_pred cCcee-----ecccc-ccceEEEecCCCcccCCCcceeeeeCHH-HHHHhccCCCCcee---------echHHHHHHhhc
Q 017726 180 ICAID-----FRMDE-WGIDVALTGSQKALSLPTGMGIVCASPK-ALEASKTAKSVRVF---------FDWKDYIKFYNL 243 (367)
Q Consensus 180 ~~~~~-----~~~~~-~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 243 (367)
.+... ..+.. .++|++++++||++++|.|+|+++++++ +++........... .++.++ .++.
T Consensus 286 ~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~ 363 (504)
T 2okj_A 286 GGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDK--AIQC 363 (504)
T ss_dssp GGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGG--SSCS
T ss_pred hHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccC--CCCC
Confidence 77653 22222 2689999999999988888999999874 55542211111000 001000 0111
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc-CCCC----
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-PSHI---- 317 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~---- 317 (367)
+. . ... ..++++++.+...|++++.++..++++++.+.|++. |++++.+.+. ..+ +++|+. +...
T Consensus 364 ~r--r--~~~---l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p-~~~-~v~f~~~~~~~~~~~ 434 (504)
T 2okj_A 364 GR--H--VDI---FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP-EHT-NVCFWYIPQSLRGVP 434 (504)
T ss_dssp SC--B--CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCC-SSS-CEEEEECCGGGSSCC
T ss_pred CC--C--ccH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-CeE-EEEEEEeCccccccc
Confidence 11 0 122 355666777777788999999999999999999997 8888763111 233 455654 3211
Q ss_pred -----------CHHHHHHHHHhhCCe-EEccCCCCCCCcEEEEeec-CCCCHHH
Q 017726 318 -----------NSSEIVRRAWQRYNL-SLGLGLNKVAGKVFRIGHL-GHLNEVM 358 (367)
Q Consensus 318 -----------~~~~l~~~L~~~~gv-~v~~g~~~~~~~~iRi~~~-~~~~~~~ 358 (367)
...++.+.|.++ |+ .+.++.......++|+++. ...+.+|
T Consensus 435 ~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~ed 487 (504)
T 2okj_A 435 DSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMVISNPAATQSD 487 (504)
T ss_dssp CCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEECCCCTTCCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEECCceEEEEEEeCCCCCCHHH
Confidence 034688888776 64 4432211111247999986 3444443
No 126
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.97 E-value=1.5e-28 Score=233.25 Aligned_cols=309 Identities=13% Similarity=0.081 Sum_probs=210.4
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------C-CCC------eEEEEeCCcchHHHHHHHH
Q 017726 39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------S-PGD------RIISFLIGQFSLLWIDQQQ 104 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~-~gd------~vl~~~~~~~~~~~~~~~~ 104 (367)
...+...++++++++++|.+. .++++++|||+|+..++.+.. . +|+ .|+++...|++.. ..++
T Consensus 145 ~~~~le~~~~~~la~l~g~~~-~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~--~~~~ 221 (515)
T 2jis_A 145 VFVLMEEEVLRKLRALVGWSS-GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ--KGAA 221 (515)
T ss_dssp HHHHHHHHHHHHHHHHHTCSS-CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH--HHHH
Confidence 345677889999999999984 459999999999988876642 2 465 7888888888754 4566
Q ss_pred HhCC---ceEEEeCCCCCCCCHHHHHHHHhccC--CCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 105 RLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 105 ~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
..|. +++.+|.+.++.+|+++|++++++.. ..+|++|++++++|++|.+.|+++|.++|++ +|+++++|++++
T Consensus 222 ~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~--~g~~l~vD~a~~ 299 (515)
T 2jis_A 222 FLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQR--HGLWLHVDAAWG 299 (515)
T ss_dssp HTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEEETTG
T ss_pred HcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH--cCCeEEEehhhh
Confidence 6777 89999998888999999999998521 0257999999999999999999999999999 999999999999
Q ss_pred cCceeec-----cccc-cceEEEecCCCcccCCCcceeeeeCHH--HHHHhccCCCCceeechHH-HHHHhhcCCcc-CC
Q 017726 180 ICAIDFR-----MDEW-GIDVALTGSQKALSLPTGMGIVCASPK--ALEASKTAKSVRVFFDWKD-YIKFYNLGTFW-PY 249 (367)
Q Consensus 180 ~~~~~~~-----~~~~-~~d~~~~s~~K~~~g~~g~g~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 249 (367)
.+....+ +... ++|++++++|||+++|.|+|+++++++ ++++...... .+...... ....++.+++. ..
T Consensus 300 ~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~~ 378 (515)
T 2jis_A 300 GSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQA-SYLFQQDKFYDVALDTGDKVVQC 378 (515)
T ss_dssp GGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC----------CCSCGGGCCGGGCSCS
T ss_pred hHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCc-hhccCCcccccccCCCCCCCCCC
Confidence 8776544 3333 789999999999988999999999877 6655321111 11100000 00001111100 00
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc-CCCC----CHH---
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-PSHI----NSS--- 320 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~----~~~--- 320 (367)
+.. ....+++++++.+...|++++.++..++++++.+.|++. |++++.+. .. ..++|+. |.+. +..
T Consensus 379 ~rr-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---~~-~~v~f~~~p~~~~~~~~~~~~~ 453 (515)
T 2jis_A 379 GRR-VDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP---EF-VNVCFWFVPPSLRGKQESPDYH 453 (515)
T ss_dssp SCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC---SS-SEEEEEECCGGGTTCTTSTTHH
T ss_pred CCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC---Ce-eEEEEEEeCccccccccchhHH
Confidence 000 012456666777777889999999999999999999997 88887641 22 3455654 3211 111
Q ss_pred --------HHHHHHHhhCCeEEcc-CCCCCCCcEEEEee-cCCCCHHHH
Q 017726 321 --------EIVRRAWQRYNLSLGL-GLNKVAGKVFRIGH-LGHLNEVMF 359 (367)
Q Consensus 321 --------~l~~~L~~~~gv~v~~-g~~~~~~~~iRi~~-~~~~~~~~~ 359 (367)
.+.+.|.++ |+.+.. ........++|+++ ....+.+|+
T Consensus 454 ~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~edi 501 (515)
T 2jis_A 454 ERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCADM 501 (515)
T ss_dssp HHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHHHH
Confidence 255666655 754422 11111235799998 445554443
No 127
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=1.1e-28 Score=227.18 Aligned_cols=309 Identities=15% Similarity=0.096 Sum_probs=210.4
Q ss_pred CChHHHHHHHccCCC------CCCCCcHHHHHHHHHHHHHHH--hc-CCCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 19 HIPDQVIRAMNRNNE------DYRSPAVPALTKTLLEDIKKI--FK-TTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~------~~~~~~~~~~~~~~~~~la~~--~~-~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
+.++.+.+++.+... ...+|.......++|+.++++ .| .++ ++|++++|+++++..++. ++.+||+|++
T Consensus 46 ~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~-~~v~~~~G~~~al~~~~~-~~~~gd~Vl~ 123 (400)
T 3asa_A 46 PLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDA-KEIFISDGAKVDLFRLLS-FFGPNQTVAI 123 (400)
T ss_dssp CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCG-GGEEEESCHHHHHHHHHH-HHCSSCEEEE
T ss_pred CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCH-HHEEEccChHHHHHHHHH-HcCCCCEEEE
Confidence 567777777766321 112232224567899999999 46 444 459999999999998654 4579999999
Q ss_pred EeCCcchHHHHHHHHHhCCc-eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 90 FLIGQFSLLWIDQQQRLNFN-VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~-~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
..|.|++.. ..++..|.+ ++.++.+.++.++.+ +++ + +++++|++++|+||||.++| +++|.++|++
T Consensus 124 ~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 194 (400)
T 3asa_A 124 QDPSYPAYL--DIARLTGAKEIIALPCLQENAFFPE-FPE-D-----THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIE 194 (400)
T ss_dssp EESCCHHHH--HHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHH--HHHHHcCCcceEecccchhcCcccC-hhh-c-----cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 999887753 456778998 999998754333221 211 1 36799999999999999997 5568888999
Q ss_pred cCCCcEEEEeeeeccCc----eeecccc----ccceEEEecCCCcccCCCc--ceeeeeCHHH-------HHHhccCCCC
Q 017726 166 YRHPALFLVDGVSSICA----IDFRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKA-------LEASKTAKSV 228 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~----~~~~~~~----~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~-------~~~~~~~~~~ 228 (367)
+|+++|+|++|+... .+.++.. .+.++++.|++|+++ ++| +|++++++++ ++++..
T Consensus 195 --~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~GlriG~~~~~~~~~~~~~~~~~~~~~---- 267 (400)
T 3asa_A 195 --HEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG-FAGIRLGWTVIPQELTYADGHFVIQDWE---- 267 (400)
T ss_dssp --TTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT-TTTCCCEEEECCTTCBCTTSCBHHHHHH----
T ss_pred --cCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC-CcchheeEEeeChhhccchhhhHHHHHH----
Confidence 999999999998322 1222222 135689999999984 444 6999998876 333321
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.....+ .++.+.....++..+++. ..++++++++.++++++.+.|++.|+++..+ ..+.+
T Consensus 268 -----------~~~~~~--~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~ 327 (400)
T 3asa_A 268 -----------RFLSTT--FNGASIPAQEAGVAGLSI---LPQLEAIHYYRENSDLLRKALLATGFEVFGG----EHAPY 327 (400)
T ss_dssp -----------HHHHHH--CCCCCHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHTTCEEEEC----SSSSE
T ss_pred -----------HHhccC--ccCCChHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHCCCeeeCC----CCceE
Confidence 000010 123555544444444443 2467888899999999999999988877664 24557
Q ss_pred EEEE-cCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 309 TAVI-VPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 309 ~~~~-~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++++ ++++.+..++.+.|.+++||.+.+|..+ ..++++||++....++.+...+.|.
T Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~ 387 (400)
T 3asa_A 328 LWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQ 387 (400)
T ss_dssp EEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHH
Confidence 8888 7666677789888877779999987543 2356799995444444444444443
No 128
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=9.9e-30 Score=237.37 Aligned_cols=284 Identities=11% Similarity=0.000 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHh------cCCCCceEEecCChhHHHHHHHHccCCCCC--------------eEEEE-eCCcchHHHH
Q 017726 42 ALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGAWESALTNTLSPGD--------------RIISF-LIGQFSLLWI 100 (367)
Q Consensus 42 ~~~~~~~~~la~~~------~~~~~~~v~~~~ggt~al~~~~~~~~~~gd--------------~vl~~-~~~~~~~~~~ 100 (367)
....++|+.+++++ ++++ ++|++|+|+++|+.+++.+++.+|| +|+++ .|.|+++...
T Consensus 83 ~g~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 83 QGDSAFIDALVGFFNRHYDWNLTS-ENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCH-HHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhc
Confidence 44567888888887 3344 4699999999999999999988887 78775 6766665310
Q ss_pred ----HHHHHhCCceEEEeCCC-C----CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 101 ----DQQQRLNFNVDVVESDW-G----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 101 ----~~~~~~g~~~~~v~~~~-~----~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
......|..+..++.+. + +.+|++++++++.+.. +++++|++++|+||||.++| +++|.++|++ +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~--~ 238 (444)
T 3if2_A 162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKE-GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKR--Y 238 (444)
T ss_dssp CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHT-TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--T
T ss_pred ccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcC-CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHH--C
Confidence 02334577888888764 2 3689999998843211 57899999999999999998 7788889999 9
Q ss_pred CcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++|+|++|+.+... ......+.++++.|+||++.++.++|+++.++++++.+..... .
T Consensus 239 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~-------------~-- 303 (444)
T 3if2_A 239 DIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNA-------------V-- 303 (444)
T ss_dssp TCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHH-------------H--
T ss_pred CCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHH-------------h--
Confidence 9999999999742211 1112236789999999974333557999999998887753210 0
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhC-hHH-HHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCceEEEEcCC-C
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEG-LEN-VIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPS-H 316 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g-~~~-~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~-~ 316 (367)
. .++++.....++..++....... ..+ +++++.++++.+.+.|++. ++.+..+ ..+.++++.++. +
T Consensus 304 ~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~g~~~~~~~~~~~ 376 (444)
T 3if2_A 304 V---NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKP----EGAIFLWLWFKDLP 376 (444)
T ss_dssp H---HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECC----CBSSEEEEEETTCS
T ss_pred c---cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecC----CccEEEEEEcCCCC
Confidence 0 11233333333333333211111 222 5667788888888888773 3445444 345678888865 5
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCC----------CcEEEEeecC
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVA----------GKVFRIGHLG 352 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~----------~~~iRi~~~~ 352 (367)
.+..++.+.|. ++||.+.+|..+.. .+++||++..
T Consensus 377 ~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~ 421 (444)
T 3if2_A 377 ISTLDLYERLK-AKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA 421 (444)
T ss_dssp SCHHHHHHHHH-HTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS
T ss_pred CCHHHHHHHHH-HCCeEEecchhhcCCCCCcccccCCCeEEEEEeC
Confidence 78889999995 55999998854322 2579999766
No 129
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.96 E-value=2.5e-28 Score=230.63 Aligned_cols=318 Identities=11% Similarity=-0.006 Sum_probs=214.2
Q ss_pred ChHHHHHHHccCCC-----CCCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccC-CCCCeEE
Q 017726 20 IPDQVIRAMNRNNE-----DYRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL-SPGDRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~-----~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~-~~gd~vl 88 (367)
.|..+++++.+... ....|.......++|+.+++++ |.+ .+++|++|+|+++++..++.+++ .+||.|+
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl 186 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGIL 186 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEE
Confidence 45555555443221 1223333344456666666665 432 33569999999999999999987 7999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccC--CCCccEEEEEecCCCcccccc---HHHHHH
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNN---LSKVRK 161 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~---~~~i~~ 161 (367)
++.|.|++.. ..++..|.+++.++++++ +.+|++++++++++.. ..++++|++++|+||||.+++ +++|.+
T Consensus 187 v~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~ 264 (500)
T 3tcm_A 187 VPIPQYPLYS--ASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVK 264 (500)
T ss_dssp EEESCCTHHH--HHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EeCCCcHhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHH
Confidence 9999887643 557788999999998764 5889999999998521 026799999999999999987 455666
Q ss_pred HHHhcCCCcEEEEeeeeccCcee-----ecc----------ccccceEEEecCCCcccCCCc--ceeeee---CHHHHHH
Q 017726 162 LLDEYRHPALFLVDGVSSICAID-----FRM----------DEWGIDVALTGSQKALSLPTG--MGIVCA---SPKALEA 221 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~-----~~~----------~~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~ 221 (367)
+|++ +|+++++|++|..+... .++ ......+++.|+||.+.|.+| +|++++ +++++++
T Consensus 265 la~~--~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 342 (500)
T 3tcm_A 265 FCKN--EGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQ 342 (500)
T ss_dssp HHHH--HTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHH
T ss_pred HHHH--cCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHH
Confidence 6998 99999999998764321 111 110123777899999854444 599887 8888877
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH----------HHHHhChHHHHHHHHHHHHHHHHHHHH
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD----------LIFEEGLENVIERHRRLGKATRLAVEA 291 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~ 291 (367)
+.... . . ..+++.....++..++. .+.++ ++++++++.++++++.+.|++
T Consensus 343 l~~~~---------------~-~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~ 402 (500)
T 3tcm_A 343 IYKIA---------------S-V---NLCSNITGQILASLVMNPPKASDESYASYKAE-KDGILASLARRAKALEHAFNK 402 (500)
T ss_dssp HHHHH---------------H-T---TCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH---------------h-c---ccCCCHHHHHHHHHHhcCccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 75321 0 0 22356655566665654 12222 567888899999999999999
Q ss_pred c-CCccccCCCccCCCceEEEEc--CC---------CCC-HHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCC
Q 017726 292 W-GLKNCTQKEEWFSDTVTAVIV--PS---------HIN-SSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLN 355 (367)
Q Consensus 292 ~-g~~~~~~~~~~~~~~~~~~~~--~~---------~~~-~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~ 355 (367)
+ |+.+..+ .++.++++++ |. +.. ...++..+++++||.+.+|..+. ...+||+++....+
T Consensus 403 ~~g~~~~~~----~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e 478 (500)
T 3tcm_A 403 LEGITCNEA----EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQED 478 (500)
T ss_dssp STTEECCCC----CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTT
T ss_pred CCCcEEecC----CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHH
Confidence 8 8888776 4555555443 21 112 22344556666799999986543 23569999875555
Q ss_pred HHHHHHhhhh
Q 017726 356 EVMFNFQLLF 365 (367)
Q Consensus 356 ~~~~~~~~l~ 365 (367)
+.+...+.|.
T Consensus 479 ~i~~~i~~l~ 488 (500)
T 3tcm_A 479 KIPAVISRFT 488 (500)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 130
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.96 E-value=3.8e-28 Score=223.01 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=222.7
Q ss_pred CCCCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-C
Q 017726 3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-L 81 (367)
Q Consensus 3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~ 81 (367)
++|. +.+.+.. |. .|+.+++++.+...... +.......++++.++++++.+ .+++++||++|+..++.++ +
T Consensus 5 ~~~~--~~i~~~~-p~-~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~al~~~~~~~~~ 76 (393)
T 1mdo_A 5 KMMS--DFLPFSR-PA-MGAEELAAVKTVLDSGW-ITTGPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMALGI 76 (393)
T ss_dssp ------CCBCSCC-CC-CCHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHTTC
T ss_pred cccc--cccccCC-CC-CCHHHHHHHHHHHhcCC-cCCChHHHHHHHHHHHHhCCC---cEEEecChHHHHHHHHHHcCC
Confidence 4553 3344443 43 56777888877543221 112367889999999999975 4899999999999999998 8
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
.+||+|+++.++|++.. ..++..|++++.++.+++ +.+|+++++++++ +++++|++++ |+|.+.|+++|.
T Consensus 77 ~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~---~~G~~~~~~~i~ 147 (393)
T 1mdo_A 77 GEGDEVITPSMTWVSTL--NMIVLLGANPVMVDVDRDTLMVTPEHIEAAIT----PQTKAIIPVH---YAGAPADLDAIY 147 (393)
T ss_dssp CTTCEEEEESSSCHHHH--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC----TTEEEECCBC---GGGCCCCHHHHH
T ss_pred CCCCEEEeCCCccHhHH--HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcC----CCceEEEEeC---CCCCcCCHHHHH
Confidence 99999999999888754 456778999999998764 5789999999997 4678888764 799999999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeecccccc-ceEEEecCC--CcccCCCcceeeeeC-HHHHHHhccCCCCceeech-H
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWG-IDVALTGSQ--KALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDW-K 235 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~-~d~~~~s~~--K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~-~ 235 (367)
++|++ +|+++|+|++|+.+... +....+ .|++++|+| |+++++. +|+++.+ +++++++..........+. .
T Consensus 148 ~l~~~--~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (393)
T 1mdo_A 148 ALGER--YGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWD 223 (393)
T ss_dssp HHHHH--HTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred HHHHH--cCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCcccccc-ceEEEeCCHHHHHHHHHHHhcCCcccchh
Confidence 99999 99999999999976543 222234 899999988 9997654 5888886 7888777643322211110 0
Q ss_pred HH----HHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCC--CccCCCce
Q 017726 236 DY----IKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK--EEWFSDTV 308 (367)
Q Consensus 236 ~~----~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~ 308 (367)
.+ ...++..+. ..+..+. +.+++......++++..++.+++++++.+.|++.++++.... .....+.+
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~-----~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 298 (393)
T 1mdo_A 224 RQSGGRAPQAEVLAPGYKYNLPD-----LNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHL 298 (393)
T ss_dssp --------CCEESSCCCBCCCCH-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSC
T ss_pred hhcccccccccccccCccCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEE
Confidence 00 001110000 0011222 122222222234677788888899999999998776554321 11124456
Q ss_pred EEEEcCC---CCCHHHHHHHHHhhCCeEEccCCCCC---------------------CCcEEEEeecCCCCHHHH
Q 017726 309 TAVIVPS---HINSSEIVRRAWQRYNLSLGLGLNKV---------------------AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 309 ~~~~~~~---~~~~~~l~~~L~~~~gv~v~~g~~~~---------------------~~~~iRi~~~~~~~~~~~ 359 (367)
+++.+++ +.+..++.+.|.++ ||.++++..+. ....+|+++....+++|+
T Consensus 299 ~~v~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i 372 (393)
T 1mdo_A 299 FIIRVDEARCGITRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDF 372 (393)
T ss_dssp EEEECCHHHHSSCHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHH
T ss_pred EEEEecccccccCHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHH
Confidence 7888853 56788999999764 99999876431 123799998766665443
No 131
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.96 E-value=9.7e-28 Score=219.97 Aligned_cols=294 Identities=17% Similarity=0.083 Sum_probs=203.1
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchH
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~ 97 (367)
+++++.+++.+.... ..++.......++++.+++++|.+ +.+++ +|||+|+..++.++ +.+||+|+++.++|++.
T Consensus 15 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~-~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~ 91 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAA--HALAV-TNGTHALELALQVMGVGPGTEVIVPAFTFISS 91 (388)
T ss_dssp CCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCS--EEEEE-SCHHHHHHHHHHHTTCCTTCEEEEESSSCTHH
T ss_pred CCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCC--eEEEe-CCHHHHHHHHHHHcCCCCcCEEEECCCccHHH
Confidence 446777777764332 122223366789999999999986 34555 55699999999998 89999999999998886
Q ss_pred HHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 98 LWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 98 ~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
. ..++..|++++.++.+++ +.+|+++++++++ +++++|+ |+||||.+.|+++|.++|++ +|+++|+|+
T Consensus 92 ~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~---~~n~tG~~~~l~~i~~la~~--~~~~li~D~ 160 (388)
T 1b9h_A 92 S--QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVT----PRTKVIM---PVHMAGLMADMDALAKISAD--TGVPLLQDA 160 (388)
T ss_dssp H--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH--HTCCBCEEC
T ss_pred H--HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC----cCceEEE---EeCCccCcCCHHHHHHHHHH--cCCEEEEec
Confidence 4 456778999999998864 6889999999997 4668777 88999999999999999999 999999999
Q ss_pred eeccCcee--ecccccc-ceEEEecCCCcccCCCcceeeeeCHH-H--HHHhccCCCCceeechHHHHHHh---hcCCcc
Q 017726 177 VSSICAID--FRMDEWG-IDVALTGSQKALSLPTGMGIVCASPK-A--LEASKTAKSVRVFFDWKDYIKFY---NLGTFW 247 (367)
Q Consensus 177 ~~~~~~~~--~~~~~~~-~d~~~~s~~K~~~g~~g~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 247 (367)
+|+.+... .++...+ +++..+|.+|+++|+. +|+++.+++ + ++++.......... ....+ ..|+
T Consensus 161 a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~-- 233 (388)
T 1b9h_A 161 AHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGRPR----DDRRYFHKIAGS-- 233 (388)
T ss_dssp TTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTCCT----TCSSCCCCSCCC--
T ss_pred chhcCCccCCeecccccceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHHHHHhCCCCc----cCccceeecccc--
Confidence 99976643 3333333 5566666779997655 599988876 5 45543221100000 00000 0121
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc--cCCCceEEEEcCCC--CCHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE--WFSDTVTAVIVPSH--INSSEI 322 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~l 322 (367)
.+.++....+++..+++ .+++..++.+++++++.+.|+++ |+.+..+.+. ...+++++++++.. .+.+++
T Consensus 234 ~~~~~~~~~a~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (388)
T 1b9h_A 234 NMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNAL 308 (388)
T ss_dssp BCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHH
Confidence 11244433333222222 25667788888999999999987 8877653221 13456788988532 256789
Q ss_pred HHHHHhhCCeEEccCCCC
Q 017726 323 VRRAWQRYNLSLGLGLNK 340 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~ 340 (367)
.+.|.+ +||.+++++.+
T Consensus 309 ~~~L~~-~gI~v~~~~~~ 325 (388)
T 1b9h_A 309 VDRLVE-AGLPAFAAFRA 325 (388)
T ss_dssp HHHHHH-TTCCEEECCCC
T ss_pred HHHHHH-CCCCcccccCc
Confidence 999975 49999887653
No 132
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.96 E-value=4.3e-28 Score=222.99 Aligned_cols=315 Identities=11% Similarity=0.009 Sum_probs=213.5
Q ss_pred cCCCCCChHHHHHHHcc-CCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCc--eEEecCChhHHHHHHH--HccC
Q 017726 14 VPGPVHIPDQVIRAMNR-NNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGT--PFLIPTTGTGAWESAL--TNTL 81 (367)
Q Consensus 14 ~~~p~~~~~~v~~a~~~-~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~--~v~~~~ggt~al~~~~--~~~~ 81 (367)
.++++++++.+.+++.+ .... ...|.......++|+.++++++.. .++ ++++|+|+++++..++ .+++
T Consensus 39 ~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~ 118 (397)
T 3fsl_A 39 EDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY 118 (397)
T ss_dssp TTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH
T ss_pred CCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc
Confidence 34566777899999887 4332 122322344568899999988652 234 6999999999999984 4567
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---H
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---L 156 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~ 156 (367)
.+||+|++..|.|++. ...++..|.+++.++. +.++.+|++++++++++.. ++++++++++|+||||.+++ +
T Consensus 119 ~~gd~vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~~~~~l 195 (397)
T 3fsl_A 119 FPESGVWVSDPTWENH--VAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ-AGSIVLLHPCCHNPTGADLTNDQW 195 (397)
T ss_dssp CTTCCEEEESSCCHHH--HHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC-TTCEEEECSSSCTTTCCCCCHHHH
T ss_pred CCCCeEEEeCCCchhH--HHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC-CCCEEEEeCCCCCCCCcCCCHHHH
Confidence 8999999999988774 3557788999999998 4567889999999998643 46789999999999999976 4
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCcee-----ec---c-ccccceEEEecCCCcccCCCc--ceeeee---CHHHHHHh
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAID-----FR---M-DEWGIDVALTGSQKALSLPTG--MGIVCA---SPKALEAS 222 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~---~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~ 222 (367)
++|.++|++ +|+++|+|++|+.+... .. . ...+.++++.|++|.++ ++| +|++++ +++.++++
T Consensus 196 ~~l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~riG~~~~~~~~~~~~~~~ 272 (397)
T 3fsl_A 196 DAVIEILKA--RELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS-LYGERVGGLSVMCEDAEAAGRV 272 (397)
T ss_dssp HHHHHHHHH--TTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHh--CCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc-CcCCCeeEEEEecCCHHHHHHH
Confidence 588889999 99999999998765432 11 1 12346789999999984 555 688864 45555544
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHc----C
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAW----G 293 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~----g 293 (367)
... .......+ ..+++.....++..++.... +..++++++++.++++++.+.|++. |
T Consensus 273 ~~~------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 338 (397)
T 3fsl_A 273 LGQ------------LKATVRRN--YSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERN 338 (397)
T ss_dssp HHH------------HHHHHHTT--TSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred HHH------------HHHHHHhc--cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 311 00000011 11234333333333333210 2236788899999999999999997 5
Q ss_pred CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
+.+..+ ..+.++++.+ +.+.+.+.| +++||.+.+|. ||++.. ..++.+...+.|+
T Consensus 339 ~~~~~~----~~~~~~~~~~----~~~~~~~~l-~~~gi~v~~g~--------Ris~~~~~~~~i~~~~~~l~ 394 (397)
T 3fsl_A 339 FDYLLN----QRGMFSYTGL----SAAQVDRLR-EEFGVYLIASG--------RMCVAGLNTANVQRVAKAFA 394 (397)
T ss_dssp CTHHHH----CCSSEEECCC----CHHHHHHHH-HTTCEECCTTC--------EEEGGGCCTTTHHHHHHHHH
T ss_pred ceeecC----CceEEEecCC----CHHHHHHHH-HhCCEEECCCC--------eEEEEecCHhhHHHHHHHHH
Confidence 776665 3444454443 445555555 56699998763 888754 3444555555554
No 133
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.96 E-value=1.9e-28 Score=227.05 Aligned_cols=313 Identities=9% Similarity=0.007 Sum_probs=209.9
Q ss_pred CChHHHHHHHccCC---C--CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH--HHHHHccCCC--------
Q 017726 19 HIPDQVIRAMNRNN---E--DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW--ESALTNTLSP-------- 83 (367)
Q Consensus 19 ~~~~~v~~a~~~~~---~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al--~~~~~~~~~~-------- 83 (367)
++++.+.+++.+.. . ....|.......++|+.++++++++++ +|++|+|+++++ .+++.++..+
T Consensus 48 ~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~ 126 (422)
T 3d6k_A 48 DLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPAD-LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPW 126 (422)
T ss_dssp HTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGG-GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCG
T ss_pred CCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChh-HEEEecchHHHHHHHHHHHHhcCccccccccc
Confidence 45556777776542 1 122343334467999999999998764 599999999987 5566665544
Q ss_pred ----CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEE-EEecCCCccccccHH-
Q 017726 84 ----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC-IVHNETATGVTNNLS- 157 (367)
Q Consensus 84 ----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~-~~~~~n~tG~~~~~~- 157 (367)
+|+|++..|.|+++. ..++..|.+++.++.+.++ +|++++++++++ .++++|+ +++|+||||.++|.+
T Consensus 127 ~~~d~~~Vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~---~~~~~v~~~~~~~NPtG~~~~~~~ 200 (422)
T 3d6k_A 127 SAEEKVKWLCPVPGYDRHF--TITEHFGFEMINVPMTDEG-PDMGVVRELVKD---PQVKGMWTVPVFGNPTGVTFSEQT 200 (422)
T ss_dssp GGSSCCEEEEEESCCHHHH--HHHHHHTCEEEEEEEETTE-ECHHHHHHHHTS---TTEEEEEECCSSCTTTCCCCCHHH
T ss_pred ccCCCCEEEEeCCccHHHH--HHHHHcCCEEEecCCCCCC-CCHHHHHHHHhc---CCCeEEEEcCCCCCCCCCCCCHHH
Confidence 347999999887654 5567789999999987654 899999999974 3678888 789999999999877
Q ss_pred --HHHHHHH-hcCCCcEEEEeeeeccCce-----e-ecc-------ccccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 158 --KVRKLLD-EYRHPALFLVDGVSSICAI-----D-FRM-------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 158 --~i~~~~~-~~~~~~~vi~D~~~~~~~~-----~-~~~-------~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
+|.++|+ + +|++||+|++|+.+.+ . .+. ...+.++++.|+||+..+..++|+++++++++++
T Consensus 201 l~~l~~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~ 278 (422)
T 3d6k_A 201 CRELAEMSTAA--PDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEW 278 (422)
T ss_dssp HHHHHHCCCSS--TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHH
T ss_pred HHHHHHHHhhc--cCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHH
Confidence 6666666 7 9999999999973111 0 111 1235789999999984322347999999998887
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHH----cC-C
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEA----WG-L 294 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~----~g-~ 294 (367)
+.... .. ..++.+.....++..+++... +.-+++.++.++++++.+.+.|++ .| +
T Consensus 279 l~~~~-------------~~-----~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~ 340 (422)
T 3d6k_A 279 YASHA-------------NV-----RGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVA 340 (422)
T ss_dssp HHHHH-------------HH-----HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHH-------------Hh-----hcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCce
Confidence 76321 00 012355544444444543311 112566777778888888888876 23 4
Q ss_pred ccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCC-----CCCcEEEEeecC-CCCHHHHHHhhh
Q 017726 295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNK-----VAGKVFRIGHLG-HLNEVMFNFQLL 364 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~~-----~~~~~iRi~~~~-~~~~~~~~~~~l 364 (367)
.+..+ ..+.+++++++.. +..++.+.|. ++||.+.+ |..+ ...+++||++.. ..++.+...+.|
T Consensus 341 ~~~~p----~~g~~~~~~~~~~-~~~~~~~~l~-~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l 411 (422)
T 3d6k_A 341 KWTSP----TGGYFISVDVVPG-TASRVVELAK-EAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411 (422)
T ss_dssp EECCC----SBSSCEEEEESTT-CHHHHHHHHH-HTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHH
T ss_pred EEeCC----CcceEEEEECCCC-CHHHHHHHHH-HCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 54444 3456788888644 5677777775 56999998 4322 124689999764 333333333333
No 134
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.96 E-value=4.8e-28 Score=220.86 Aligned_cols=319 Identities=12% Similarity=0.094 Sum_probs=223.8
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEE
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRII 88 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl 88 (367)
.+.+..+...+++ +.+++.+...... +.......++++.++++++.+ .+++++||++|+..++.++ +.+||+|+
T Consensus 8 ~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~~~~~~~~~gd~v~ 82 (374)
T 3uwc_A 8 YSYLERQFADIEP-YLNDLREFIKTAD-FTLGAELEKFEKRFAALHNAP---HAIGVGTGTDALAMSFKMLNIGAGDEVI 82 (374)
T ss_dssp SCCHHHHTSSCHH-HHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred eeccccCCCCchH-HHHHHHHHHHcCC-cccChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcCCCCCCEEE
Confidence 4556667777777 8888776543222 223467889999999999976 3788999999999999998 89999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH 168 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~ 168 (367)
++.+.|++.. ..++..|.+++.++.+.++.+|+++++++++ +++++|+ ++||||.+.|+++|.++|++ +
T Consensus 83 ~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~---~~n~~G~~~~~~~i~~~~~~--~ 151 (374)
T 3uwc_A 83 TCANTFIASV--GAIVQAGATPVLVDSENGYVIDPEKIEAAIT----DKTKAIM---PVHYTGNIADMPALAKIAKK--H 151 (374)
T ss_dssp EESSSCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGTGGGCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH--T
T ss_pred ECCCccHHHH--HHHHHcCCEEEEEecCCCCCcCHHHHHHhCC----CCceEEE---EeCCcCCcCCHHHHHHHHHH--c
Confidence 9999888754 4567889999999998778899999999987 4668777 88999999999999999999 9
Q ss_pred CcEEEEeeeeccCceeecccccc--ceEEEecCC--CcccCCCcceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAIDFRMDEWG--IDVALTGSQ--KALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~~~~~~~~--~d~~~~s~~--K~~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++|+|++|+.+.. ++....+ .|++++|+| |+++++...|+++.++ ++.+++.......... .+..
T Consensus 152 ~~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 223 (374)
T 3uwc_A 152 NLHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RDVC 223 (374)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TTEE
T ss_pred CCEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-------cCcc
Confidence 999999999998764 3333333 699999966 9996523357777654 5655555432211110 0110
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C-CccccCCC-ccCCCceEEEEcCCCCCHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G-LKNCTQKE-EWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 320 (367)
... .++... ..+.+++......+++++.++..++++++.+.|++. + +.+..... .......+.+.. .+..
T Consensus 224 ~~~-~~~~~~---~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 296 (374)
T 3uwc_A 224 VEY-GINCRM---DTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV---KYRD 296 (374)
T ss_dssp SSC-CCBCBC---CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE---TTHH
T ss_pred ccc-cccCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc---CCHH
Confidence 100 001111 234556666566667888889999999999999887 4 65533211 112222333443 2678
Q ss_pred HHHHHHHhhCCeEEccCCC-CC----------------------CCcEEEEeecCCCCHHHHH
Q 017726 321 EIVRRAWQRYNLSLGLGLN-KV----------------------AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~-~~----------------------~~~~iRi~~~~~~~~~~~~ 360 (367)
++.+.|.++ ||.+++++. +. ....+|++++...+++|+.
T Consensus 297 ~l~~~L~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~ 358 (374)
T 3uwc_A 297 QLFQYLKDN-GIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEIN 358 (374)
T ss_dssp HHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHH
T ss_pred HHHHHHHHC-CCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHH
Confidence 899999765 999988761 10 0157999988877765543
No 135
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.96 E-value=1.1e-27 Score=221.78 Aligned_cols=313 Identities=13% Similarity=0.019 Sum_probs=211.3
Q ss_pred CCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCc--eEEecCChhHHHHHHH--HccCCCC
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGT--PFLIPTTGTGAWESAL--TNTLSPG 84 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~--~v~~~~ggt~al~~~~--~~~~~~g 84 (367)
+++++++.+.+++.+.... ...|.......++|+.++++++.. .++ ++++|+||++|+..++ .+++.+|
T Consensus 64 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~g 143 (420)
T 4f4e_A 64 GKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPK 143 (420)
T ss_dssp SCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTT
T ss_pred CCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCC
Confidence 4556668899988874332 122333344568888898888542 234 6999999999999984 4567899
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV 159 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i 159 (367)
|+|+++.|.|.++ ...++..|.+++.++. +.++.+|++++++++++.+ ++++++++++|+||||.+++ +++|
T Consensus 144 d~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~l~~i 220 (420)
T 4f4e_A 144 AKVAISDPSWENH--RALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYE-PGTIVVLHACCHNPTGVDLNDAQWAQV 220 (420)
T ss_dssp CCEEEEESCCHHH--HHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCC-TTCEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred CEEEEeCCCcHhH--HHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 9999999988774 3567789999999998 3467889999999998643 46799999999999999986 5578
Q ss_pred HHHHHhcCCCcEEEEeeeeccCceee-----c---c-ccccceEEEecCCCcccCCCc--ceeeee---CHHHHHHhccC
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAIDF-----R---M-DEWGIDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTA 225 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~~-----~---~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~~~~ 225 (367)
.++|++ +|+++|+|++|+.+.... . . ...+.++++.|+||.++ ++| +|++++ +++.++++...
T Consensus 221 ~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~~~~~~~~~~~~~~~ 297 (420)
T 4f4e_A 221 VEVVKA--RRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS-LYGERVGALSIITDSKDEAARVLSQ 297 (420)
T ss_dssp HHHHHH--HTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHH--CCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc-CcCCCcEEEEEEcCCHHHHHHHHHH
Confidence 888999 999999999987554321 1 0 12356799999999995 555 688753 55655443211
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHc----CCcc
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAW----GLKN 296 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~ 296 (367)
.......+ ..+++.....++..++.... +..++++++++.++++++.+.|+++ |+.+
T Consensus 298 ------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 363 (420)
T 4f4e_A 298 ------------LKRVIRTN--YSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSF 363 (420)
T ss_dssp ------------HHHHHHTT--TSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTH
T ss_pred ------------HHHHHhcc--cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 00010011 11233333333333333211 1226788899999999999999997 5666
Q ss_pred ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
..+ ..+.++++.+ +.+.+.+.| +++||.+.++. |+++.. ..++.+...+.|.
T Consensus 364 ~~~----~~g~~~~~~~----~~~~~~~~l-~~~gI~v~~~~--------Ris~~~~~~~~i~~~~~~l~ 416 (420)
T 4f4e_A 364 INA----QRGMFSYSGL----TSAQVDRLR-EEFGIYAVSTG--------RICVAALNTRNLDVVANAIA 416 (420)
T ss_dssp HHH----SCSSEEECCC----CHHHHHHHH-HHHCEECCTTS--------EEEGGGCCTTTHHHHHHHHH
T ss_pred ECC----CccEEEEeCC----CHHHHHHHH-HhCCEEecCCC--------eEEEecCCHHHHHHHHHHHH
Confidence 655 3454444433 455555555 55699998752 888754 4445555555554
No 136
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.96 E-value=2.3e-28 Score=222.67 Aligned_cols=288 Identities=16% Similarity=0.072 Sum_probs=194.1
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
|++++++++++++..+ .++ ....+++++.+++++|.++++++++++||++|+..++.++ +||+|+++.+.|+
T Consensus 38 ~~~~~~~~v~~a~~~~----~~~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~ 109 (374)
T 2aeu_A 38 GGFLIDEKDKALLNTY----IGS--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELP 109 (374)
T ss_dssp CCCCCCHHHHHHHTST----THH--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSS
T ss_pred CCCCCCHHHHHHHHHh----cCc--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCC
Confidence 5889999999999832 222 3444677888888999854356899999999999999887 9999999999766
Q ss_pred hHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccE-EEEEecCCCcc-ccccHHHHHHHHHhcCCCcEE
Q 017726 96 SLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKA-ICIVHNETATG-VTNNLSKVRKLLDEYRHPALF 172 (367)
Q Consensus 96 ~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~l-v~~~~~~n~tG-~~~~~~~i~~~~~~~~~~~~v 172 (367)
++. +...++..|++++.+ .|+++++++ + +++++ |++++|+|||| ...++++|.++|++ +|+++
T Consensus 110 ~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~----~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~--~~~~l 175 (374)
T 2aeu_A 110 GHPSIERSCKIVNAKYFES-------DKVGEILNK-I----DKDTLVIITGSTMDLKVIELENFKKVINTAKN--KEAIV 175 (374)
T ss_dssp CCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-C----CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHH--HTCCE
T ss_pred ccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-C----CCccEEEEEccCCCCCCCCcccHHHHHHHHHH--cCCEE
Confidence 542 223677789998888 278998887 4 57899 99999999999 88899999999999 99999
Q ss_pred EEeeeeccCce-ee-c--cccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 173 LVDGVSSICAI-DF-R--MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 173 i~D~~~~~~~~-~~-~--~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
|+|++|+.+.. +. . ....+.|++++|+||+++|+ ++|++++++++++++.... ...+
T Consensus 176 i~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~--------------~~~~---- 236 (374)
T 2aeu_A 176 FVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEG--------------TKFG---- 236 (374)
T ss_dssp EEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHH--------------HTTT----
T ss_pred EEECCcccccccccccCCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhh--------------cccc----
Confidence 99999876431 10 1 12246799999999999765 6799999999988776421 0001
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HHHHHH----c----CCccccCCCccCCCceEEE-EcCC
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT----RLAVEA----W----GLKNCTQKEEWFSDTVTAV-IVPS 315 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l----~~~L~~----~----g~~~~~~~~~~~~~~~~~~-~~~~ 315 (367)
.+++...+.++.++++.+. . +..++..++++.+ ++.|++ . |+.+..+ ..+.+++. ..++
T Consensus 237 ~~~~~~~~~a~~~al~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~----~~g~~~~~~~~~~ 308 (374)
T 2aeu_A 237 LEAQPPLLAGIYRALKNFN---L-ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERT----PTGFVIKRVYKDD 308 (374)
T ss_dssp CBCCHHHHHHHHHHHHHCC---H-HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEEC----SSEEEEEEEESSH
T ss_pred CCCCHHHHHHHHHHHHHHh---H-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeC----CceEEEEeecccc
Confidence 1355555555666665531 1 1233344444444 444444 1 3333222 13323222 2211
Q ss_pred CCC---HHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecC
Q 017726 316 HIN---SSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLG 352 (367)
Q Consensus 316 ~~~---~~~l~~~L~~~~gv~v~~g~~~-~~~~~iRi~~~~ 352 (367)
..+ ..+++..+.+++||.+.+|... ..++++||++..
T Consensus 309 ~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~ 349 (374)
T 2aeu_A 309 TINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTS 349 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTS
T ss_pred cccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCC
Confidence 001 1226666666679999998642 334579999754
No 137
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.96 E-value=4e-28 Score=223.52 Aligned_cols=318 Identities=9% Similarity=-0.022 Sum_probs=208.0
Q ss_pred ccccCCCCCChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHhcCCC-----CceEEe--cCChhHHHHHHHHcc-
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTTS-----GTPFLI--PTTGTGAWESALTNT- 80 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~v~~--~~ggt~al~~~~~~~- 80 (367)
+++.++|+++.+++.+++.+... ...+|.......++|+.++++++... +++|++ |+||++++..++.++
T Consensus 38 ~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~ 117 (401)
T 7aat_A 38 YRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQ 117 (401)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred EECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHH
Confidence 33556677777778887665422 22233323346689999999887541 345766 999999999877654
Q ss_pred --CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 81 --LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 81 --~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+.+||+|+++.|.|.++. ..++..|.+++.++.+ .++.+|++++++.+++.+ ++++++++++||||||.+++
T Consensus 118 ~~~~~gd~Vlv~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~ 194 (401)
T 7aat_A 118 RFFKFSRDVYLPKPSWGNHT--PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP-EKSIILLHACAHNPTGVDPRQ 194 (401)
T ss_dssp HHCTTCCEEEEEESCCTTHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC-TTCEEEEESSSCTTTCCCCCH
T ss_pred HhccCCCEEEEcCCCchhHH--HHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCC-CCcEEEEeCCCCCCCCCCCCH
Confidence 489999999999887753 5577889999999975 357899999998887643 57899999999999998876
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCcee-e-----c----cccccceEEEecCCCcccCCCc--ceeeee---CHHH
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAID-F-----R----MDEWGIDVALTGSQKALSLPTG--MGIVCA---SPKA 218 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~-----~----~~~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~ 218 (367)
+++|.++|++ +|+++++|++|...... . . ....+..+++.|+||.++ ++| +|++++ +++.
T Consensus 195 ~~l~~i~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~RiG~l~~~~~~~~~ 271 (401)
T 7aat_A 195 EQWKELASVVKK--RNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG-LYGERAGAFTVICRDAEE 271 (401)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSSHHH
T ss_pred HHHHHHHHHHHh--CCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc-cccCceEEEEEEeCCHHH
Confidence 6778888999 99999999998754321 1 0 122346789999999984 556 688775 5554
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH--H-H--HhChHHHHHHHHHHHHHHHHHHHHcC
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--I-F--EEGLENVIERHRRLGKATRLAVEAWG 293 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~--~-~--~~g~~~~~~~~~~~~~~l~~~L~~~g 293 (367)
.+.+.... ....... ...++.....+...++.. + . ...+++.++++.++++++.+.|++++
T Consensus 272 ~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 272 AKRVESQL------------KILIRPM--YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp HHHHHHHH------------HHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH------------HHHHHhc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33332110 0000000 112333222222222221 1 0 11267788899999999999999975
Q ss_pred ----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC-CCHHHHHHhhhh
Q 017726 294 ----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-LNEVMFNFQLLF 365 (367)
Q Consensus 294 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~-~~~~~~~~~~l~ 365 (367)
+.+..+ ..+++.+..+ +. +.++.|.+++||.+.++ +||++... .++.+...++|+
T Consensus 338 ~~~~~~~~~~----~~~~~~~~~~----~~-~~~~~ll~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~ 397 (401)
T 7aat_A 338 SSHNWQHITD----QIGMFCFTGL----KP-EQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAHAIH 397 (401)
T ss_dssp CCSCCHHHHH----CCSSEEECCC----CH-HHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHH
T ss_pred CCCCCceecC----CcceEEecCC----CH-HHHHHHHHhCCEeccCC--------CeEEeccCChhhHHHHHHHHH
Confidence 555554 3454444433 44 44466666779998653 68887543 333555555554
No 138
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.96 E-value=7.5e-29 Score=229.51 Aligned_cols=309 Identities=10% Similarity=0.012 Sum_probs=199.6
Q ss_pred CcccccCCCCCCh----HHHHHHHccCCCCC------CCCcHHHHHHHHHHHHHHHh------cCCCCceEEecCChhHH
Q 017726 9 KNHLFVPGPVHIP----DQVIRAMNRNNEDY------RSPAVPALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGA 72 (367)
Q Consensus 9 ~~~~~~~~p~~~~----~~v~~a~~~~~~~~------~~~~~~~~~~~~~~~la~~~------~~~~~~~v~~~~ggt~a 72 (367)
..+.+..|-+... +.+.+++.+..... ..|.......++|+.+++++ ++++ ++|++|+|+++|
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~t~a 110 (417)
T 3g7q_A 32 GAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEP-QNIALTNGSQSA 110 (417)
T ss_dssp CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHH
T ss_pred CceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCc-ccEEEeCCcHHH
Confidence 4456666544442 44555555432111 12333344567888888877 3444 469999999999
Q ss_pred HHHHHHccCCCCC-----eEEEE-eCCcchHHHH-HHH---HHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEE
Q 017726 73 WESALTNTLSPGD-----RIISF-LIGQFSLLWI-DQQ---QRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAI 141 (367)
Q Consensus 73 l~~~~~~~~~~gd-----~vl~~-~~~~~~~~~~-~~~---~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv 141 (367)
+..++.+++.+|| +|+++ .|.|+++... ... ...+..+..++.+. ++.+|+++++ +. +++++|
T Consensus 111 l~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~----~~~~~v 184 (417)
T 3g7q_A 111 FFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG----EETGMI 184 (417)
T ss_dssp HHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CC----TTEEEE
T ss_pred HHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cc----cCceEE
Confidence 9999999998987 88887 7877665311 101 11233444444331 3467899887 44 578999
Q ss_pred EEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeee
Q 017726 142 CIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVC 213 (367)
Q Consensus 142 ~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~ 213 (367)
++++|+||||.++| +++|.++|++ +|+++|+|++|+.... .......+.++++.|+||+..+..++|+++
T Consensus 185 ~~~~p~NptG~~~~~~~~~~l~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~ 262 (417)
T 3g7q_A 185 CVSRPTNPTGNVITDEELMKLDRLANQ--HNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIII 262 (417)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHH--TTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEE
T ss_pred EECCCCCCCCCccCHHHHHHHHHHHHH--cCCEEEEeCCCccccccccccccccCCCCCEEEEEechhccCCCcceEEEE
Confidence 99999999999998 7888999999 9999999999974221 111122367899999999543334479999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC----hHH-HHHHHHHHHHHHHHH
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG----LEN-VIERHRRLGKATRLA 288 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g----~~~-~~~~~~~~~~~l~~~ 288 (367)
.++++++++..... . . .++++.....++..++ .... +.+ +++++.++++.+.+.
T Consensus 263 ~~~~~~~~~~~~~~-------------~--~---~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T 3g7q_A 263 ANDKTITAIANMNG-------------I--I---SLAPGGMGPAMMCEMI---KRNDLLRLSETVIKPFYYQRVQQTIAI 321 (417)
T ss_dssp CCHHHHHHHHHHHH-------------H--H---CCCCCSHHHHHHHHHH---HTTCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHhhc-------------c--e---eeCCCcHHHHHHHHHH---cCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887764210 0 0 1123333223333333 3222 222 566778888888888
Q ss_pred HHHc----CCccccCCCccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCC---------CcEEEEeecC
Q 017726 289 VEAW----GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVA---------GKVFRIGHLG 352 (367)
Q Consensus 289 L~~~----g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~---------~~~iRi~~~~ 352 (367)
|++. ++.+..+ ..+.++++.++. +.+..++.+.|. ++||.+.+|..+.. .+++||++..
T Consensus 322 l~~~l~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~ 394 (417)
T 3g7q_A 322 IRRYLSEERCLIHKP----EGAIFLWLWFKDLPITTELLYQRLK-ARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP 394 (417)
T ss_dssp HHHHCCTTTCEEECC----CBSSEEEEECTTCSSCHHHHHHHHH-HTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS
T ss_pred HHHhcccCCceeeCC----CcceEEEEEcCCCCCCHHHHHHHHH-HCCEEEECchhhCCCCccccccCCCeEEEEecC
Confidence 8873 3566555 355678888865 578899999995 55999998754322 4689999765
No 139
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.96 E-value=5.9e-27 Score=215.53 Aligned_cols=216 Identities=15% Similarity=0.137 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
....+++++.+++++|.+ ++++++||++|+..++.+++.+||.|+++.+.|.++. +...++..|++++.++.+
T Consensus 61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 135 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-- 135 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--
Confidence 356779999999999985 3677788899999999988999999999999888754 323577889999999875
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||||.+.|+++|.++|++. +|+++++|++|+.+....+. ..++|+++.|
T Consensus 136 ---d~~~l~~~i~----~~t~~v~l~~p~NptG~v~~l~~i~~la~~~-~~~~li~De~~~~~~~~~~~-~~~~di~~~S 206 (404)
T 1e5e_A 136 ---IPGEVKKHMK----PNTKIVYFETPANPTLKIIDMERVCKDAHSQ-EGVLVIADNTFCSPMITNPV-DFGVDVVVHS 206 (404)
T ss_dssp ---STTHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-TTCEEEEECTTTCTTTCCGG-GGTCSEEEEE
T ss_pred ---CHHHHHHhcC----CCCcEEEEECCCCCCCcccCHHHHHHHHHhh-cCCEEEEECCCchhhhCCcc-ccCCEEEEEc
Confidence 7899999987 4679999999999999999999999999863 58999999999876643233 3579999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHH-HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
+||+++++.+ +|++++++++++ ++....... .....+.....+...+++. ++.+.
T Consensus 207 ~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~-----------------~g~~~~~~~~~~~~~~l~~-----~~~~~ 264 (404)
T 1e5e_A 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI-----------------TGSVISPHDAWLITRGLST-----LNIRM 264 (404)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC-----------------CCCCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred CccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC-----------------CCCCCCHHHHHHHHHhHhH-----HHHHH
Confidence 9999986655 499999999887 666432110 0012444333333333332 34556
Q ss_pred HHHHHHHHHHHHHHHHc
Q 017726 276 ERHRRLGKATRLAVEAW 292 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~ 292 (367)
++..++++.+.+.|++.
T Consensus 265 ~~~~~~~~~l~~~l~~~ 281 (404)
T 1e5e_A 265 KAESENAMKVAEYLKSH 281 (404)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66777888888888775
No 140
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=6.7e-27 Score=216.85 Aligned_cols=310 Identities=15% Similarity=0.125 Sum_probs=207.3
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCC--C------Cc---H-HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYR--S------PA---V-PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~--~------~~---~-~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.+.+.++..+.++.+.+++.+...... + +. . ....+..++.+++++|.+. ..++++||++|+..++
T Consensus 34 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~v~~~~Gs~a~~~al 111 (425)
T 3ecd_A 34 QVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH--ANVQPHSGAQANGAVM 111 (425)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred ceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCC--ceeecCchHHHHHHHH
Confidence 456677777789999999998653211 1 00 0 0223334578889998775 3456899999999999
Q ss_pred HccCCCCCeEEEEeCCcchHH-HHHHHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNF--NVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
.+++.+||+|++..+.|++.. ........|. +++.++.+ .++.+|++++++++++ +++++|++++|+| |..
T Consensus 112 ~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~--~~~ 186 (425)
T 3ecd_A 112 LALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQ---HKPSLIIAGFSAY--PRK 186 (425)
T ss_dssp HHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHH---HCCSEEEEECSCC--CSC
T ss_pred HHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhh---cCCcEEEEccccC--CCc
Confidence 988999999999999887732 2112223344 45555555 3468899999999974 3579999998888 567
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCcee----eccccccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCC
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAID----FRMDEWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSV 228 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~ 228 (367)
.++++|.++|++ +|+++|+|++|..+... ..... .+|+++.|+||+++|+.| |+++.+ +.+.+.+.....
T Consensus 187 ~~l~~i~~l~~~--~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~~-g~~~~~~~~~~~~~~~~~~- 261 (425)
T 3ecd_A 187 LDFARFRAIADS--VGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRGPRG-GFVLTNDEEIAKKINSAVF- 261 (425)
T ss_dssp CCHHHHHHHHHH--HTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHH--cCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCCCCc-EEEEeCCHHHHHHHHhhhC-
Confidence 899999999999 99999999997644321 11111 378999999999977764 999888 456555543211
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.+. ..+++...+.++..++....+.++++..++..++++++.+.|++.|+.+..+. ....+
T Consensus 262 --------------~~~--~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~ 322 (425)
T 3ecd_A 262 --------------PGL--QGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG---TDNHL 322 (425)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSE
T ss_pred --------------ccc--cCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC---CCceE
Confidence 011 22355655666666666555455778899999999999999999888876542 23446
Q ss_pred EEEEcCC-CCCHHHHHHHHHhhCCeEEccCC------CCCCCcEEEEeec
Q 017726 309 TAVIVPS-HINSSEIVRRAWQRYNLSLGLGL------NKVAGKVFRIGHL 351 (367)
Q Consensus 309 ~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~------~~~~~~~iRi~~~ 351 (367)
+++.++. +.+...+.+.|. ++||.+.++. .+.....+|+++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~p~~~~~~~~~~~iRi~~~ 371 (425)
T 3ecd_A 323 LLVDLRPKGLKGAQVEQALE-RAGITCNKNGIPFDPEKPTITSGIRLGTP 371 (425)
T ss_dssp EEEECGGGTCCHHHHHHHHH-HTTEECEECCCTTCSSCTTTCSEEEEESH
T ss_pred EEEEeCCCCCCHHHHHHHHH-HcCCEecccccCCCCCCCCCccceeccch
Confidence 7777643 456778888885 5599998432 1233457999853
No 141
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.96 E-value=5.4e-29 Score=227.12 Aligned_cols=325 Identities=11% Similarity=0.031 Sum_probs=224.5
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIIS 89 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~ 89 (367)
+++.+++.++++++.+++.+...... +.......++++.+++++|.+ .+++++|||+|+..++.++ +.+||+|++
T Consensus 6 ~~l~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~i~~~sgt~al~~~l~~l~~~~gd~Vi~ 81 (373)
T 3frk_A 6 ASFKPMHDEIEYEIKFKFEEIYKRNW-FILGDEDKKFEQEFADYCNVN---YCIGCGNGLDALHLILKGYDIGFGDEVIV 81 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCCcccCCCCHHHHHHHHHHHHCCC-ccCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHcCCCCcCEEEE
Confidence 34556666778888888887543222 233477889999999999975 4889999999999999998 899999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH 168 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~ 168 (367)
+.++|++.. ..++..|++++.++.+ .++.+|+++++++++ +++++|+ ++||+|.+.|+++|.++|++ +
T Consensus 82 ~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~---~~n~~G~~~~l~~i~~l~~~--~ 150 (373)
T 3frk_A 82 PSNTFIATA--LAVSYTGAKPIFVEPDIRTYNIDPSLIESAIT----EKTKAII---AVHLYGQPADMDEIKRIAKK--Y 150 (373)
T ss_dssp ETTSCTHHH--HHHHHHSCEEEEECEETTTTEECGGGTGGGCC----TTEEEEE---EECCTTCCCCHHHHHHHHHH--H
T ss_pred CCCCcHHHH--HHHHHcCCEEEEEeccccccCcCHHHHHHhcC----CCCeEEE---EECCCcCcccHHHHHHHHHH--c
Confidence 999988854 4467789999999987 467889999999987 4678887 66799999999999999999 9
Q ss_pred CcEEEEeeeeccCceeecccccc--ceEEEec--CCCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAIDFRMDEWG--IDVALTG--SQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~~~~~~~~--~d~~~~s--~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++|+|++|+.+.. ++....+ .|++++| ++|+++++...|+++.+ +++.+++...........+ .....
T Consensus 151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~ 225 (373)
T 3frk_A 151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKY----HHIYK 225 (373)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTT----BCCSC
T ss_pred CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCC----ccccc
Confidence 999999999998766 4444444 7898888 55999652335777776 4465555432211100000 00001
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCC-CccCCCceEEEEcCCCCCHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK-EEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 322 (367)
|. .+..+ .+.+++......+++++.++.+++++++.+.|+++++.+.... ........+.+.. .+.+++
T Consensus 226 g~--~~~~~-----~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l 295 (373)
T 3frk_A 226 GF--NSRLD-----ELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS---EKRDEL 295 (373)
T ss_dssp CC--BCCCC-----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE---SSHHHH
T ss_pred cc--cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe---CCHHHH
Confidence 11 11122 3455555555556788888889999999999887663332211 1112222333443 267889
Q ss_pred HHHHHhhCCeEEccCCC-CC----------------C------CcEEEEeecCCCCHHHHH--Hhhhhc
Q 017726 323 VRRAWQRYNLSLGLGLN-KV----------------A------GKVFRIGHLGHLNEVMFN--FQLLFQ 366 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~-~~----------------~------~~~iRi~~~~~~~~~~~~--~~~l~~ 366 (367)
.+.|.++ ||.+++++. +. + ...+|++++...+++|+. .+.|++
T Consensus 296 ~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~ 363 (373)
T 3frk_A 296 QKYLNNN-GIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINA 363 (373)
T ss_dssp HHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHC-CCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 9999765 999997762 11 0 156999988877765544 444443
No 142
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.96 E-value=2.4e-27 Score=219.59 Aligned_cols=309 Identities=17% Similarity=0.139 Sum_probs=210.8
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCC--------CC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYR--------SP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~--------~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
+.+.++....++.+.+++.+...... .+ ......+.+++.+++++|.+.. .+++++|++++..++.
T Consensus 33 ~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~v~~~sGs~a~~~a~~ 110 (420)
T 3gbx_A 33 IELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA--NVQPHSGSQANFAVYT 110 (420)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE--ECCCSSHHHHHHHHHH
T ss_pred eeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc--eeEecCcHHHHHHHHH
Confidence 34455555679999999988652211 01 0123345567899999998653 3445667999999999
Q ss_pred ccCCCCCeEEEEeCCcchHH-HHHH--HHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 79 NTLSPGDRIISFLIGQFSLL-WIDQ--QQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 79 ~~~~~gd~vl~~~~~~~~~~-~~~~--~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
+++.+||+|++..+.|.+.. .... ....+.....++.+.++.+|+++++++++++ ++++|++++|+|+ ...|
T Consensus 111 ~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~---~~~~v~~~~~~~~--~~~~ 185 (420)
T 3gbx_A 111 ALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH---KPKMIIGGFSAYS--GVVD 185 (420)
T ss_dssp HHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH---CCSEEEECCTTCC--SCCC
T ss_pred HhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc---CCeEEEEecCccC--CccC
Confidence 99999999999999887632 1111 1223445556666767789999999999862 4799999888875 4789
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCH---HHHHHhccCCC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASP---KALEASKTAKS 227 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~---~~~~~~~~~~~ 227 (367)
+++|.++|++ +|+++|+|++|+.+.. +.... .+|++++|+||+++|+.| |+++.++ ++.+.+.....
T Consensus 186 l~~l~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~ 260 (420)
T 3gbx_A 186 WAKMREIADS--IGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVF 260 (420)
T ss_dssp HHHHHHHHHH--TTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--cCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcC
Confidence 9999999999 9999999999865432 22222 479999999999987776 9999987 66665543211
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
.+. .++++...++++..++....+.++++++++..++++++.+.|++.|+++..+. ....
T Consensus 261 ---------------~~~--~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~ 320 (420)
T 3gbx_A 261 ---------------PSA--QGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG---TENH 320 (420)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSS
T ss_pred ---------------CCC--CCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC---CCCe
Confidence 011 22456666666666665544444778899999999999999999888876531 2344
Q ss_pred eEEEEcCC-CCCHHHHHHHHHhhCCeEEccCC------CCCCCcEEEEeecC
Q 017726 308 VTAVIVPS-HINSSEIVRRAWQRYNLSLGLGL------NKVAGKVFRIGHLG 352 (367)
Q Consensus 308 ~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~------~~~~~~~iRi~~~~ 352 (367)
++++.++. +.+...+.+.|. ++||.+.+.. .+..+..+||++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~ 371 (420)
T 3gbx_A 321 LFLLDLVDKNLTGKEADAALG-RANITVNKNSVPNDPKSPFVTSGIRIGSPA 371 (420)
T ss_dssp EEEEECGGGTCCHHHHHHHHH-HTTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred EEEEEcCCCCCCHHHHHHHHH-HCCcEeccccCCCCccccCCCcceEEecch
Confidence 66676643 456777888785 5699998721 12234559999754
No 143
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=225.75 Aligned_cols=282 Identities=12% Similarity=0.074 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHh-----cCC-CCceEEecCChhHHHHHHHHccCCCCC----eEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 42 ALTKTLLEDIKKIF-----KTT-SGTPFLIPTTGTGAWESALTNTLSPGD----RIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 42 ~~~~~~~~~la~~~-----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
....++|+.+++++ |.+ .+++|++|+|+++++..++.+++.+|| .|+++.|.|.++. ..++..|.+++
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~--~~~~~~g~~~v 206 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS--AVISELDAIQV 206 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHH--HHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHH--HHHHHcCCEEE
Confidence 33446666666665 454 345699999999999999999888875 9999999887643 55677899999
Q ss_pred EEeCCCC--CCCCHHHHHHHHhccCCC-CccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee-
Q 017726 112 VVESDWG--EGAKLDVLASKLAADTAH-TIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID- 184 (367)
Q Consensus 112 ~v~~~~~--~~~d~e~l~~~i~~~~~~-~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~- 184 (367)
.++.+++ |.+|++++++++++.... ++++|++++|+||||.+++ +++|.++|++ +|++||+|++|+.+...
T Consensus 207 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~--~~~~li~De~y~~~~~~~ 284 (498)
T 3ihj_A 207 NYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWE--EKLFLLADEVYQDNVYSP 284 (498)
T ss_dssp EEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTTTCBCCT
T ss_pred EeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHH--cCcEEEEEcCccccccCC
Confidence 9998753 588999999999863211 5799999999999999987 5668888999 99999999999764331
Q ss_pred ----eccccc-----------cceEEEecCCCcccCCCc--ceeee---eCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 185 ----FRMDEW-----------GIDVALTGSQKALSLPTG--MGIVC---ASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 185 ----~~~~~~-----------~~d~~~~s~~K~~~g~~g--~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
.++... ...+++.|+||.++|.+| +|+++ .++++++.+.... ..
T Consensus 285 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~---------------~~- 348 (498)
T 3ihj_A 285 DCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL---------------SV- 348 (498)
T ss_dssp TCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH---------------HH-
T ss_pred CCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH---------------hc-
Confidence 111110 113778899999964333 58887 5888887775321 00
Q ss_pred CccCCCCcHHHHHHHHHHHH----------HHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc
Q 017726 245 TFWPYTPSIQLLYGLRAALD----------LIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
...++.....++..++. .+.++ .+++++++.++++++.+.|+++ |+.+..+ .++.++++++
T Consensus 349 ---~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p----~gg~~~~~~l 420 (498)
T 3ihj_A 349 ---RLCPPVSGQAAMDIVVNPPVAGEESFEQFSRE-KESVLGNLAKKAKLTEDLFNQVPGIHCNPL----QGAMYAFPRI 420 (498)
T ss_dssp ---SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHH-HHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBSSEECCEE
T ss_pred ---cCCCCHHHHHHHHHHhcCCccCcccHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcEecCC----CeEEEEEEec
Confidence 11355555555555542 11121 4567788999999999999998 8888776 4555555554
Q ss_pred C-----------CCCCHHHH-HHHHHhhCCeEEccCCCCC---CCcEEEEeec
Q 017726 314 P-----------SHINSSEI-VRRAWQRYNLSLGLGLNKV---AGKVFRIGHL 351 (367)
Q Consensus 314 ~-----------~~~~~~~l-~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~ 351 (367)
. .+.+.+++ +..+++++||.+.+|..+. ...+||+++.
T Consensus 421 ~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~ 473 (498)
T 3ihj_A 421 FIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL 473 (498)
T ss_dssp CCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC
T ss_pred cCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC
Confidence 2 13455554 5666666799999885543 2357999984
No 144
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.96 E-value=3.3e-28 Score=220.53 Aligned_cols=304 Identities=12% Similarity=0.040 Sum_probs=204.4
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
++.++.+|+.|...++++++.+.... ...|.......++++++++++|.+. .++++||++++..++.+++.+||
T Consensus 11 ~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~---~i~~~~G~~a~~~al~~~~~~gd 87 (357)
T 3lws_A 11 QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDD---AVFFPSGTMAQQVALRIWSDETD 87 (357)
T ss_dssp TCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHHHHHT
T ss_pred hhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCc---EEEecCcHHHHHHHHHHHhhcCC
Confidence 45567888888888888777664211 1123223567799999999999754 35558889999999988888888
Q ss_pred --eEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-ccccc---HHH
Q 017726 86 --RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSK 158 (367)
Q Consensus 86 --~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~---~~~ 158 (367)
.|++.++.|++.. ....+...|++++.++. .++.+|+++++++. ++++|++++|+||+ |.+++ +++
T Consensus 88 ~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~~------~~~~v~~~~p~np~~G~~~~~~~l~~ 160 (357)
T 3lws_A 88 NRTVAYHPLCHLEIHEQDGLKELHPIETILVGA-ADRLMTLDEIKALP------DIACLLLELPQREIGGVAPAFSELET 160 (357)
T ss_dssp CCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TTSCCCHHHHHTCC------SCSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred CcEEEecccceeeeeccchhhhccCcEEEEecC-CCCCcCHHHHhcCc------CcceEEEEcccccCCceeCCHHHHHH
Confidence 5665555444432 11234556899888885 45678999998762 36999999999998 98885 888
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCc-----ee-eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICA-----ID-FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~-----~~-~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
|.++|++ +|++||+|++|.... .. .+.. .+.|+++.|+||+++++.| |+++.++++++++....
T Consensus 161 i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~------ 230 (357)
T 3lws_A 161 ISRYCRE--RGIRLHLDGARLFEMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWK------ 230 (357)
T ss_dssp HHHHHHH--TTCEEEEEETTHHHHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHH------
T ss_pred HHHHHHH--cCCEEEEECchhhhhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHH------
Confidence 9999999 999999999876211 11 1111 2478889999999987887 99999999988775321
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCccCCCceEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEEWFSDTVTA 310 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~ 310 (367)
..+ .+. .++.+....+++ ++++. . .+ ..++..++++++.+.|+++ |+++. .+ ...++++
T Consensus 231 ------~~~-~~~--~~~~~~~~~~~~-~~l~~---~-~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~ 291 (357)
T 3lws_A 231 ------RRY-GGD--LISLYPYIVSAD-YYYEL---R-KD-RMGQYYEQAKQLAEQFNALPGVHTTPEV----PVSNMFH 291 (357)
T ss_dssp ------HHT-TCC--CSCCHHHHHHHH-HHHHH---H-TT-CHHHHHHHHHHHHHHHHTSTTEEEESSS----CSSSEEE
T ss_pred ------HHh-cCC--cccchHHHHHHH-HHHHH---H-HH-HHHHHHHHHHHHHHHHHhCCCCeeccCC----CcceEEE
Confidence 001 111 122333222222 33332 1 12 2334677888999999998 88773 33 2345778
Q ss_pred EEcCCC--CCHHHHHHHHHhhCCeEEccCCCCCCC-cEEEEeecC
Q 017726 311 VIVPSH--INSSEIVRRAWQRYNLSLGLGLNKVAG-KVFRIGHLG 352 (367)
Q Consensus 311 ~~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~~~~-~~iRi~~~~ 352 (367)
++++.. .+..++.+.|.++ ||.+++|..+.++ .++|++...
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~-Gi~v~~g~~~~~~~~~~r~~i~~ 335 (357)
T 3lws_A 292 LHFDGQAADISPKLEQVQEET-GLGFVGYLVDKDGYCSTEISVGD 335 (357)
T ss_dssp EEEESCHHHHHHHHHHHHHHH-CEESCSCCEECSSEEEEEEEBCT
T ss_pred EEecCChHHHHHHHHHHHHhc-CeEEecccccCCCceEEEEEecc
Confidence 887532 2256788888655 9999998544333 369998643
No 145
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.96 E-value=3.6e-27 Score=219.93 Aligned_cols=311 Identities=15% Similarity=0.122 Sum_probs=215.8
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCC-----------CCcHHHHHHHHH-HHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAVPALTKTLL-EDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~~~~~-~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.+.+.+++.++++++++++.+...... +.......+++. +++++++|.+. ..++++||++|+..++
T Consensus 47 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~~a~ 124 (447)
T 3h7f_A 47 TLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANAAVL 124 (447)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred ceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHHHHH
Confidence 455677888889999999987543111 111222334555 99999999875 3454788999999999
Q ss_pred HccCCCCCeEEEEeCCcchHH---HHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLL---WIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
.+++++||+|++..+.|.++. ........+..+..++.+ .++.+|++++++++.+ .++++|++++++||++.
T Consensus 125 ~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~i~~~~~~~~~~~- 200 (447)
T 3h7f_A 125 HALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALE---FRPKVIIAGWSAYPRVL- 200 (447)
T ss_dssp HHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHH---HCCSEEEEECSSCCSCC-
T ss_pred HHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHh---cCCeEEEEcCCCCCCcc-
Confidence 999999999999999876621 100112234556666665 4567899999999965 35689999999998876
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
++++|.++|++ +|+++|+|++|..+.. ..+.. .++|+++.|+||+++|+.| |++++++++++.+.....+
T Consensus 201 -~l~~i~~l~~~--~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~- 274 (447)
T 3h7f_A 201 -DFAAFRSIADE--VGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP- 274 (447)
T ss_dssp -CHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT-
T ss_pred -CHHHHHHHHHH--cCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC-
Confidence 99999999999 9999999999864321 11111 2579999999999988876 9999999887776532111
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-----CCccccCCCccC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-----GLKNCTQKEEWF 304 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~ 304 (367)
+. .++++...++++.+++....+.++++..++..++++++.+.|++. |+++..+. .
T Consensus 275 --------------~~--~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~---~ 335 (447)
T 3h7f_A 275 --------------GQ--QGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG---T 335 (447)
T ss_dssp --------------TT--CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS---C
T ss_pred --------------cc--cCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC---C
Confidence 11 234555556777777776555447788899999999999999887 88876521 1
Q ss_pred CCceEEEEcC-CCCCHHHHHHHHHhhCCeEEc----cC--CCCCCCcEEEEeecC
Q 017726 305 SDTVTAVIVP-SHINSSEIVRRAWQRYNLSLG----LG--LNKVAGKVFRIGHLG 352 (367)
Q Consensus 305 ~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~----~g--~~~~~~~~iRi~~~~ 352 (367)
...++++.+. .+.+...+.+.| ++.||.+. ++ ..+..+..+||++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l-~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~ 389 (447)
T 3h7f_A 336 DVHLVLVDLRDSPLDGQAAEDLL-HEVGITVNRNAVPNDPRPPMVTSGLRIGTPA 389 (447)
T ss_dssp SSSEEEEECTTSSCCHHHHHHHH-HHTTEECBC-------------CEEEEECHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHH-HHCCeEEecccCCCCCCCCCCCCceeccCHH
Confidence 3345666663 244666666666 55699998 55 445556779998643
No 146
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.96 E-value=1.7e-27 Score=222.24 Aligned_cols=315 Identities=10% Similarity=0.018 Sum_probs=211.7
Q ss_pred ccccCCCCCChHHHHHHHccCC----CCCCCCcHHHHHHHHHHHHHHHh-cCCC----CceEEe--cCChhHHHHH--HH
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNN----EDYRSPAVPALTKTLLEDIKKIF-KTTS----GTPFLI--PTTGTGAWES--AL 77 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~----~~~~~~~~~~~~~~~~~~la~~~-~~~~----~~~v~~--~~ggt~al~~--~~ 77 (367)
|++.++|+++.+++.+++.+.. .....|.......++|+.+++++ |.+. +++|++ |+||++|+.+ .+
T Consensus 59 ~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~ 138 (448)
T 3meb_A 59 YRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEF 138 (448)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHH
T ss_pred ccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHH
Confidence 4466788888999999944322 11222333344678999999988 7662 346899 9999999987 44
Q ss_pred HccCCCCCeEEEEeCCcchHHHHHHHH----HhCCceEEEeC-CCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCc
Q 017726 78 TNTLSPGDRIISFLIGQFSLLWIDQQQ----RLNFNVDVVES-DWG--EGAKLDVLASKLAADTAHTIKAICIVHNETAT 150 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~----~~g~~~~~v~~-~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t 150 (367)
.+++.+||+|++++|.|.++. ..++ ..|.+++.++. +.+ +.+|+|++++++++.+ ++++++++++|+|||
T Consensus 139 ~~~~~~gd~Vlv~~p~~~~~~--~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~-~~~~~v~~~~p~NPt 215 (448)
T 3meb_A 139 LHLWMPKAEFYMPSTTWPNHY--GIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP-EKSIFLFHACAHNPS 215 (448)
T ss_dssp HHHHCTTCCEEEESSCCTHHH--HHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSC-TTCEEEEESSSCTTT
T ss_pred HHHhCCCCEEEECCCCCHhHH--HHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCC-CCcEEEEeCCCCCCC
Confidence 566789999999999887753 4466 78999999998 554 7899999999998643 356888999999999
Q ss_pred cccccH---HHHHHHHHhcCCCcEEEEeeeeccCcee-e-----cc----ccccceEEEecCCCcccCCCc--ceee--e
Q 017726 151 GVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID-F-----RM----DEWGIDVALTGSQKALSLPTG--MGIV--C 213 (367)
Q Consensus 151 G~~~~~---~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~-----~~----~~~~~d~~~~s~~K~~~g~~g--~g~~--~ 213 (367)
|.+++. ++|.++|++ +|+++++|++|..+... . .. ......+++.|+||.++ ++| +|++ +
T Consensus 216 G~~~~~~~l~~i~~l~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~v 292 (448)
T 3meb_A 216 GIDFTEAQWKELLPIMKE--KKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFG-LYGERIGCLHVV 292 (448)
T ss_dssp CCCCCHHHHHHHHHHHHH--HTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCCEEEEEE
T ss_pred CcCCCHHHHHHHHHHHHH--CCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCC-Cccccceeeeee
Confidence 999875 458899999 99999999998754321 1 01 11234578999999984 555 6887 5
Q ss_pred e--------C-H----HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH---H--hChHHHH
Q 017726 214 A--------S-P----KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF---E--EGLENVI 275 (367)
Q Consensus 214 ~--------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~---~--~g~~~~~ 275 (367)
+ + + ++++.+... .. .. ..+++.....++..++.... + ..+++++
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~l~~~---------------~~-~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~ 354 (448)
T 3meb_A 293 HAGVEGSVEKNKALSAAMVSGMTLQ---------------IR-KT--WSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMS 354 (448)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHHHH---------------HH-TT--TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred eccccccccCCHHHHHHHHHHHHHH---------------Hh-cc--cCCccHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 5 3 4 333333211 01 11 12344544444444443211 1 2267888
Q ss_pred HHHHHHHHHHHHHHHHcC---------CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEE
Q 017726 276 ERHRRLGKATRLAVEAWG---------LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF 346 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~i 346 (367)
+++.++++++.+.|+++| +....+ ..+.+.+..+ + .++++.|.+++||.+.+|. .
T Consensus 355 ~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~----~-~~~~~~ll~~~gV~v~~G~-------g 418 (448)
T 3meb_A 355 ARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT----AIGMFTFTGL----T-PEHVDYLKEKWSIYLVKAG-------G 418 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH----CCSSEEECCC----C-HHHHHHHHHHHCEEECSGG-------G
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCcccccceeCC----CceEEEecCC----C-HHHHHHHHHhCCEEEeCCC-------c
Confidence 899999999999999874 333333 3443443333 3 4677777777799998864 2
Q ss_pred EEeecC-CCCHHHHHHhhhh
Q 017726 347 RIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 347 Ri~~~~-~~~~~~~~~~~l~ 365 (367)
||++.+ ..++.+...+.|.
T Consensus 419 Ris~a~~~~~~i~~~~~~l~ 438 (448)
T 3meb_A 419 RMSMCGLTESNCDYVAEAIH 438 (448)
T ss_dssp EEEGGGCCTTTHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHH
Confidence 998765 4444555555544
No 147
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.96 E-value=1.4e-27 Score=220.73 Aligned_cols=311 Identities=12% Similarity=-0.017 Sum_probs=211.8
Q ss_pred CCChHHHHHHHccCC--C-CCCCCcHHHHHHHHHHHHHHHh-cCC----CCceEEe--cCChhHHHHHHHH--ccCCCC-
Q 017726 18 VHIPDQVIRAMNRNN--E-DYRSPAVPALTKTLLEDIKKIF-KTT----SGTPFLI--PTTGTGAWESALT--NTLSPG- 84 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~--~-~~~~~~~~~~~~~~~~~la~~~-~~~----~~~~v~~--~~ggt~al~~~~~--~~~~~g- 84 (367)
.++++.+.+++.+.. . ....|.......++|+.+++++ +.. .+++|++ |+||++|+..++. .++.+|
T Consensus 47 ~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~ 126 (412)
T 1ajs_A 47 PWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGT 126 (412)
T ss_dssp CCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSS
T ss_pred ccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCc
Confidence 456688888887753 1 1222333345678999999999 431 2345899 9999999999853 456789
Q ss_pred ----CeEEEEeCCcchHHHHHHHHHhCCc-eEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 85 ----DRIISFLIGQFSLLWIDQQQRLNFN-VDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 85 ----d~vl~~~~~~~~~~~~~~~~~~g~~-~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
|+|+++.|+|++.. ..++..|.+ ++.++.. .++.+|++++++++++.. ++++++++++|+||||.+++
T Consensus 127 ~~~~d~Vl~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~~~~ 203 (412)
T 1ajs_A 127 NNKDTPVYVSSPTWENHN--GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP-EFSIFVLHACAHNPTGTDPTPE 203 (412)
T ss_dssp SCCCSCEEEEESCCTHHH--HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEESSSCTTTCCCCCHH
T ss_pred CCCCCeEEEcCCCcHHHH--HHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCC-CCcEEEEECCCCCCCCCCCCHH
Confidence 99999999888753 557778999 9999883 456789999999998643 36688889999999999986
Q ss_pred -HHHHHHHHHhcCCCcEEEEeeeeccCcee--------ec-cc-cccceEEEecCCCcccCCCc--ceeeee---CHHHH
Q 017726 156 -LSKVRKLLDEYRHPALFLVDGVSSICAID--------FR-MD-EWGIDVALTGSQKALSLPTG--MGIVCA---SPKAL 219 (367)
Q Consensus 156 -~~~i~~~~~~~~~~~~vi~D~~~~~~~~~--------~~-~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~ 219 (367)
+++|.++|++ +|+++|+|++|...... +. .. ....++++.|+||.++ ++| +|++++ +++..
T Consensus 204 ~l~~l~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~ 280 (412)
T 1ajs_A 204 QWKQIASVMKR--RFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG-LYNERVGNLTVVAKEPDSI 280 (412)
T ss_dssp HHHHHHHHHHH--HTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCEEEEEEECSSHHHH
T ss_pred HHHHHHHHHHH--CCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccC-CCCcceEEEEEecCCHHHH
Confidence 5578899999 99999999997644321 11 11 1234588999999985 556 699998 88754
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC-
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG- 293 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g- 293 (367)
+.+... .......+ ..+++...+.++.++++... +..+++++++++++++++.+.|++++
T Consensus 281 ~~~~~~------------~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 346 (412)
T 1ajs_A 281 LRVLSQ------------MQKIVRVT--WSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT 346 (412)
T ss_dssp HHHHHH------------HHHHHHTT--TSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHH------------HHHHHhcc--cCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 443210 00101111 11245555556666666432 22467888999999999999999976
Q ss_pred ---CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 294 ---LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
+.+..+ ..+.++++.+ + .++...+.+++||.+.++ +||++.. ..++.+...+.|.
T Consensus 347 ~~~~~~~~~----~~~~~~~~~~----~-~~~~~~~l~~~gv~v~~~--------~Ris~~~~~~~~i~~~~~~l~ 405 (412)
T 1ajs_A 347 PGTWNHITD----QIGMFSFTGL----N-PKQVEYLINQKHIYLLPS--------GRINMCGLTTKNLDYVATSIH 405 (412)
T ss_dssp SSCCHHHHH----CCSSEEECCC----C-HHHHHHHHHTTCEECCTT--------SEEEGGGCCTTTHHHHHHHHH
T ss_pred CCCeeEEcC----CCceEEEeCC----C-HHHHHHHHHhCCEEecCC--------cEEEeeeCCHHHHHHHHHHHH
Confidence 666554 3444444433 3 345555556679999864 5998763 4555555555443
No 148
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.96 E-value=4.9e-28 Score=225.32 Aligned_cols=270 Identities=12% Similarity=0.050 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC--CCC-
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWG- 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~- 118 (367)
....++++.+++ +|.+ +++++++|+|+++..++.+++.+||+|+++.+.|++.. ..+...|++++.++. +.+
T Consensus 57 ~~~~~~~~~la~-~g~~--~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~--~~~~~~G~~~~~v~~~~~~~~ 131 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY--DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVL--HALDISQQEGHFIETHQSPLT 131 (446)
T ss_dssp SHHHHHHHHHCS-CTTE--EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHH--HHHHHHTCCEEECEEEECTTT
T ss_pred hHHHHHHHHHHh-cCCC--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHH--HHHHHcCCeEEEEeCeecccc
Confidence 567899999999 9987 46899999999999999999999999999999888764 345668999999887 544
Q ss_pred ---CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccc
Q 017726 119 ---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEW 190 (367)
Q Consensus 119 ---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~ 190 (367)
+.+|++++ +. +++++|++++ +|++|.+.|+++|.++|++ +|+++++|++|+. .. +.+....
T Consensus 132 ~~~~~~d~~~l---~~----~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~--~~~~livDea~~~-~~~f~~~~~~~~~~ 200 (446)
T 2x3l_A 132 NHYNKVNLSRL---NN----DGHKLVVLTY-PNYYGETFNVEEVIKSLHQ--LNIPVLIDEAHGA-HFGLQGFPDSTLNY 200 (446)
T ss_dssp SSEEEEEC--------------CCEEEEES-SCTTSCCCCHHHHHHHHHH--TTCCEEEECTTCT-TTTSTTSCCCGGGG
T ss_pred CcCCCCCHHHH---cC----CCceEEEEEC-CCCCeEecCHHHHHHHHHh--cCCeEEEcchhhh-hhccCCCCCChHHc
Confidence 45788877 33 4679999999 6679999999999999999 9999999999886 22 3344445
Q ss_pred cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC
Q 017726 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG 270 (367)
Q Consensus 191 ~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g 270 (367)
++|+++.|+||+++++.|+|+++++++.++ .... ......+. .++++...++++.++++.+.+.|
T Consensus 201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~---------~~~~~~~~-----~~s~~~~~~aal~~a~~~l~~~g 265 (446)
T 2x3l_A 201 QADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENI---------IEYLSYFQ-----TSSPSYLIMASLESAAQFYKTYD 265 (446)
T ss_dssp TCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHH---------HHHHHHHS-----CSSCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEECCccccccccccEEEEEcCCcCC-HHHH---------HHHHHHHc-----CCCchHHHHHHHHHHHHHHHHhC
Confidence 789999999999988888999999877543 1110 00011122 33578888888888899888887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc-cCCCCCCCcEEEEe
Q 017726 271 LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-LGLNKVAGKVFRIG 349 (367)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~-~g~~~~~~~~iRi~ 349 (367)
.+++.++..++++++++. |+++..+. ....+++.++ +.+..++.+.|.++ ||.+. +|. .++|++
T Consensus 266 ~~~~~~~~~~l~~~l~~~----g~~~~~~~----~~~~l~i~~~-~~~~~~l~~~L~~~-GI~v~~~g~-----~~iRi~ 330 (446)
T 2x3l_A 266 STLFFAKRAQLIECLENK----GFEMLQVD----DPLKLLIKYE-GFTGHDIQNWFMNA-HIYLELADD-----YQALAI 330 (446)
T ss_dssp CHHHHHHHHHHHHHHHHH----TCEEEECS----STTEEEEECT-TSCHHHHHHHHHHT-TEEESEECS-----SCEEEE
T ss_pred HHHHHHHHHHHHHHHHHc----CCEECcCC----CCeEEEEEeC-CcCHHHHHHHHHHC-CCEEEecCC-----CEEEEE
Confidence 666778888888887776 77776642 2235778875 67888999999876 99987 432 569999
Q ss_pred ecCCCCHH
Q 017726 350 HLGHLNEV 357 (367)
Q Consensus 350 ~~~~~~~~ 357 (367)
+....+.+
T Consensus 331 ~~~~~t~e 338 (446)
T 2x3l_A 331 LPLWHHDD 338 (446)
T ss_dssp CCCCCTTC
T ss_pred eecCCCHH
Confidence 86544433
No 149
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.96 E-value=7.2e-28 Score=222.61 Aligned_cols=309 Identities=11% Similarity=0.010 Sum_probs=210.2
Q ss_pred CCCCChHHHHHHHcc-CCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEe--cCChhHHHHHHH--HccCCC
Q 017726 16 GPVHIPDQVIRAMNR-NNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLI--PTTGTGAWESAL--TNTLSP 83 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~-~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~ggt~al~~~~--~~~~~~ 83 (367)
++.++++.+.+++.+ .... ...|.......++|+.++++++.. .+++|++ |+||++|+.+++ ...+.+
T Consensus 44 ~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~ 123 (412)
T 1yaa_A 44 GKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFP 123 (412)
T ss_dssp SCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCC
Confidence 334677889998887 5431 112322344678999999998431 2345899 999999999873 344579
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-C-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-D-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
||+|+++.|.|++.. ..++..|.+++.++. + .++.+|++++++++++.. ++++++++++|+||||.+++ +++
T Consensus 124 gd~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~~~p~nPtG~~~~~~~l~~ 200 (412)
T 1yaa_A 124 DKLVYLSKPTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP-EGSIFVLHSCAHNPTGLDPTSEQWVQ 200 (412)
T ss_dssp TCCEEEEESCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEECSSCTTTCCCCCHHHHHH
T ss_pred CCEEEEeCCCCccHH--HHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHH
Confidence 999999999888753 557778999999998 4 367789999999998642 12455566999999999986 556
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCce--------ee-cccccc----ceEEEecCCCcccCCCc--ceeee--e-----CH
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAI--------DF-RMDEWG----IDVALTGSQKALSLPTG--MGIVC--A-----SP 216 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~--------~~-~~~~~~----~d~~~~s~~K~~~g~~g--~g~~~--~-----~~ 216 (367)
|.++|++ +|+++|+|++|..... ++ ++...+ .++++.|+||.++ ++| +|+++ + ++
T Consensus 201 l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~GlriG~~~~~~~~~~~~~ 277 (412)
T 1yaa_A 201 IVDAIAS--KNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNK 277 (412)
T ss_dssp HHHHHHH--TTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHH
T ss_pred HHHHHHH--CCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCC-CcCCcceEEEEEecCCCCCH
Confidence 8888999 9999999999864322 11 221112 4688999999984 666 59888 6 55
Q ss_pred H----HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHH
Q 017726 217 K----ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRL 287 (367)
Q Consensus 217 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~ 287 (367)
+ +++++... .. .. ..+++.....++..+++... +..+++++++++++++++.+
T Consensus 278 ~~~~~l~~~l~~~---------------~~-~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (412)
T 1yaa_A 278 TIKPAVTSQLAKI---------------IR-SE--VSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRD 339 (412)
T ss_dssp HHHHHHHHHHHHH---------------HH-TT--TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------Hh-hc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 44444321 01 11 12345555556666665432 22478889999999999999
Q ss_pred HHHHcC----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHh
Q 017726 288 AVEAWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQ 362 (367)
Q Consensus 288 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~ 362 (367)
.|++++ +++..+ .++.++++. .+...+ ..+.+++||.+.+ .+||++.. ..++.+...+
T Consensus 340 ~L~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~-~~~l~~~gi~v~~--------~~Ris~~~~~~~~i~~~~~ 402 (412)
T 1yaa_A 340 HLVKLGTPGNWDHIVN----QCGMFSFTG----LTPQMV-KRLEETHAVYLVA--------SGRASIAGLNQGNVEYVAK 402 (412)
T ss_dssp HHHHHTCSSCCTHHHH----CCSSEEECC----CCHHHH-HHHHHHHCEECCT--------TSEEEGGGCCTTTHHHHHH
T ss_pred HHHhhCCCCCeeeecc----CceEEEeeC----CCHHHH-HHHHHhCCEEecc--------CcEEEEccCCHhHHHHHHH
Confidence 999976 777665 344444332 345566 5555566999876 47999764 4455555555
Q ss_pred hhh
Q 017726 363 LLF 365 (367)
Q Consensus 363 ~l~ 365 (367)
+|+
T Consensus 403 ~l~ 405 (412)
T 1yaa_A 403 AID 405 (412)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 150
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.96 E-value=2.6e-27 Score=219.22 Aligned_cols=307 Identities=14% Similarity=0.109 Sum_probs=206.1
Q ss_pred cCCCCCChHHHHHHHccCCCC---C-CC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCe
Q 017726 14 VPGPVHIPDQVIRAMNRNNED---Y-RS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDR 86 (367)
Q Consensus 14 ~~~p~~~~~~v~~a~~~~~~~---~-~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~ 86 (367)
.|.+.++++++.+++.+.... . .+ .+..+..+++++.+++++|.+ + +++++||++|+..++.++ +.+||+
T Consensus 8 ~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~-~i~~~~gt~al~~~~~~~~~~~gd~ 84 (418)
T 2c81_A 8 WPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP--Y-CVPTTSGSTALMLALEALGIGEGDE 84 (418)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC--c-EEEeCCHHHHHHHHHHHcCCCCcCE
Confidence 355566778888888764321 1 11 112344789999999999987 3 677888999999999998 899999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
|+++.++|++.. ..++..|++++.++.+. ++.+|+++++++++ +++++|+++ ||||...|+++|.++|++
T Consensus 85 Vl~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~---~~~G~~~~~~~i~~~~~~ 155 (418)
T 2c81_A 85 VIVPSLTWIATA--TAVLNVNALPVFVDVEADTYCIDPQLIKSAIT----DKTKAIIPV---HLFGSMANMDEINEIAQE 155 (418)
T ss_dssp EEEESSSCTHHH--HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCC----TTEEEECCB---CCTTCCCCHHHHHHHHHH
T ss_pred EEECCCccHhHH--HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhC----CCCeEEEEe---CCcCCcccHHHHHHHHHH
Confidence 999999988764 45677899999999876 67899999999987 467888764 589999999999999999
Q ss_pred cCCCcEEEEeeeeccCce-ee-ccccc-cceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCCceee-chHH-HHH
Q 017726 166 YRHPALFLVDGVSSICAI-DF-RMDEW-GIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFF-DWKD-YIK 239 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~-~~-~~~~~-~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~ 239 (367)
+|++||+|++|+.+.. .. ..... .+++.++|+||+++++ .+|+++.+ +++++++.......... .+.. ...
T Consensus 156 --~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (418)
T 2c81_A 156 --HNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMH 232 (418)
T ss_dssp --TTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCT
T ss_pred --CCCEEEEECcccccCccCCEecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCcccccccccccc
Confidence 9999999999998763 11 11111 1444444559999753 56888884 77777665432211110 0000 000
Q ss_pred Hhh--cC--CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccC-CC-ccCCCceEEEE
Q 017726 240 FYN--LG--TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQ-KE-EWFSDTVTAVI 312 (367)
Q Consensus 240 ~~~--~~--~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~-~~~~~~~~~~~ 312 (367)
.+. .+ ......... ..+.+++......+++++.++..++++++.+.|+++ |+.+..+ .. ....+.++.+.
T Consensus 233 ~~~~~~~~~~~~g~~~~~---~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (418)
T 2c81_A 233 GDMQLVKKGDIQGSNYCL---SEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFR 309 (418)
T ss_dssp TCBSEEECCSSCCCBCCC---CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEE
T ss_pred chhhccccccccCcCCCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEE
Confidence 011 00 000000000 112334443333457788888899999999999887 8777643 22 12233456577
Q ss_pred cCC----CCCHHHHHHHHHhhCCeE---EccCC
Q 017726 313 VPS----HINSSEIVRRAWQRYNLS---LGLGL 338 (367)
Q Consensus 313 ~~~----~~~~~~l~~~L~~~~gv~---v~~g~ 338 (367)
+++ +.+..++.+.|.+++||. +.++.
T Consensus 310 ~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~ 342 (418)
T 2c81_A 310 FDPVKFGGLNADQFCEILREKLNMGTFYLHPPY 342 (418)
T ss_dssp ECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCC
T ss_pred EccccccccCHHHHHHHHHHcCCCCcccccccc
Confidence 753 568889999998666999 88765
No 151
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.96 E-value=2e-26 Score=211.94 Aligned_cols=244 Identities=16% Similarity=0.092 Sum_probs=178.1
Q ss_pred cccCCCCCChHHHHHHHccCCCC--CCCC--cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 12 LFVPGPVHIPDQVIRAMNRNNED--YRSP--AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 12 ~~~~~p~~~~~~v~~a~~~~~~~--~~~~--~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.+.|+.+.+++.+++..+... ...+ ...+...++++.+++++|.+ + .++++||++|+..++.+++.+||+|
T Consensus 30 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~--~-~i~~~sG~~a~~~~l~~~~~~gd~v 106 (398)
T 2rfv_A 30 PIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE--A-GLATASGISAITTTLLTLCQQGDHI 106 (398)
T ss_dssp CCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred CCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC--c-EEEECCHHHHHHHHHHHHhCCCCEE
Confidence 45566777777777776622111 1111 13467889999999999976 3 5666778899999999888999999
Q ss_pred EEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 88 ISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 88 l~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
++..+.|++.. +...++..|.+++.++.+ |+++++++++ +++++|++++|+||||.+.|+++|.++|++
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 177 (398)
T 2rfv_A 107 VSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMR----PETKVVYIETPANPTLSLVDIETVAGIAHQ 177 (398)
T ss_dssp EEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC----TTEEEEEEESSBTTTTBCCCHHHHHHHHHH
T ss_pred EEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcC----CCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 99999888764 223347789999999875 7999999987 467999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCc--ceeeeeCHHHHH-HhccCCCCceeechHHHHHHhh
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+|+++|+|++|+.+...... ..++|+++.|+||+++++.+ .|++++++++++ .+.... ..++
T Consensus 178 --~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~------------~~~~ 242 (398)
T 2rfv_A 178 --QGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL------------KDIT 242 (398)
T ss_dssp --TTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH------------HHTT
T ss_pred --cCCEEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHH------------HhCC
Confidence 99999999999876643322 34789999999999976654 499999998876 443210 0000
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
+ ++.+.....+..++++. +....++..++.+.+.+.|++.
T Consensus 243 -~----~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~ 282 (398)
T 2rfv_A 243 -G----GCMSPFNAWLTLRGVKT-----LGIRMERHCENALKIARFLEGH 282 (398)
T ss_dssp -C----CCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred -C----CCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHcC
Confidence 1 13555444444445543 3344555667778888888764
No 152
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.96 E-value=1.6e-27 Score=216.82 Aligned_cols=324 Identities=13% Similarity=0.067 Sum_probs=222.9
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIIS 89 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~ 89 (367)
+.+.+++.++++++.+++.+...... +.......++++.+++++|.+ .+++++|||+|+..++.++ +.+||+|++
T Consensus 5 ~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~~~~~sGt~al~~al~~~~~~~gd~Vi~ 80 (367)
T 3nyt_A 5 IDLKNQQARIKDKIDAGIQRVLRHGQ-YILGPEVTELEDRLADFVGAK---YCISCANGTDALQIVQMALGVGPGDEVIT 80 (367)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHCC-CSSCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccccccccccCHHHHHHHHHHHhcCC-ccCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhCCCCcCEEEE
Confidence 34555666788888888887543322 223366889999999999976 3899999999999999988 899999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH 168 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~ 168 (367)
+.+.|++.. ..++..|++++.++.+++ +.+|+++++++++ +++++|+ ++||+|...|+++|.++|++ +
T Consensus 81 ~~~~~~~~~--~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~---~~~~~G~~~~~~~i~~la~~--~ 149 (367)
T 3nyt_A 81 PGFTYVATA--ETVALLGAKPVYVDIDPRTYNLDPQLLEAAIT----PRTKAII---PVSLYGQCADFDAINAIASK--Y 149 (367)
T ss_dssp ESSSCTHHH--HHHHHTTCEEEEECBCTTTCSBCGGGTGGGCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH--T
T ss_pred CCCccHHHH--HHHHHcCCEEEEEecCCccCCcCHHHHHHhcC----cCCcEEE---eeCCccChhhHHHHHHHHHH--c
Confidence 999888754 446778999999999865 7889999999986 4678887 77899999999999999999 9
Q ss_pred CcEEEEeeeeccCceeeccccccc--eEEEec--CCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAIDFRMDEWGI--DVALTG--SQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~~~~~~~~~--d~~~~s--~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++|+|++|+.+.. .+....+. |++++| ++|+++++...|+++. ++++.+++......+....+ .....
T Consensus 150 ~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~----~~~~~ 224 (367)
T 3nyt_A 150 GIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRY----HHIRV 224 (367)
T ss_dssp TCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETT----EECSC
T ss_pred CCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCc----eeecc
Confidence 999999999987664 23222233 899998 5899965233577777 46777766543322111000 00001
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCC-CccCCCceEEEEcCCCCCHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK-EEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 322 (367)
|. .+..+....++....+ ..+++..++.+++++++.+.|++.++.+.... .......++.+..+ +.+++
T Consensus 225 g~--~~~~~~~~aa~~~~~l-----~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l 294 (367)
T 3nyt_A 225 GV--NSRLDTLQAAILLPKL-----EIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---NRESV 294 (367)
T ss_dssp CC--BCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---SHHHH
T ss_pred Cc--CCCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---CHHHH
Confidence 11 2233432222222222 23567778889999999999999875543321 11233344556553 67889
Q ss_pred HHHHHhhCCeEEccCCC-CC------C-------------CcEEEEeecCCCCHHHH--HHhhhh
Q 017726 323 VRRAWQRYNLSLGLGLN-KV------A-------------GKVFRIGHLGHLNEVMF--NFQLLF 365 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~-~~------~-------------~~~iRi~~~~~~~~~~~--~~~~l~ 365 (367)
.+.|.++ ||.++.++. +. . ...+|+.++...+++|+ ..+.|.
T Consensus 295 ~~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~ 358 (367)
T 3nyt_A 295 QASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALT 358 (367)
T ss_dssp HHHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 9999766 999987654 11 0 23699998877776554 444444
No 153
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.96 E-value=4.4e-27 Score=216.36 Aligned_cols=321 Identities=14% Similarity=0.025 Sum_probs=219.9
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeE
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRI 87 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~v 87 (367)
..+.+..|..+.++.+.+++.+..... .+.......++++.+++++|.+ .+++++||++|+..++.++ +.+||+|
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~-~y~~~~~~~~l~~~la~~~~~~---~~v~~~~Gt~a~~~~l~~~~~~~gd~v 106 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG-RYLLGPELEGFEAEFAAYCETD---HAVGVNSGMDALQLALRGLGIGPGDEV 106 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT-CCSSSHHHHHHHHHHHHHTTSS---EEEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHHHHCCC---eEEEecCHHHHHHHHHHHhCCCCcCEE
Confidence 345666777777788999988754322 1222366789999999999976 3678889999999999998 8999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
+++.++|++.. ..++..|++++.++.++ ++.+|+++++++++ +++++|+ ++||||.+.|+++|.++|++
T Consensus 107 l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~---~~n~tG~~~~l~~i~~l~~~- 176 (399)
T 2oga_A 107 IVPSHTYIASW--LAVSATGATPVPVEPHEDHPTLDPLLVEKAIT----PRTRALL---PVHLYGHPADMDALRELADR- 176 (399)
T ss_dssp EEESSSCTHHH--HHHHHTTCEEEEECBCSSSSSBCHHHHHHHCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH-
T ss_pred EECCCccHHHH--HHHHHCCCEEEEEecCCCCCCcCHHHHHHhcC----CCCeEEE---EeCCcCCccCHHHHHHHHHH-
Confidence 99999888743 45677899999999876 46789999999997 4668777 46899999999999999999
Q ss_pred CCCcEEEEeeeeccCceeecccccc--ceEEEecC--CCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHh
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWG--IDVALTGS--QKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~--~d~~~~s~--~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+++|+|++|+.+... +....+ .|++++|+ +|+++++..+|+++.+ +++++++.......... .+
T Consensus 177 -~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~-------~~ 247 (399)
T 2oga_A 177 -HGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQ-------KY 247 (399)
T ss_dssp -HTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSS-------TT
T ss_pred -cCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccc-------cc
Confidence 99999999999877542 332223 68999998 6999642235888875 78877665422111100 01
Q ss_pred hcCC-ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCH
Q 017726 242 NLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 242 ~~~~-~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
.... -+.+..+....+++.++++. ++++.++..++++++.+.|+++ |+.+...... .....+.+.+ ...+.
T Consensus 248 ~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~~-~~~~~ 320 (399)
T 2oga_A 248 SHETKGTNSRLDEMQAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPD-TDPVWHLFTV-RTERR 320 (399)
T ss_dssp CCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTT-EECCCSSEEE-ECSSH
T ss_pred cccccccCCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCC-CcceeEEEEE-ECCCH
Confidence 1000 01234555544444445544 3455667788899999999887 7766432111 1111111333 12367
Q ss_pred HHHHHHHHhhCCeEEccCCC-CC----------------C------CcEEEEeecCCCCHHHHH
Q 017726 320 SEIVRRAWQRYNLSLGLGLN-KV----------------A------GKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~-~~----------------~------~~~iRi~~~~~~~~~~~~ 360 (367)
.++.+.|.+ +||.+++++. +. + ...+||++....+.+|+.
T Consensus 321 ~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~ 383 (399)
T 2oga_A 321 DELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQAL 383 (399)
T ss_dssp HHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHH
T ss_pred HHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHH
Confidence 889999975 5999987652 10 0 257999987766655443
No 154
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.96 E-value=5.9e-28 Score=219.03 Aligned_cols=303 Identities=12% Similarity=0.056 Sum_probs=204.6
Q ss_pred CcccccCCCCCC--hHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVPGPVHI--PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~~p~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+..+..+|+.++ ++++++++.+.... ..+.......++++++++++|.+. .++++||++|+..++.+++.+||+
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~---~i~~~~g~~a~~~a~~~~~~~g~~ 89 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNLES-DIYGNGAVIEDFETKIAKILGKQS---AVFFPSGTMAQQIALRIWADRKEN 89 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTCBC-CBTTBSHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHHHHHTC
T ss_pred chhhcCCCccccCCCHHHHHHHHhhccc-CcccCCHHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHHhcCCC
Confidence 344555665555 88999999885432 223334678899999999999865 255588999999999888888887
Q ss_pred -EEE-EeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-cccccHHHH---
Q 017726 87 -IIS-FLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNNLSKV--- 159 (367)
Q Consensus 87 -vl~-~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~~~~i--- 159 (367)
+++ ..+.|++.. ....+...|.+++.++. .++.+|+++++++ . +++++|++++|+||+ |.++|.+++
T Consensus 90 ~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~----~~~~~v~~~~p~n~~~G~~~~~~~l~~l 163 (359)
T 3pj0_A 90 RRVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-R----EPVSSVLIELPQREIGGQLPAFEELEKI 163 (359)
T ss_dssp CEEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-S----SCCSEEEEESSBGGGTSBCCCHHHHHHH
T ss_pred cEEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-c----CCceEEEEEecccCCCcccCCHHHHHHH
Confidence 444 434333322 12233557999999987 4678999999987 3 578999999999998 688876555
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
.++|++ +|++||+|+++..+... .+.. .+.|+++.|+||+++++.| |+++.++++++++....
T Consensus 164 ~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~------- 232 (359)
T 3pj0_A 164 SEYCHE--QGISLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWK------- 232 (359)
T ss_dssp HHHHHH--HTCEEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHH-------
T ss_pred HHHHHH--cCCEEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHH-------
Confidence 999999 99999999987654321 1111 3578999999999987766 89999999988775321
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCccCCCceEEE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEEWFSDTVTAV 311 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~ 311 (367)
....+. .+..+....+++ .+++. . + +..++..++++++.+.|+++ |+++. .+ ....++++
T Consensus 233 ------~~~~~~--~~~~~~~~~a~~-~~l~~---~-~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~ 294 (359)
T 3pj0_A 233 ------RRYGGD--LISLYPYILSAD-YYFEK---R-I-GKMAEYFEAAKGLAERFNSCSGVKTVPEV----PVSNMFHV 294 (359)
T ss_dssp ------HHTTCC--CSCCHHHHHHHH-HHHHH---H-G-GGHHHHHHHHHHHHHHHHTSTTEEEESSS----CSSSEEEE
T ss_pred ------HHhCCC--cchhHHHHHHHH-HHHHH---H-H-HHhHHHHHHHHHHHHHHhhCCCceeeccC----CcceEEEE
Confidence 001111 122333222222 22322 1 2 33445688899999999998 88774 23 23346777
Q ss_pred EcCCC--CCHHHHHHHHHhhCCeEEccCCCCC-C-CcEEEEeec
Q 017726 312 IVPSH--INSSEIVRRAWQRYNLSLGLGLNKV-A-GKVFRIGHL 351 (367)
Q Consensus 312 ~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~~-~-~~~iRi~~~ 351 (367)
+++.. .+..++.+.|.++ ||.+.+|..+. . ..++|+++.
T Consensus 295 ~~~~~~~~~~~~l~~~l~~~-GV~v~~g~~~~~~~~~~~r~~i~ 337 (359)
T 3pj0_A 295 YFENSADEIGAILTKIQDET-GVGISGYLQEKSADVCAFEVSVG 337 (359)
T ss_dssp EESSCHHHHHHHHHHHHHHH-CEECCSCCEEEETTEEEEEEECC
T ss_pred EecCccchhHHHHHHHHHhc-CcEecCCccccCCCceEEEEEec
Confidence 77432 2356788888655 99999985432 2 356999764
No 155
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.96 E-value=3.7e-27 Score=216.47 Aligned_cols=298 Identities=11% Similarity=0.111 Sum_probs=204.1
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~ 97 (367)
.+++++++++.+.....+.+.......++++.+++++|. +++++++||++|+..++.++ +.+||+|+++.++|++.
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~g~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~ 85 (394)
T 1o69_A 9 HMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVAGVKQDDIVLASSFTFIAS 85 (394)
T ss_dssp ---CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCccCCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHH
Confidence 344555666555432222222235678999999999997 35999999999999999998 89999999999998886
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 98 LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 98 ~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
. ..++..|++++.++.+.++.+|++++++++++.. .++++|++++ |+|...++++|.++|++ +|+++|+|++
T Consensus 86 ~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-~~~~~v~~~~---~~G~~~~l~~i~~l~~~--~~~~li~Dea 157 (394)
T 1o69_A 86 V--APICYLKAKPVFIDCDETYNIDVDLLKLAIKECE-KKPKALILTH---LYGNAAKMDEIVEICKE--NDIVLIEDAA 157 (394)
T ss_dssp T--HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS-SCCCEEEEEC---GGGCCCCHHHHHHHHHH--TTCEEEEECT
T ss_pred H--HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc-CCceEEEEEC---CCCChhhHHHHHHHHHH--cCCEEEEECc
Confidence 4 3456689999999998778899999999998532 2579999886 79999999999999999 9999999999
Q ss_pred eccCceeeccc--c-ccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcH
Q 017726 178 SSICAIDFRMD--E-WGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSI 253 (367)
Q Consensus 178 ~~~~~~~~~~~--~-~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (367)
|+.+....+.. . .++|+.++|.+|.++ +.++|+++++ +++++++........... ...+..+.| +...+++.
T Consensus 158 ~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~g-~~~~~~~~ 233 (394)
T 1o69_A 158 EALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENC--LHYEHLDYG-YNYRLSNV 233 (394)
T ss_dssp TCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSS--SSCCCSSCC-CBCBCCHH
T ss_pred CcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccC--ccccccccC-cccCcCHH
Confidence 98655432211 1 257888999999886 5568999995 788777764321110000 000000011 11224555
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC-ceEEEEcCCC----------------
Q 017726 254 QLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD-TVTAVIVPSH---------------- 316 (367)
Q Consensus 254 ~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~~---------------- 316 (367)
...+++.. ++. +++..++.+++++++.+.|+++ +++..+......+ +++++.++.+
T Consensus 234 ~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T 1o69_A 234 LGAIGVAQ-MEV-----LEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQK 306 (394)
T ss_dssp HHHHHHHH-HTT-----HHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCC
T ss_pred HHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccccccccccccc
Confidence 43333221 222 5667788899999999999887 5555432111122 2566777532
Q ss_pred -----CCHHHHHHHHHhhCCeEEccCCC
Q 017726 317 -----INSSEIVRRAWQRYNLSLGLGLN 339 (367)
Q Consensus 317 -----~~~~~l~~~L~~~~gv~v~~g~~ 339 (367)
.+..++.+.|.+ +||.++++..
T Consensus 307 ~~~~~~~~~~l~~~L~~-~gI~v~~~~~ 333 (394)
T 1o69_A 307 NITLHPKISKLIEDLKN-KQIETRPLWK 333 (394)
T ss_dssp CCCCCHHHHHHHHHHHH-TTCCCBCCCC
T ss_pred ccccccCHHHHHHHHHH-cCCcccccCC
Confidence 256789999965 5999998853
No 156
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.96 E-value=3.2e-26 Score=211.35 Aligned_cols=294 Identities=13% Similarity=0.036 Sum_probs=190.7
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~ 98 (367)
+.++.+.+++.+......+.......+++++.+++++|.+ ++++++||++|+..++.+++.+||+|+++.+.|.+..
T Consensus 33 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~ 109 (412)
T 2cb1_A 33 KTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEGAL---EAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTI 109 (412)
T ss_dssp SSHHHHHHHHHHCCSCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHH
T ss_pred CChHHHHHHhccccCcCcCCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHH
Confidence 4455555555421111112122366889999999999975 4889999999999999998999999999999887753
Q ss_pred --HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 99 --WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 99 --~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
+...++..|++++.++.+ +++++++++ +++++|++++++||+|.+.|+++|.++|++ +|+++++|+
T Consensus 110 ~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~--~~~~li~D~ 177 (412)
T 2cb1_A 110 GLFGQVLSLMGVTVRYVDPE------PEAVREALS----AKTRAVFVETVANPALLVPDLEALATLAEE--AGVALVVDN 177 (412)
T ss_dssp HHHHHTTTTTTCEEEEECSS------HHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEEC
T ss_pred HHHHHHHHHcCCEEEEECCC------HHHHHHHhc----cCCeEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEEC
Confidence 322355679999988753 899999987 467999999999999999999999999999 999999999
Q ss_pred eeccCceeeccccccceEEEecCCCcccCCCc-ceeeeeCH-HHH-HHhccCCCCc-eee------chHHHHHHhhcCC-
Q 017726 177 VSSICAIDFRMDEWGIDVALTGSQKALSLPTG-MGIVCASP-KAL-EASKTAKSVR-VFF------DWKDYIKFYNLGT- 245 (367)
Q Consensus 177 ~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g-~g~~~~~~-~~~-~~~~~~~~~~-~~~------~~~~~~~~~~~~~- 245 (367)
+|+.+.........++|++++|+||+++++.+ +|+++..+ +.. .+......+. ... +..+...+++.++
T Consensus 178 ~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~ 257 (412)
T 2cb1_A 178 TFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL 257 (412)
T ss_dssp GGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT
T ss_pred CCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH
Confidence 99877322233345799999999999987655 56666544 320 0000000000 000 0001112221111
Q ss_pred ccCC-CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCc------------cCCCceEE
Q 017726 246 FWPY-TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEE------------WFSDTVTA 310 (367)
Q Consensus 246 ~~~~-~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~------------~~~~~~~~ 310 (367)
...+ ..+....+.....+ ..++...++..++++++.+.|.+. ++..+ .|... ...+.++.
T Consensus 258 ~~~g~~~~~~~a~~~~~~l-----~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~ 332 (412)
T 2cb1_A 258 SLCGMALSPFNAYLLFQGL-----ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILT 332 (412)
T ss_dssp TTTCCCCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEE
T ss_pred HhcCCCCChHHhHHHHcCC-----chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence 0011 22322211111122 224556667788999999999987 77744 23211 12455788
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccC
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g 337 (367)
|.+ + +.+++.+.|. +.||.+ .+
T Consensus 333 ~~~--~-~~~~~~~~l~-~~~i~~-~~ 354 (412)
T 2cb1_A 333 LDL--G-DLERASRFLG-AIRLLK-AA 354 (412)
T ss_dssp EEC--S-SHHHHHHHHH-HCSSEE-CS
T ss_pred EEe--C-CHHHHHHHHH-hCCeee-ec
Confidence 888 3 6667777664 569998 65
No 157
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.95 E-value=1.3e-26 Score=211.54 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=200.2
Q ss_pred ChHHHHHHHccCCC----CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc---cC---CCC-CeEE
Q 017726 20 IPDQVIRAMNRNNE----DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN---TL---SPG-DRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~---~~---~~g-d~vl 88 (367)
.++.+.+++.+... ....+. .....++++.+++++|.+ +++++++||++|+..++.+ +. ++| |+|+
T Consensus 45 ~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~l~~~la~~~g~~--~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl 121 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKLLHVSNLYE-NPWQEELAHKLVKHFWTE--GKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFI 121 (375)
T ss_dssp SCHHHHHHHHHHHHHCSCCCTTBC-CHHHHHHHHHHHHTSSSC--EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCHHHHHHHHHHHHhccccCcccC-CHHHHHHHHHHHhhcCCC--CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEE
Confidence 56777777766421 112221 245779999999999983 5699999999999998864 34 678 9999
Q ss_pred EEeCCcchHHHHHHHHHhCC-------c-----eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 89 SFLIGQFSLLWIDQQQRLNF-------N-----VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~-------~-----~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+.+++|++.... .....+. . +..++. .|+++++++++ +++++|++++++||||.+.|
T Consensus 122 ~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~ 191 (375)
T 2eh6_A 122 SFENSFHGRTYG-SLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLD----EETAGIIIEVIQGEGGVNEAS 191 (375)
T ss_dssp EEBTCCCCSSHH-HHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCC----TTEEEEEECSEETTTTSEECC
T ss_pred EECCCcCCCchh-hhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhc----CCeEEEEEeCccCCCCCcCCC
Confidence 999988775421 1222221 1 333332 48999998887 46799999999999999988
Q ss_pred ---HHHHHHHHHhcCCCcEEEEeeeec-cCcee--ecccccc--ceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 156 ---LSKVRKLLDEYRHPALFLVDGVSS-ICAID--FRMDEWG--IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 156 ---~~~i~~~~~~~~~~~~vi~D~~~~-~~~~~--~~~~~~~--~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
+++|.++|++ +|+++|+|++|+ ++... ++....+ .|++++| |+++++.++|++++++++++++.....
T Consensus 192 ~~~l~~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~ 267 (375)
T 2eh6_A 192 EDFLSKLQEICKE--KDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPGSH 267 (375)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSC
T ss_pred HHHHHHHHHHHHH--hCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCC
Confidence 9999999999 999999999998 43322 2233334 7888555 999877778999999988776654211
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
+. .+..+...+.+..++++.+. +..++.+++++++.+.|++++.....+ .+.
T Consensus 268 ----------------~~--~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~g~ 319 (375)
T 2eh6_A 268 ----------------GS--TFGGNPLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGKVKG-----RGL 319 (375)
T ss_dssp ----------------CC--SSTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSEEEE-----ETT
T ss_pred ----------------CC--CCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCceE-----EEE
Confidence 11 12234444444445555543 567788899999999999875433322 345
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++++.++. +..++++.|.+ +||.+.++ .++++|+++....+++++
T Consensus 320 ~~~~~~~~--~~~~~~~~l~~-~gi~~~~~----~~~~iRi~~~~~~~~~~i 364 (375)
T 2eh6_A 320 MLGLELER--ECKDYVLKALE-KGLLINCT----AGKVLRFLPPLIIQKEHI 364 (375)
T ss_dssp EEEEECSS--CCHHHHHHHHH-TTEECEEE----TTTEEEECCCTTCCHHHH
T ss_pred EEEEEEcC--cHHHHHHHHHH-CCCEEecC----CCCEEEEECCCCCCHHHH
Confidence 67888753 46789999975 59999875 256899997655554443
No 158
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.95 E-value=1.3e-27 Score=219.57 Aligned_cols=312 Identities=15% Similarity=0.071 Sum_probs=209.7
Q ss_pred CCChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHh-cCC-CCceEEe--cCChhHHHHHHHHccC--CCCCeEEE
Q 017726 18 VHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF-KTT-SGTPFLI--PTTGTGAWESALTNTL--SPGDRIIS 89 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~-~~~-~~~~v~~--~~ggt~al~~~~~~~~--~~gd~vl~ 89 (367)
.++++.+.+++.+... ....|.......++|+.+++++ +.. ++++|++ |+||++|+..++..+. .+||+|++
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~ 122 (394)
T 2ay1_A 43 TPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFV 122 (394)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEE
Confidence 3567888888876421 1112222234568999999987 541 2345888 9999999999887653 49999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD 164 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~ 164 (367)
..|+|++.. ..++..|.+++.++.+ .++.+|++++++++++.+ ++++++++++|+||||.++| +++|.++|+
T Consensus 123 ~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~ 199 (394)
T 2ay1_A 123 SDPTWPNHV--SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAK-KGDMVLLHGCCHNPTGANLTLDQWAEIASILE 199 (394)
T ss_dssp EESCCHHHH--HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCC-TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCChhHH--HHHHHcCCceEEEecccccCCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 999887753 4567789999999985 467789999999998642 34678888999999999986 557888899
Q ss_pred hcCCCcEEEEeeeeccCcee-------ec-ccccc-ceEEEecCCCcccCCCc--ceeeee---CHHHHHHhccCCCCce
Q 017726 165 EYRHPALFLVDGVSSICAID-------FR-MDEWG-IDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTAKSVRV 230 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~-------~~-~~~~~-~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~~~~~~~~~ 230 (367)
+ +|+++|+|++|+.+... +. +...+ .++++.|+||+++ ++| +|++++ ++++++.+....
T Consensus 200 ~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l~~~~---- 272 (394)
T 2ay1_A 200 K--TGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERTGCLLALCADAATRELAQGAM---- 272 (394)
T ss_dssp H--HTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHHH----
T ss_pred H--CCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCc-CcCCccceEEEEeCCHHHHHHHHHHH----
Confidence 9 99999999999865431 11 21112 3578889999984 555 599988 676655443110
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC----CccccCCC
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG----LKNCTQKE 301 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~ 301 (367)
......+ ..+++...+.++.++++... +..+++++++++++++++.+.|++++ +.+..+
T Consensus 273 --------~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-- 340 (394)
T 2ay1_A 273 --------AFLNRQT--YSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE-- 340 (394)
T ss_dssp --------HHHHHTT--TSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH--
T ss_pred --------HHHHhhh--cCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcC--
Confidence 0000011 11234444455555554331 12377888999999999999999874 666554
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhhc
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLFQ 366 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~~ 366 (367)
..+.++++.+ +.+.+.+.| +++||.+.+| +||++.. ..++.+...++|++
T Consensus 341 --~~g~~~~~~~----~~~~~~~~l-~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~~ 391 (394)
T 2ay1_A 341 --HRGMFSRLGA----TPEQVKRIK-EEFGIYMVGD--------SRINIAGLNDNTIPILARAIIE 391 (394)
T ss_dssp --CCSSEEECCC----CHHHHHHHH-HHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHH
T ss_pred --CceEEEeeCC----CHHHHHHHH-HhCCEEecCC--------CeEEeecCCHhhHHHHHHHHHH
Confidence 3444555544 344555555 4569999864 5998653 45555666666543
No 159
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.95 E-value=3.1e-26 Score=214.41 Aligned_cols=319 Identities=14% Similarity=0.076 Sum_probs=209.6
Q ss_pred CCccccc---CCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC
Q 017726 8 GKNHLFV---PGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG 84 (367)
Q Consensus 8 ~~~~~~~---~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g 84 (367)
++.|++. .++.++++++++++.... ..+.......++++.++++++.+ ++++++||++|+..++.+++.+|
T Consensus 41 ~~~ylD~~~~~~~~~~~~~~~~a~~~~~---~~y~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~al~~l~~~g 114 (456)
T 2ez2_A 41 KDIYIDLLTDSGTNAMSDKQWAGMMMGD---EAYAGSENFYHLERTVQELFGFK---HIVPTHQGRGAENLLSQLAIKPG 114 (456)
T ss_dssp GGCSEECSCSSSCCCCCHHHHHHHTTCC---CCSSSCHHHHHHHHHHHHHHCCS---EEEEESSHHHHHHHHHHHHCCTT
T ss_pred ccceeeeccccCCccCCHHHHHHhhcch---hhcccChhHHHHHHHHHHHhCCC---cEEEeCCcHHHHHHHHHHhCCCC
Confidence 3444444 355577899999998432 12333466789999999999865 48999999999999999888999
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC----------CCCCCHHHHHHHHhccCCCCccEEEEEecCC-Ccccc
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW----------GEGAKLDVLASKLAADTAHTIKAICIVHNET-ATGVT 153 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n-~tG~~ 153 (367)
| +++.+.|++.. ...++..|.+++.++.+. ++.+|++++++++++++..++++|++++|+| |||.+
T Consensus 115 d--i~~~~~~~~~~-~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~ 191 (456)
T 2ez2_A 115 Q--YVAGNMYFTTT-RYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQP 191 (456)
T ss_dssp C--EEEESSCCHHH-HHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBC
T ss_pred C--Eeccccccchh-HHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCcc
Confidence 9 77778775543 245677899999998763 2578999999999864212348999999998 99998
Q ss_pred cc---HHHHHHHHHhcCCCcEEEEeeeeccC----------cee-ecc------ccccceEEEecCCCcccCCCcceeee
Q 017726 154 NN---LSKVRKLLDEYRHPALFLVDGVSSIC----------AID-FRM------DEWGIDVALTGSQKALSLPTGMGIVC 213 (367)
Q Consensus 154 ~~---~~~i~~~~~~~~~~~~vi~D~~~~~~----------~~~-~~~------~~~~~d~~~~s~~K~~~g~~g~g~~~ 213 (367)
.| +++|.++|++ +|+++|+|++|+.+ ... ... .....|++++|++|+++ ++..|+++
T Consensus 192 ~~~~~l~~i~~la~~--~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~~gG~~~ 268 (456)
T 2ez2_A 192 VSMANMRAVRELTEA--HGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VNIGGFLC 268 (456)
T ss_dssp CCHHHHHHHHHHHHH--TTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CSSCEEEE
T ss_pred CCHHHHHHHHHHHHH--cCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CCceeEEE
Confidence 87 8999999999 99999999998863 111 110 01235888888888764 33358888
Q ss_pred e-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 214 A-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
. ++++++++..... ... +..+....+...+.++ ++......+ ++..++..++.+++.+.|++.
T Consensus 269 ~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~a~--a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~ 332 (456)
T 2ez2_A 269 MNDDEMFSSAKELVV------------VYE-GMPSYGGLAGRDMEAM--AIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA 332 (456)
T ss_dssp ESCHHHHHHHHHHHH------------HHT-CCTTTTTCCHHHHHHH--HHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHh------------hcc-CcccccCcchhHHHHH--HHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC
Confidence 8 6787776643210 000 1000111222222221 333332211 456667778888999999888
Q ss_pred CCccccCCCccCCCceEEEEcC---CCCCHHHH-----HHHHHhhCCeEEcc-CCC--C---------C-CCcEEEEeec
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVP---SHINSSEI-----VRRAWQRYNLSLGL-GLN--K---------V-AGKVFRIGHL 351 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-----~~~L~~~~gv~v~~-g~~--~---------~-~~~~iRi~~~ 351 (367)
|+++..+ ..+.++++.++ .+.+..++ +++|.+++||.+.+ |.. + . ....+||++.
T Consensus 333 g~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~ 408 (456)
T 2ez2_A 333 GVPIVEP----VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIP 408 (456)
T ss_dssp TCCBCSS----CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred CCccccC----CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeC
Confidence 8777655 23456677652 24455555 77775556998654 321 0 1 1367999976
Q ss_pred CC-CCHHH
Q 017726 352 GH-LNEVM 358 (367)
Q Consensus 352 ~~-~~~~~ 358 (367)
.. .++++
T Consensus 409 ~~~~t~e~ 416 (456)
T 2ez2_A 409 RRVYTYAH 416 (456)
T ss_dssp TTTCCHHH
T ss_pred CCCCCHHH
Confidence 43 44443
No 160
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.95 E-value=1.3e-26 Score=211.19 Aligned_cols=315 Identities=9% Similarity=0.085 Sum_probs=206.0
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHH-HHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcc
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDI-KKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQF 95 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~l-a~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~ 95 (367)
+.++.+.+++.+.... ..++ ......++++.+ ++++|..+ .+++++|||+|+..++.++ +++||+|+++.+.|.
T Consensus 13 ~~~~~i~~a~~~~~~~~~~~~-~~~~~~~l~~~~~a~~~g~~~--~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~ 89 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHIYTN-YGPINQRFEQTIMSGFFQNRG--AVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFP 89 (377)
T ss_dssp CCGGGGHHHHHHHHHHTCCSS-SCHHHHHHHHHHHHHTSTTCS--EEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCT
T ss_pred CCcHHHHHHHHHHHHcCCccc-CCHHHHHHHHHHHHHHhCCCC--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcH
Confidence 4445455555443222 1221 125678999999 99999322 4788999999999999887 899999999999888
Q ss_pred hHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHH-hccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE
Q 017726 96 SLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKL-AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL 173 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i-~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi 173 (367)
+.. ..++..|++++.++.+ .++.+|++++++++ +++ +++|+|+ ++||+|...|+++|.++|+ +|++||
T Consensus 90 ~~~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~--~~tk~v~---~~~~~G~~~~~~~i~~la~---~~~~vi 159 (377)
T 3ju7_A 90 ATP--LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELK--EEVAIVV---PYATFGSWMNLEEYEELEK---KGVPVV 159 (377)
T ss_dssp HHH--HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHG--GGEEEEC---CBCGGGBCCCCHHHHHHHH---TTCCBE
T ss_pred HHH--HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCC--CCceEEE---EECCCCCccCHHHHHHHHh---cCCEEE
Confidence 754 4567889999999987 46789999999998 432 1278887 5678999999999999997 799999
Q ss_pred EeeeeccCceeeccccc-----cceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 174 VDGVSSICAIDFRMDEW-----GIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 174 ~D~~~~~~~~~~~~~~~-----~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
+|++|+++... +.... ++++.+++++|+++++. .|+++. ++++.+++......+....+ ...+.|.
T Consensus 160 ~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~-gG~~~~~~~~l~~~~~~~~~~g~~~~~----~~~~~g~-- 231 (377)
T 3ju7_A 160 VDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGE-GGLIYSKNEEDIQRIKRMGNFGFDTNR----ECTMMGF-- 231 (377)
T ss_dssp EECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBS-CEEEEESCHHHHHHHHHHTBTTBCTTS----CBCSSCC--
T ss_pred EECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCC-cEEEEECCHHHHHHHHHHHhcCCCCCC----ceeeccc--
Confidence 99999987642 22112 24445555789997644 366655 56666666544322111000 0001111
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC-C--ccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-L--KNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
.+..+. +.+++.......++...++.+++++++.+.|++.+ + .+...........++.+.+++..+.+++.+
T Consensus 232 ~~~~~~-----~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (377)
T 3ju7_A 232 NCKMSE-----YAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIE 306 (377)
T ss_dssp BCCCCH-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHH
T ss_pred cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHH
Confidence 111222 23343333334477888899999999999999983 3 222221111122234566655455889999
Q ss_pred HHHhhCCeEEccCCCC-C------C--------------CcEEEEeecCCCCHHHHH
Q 017726 325 RAWQRYNLSLGLGLNK-V------A--------------GKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~-~------~--------------~~~iRi~~~~~~~~~~~~ 360 (367)
.|.++ ||.++.++.+ . . ...+|+.++...+++|+.
T Consensus 307 ~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~ 362 (377)
T 3ju7_A 307 DLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVE 362 (377)
T ss_dssp HHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred HHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHH
Confidence 99755 9999877621 0 0 135999888777765543
No 161
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.95 E-value=4.4e-26 Score=209.74 Aligned_cols=283 Identities=14% Similarity=0.109 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+ .+++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|++++.++.+
T Consensus 80 ~p~~~~l~~~la~~~g~~---~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 154 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAP---AAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-- 154 (414)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC--
Confidence 367889999999999963 3788899999999999999999999999999888764 333456689999999875
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+....+. ..++|+++.|
T Consensus 155 ---d~~~l~~ai~----~~t~~v~le~p~NptG~~~~l~~i~~la~~--~g~~livDe~~~~~~~~~~~-~~g~div~~S 224 (414)
T 3ndn_A 155 ---DLSQWERALS----VPTQAVFFETPSNPMQSLVDIAAVTELAHA--AGAKVVLDNVFATPLLQQGF-PLGVDVVVYS 224 (414)
T ss_dssp ---CHHHHHHHTS----SCCSEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTHHHHCCCG-GGTCSEEEEE
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCCCCCccccHHHHHHHHHH--cCCEEEEECCCcccccCCch-hcCCCeEecc
Confidence 8999999997 467999999999999999999999999999 99999999999855432222 4578999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHH-HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++++.. +|+++++++.+. .+... .. ..|. +.+... ...++.. ...+..+.
T Consensus 225 ~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~-------------~~-~~g~----~~~~~~---a~~~~~~--l~~l~~r~ 281 (414)
T 3ndn_A 225 GTKHIDGQGRVLGGAILGDREYIDGPVQKL-------------MR-HTGP----AMSAFN---AWVLLKG--LETLAIRV 281 (414)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHTTHHHHH-------------HH-HHCC----CCCHHH---HHHHHHH--GGGHHHHH
T ss_pred CCccccCCCCceEEEEEECHHHHHHHHHHH-------------HH-HcCC----CCCHHH---HHHHHHH--HHHHHHHH
Confidence 9999964332 699999988765 33311 00 0121 233322 1112221 12256667
Q ss_pred HHHHHHHHHHHHHHHHc-CCccc-cCCC-c-----------cCCCceEEEEcCCC-----CCHHHHHHHHHhhCCeEEcc
Q 017726 276 ERHRRLGKATRLAVEAW-GLKNC-TQKE-E-----------WFSDTVTAVIVPSH-----INSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~-~-----------~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gv~v~~ 336 (367)
++..++++.+.+.|++. ++..+ .|.- . ...+.+++|.++.+ .+...+++.|. ..++.+..
T Consensus 282 ~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~-~~~~~~s~ 360 (414)
T 3ndn_A 282 QHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMR-LIDISNNL 360 (414)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCS-SSEECSCC
T ss_pred HHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCc-cceEcCCC
Confidence 78889999999999886 44322 2210 0 01356888988432 12455666663 44666654
Q ss_pred CCC-----------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 337 GLN-----------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 337 g~~-----------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
|.. ...++.+|+| .+..+.+|+...+
T Consensus 361 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRls-vG~e~~~dli~dl 409 (414)
T 3ndn_A 361 GDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRIS-VGLEDTDDLIADI 409 (414)
T ss_dssp SCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEE-CCSSCHHHHHHHH
T ss_pred CCCCceeeCccccccccCCHHHHHhcCCCCCeEEEE-eCcCCHHHHHHHH
Confidence 421 1234679999 4777766666554
No 162
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.95 E-value=6.3e-27 Score=214.19 Aligned_cols=283 Identities=13% Similarity=0.093 Sum_probs=201.3
Q ss_pred HHHHHHHccCCCC------CCCCcH-HHHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHHccCCCCCeEEEEe-
Q 017726 22 DQVIRAMNRNNED------YRSPAV-PALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFL- 91 (367)
Q Consensus 22 ~~v~~a~~~~~~~------~~~~~~-~~~~~~~~~~la~~~~~~~~~~v~~--~~ggt~al~~~~~~~~~~gd~vl~~~- 91 (367)
.+|++++.+.... ..++.+ ....+++++.+++++|.+. .+++ ++||++|+..++.+++.+||+|++..
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~ 109 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGILRPDDELLYITG 109 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHHCCTTCEEEECSS
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 4577887774321 111211 1347889999999999865 3443 78999999999999999999999998
Q ss_pred CCcchHH-HH-------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe----cCCCccccccHHHH
Q 017726 92 IGQFSLL-WI-------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSKV 159 (367)
Q Consensus 92 ~~~~~~~-~~-------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~----~~n~tG~~~~~~~i 159 (367)
+.|.+.. .. ..++..|++++.++.++++.+|+++++++++ +++|+|++++ |+||+|.+.|+++|
T Consensus 110 ~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~----~~tklV~i~~s~g~p~nptg~v~~l~~I 185 (409)
T 3jzl_A 110 QPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT----PKTKMIGIQRSRGYADRPSFTIEKIKEM 185 (409)
T ss_dssp SCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC----TTEEEEEEECSCTTSSSCCCCHHHHHHH
T ss_pred CCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc----CCCeEEEEECCCCCCCCCcCccccHHHH
Confidence 7666543 21 2346679999999998888899999999997 4779999999 99999999999999
Q ss_pred HHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCC--cceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPT--GMGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
.++|++.++|+++++|++|+.+.........++|++++|+||+++|+. ..|++++++++++++..........
T Consensus 186 ~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g----- 260 (409)
T 3jzl_A 186 IVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIG----- 260 (409)
T ss_dssp HHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTG-----
T ss_pred HHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccccc-----
Confidence 999998667999999999987653334445679999999999997642 2499999999998886521110000
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
...+ +......++...+.. +..++++..+++.++.+.|+++|+++.+.....+...++.|.+++..
T Consensus 261 ---~~~g------~~~~~~~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~~~ 326 (409)
T 3jzl_A 261 ---REAG------ASLYSLLEMYQGFFL-----APHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNKE 326 (409)
T ss_dssp ---GGCC------CCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSCHH
T ss_pred ---cccc------ccHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCCHH
Confidence 0011 111101222222322 35667788999999999999999887543222233347778885333
Q ss_pred CHHHHHHHHHhh
Q 017726 318 NSSEIVRRAWQR 329 (367)
Q Consensus 318 ~~~~l~~~L~~~ 329 (367)
...++++.|+..
T Consensus 327 ~~~~~~~~L~~~ 338 (409)
T 3jzl_A 327 KMVAFAQAIQAA 338 (409)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 455788888644
No 163
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.95 E-value=5.1e-27 Score=215.74 Aligned_cols=310 Identities=11% Similarity=0.000 Sum_probs=207.9
Q ss_pred CChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEe--cCChhHHHHHHHHcc--CCCCCeE
Q 017726 19 HIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLI--PTTGTGAWESALTNT--LSPGDRI 87 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~ggt~al~~~~~~~--~~~gd~v 87 (367)
++++.+.+++.+... ....|.......++|+.++++++.. ++++|++ ++||++|+..++..+ +.+||+|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~V 123 (396)
T 2q7w_A 44 PVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRV 123 (396)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEE
T ss_pred cCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEE
Confidence 566888888876421 1122322344678999999998321 1345887 999999999988654 4699999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKL 162 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~ 162 (367)
++..|.|+++. ..++..|.+++.++.+ .++.+|++++++++++.+ ++++++++++|+||||.+++ +++|.++
T Consensus 124 l~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~~~~~l~~l~~~ 200 (396)
T 2q7w_A 124 WVSNPSWPNHK--SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ-AGDVVLFHGCCHNPTGIDPTLEQWQTLAQL 200 (396)
T ss_dssp EEEESCCTHHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC-TTCEEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred EEcCCCchhHH--HHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence 99999888753 5567789999999985 467789999999998642 35688899999999999986 5578889
Q ss_pred HHhcCCCcEEEEeeeeccCcee-------ec-ccc-ccceEEEecCCCcccCCCc--ceeeee---CHHHHHHhccCCCC
Q 017726 163 LDEYRHPALFLVDGVSSICAID-------FR-MDE-WGIDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTAKSV 228 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~-------~~-~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~~~~~~~ 228 (367)
|++ +|+++|+|++|+.+... +. ... ...++++.|+||.++ ++| +|++++ +++.++.+....
T Consensus 201 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~-- 275 (396)
T 2q7w_A 201 SVE--KGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG-LYNERVGACTLVAADSETVDRAFSQM-- 275 (396)
T ss_dssp HHH--HTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHHHHH--
T ss_pred HHH--CCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc-ccccccceEEEEcCCHHHHHHHHHHH--
Confidence 999 99999999998764321 11 111 135688999999984 556 699987 564433332100
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC----CccccC
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG----LKNCTQ 299 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 299 (367)
....... ..+++.....++.++++... +..+++++++++++++++.+.|++.+ +.+..+
T Consensus 276 ----------~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 343 (396)
T 2q7w_A 276 ----------KAAIRAN--YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK 343 (396)
T ss_dssp ----------HHHHHTT--TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH
T ss_pred ----------HHHHhhc--cCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC
Confidence 0000011 12345555555555554320 12367778889999999999999986 666554
Q ss_pred CCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
.++.++++.+ +.+.+.+.| +++||.+.+| +||++.. ..++.+...+.|+
T Consensus 344 ----~~~~~~~~~~----~~~~~~~~l-~~~gv~v~~~--------~Ris~~~~~~e~i~~~~~~l~ 393 (396)
T 2q7w_A 344 ----QNGMFSFSGL----TKEQVLRLR-EEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIV 393 (396)
T ss_dssp ----CCSSEEECCC----CHHHHHHHH-HHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHH
T ss_pred ----CCceEEEecC----CHHHHHHHH-HhcCeeecCC--------ceEEEeecCHHHHHHHHHHHH
Confidence 3454544443 344444444 5569999864 6999764 4555565555554
No 164
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.92 E-value=2.6e-30 Score=237.41 Aligned_cols=315 Identities=10% Similarity=-0.014 Sum_probs=217.9
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ..+|. ....++++.+++++ |.+ +++++++++|+++++..++.+++.+||+|++..|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~--~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p 121 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQLVYGYT--YASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSP 121 (392)
Confidence 4567788888776532 12222 11567777777765 421 2346999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
.|++.. ..++..|.+++.++.+.. +.+|++++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 122 ~~~~~~--~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~- 195 (392)
T 3b1d_A 122 VYPPFA--RSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE---NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQK- 195 (392)
Confidence 887754 446677888888887522 35899999999873 35789999999999999986 7889999999
Q ss_pred CCCcEEEEeeeeccCcee----ecc---cc--ccceEEEecCCCccc-CCCcceeeeeCHH-HHHHhccCCCCceeechH
Q 017726 167 RHPALFLVDGVSSICAID----FRM---DE--WGIDVALTGSQKALS-LPTGMGIVCASPK-ALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~----~~~---~~--~~~d~~~~s~~K~~~-g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+... .+. .. .+.++++.|++|+++ +..++|+++++++ +++.+......
T Consensus 196 -~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~------- 267 (392)
T 3b1d_A 196 -HHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLV------- 267 (392)
Confidence 99999999999764321 111 11 346689999999995 2334699988654 77666532110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEc
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
+...+++.....+..+++... +..++++++++.++++.+.+.|++ + ++.+..+ .++.++++++
T Consensus 268 ----------~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~i~~ 332 (392)
T 3b1d_A 268 ----------NNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP----QGTYLIWLDF 332 (392)
Confidence 001123443334444455432 223777888899999999999988 5 7777665 4555556777
Q ss_pred CC-CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecCCCCHHHHHHhhh
Q 017726 314 PS-HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 314 ~~-~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+. +.+..++++.|.+++||.+.+|..+. .++++||++....++.+...+.|
T Consensus 333 ~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l 386 (392)
T 3b1d_A 333 SDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRI 386 (392)
Confidence 54 35677899999756699999875432 34679999766544444433333
No 165
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.95 E-value=1.3e-27 Score=227.18 Aligned_cols=322 Identities=11% Similarity=0.046 Sum_probs=205.8
Q ss_pred hHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh----c--CC--CCceEEecCChhHHHHHHHHc-----cCCCCCeE
Q 017726 21 PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----K--TT--SGTPFLIPTTGTGAWESALTN-----TLSPGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~--~~~~v~~~~ggt~al~~~~~~-----~~~~gd~v 87 (367)
++.+++++.+......++.......++|+.+++++ + .+ +++++++|+|+++++..++.+ ++.+||.|
T Consensus 117 ~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~V 196 (533)
T 3f6t_A 117 RDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKI 196 (533)
T ss_dssp HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEE
T ss_pred CcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEE
Confidence 55566555543322111111123345666666665 2 22 235799999999999999987 78999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCC----CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH---HHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESD----WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---KVR 160 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~----~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~---~i~ 160 (367)
+++.|.|.+.. ..++..|.+++.++.+ .++.+|+++++++++ +++++|++++|+||||.++|.+ +|.
T Consensus 197 iv~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~----~~~k~v~l~~p~NPtG~~~~~~~l~~l~ 270 (533)
T 3f6t_A 197 AINEPIFTPYL--RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD----PSIKALIVVNPTNPTSKEFDTNALNAIK 270 (533)
T ss_dssp EEESSCCHHHH--TSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC----TTEEEEEEESSCTTTCBCCCHHHHHHHH
T ss_pred EEcCCCcHHHH--HHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC----CCCeEEEEeCCCCCCccccCHHHHHHHH
Confidence 99999887753 4456678899999875 356789999999987 5789999999999999999866 677
Q ss_pred HHHH-hcCCCcEEEEeeeeccCcee---eccccccceEEEecCCCcccCCCc--ceeeeeCHH-----HHHHhccCC---
Q 017726 161 KLLD-EYRHPALFLVDGVSSICAID---FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPK-----ALEASKTAK--- 226 (367)
Q Consensus 161 ~~~~-~~~~~~~vi~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~-----~~~~~~~~~--- 226 (367)
++|+ + +|+++|+|++|+..... +.....+.++++.|+||.++ ++| +|+++++++ +++.+.+..
T Consensus 271 ~la~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~ 347 (533)
T 3f6t_A 271 QAVEKN--PKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFG-CTGWRLGVIALNEKNVFDDNIAHLDKVELRQ 347 (533)
T ss_dssp HHHHHC--TTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHT-CGGGCEEEEEEESSCHHHHHHHTSCHHHHHH
T ss_pred HHHHhC--CCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCC-CcccceEEEEECcHHHHHHHHHhcchhhHHH
Confidence 7777 6 89999999998743321 11111246799999999984 666 799998776 444332100
Q ss_pred ---------CCceeechHH-HHHHhh-cCCccCCCCcHHHHHHHH-HHHHHHH-----H---hChHHHHHHHHHHHHHHH
Q 017726 227 ---------SVRVFFDWKD-YIKFYN-LGTFWPYTPSIQLLYGLR-AALDLIF-----E---EGLENVIERHRRLGKATR 286 (367)
Q Consensus 227 ---------~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~al~-~al~~~~-----~---~g~~~~~~~~~~~~~~l~ 286 (367)
.....+..-+ ....+. ...+...+++.....++. .++..+. + ..+++++++++++++.+.
T Consensus 348 ~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~ 427 (533)
T 3f6t_A 348 LHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLH 427 (533)
T ss_dssp HHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 000001 111112233433333321 1344442 1 126778888999999999
Q ss_pred HHHHHcCCccccCCCccCCCceEEEEcCC----------------CCCHHHHHHHHHhhCCeEEccCCCCCC-CcEEEEe
Q 017726 287 LAVEAWGLKNCTQKEEWFSDTVTAVIVPS----------------HINSSEIVRRAWQRYNLSLGLGLNKVA-GKVFRIG 349 (367)
Q Consensus 287 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~L~~~~gv~v~~g~~~~~-~~~iRi~ 349 (367)
+.|. .++.+..+ .++.++++.++. +.+..+++.++.+++||.+.+|..+.. .+++|++
T Consensus 428 ~~L~-~~~~~~~~----~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls 502 (533)
T 3f6t_A 428 DAMQ-APKDETDT----NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVS 502 (533)
T ss_dssp HHHT-CCCCCSTT----BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEE
T ss_pred HhcC-CCccccCC----CceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEE
Confidence 9997 66665554 456667777632 135668888888788999999855433 5689999
Q ss_pred ecCCCCHH
Q 017726 350 HLGHLNEV 357 (367)
Q Consensus 350 ~~~~~~~~ 357 (367)
+.. .+++
T Consensus 503 ~a~-~~~e 509 (533)
T 3f6t_A 503 QAN-LPTE 509 (533)
T ss_dssp SSS-SCHH
T ss_pred Eee-CCHH
Confidence 743 3443
No 166
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.95 E-value=7.1e-26 Score=208.13 Aligned_cols=284 Identities=15% Similarity=0.052 Sum_probs=186.7
Q ss_pred cccCCCCCChHHHHHHHccCCCC--CCCC--cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 12 LFVPGPVHIPDQVIRAMNRNNED--YRSP--AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 12 ~~~~~p~~~~~~v~~a~~~~~~~--~~~~--~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.+.++.+.+.+.+++...... ...+ .......++++.+++++|.+ + .++++||++|+..++.+++.+||+|
T Consensus 31 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~--~-~i~~~sG~~a~~~~l~~~~~~gd~v 107 (398)
T 1gc0_A 31 PVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGE--A-GLALASGMGAITSTLWTLLRPGDEV 107 (398)
T ss_dssp CBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred CccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCC--c-EEEECCHHHHHHHHHHHHhcCCCEE
Confidence 34555566666666665421111 1111 12367889999999999976 3 5666777999999999888999999
Q ss_pred EEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 88 ISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 88 l~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
+++.+.|++.. +...++..|+++..++.. |+++++++++ +++++|++++|+||||.+.|+++|.++|++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 178 (398)
T 1gc0_A 108 LLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMT----PATRVIYFESPANPNMHMADIAGVAKIARK 178 (398)
T ss_dssp EEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHGG
T ss_pred EEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcC----CCCeEEEEECCCCCCcccccHHHHHHHHHH
Confidence 99999988864 222346679999988764 7999999997 467999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCc--ceeeeeCHHHHH-HhccCCCCceeechHHHHHHhh
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+|+++++|++|+.+....+. ..++|+++.|+||+++++.+ .|+++++++.++ .+.... ..+.
T Consensus 179 --~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~------------~~~~ 243 (398)
T 1gc0_A 179 --HGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGL------------KDMT 243 (398)
T ss_dssp --GTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHH------------HHHT
T ss_pred --cCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHh------------hccC
Confidence 99999999999876543333 35789999999999986654 499999988765 343210 0001
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCc--------------cccCCCccCCCc
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK--------------NCTQKEEWFSDT 307 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~--------------~~~~~~~~~~~~ 307 (367)
.++.+....++...+++. +....++..++++.+.+.|++. ++. +..+... ..+.
T Consensus 244 -----~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~-~~~~ 312 (398)
T 1gc0_A 244 -----GAVLSPHDAALLMRGIKT-----LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS-QPGG 312 (398)
T ss_dssp -----CCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-----------------CCTT
T ss_pred -----CCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC-CCce
Confidence 123555443444334433 4555667778888888888775 221 1111101 2355
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~ 336 (367)
++.|.++ + +.++..+ +.++.++.++.
T Consensus 313 ~~~~~l~-~-~~~~~~~-~l~~~~i~~~~ 338 (398)
T 1gc0_A 313 MIAFELK-G-GIGAGRR-FMNALQLFSRA 338 (398)
T ss_dssp EEEEEET-T-HHHHHHH-HHHHCSSSEEC
T ss_pred EEEEEEC-C-CHHHHHH-HHHhCCCceec
Confidence 7788874 2 1233444 44566777654
No 167
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.95 E-value=1e-25 Score=206.61 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=220.8
Q ss_pred ccCCCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-------CCCC
Q 017726 13 FVPGPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-------LSPG 84 (367)
Q Consensus 13 ~~~~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-------~~~g 84 (367)
+..++..+++++++++.+.... ...+ .....++++.+++++|.+ .+++++|||+|+..++.++ +.+|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~~al~~~~~~~~~~~~~g 80 (390)
T 3b8x_A 6 YPLASSTWDDLEYKAIQSVLDSKMFTM--GEYVKQYETQFAKTFGSK---YAVMVSSGSTANLLMIAALFFTKKPRLKKG 80 (390)
T ss_dssp BCSCCCCCCHHHHHHHHHHHHHTCCSS--CHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTSSSSCSCCTT
T ss_pred ccCCCCCCCHHHHHHHHHHHHcCCCCC--ChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHHhhhhcCCCCc
Confidence 3457888999999998875432 2223 467889999999999976 3688899999999999887 7899
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
|+|+++.++|++.. ..++..|++++.++.+++ +.+|+++++++++ +++++|++++ ++|...|+++|.++|
T Consensus 81 ~~Vi~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~---~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 81 DEIIVPAVSWSTTY--YPLQQYGLRVKFVDIDINTLNIDIESLKEAVT----DSTKAILTVN---LLGNPNNFDEINKII 151 (390)
T ss_dssp CEEEEESSSCHHHH--HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCC----TTEEEEEEEC---GGGCCCCHHHHHHHH
T ss_pred CEEEECCCCcHHHH--HHHHHcCCEEEEEecCccccCcCHHHHHHHhC----cCCeEEEEEC---CccChhhHHHHHHHH
Confidence 99999999888764 345678999999999865 7899999999997 4679998874 678889999999999
Q ss_pred HhcCCCcEEEEeeeeccCceeeccccccc--eEEEec--CCCcccCCCcceeeeeCH-HHHHHhccCCCCceeec-----
Q 017726 164 DEYRHPALFLVDGVSSICAIDFRMDEWGI--DVALTG--SQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFD----- 233 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~~~~~~~~--d~~~~s--~~K~~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~----- 233 (367)
++ +|+++|+|++|+.+... +....+. |+.++| ++|.+.++.| |+++.++ ++.+++......+...+
T Consensus 152 ~~--~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 227 (390)
T 3b8x_A 152 GG--RDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKN 227 (390)
T ss_dssp TT--SCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEE
T ss_pred HH--cCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccc
Confidence 99 99999999999987654 4433343 555544 3566655566 8888876 56555543221110000
Q ss_pred --------hH-HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 017726 234 --------WK-DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW 303 (367)
Q Consensus 234 --------~~-~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 303 (367)
+. .....++..++...+.++...+++. +++. ++++.++.+++++++.+.|+++ |+.+..+. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l~~-----l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~ 300 (390)
T 3b8x_A 228 KVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QLKK-----LPRFISVRRKNAEYFLDKFKDHPYLDVQQET-GE 300 (390)
T ss_dssp TTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHTTCSSEEECCCC-SB
T ss_pred cccccccccccccccceeccccccCcCHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHhcCCCCcccCCCC-CC
Confidence 00 0000001111111244554433333 2332 5677888899999999999987 77665432 11
Q ss_pred CCCceEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCC---CC----------------------CcEEEEeecCCCCH
Q 017726 304 FSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNK---VA----------------------GKVFRIGHLGHLNE 356 (367)
Q Consensus 304 ~~~~~~~~~~~~--~~~~~~l~~~L~~~~gv~v~~g~~~---~~----------------------~~~iRi~~~~~~~~ 356 (367)
.....+.+.++. +.+.+++.+.|.+ .||.+++.+.+ .. ...+|++++...++
T Consensus 301 ~~~~~~~i~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~ 379 (390)
T 3b8x_A 301 SSWFGFSFIIKKDSGVIRKQLVENLNS-AGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELF 379 (390)
T ss_dssp CCCCEEEEEECTTSCCCHHHHHHHHHH-TTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCH
T ss_pred cccEEEEEEecCcCcccHHHHHHHHHH-CCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCH
Confidence 223335556642 4678899999965 59999874321 01 02599998888887
Q ss_pred HHHHH
Q 017726 357 VMFNF 361 (367)
Q Consensus 357 ~~~~~ 361 (367)
+|+..
T Consensus 380 ~di~~ 384 (390)
T 3b8x_A 380 DEIDY 384 (390)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 168
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.95 E-value=9e-27 Score=214.02 Aligned_cols=295 Identities=14% Similarity=0.103 Sum_probs=206.7
Q ss_pred ChHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~ 93 (367)
.++.+.+++.+.... + ..+ ......++++.++++++.+. +++++++||++|+..++.++. .+|+.|++.++.
T Consensus 62 ~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~-~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~ 139 (395)
T 1vef_A 62 GNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILPPEL-NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRG 139 (395)
T ss_dssp TCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSCTTE-EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTC
T ss_pred CCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcCCCc-CEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 667777777764321 1 112 24678899999999998754 469999999999999887653 578999999887
Q ss_pred cchHHHHHHHHHhCCc------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 94 QFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
|++... ..+...|.+ +..++. .|+++++++++ +++++|++++++||||.+.| ++
T Consensus 140 y~~~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~ 209 (395)
T 1vef_A 140 FSGRTM-GSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLR 209 (395)
T ss_dssp CCCSSH-HHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHH
T ss_pred cCCCch-hhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHH
Confidence 766432 223444554 233332 48999999997 46799988888899999887 99
Q ss_pred HHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 158 KVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+|.++|++ +|+++|+|++|+ ++.. +++......|++ |++|+++++.++|++++++++++++....
T Consensus 210 ~i~~l~~~--~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~------ 279 (395)
T 1vef_A 210 AAREITQE--KGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG------ 279 (395)
T ss_dssp HHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS------
T ss_pred HHHHHHHH--cCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC------
Confidence 99999999 999999999998 3211 122223346776 55999987677899999999877665310
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 312 (367)
.+ ..++++...+.++.++++.+.+. +..++..++++++.+.|++++.++....+ ..+.++++.
T Consensus 280 ----------~~--~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~g~~~~~~ 342 (395)
T 1vef_A 280 ----------HG--TTFGGNPLAMAAGVAAIRYLERT---RLWERAAELGPWFMEKLRAIPSPKIREVR--GMGLMVGLE 342 (395)
T ss_dssp ----------SC--CSSTTCHHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTSCCTTEEEEE--EETTEEEEE
T ss_pred ----------cC--CCcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCceEEEE--EEEEEEEEE
Confidence 01 13456776777777788876653 45668888999999999887543321111 234577888
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++. +..++.+.|.+++||.+.++ .++++||++....+.+++
T Consensus 343 ~~~--~~~~l~~~l~~~~gi~v~~~----~~~~iRi~~~~~~~~~~i 383 (395)
T 1vef_A 343 LKE--KAAPYIARLEKEHRVLALQA----GPTVIRFLPPLVIEKEDL 383 (395)
T ss_dssp ESS--CSHHHHHHHHHHHCEECEES----STTEEEECCCTTCCHHHH
T ss_pred EcC--hHHHHHHHHHHHCCeEEecC----CCCEEEEeCCCCCCHHHH
Confidence 853 36789999983459999875 256899987555554443
No 169
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.95 E-value=5.5e-26 Score=210.22 Aligned_cols=257 Identities=15% Similarity=0.118 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-H-HHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-W-IDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~-~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+ +. ++++||++|+..++.+++.+||+|+++.+.|.+.. + ...++..|+++..++.+
T Consensus 113 ~~~~~~l~~~lA~l~g~~--~~-v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 187 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAE--ST-LLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-- 187 (445)
T ss_dssp CHHHHHHHHHHHHHHTCS--EE-EEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS--
T ss_pred ChHHHHHHHHHHHHhCCC--cE-EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC--
Confidence 366789999999999985 33 44566779999999988999999999999877654 2 22456789999999864
Q ss_pred CCCCHHHHHHHHhccCCCCc-cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEe
Q 017726 119 EGAKLDVLASKLAADTAHTI-KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT 197 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~-~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~ 197 (367)
|++++++++++ ++ ++|++++|+||+|.+.|+++|.++|++ +|+++++|++|+.+... .....++|++++
T Consensus 188 ---d~~~l~~ai~~----~tv~lV~le~p~NptG~v~dl~~I~~la~~--~g~~livD~a~~~~~~~-~~~~~g~Div~~ 257 (445)
T 1qgn_A 188 ---DVGALELALNQ----KKVNLFFTESPTNPFLRCVDIELVSKLCHE--KGALVCIDGTFATPLNQ-KALALGADLVLH 257 (445)
T ss_dssp ---CHHHHHHHHHH----SCEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTTTC-CTTTTTCSEEEE
T ss_pred ---CHHHHHHHhcc----CCCCEEEEeCCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCcccccC-CccccCCEEEEE
Confidence 89999999984 66 999999999999999999999999999 99999999999865432 233458999999
Q ss_pred cCCCcccCCCc---ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHH
Q 017726 198 GSQKALSLPTG---MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV 274 (367)
Q Consensus 198 s~~K~~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~ 274 (367)
|+||+++ +.| +|++++++++++++.... + ..|. +++....+.+..+++. +..+
T Consensus 258 S~sK~~g-g~gd~~~G~l~~~~~l~~~l~~~~-------------~-~~g~----~~~~~~a~~~~~~l~~-----l~~r 313 (445)
T 1qgn_A 258 SATKFLG-GHNDVLAGCISGPLKLVSEIRNLH-------------H-ILGG----ALNPNAAYLIIRGMKT-----LHLR 313 (445)
T ss_dssp CTTTTTT-CSSSCCCEEEEECHHHHHHHHHHH-------------H-HHCC----CCCHHHHHHHHHHGGG-----HHHH
T ss_pred CCccccc-ccccceEEEEEECHHHHHHHHHHH-------------H-HhCC----CCCHHHHHHHHHhHHH-----HHHH
Confidence 9999996 444 799999999887765320 0 1121 2343322222223322 4455
Q ss_pred HHHHHHHHHHHHHHHHHc-CC-ccccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccC
Q 017726 275 IERHRRLGKATRLAVEAW-GL-KNCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 275 ~~~~~~~~~~l~~~L~~~-g~-~~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g 337 (367)
.++..++++++.+.|++. ++ .+..|. +. ...+.+++|.++.+. +...+.+.|. ..++.+..|
T Consensus 314 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~-~~~i~~s~G 390 (445)
T 1qgn_A 314 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALK-IPYIAPSFG 390 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCS-SSEECSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCC-CceEeccCC
Confidence 667778889999999887 55 343331 10 014568889984321 1334555442 236666555
No 170
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.95 E-value=7.6e-26 Score=202.83 Aligned_cols=251 Identities=13% Similarity=0.083 Sum_probs=177.6
Q ss_pred HHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCH
Q 017726 46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL 123 (367)
Q Consensus 46 ~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~ 123 (367)
++++.+++++|.+ + .++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|++++.++. .|+
T Consensus 2 ~l~~~la~~~g~~--~-~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~ 73 (331)
T 1pff_A 2 ALEGKIAKLEHAE--A-CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-----AVP 73 (331)
T ss_dssp HHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----TST
T ss_pred hHHHHHHHHhCCC--e-EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----CCH
Confidence 6899999999986 3 445566699999999988899999999999888764 22225668999998876 378
Q ss_pred HHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcc
Q 017726 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKAL 203 (367)
Q Consensus 124 e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~ 203 (367)
++++++++ +++++|++++++||||.+.|+++|.++|++. +|+++++|++|+.+....+. ..+.|++++|+||++
T Consensus 74 ~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~-~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~ 147 (331)
T 1pff_A 74 GNIEKHLK----PNTRIVYFETPANPTLKVIDIEDAVKQARKQ-KDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYI 147 (331)
T ss_dssp THHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTS-SSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTT
T ss_pred HHHHHhhc----CCCeEEEEECCCCCcCcccCHHHHHHHHhhh-cCCEEEEECCCcccccCChh-hcCCcEEEEECcccc
Confidence 89999887 4679999999999999999999999999863 68999999999876654344 457899999999999
Q ss_pred cCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHH
Q 017726 204 SLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRR 280 (367)
Q Consensus 204 ~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~ 280 (367)
+++.+ +|++++++ ++++++....... . .++.+.....++..+++.+ ....++..+
T Consensus 148 ~~~~~r~~G~~~~~~~~~~~~l~~~~~~~--~---------------~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~ 205 (331)
T 1pff_A 148 NGHTDVVAGLVCSRADIIAKVKSQGIKDI--T---------------GAIISPHDAWLITRGTLTL-----DMRVKRAAE 205 (331)
T ss_dssp SSSSSCCCEEEEECHHHHHHHHHTCCCCC--C---------------CCCCCHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhh--c---------------CCCCCHHHHHHHHcCcchH-----HHHHHHHHH
Confidence 87665 69999998 8888776542210 0 1134443333333444432 333445556
Q ss_pred HHHHHHHHHHHc-C--------------CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccC
Q 017726 281 LGKATRLAVEAW-G--------------LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 281 ~~~~l~~~L~~~-g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g 337 (367)
+.+.+.+.|++. . +++..+.. ...+.++.|.++ +.+++.+.|. ++||.++..
T Consensus 206 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~l~-~~gI~~~~~ 272 (331)
T 1pff_A 206 NAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM-KMFGSMIAFDVD---GLEKAKKVLD-NCHVVSLAV 272 (331)
T ss_dssp HHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC-SSCCSEEEEECS---SHHHHHHHHH-TCSSSEECS
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC-CCCceEEEEEEC---CHHHHHHHHH-hCCCceecc
Confidence 666666666653 1 11111100 123457788874 5667777775 569977543
No 171
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.95 E-value=1.5e-26 Score=213.51 Aligned_cols=313 Identities=14% Similarity=0.073 Sum_probs=202.0
Q ss_pred ccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh-cCCC----CceE--EecCChhHHHHHH---HHccCC
Q 017726 13 FVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF-KTTS----GTPF--LIPTTGTGAWESA---LTNTLS 82 (367)
Q Consensus 13 ~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~----~~~v--~~~~ggt~al~~~---~~~~~~ 82 (367)
+.++|+.+.+++.++.. ....+|.......++|+.+++++ +... ++++ ..+.+|++++..+ +.+++.
T Consensus 53 d~~~~~~v~~a~~~a~~---~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~ 129 (409)
T 4eu1_A 53 DDADQPFVLECVKQATL---GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVA 129 (409)
T ss_dssp CTTSCCCCCHHHHTCCC---CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSS
T ss_pred CCCCCEeecHHHHhcCc---cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcC
Confidence 44555555555555511 11223332344568999999986 5541 3346 3488899999865 345678
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH---
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS--- 157 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~--- 157 (367)
+||.|++..|.|.++. ..++..|.+++.++. +.++.+|++++++++++.. ++++++++++|+||||.+++.+
T Consensus 130 ~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~~~~p~NPtG~~~~~~~l~ 206 (409)
T 4eu1_A 130 NCNRIYGPDVGYPNHE--SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP-EGSVILVHACAHNPTGVDPTHDDWR 206 (409)
T ss_dssp SCCEEEEESSCCTHHH--HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSC-TTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred CCCEEEEeCCCcHhHH--HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCC-CCcEEEEECCCCCCCCCCCCHHHHH
Confidence 9999999999887753 567789999999997 3456889999999997532 3567778899999999999854
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCceee------c---c-ccccceEEEecCCCcccCCCc--ceee---eeCHHHHHHh
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAIDF------R---M-DEWGIDVALTGSQKALSLPTG--MGIV---CASPKALEAS 222 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~~------~---~-~~~~~d~~~~s~~K~~~g~~g--~g~~---~~~~~~~~~~ 222 (367)
+|.++|++ +|+++|+|++|+.+...- . . ......+++.|++|.++ .+| +|++ +.+++..+.+
T Consensus 207 ~i~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~riG~~~~v~~~~~~~~~l 283 (409)
T 4eu1_A 207 QVCDVIKR--RNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG-LYGHRCGALHISTASAEEAKRL 283 (409)
T ss_dssp HHHHHHHH--TTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS-CGGGCCEEEEEECSSHHHHHHH
T ss_pred HHHHHHHh--CCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc-CccCCceEEEEEeCCHHHHHHH
Confidence 58888999 999999999987543211 1 1 11234588899999984 445 6885 5667733333
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC----
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG---- 293 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g---- 293 (367)
.... ....... ..+++.....++..++.... ...+++.++++.++++++.+.|+++|
T Consensus 284 ~~~~------------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 349 (409)
T 4eu1_A 284 VSQL------------ALLIRPM--YNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHD 349 (409)
T ss_dssp HHHH------------HHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHH------------HHHHhhh--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2100 0000000 11244544445555554321 12267788899999999999999986
Q ss_pred CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
+.+..+ .++.+.+..+ + .++++.|.+++||.+.++ .||++.. ..++.+...++|.
T Consensus 350 ~~~~~~----~~~~~~~~~~----~-~~~~~~ll~~~gv~v~p~--------~Ri~~~~~~~~~i~~~~~~l~ 405 (409)
T 4eu1_A 350 WSHIER----QVGMMAYTGL----T-REQVELLRSEYHIYMTLN--------GRAAVSGLNSTNVEYVSQAIH 405 (409)
T ss_dssp CHHHHH----SCSSEEECCC----C-HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHH
T ss_pred cceecC----CceEEEEeCC----C-HHHHHHHHHcCCEEEcCC--------CEEEEEecCHhhHHHHHHHHH
Confidence 666555 3554444332 3 356677777779999875 3777644 3334555555554
No 172
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.95 E-value=1.3e-25 Score=206.56 Aligned_cols=285 Identities=11% Similarity=0.121 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
....+++++.+++++|.+. .++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|+++..++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~~---~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-- 155 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGAG---CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-- 155 (415)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred CchHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC--
Confidence 3667899999999999753 456688999999999999999999999999888764 323456679999998764
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ ++||+|++++++||+|.+.|+++|.++|++.++|+++++|++++.+....+. ..++|++++|
T Consensus 156 ---d~~~le~ai~----~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~Div~~S 227 (415)
T 2fq6_A 156 ---IGADIVKHLQ----PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGIDVSIQA 227 (415)
T ss_dssp ---CGGGGGGGCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTCSEEEEE
T ss_pred ---CHHHHHHhhc----cCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCCeEEEEe
Confidence 7899999987 4679999999999999999999999999874468999999999854322222 3579999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+||+++++.+ .|+++.++++++++... . ...|+ ..+....+.+..+++. +..+.+
T Consensus 228 ~sK~lg~~g~~~~G~l~~~~~~~~~l~~~-------------~-~~~G~----~~~~~~a~~~~~~l~~-----l~~r~~ 284 (415)
T 2fq6_A 228 ATKYLVGHSDAMIGTAVCNARCWEQLREN-------------A-YLMGQ----MVDADTAYITSRGLRT-----LGVRLR 284 (415)
T ss_dssp TTTTTTCSSSCCCEEEEECTTTHHHHHHH-------------H-HHTTC----CCCHHHHHHHHHHHHH-----HHHHHH
T ss_pred CccccCCCCCceEEEEEeCHHHHHHHHHH-------------H-HhcCC----CCCHHHHHHHHhhhhH-----HHHHHH
Confidence 9999975543 59999998877666532 0 01122 2333222222223333 345566
Q ss_pred HHHHHHHHHHHHHHHc-CCcc-ccCC----Cc--------cCCCceEEEEcCCCC---CHHHHHHHHHhhCCeEEccCCC
Q 017726 277 RHRRLGKATRLAVEAW-GLKN-CTQK----EE--------WFSDTVTAVIVPSHI---NSSEIVRRAWQRYNLSLGLGLN 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~-~~~~----~~--------~~~~~~~~~~~~~~~---~~~~l~~~L~~~~gv~v~~g~~ 339 (367)
+..+++..+.+.|++. .+.. ..|. +. ...+.+++|.++.+. +...+.+.| +..++.+..|..
T Consensus 285 ~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l-~~~~~a~s~G~~ 363 (415)
T 2fq6_A 285 QHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNF-SLFSMAYSWGGY 363 (415)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTC-SSCEECSCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhC-CcCeEeccCCCC
Confidence 7788888899998886 3321 1111 10 124568899985321 233344433 233455554411
Q ss_pred ---------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ---------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ---------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
...++.||+|+ +..+.+|++..+
T Consensus 364 ~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~-G~e~~~d~i~~l 407 (415)
T 2fq6_A 364 ESLILANQPEHIAAIRPQGEIDFSGTLIRLHI-GLEDVDDLIADL 407 (415)
T ss_dssp SCEEEEECHHHHHTTCTTCCCCCCSCEEEEEC-CSSCHHHHHHHH
T ss_pred ceeEEecCCCccccccchhhcCCCCCEEEEEe-cCCCHHHHHHHH
Confidence 11246799994 666666555444
No 173
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.95 E-value=6.6e-26 Score=210.19 Aligned_cols=290 Identities=13% Similarity=0.048 Sum_probs=200.2
Q ss_pred CChHHHHHHHccCCCCCCCCcH-HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAV-PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~ 97 (367)
+.|+.+++++.+...... |.. .....++++.++++++.+ ++++++||++|+..++.++. +||+|+++.++|++.
T Consensus 29 ~~p~~~~~a~~~~~~~~~-y~~~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~ 103 (424)
T 2po3_A 29 IDRARLYERLDRALDSQW-LSNGGPLVREFEERVAGLAGVR---HAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAAT 103 (424)
T ss_dssp CCHHHHHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHH
T ss_pred CChHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHH
Confidence 446788888776543222 222 467889999999999874 48999999999999998864 789999999998876
Q ss_pred HHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 98 LWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 98 ~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
. ..++..|++++.++.++ ++.+|+++++++++ +++++|++++ |+|...++++|.++|++ +|+++|+|+
T Consensus 104 ~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~---~tG~~~~l~~i~~la~~--~~~~li~De 172 (424)
T 2po3_A 104 P--HALRWIGLTPVFADIDPDTGNLDPDQVAAAVT----PRTSAVVGVH---LWGRPCAADQLRKVADE--HGLRLYFDA 172 (424)
T ss_dssp H--HHHHHTTCEEEEECBCTTTSSBCHHHHGGGCC----TTEEEEEEEC---GGGCCCCHHHHHHHHHH--TTCEEEEEC
T ss_pred H--HHHHHcCCEEEEEecCCCcCCcCHHHHHHhhC----cCCcEEEEEC---CCCCcCCHHHHHHHHHH--cCCEEEEEC
Confidence 4 45677899999999876 56789999999887 4679998864 79999999999999999 999999999
Q ss_pred eeccCceeeccccc--cceEEEecCC--CcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 177 VSSICAIDFRMDEW--GIDVALTGSQ--KALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 177 ~~~~~~~~~~~~~~--~~d~~~~s~~--K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
+|+.+.. ++.... ..|++++|+| |++++ .++|+++.+ +++++++...........+ .....+. .+..
T Consensus 173 a~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~----~~~~~g~--~~~~ 244 (424)
T 2po3_A 173 AHALGCA-VDGRPAGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPG----GSPAGGT--NAKM 244 (424)
T ss_dssp TTCTTCE-ETTEETTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTT----CCTTCCC--BCCC
T ss_pred ccccCCe-ECCeecccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCccccc----cccccCc--CCCc
Confidence 9996543 221111 1478888877 98875 446999998 7887776542111000000 0000010 1112
Q ss_pred cHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc-CCCccCCCceEEEEcCC---CCCHHHHHHHH
Q 017726 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT-QKEEWFSDTVTAVIVPS---HINSSEIVRRA 326 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~l~~~L 326 (367)
+.. +...++.. ..++++..++..++++++.+.|+++ |+.+.. +........++.+.+++ +.+..++.+.|
T Consensus 245 ~~~---~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L 319 (424)
T 2po3_A 245 SEA---AAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVL 319 (424)
T ss_dssp CHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHH
T ss_pred CHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHH
Confidence 221 12222222 2236677888888999999999887 777765 22211222456577753 56788999988
Q ss_pred HhhCCeEEccCC
Q 017726 327 WQRYNLSLGLGL 338 (367)
Q Consensus 327 ~~~~gv~v~~g~ 338 (367)
.+ +||.+.+.+
T Consensus 320 ~~-~gI~v~~~~ 330 (424)
T 2po3_A 320 KA-EGVHTRAYF 330 (424)
T ss_dssp HH-TTEECBCTT
T ss_pred HH-CCCceeccc
Confidence 65 599998744
No 174
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.95 E-value=4.4e-26 Score=209.18 Aligned_cols=293 Identities=15% Similarity=0.082 Sum_probs=204.1
Q ss_pred ChHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC----------CCe
Q 017726 20 IPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP----------GDR 86 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~----------gd~ 86 (367)
.++.+.+++.+.... +. .....+...++++++++++| .+.+++++||++|+..++..+..+ +++
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~ 129 (392)
T 3ruy_A 53 RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAE 129 (392)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCE
T ss_pred CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcE
Confidence 357777777764322 11 11223567899999999998 335999999999999988765433 679
Q ss_pred EEEEeCCcchHHHHHHHHHhCC------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
|++..+.|++.... .....+. .+..++.+ |+++++++++ +++++|++++++||||.+.
T Consensus 130 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~nptG~~~ 199 (392)
T 3ruy_A 130 IIVCEDNFHGRTMG-AVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAIT----PNTAAFILEPIQGEAGINI 199 (392)
T ss_dssp EEEETTCCCCSSHH-HHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCC----TTEEEEEECSSBSTTTSBC
T ss_pred EEEEcCCcCCCCHh-hhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhc----cCeEEEEEeCccCCCCCcc
Confidence 99999988775421 1111111 23344432 7999999997 4789999999999999999
Q ss_pred c----HHHHHHHHHhcCCCcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhcc
Q 017726 155 N----LSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT 224 (367)
Q Consensus 155 ~----~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~ 224 (367)
| +++|.++|++ +|+++|+|++|+... ...+......|++++ +|+++|. .++|++++++++++.+..
T Consensus 200 ~~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~--SK~l~gG~~~~G~~~~~~~~~~~~~~ 275 (392)
T 3ruy_A 200 PPAGFLKEALEVCKK--ENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYIL--GKALGGGVFPISCAAANRDILGVFEP 275 (392)
T ss_dssp CCTTHHHHHHHHHHT--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTTSCCEEEEECHHHHTTCCT
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEeechhCCCccccchhhhccCCCCCEEEE--chhhhCChhhhEEEEECHHHHhhhcc
Confidence 8 9999999999 999999999996321 112222334677766 5988763 447999999998876654
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
... +. .++.+...+.++.++++.+.. ++..++..++++++.+.|++++........ .
T Consensus 276 ~~~----------------~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~ 332 (392)
T 3ruy_A 276 GSH----------------GS--TFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVR--G 332 (392)
T ss_dssp TSS----------------CC--SSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE--E
T ss_pred CCc----------------CC--CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEE--e
Confidence 311 11 446777777777778887655 356778899999999999887533222111 1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.++++.++. +..++.+.|.+ +||.+.++. ++++|+++....+.+++
T Consensus 333 ~g~~~~~~~~~--~~~~l~~~l~~-~gi~v~~~~----~~~iRi~~~~~~~~~~i 380 (392)
T 3ruy_A 333 KGLFIGIELNE--PARPYCEQLKA-AGLLCKETH----ENVIRIAPPLVISEEDL 380 (392)
T ss_dssp ETTEEEEEESS--CSHHHHHHHHT-TTEECCCBT----TTEEEECCCTTCCHHHH
T ss_pred eeeEEEEEEcc--hHHHHHHHHHH-CCcEEecCC----CCEEEEECCCCCCHHHH
Confidence 23466666743 67899999974 599998754 47899996555554443
No 175
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.95 E-value=1.5e-26 Score=215.51 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
...+++++++++++|.+ ++++++||++|+..++. ++.+||+|+++.+.|.+.. +...++..|++++.++.+
T Consensus 133 ~~~~~l~~~la~~~g~~---~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 205 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD---RAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT--- 205 (464)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC---
Confidence 46889999999999965 36777888999988775 7899999999999887764 223456789999999874
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++++|++++|+||||.+.|+++|.++|++ +|+++|+|++|+.+....+. ..++|+++.|+
T Consensus 206 --d~~~l~~~i~----~~tk~v~l~~p~NptG~v~~l~~i~~la~~--~gi~livDea~~~g~~~~~~-~~~~div~~S~ 276 (464)
T 1ibj_A 206 --KLDEVAAAIG----PQTKLVWLESPTNPRQQISDIRKISEMAHA--QGALVLVDNSIMSPVLSRPL-ELGADIVMHSA 276 (464)
T ss_dssp --SHHHHHHHCC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHT--TTCEEEEECTTTCTTTCCGG-GTTCSEEEEET
T ss_pred --CHHHHHHHhc----cCceEEEEeCCCCCCCEeecHHHHHHHHHH--cCCEEEEECCCcccccCChh-hcCCEEEEECC
Confidence 8999999997 478999999999999999999999999999 99999999999876542222 25789999999
Q ss_pred CCcccCCCcc--eeeeeCH-HHHHHhc
Q 017726 200 QKALSLPTGM--GIVCASP-KALEASK 223 (367)
Q Consensus 200 ~K~~~g~~g~--g~~~~~~-~~~~~~~ 223 (367)
||+++|+.|+ |++++++ ++++++.
T Consensus 277 sK~~~g~~Gl~~G~l~~~~~~l~~~l~ 303 (464)
T 1ibj_A 277 TKFIAGHSDVMAGVLAVKGEKLAKEVY 303 (464)
T ss_dssp TTTTTCSSCCCCEEEEECSHHHHHHHH
T ss_pred cccccCCCCCcEEEEEEChHHHHHHHH
Confidence 9999887765 9999985 6766665
No 176
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.95 E-value=7e-26 Score=207.87 Aligned_cols=281 Identities=16% Similarity=0.162 Sum_probs=198.2
Q ss_pred HHHHHHHccCCCC------CCCCcH-HHHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHHccCCCCCeEEEEe-
Q 017726 22 DQVIRAMNRNNED------YRSPAV-PALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFL- 91 (367)
Q Consensus 22 ~~v~~a~~~~~~~------~~~~~~-~~~~~~~~~~la~~~~~~~~~~v~~--~~ggt~al~~~~~~~~~~gd~vl~~~- 91 (367)
++|++++.+.... ..++.+ ....+++++.+++++|.+. .+++ ++||++|+..++.++++|||+|++.+
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~ 124 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGNLRPNDTMMSICG 124 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHTCCTTCEEEECSS
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 5677887774221 111211 1247899999999999875 3443 78999999999999999999999998
Q ss_pred CCcchHH-HH--------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe----cCCCccccccHHH
Q 017726 92 IGQFSLL-WI--------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSK 158 (367)
Q Consensus 92 ~~~~~~~-~~--------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~----~~n~tG~~~~~~~ 158 (367)
+.|.+.. +. ..++..|++++.++. +++.+|+++++++++++ +++|+|++++ |+||+|.+.|+++
T Consensus 125 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~--~~tklV~i~~s~gyp~nptg~v~dl~~ 201 (427)
T 3hvy_A 125 MPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKD--DSIKLIHIQRSTGYGWRKSLRIAEIAE 201 (427)
T ss_dssp SCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHC--TTEEEEEEESSCCSSSSCCCCHHHHHH
T ss_pred CCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCC--CCCEEEEEECCCCCCCCccccHHHHHH
Confidence 7676653 21 234567999999998 67889999999999842 2679999999 9999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccC---CCcceeeeeCHHHHHHhccCCC-Cceeech
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL---PTGMGIVCASPKALEASKTAKS-VRVFFDW 234 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g---~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~ 234 (367)
|.++|++.++|+++++|++|+.+.........++|++++|+||+++| +.| |++++++++++++..... ...
T Consensus 202 i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~~~li~~l~~~~~~~~~---- 276 (427)
T 3hvy_A 202 IIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQATFRVTVPGI---- 276 (427)
T ss_dssp HHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHHHHHHHSCTTT----
T ss_pred HHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceE-EEEEECHHHHHHHHHHhhcCCc----
Confidence 99999985569999999999876633333345789999999999976 344 999999999988875211 100
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
+. ...++......+...+.. +..+.++..+++.++.+.|+++|+.+.+.....+...++.|.+.
T Consensus 277 ---------g~--~~~~~~~~a~~~~~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 277 ---------GG--ECGSTFGVMRSLYEGLFM-----APHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFN 340 (427)
T ss_dssp ---------GG--GCCCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECS
T ss_pred ---------cc--ccCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCC
Confidence 00 001111101122222222 34577788999999999999998877543222233337778874
Q ss_pred CCCCHHHHHHHHHh
Q 017726 315 SHINSSEIVRRAWQ 328 (367)
Q Consensus 315 ~~~~~~~l~~~L~~ 328 (367)
+.....++++.|..
T Consensus 341 ~~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 341 DEKKLIDFIKGIQT 354 (427)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 32234567777754
No 177
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.95 E-value=4.3e-25 Score=202.22 Aligned_cols=254 Identities=13% Similarity=0.069 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+ + .++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|++++.++..
T Consensus 58 ~~~~~~l~~~la~~~g~~--~-~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 132 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA--G-SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTS-- 132 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHhCCC--e-EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC--
Confidence 466789999999999976 3 566678899999999988999999999999888753 334467889999999863
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|+++.|
T Consensus 133 ---d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~--~~~~livD~~~~~~~~~~~~-~~~~di~~~S 202 (389)
T 3acz_A 133 ---DVEKVKAAWK----PNTKMVYLESPANPTCKVSDIKGIAVVCHE--RGARLVVDATFTSPCFLKPL-ELGADIALHS 202 (389)
T ss_dssp ---CHHHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTCTTTCCGG-GTTCSEEEEE
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCccccccCcc-ccCCeEEEEC
Confidence 8999999987 467999999999999999999999999999 99999999999865432222 2579999999
Q ss_pred CCCcccCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++++.+ .|++++++ ++++++.... .. .|. +.+....++...+++ .+....
T Consensus 203 ~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~-------------~~-~g~----~~~~~~~~~~~~~l~-----~l~~r~ 259 (389)
T 3acz_A 203 VSKYINGHGDVIGGVSSAKTAEDIATIKFYR-------------KD-AGS----LMAPMDAFLCARGMK-----TLPIRM 259 (389)
T ss_dssp TTTTTTCSSCCCCEEEEESSHHHHHHHHHHH-------------HH-HCC----CCCHHHHHHHHHHHT-----THHHHH
T ss_pred ChhhccCCCCceeEEEEECcHHHHHHHHHHH-------------Hh-cCC----CCCHHHHHHHHcCcc-----HHHHHH
Confidence 9999987765 49999998 8877765321 00 121 233322222222332 244556
Q ss_pred HHHHHHHHHHHHHHHHcC-Ccc-ccC----CCc--------cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 017726 276 ERHRRLGKATRLAVEAWG-LKN-CTQ----KEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~g-~~~-~~~----~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~ 336 (367)
++..+++..+.+.|++.+ +.- ..+ .+. ...+.++.|.++ + .+++.+.| ++.++.++.
T Consensus 260 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~-~--~~~~~~~l-~~~~i~~~~ 330 (389)
T 3acz_A 260 QIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-S--FEAAKKLM-EHLKVCTLA 330 (389)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-S--HHHHHHHH-TTCSSSEEB
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC-C--HHHHHHHH-HhCCCcEEC
Confidence 677778888888888752 111 111 000 012457788884 3 45555555 556887765
No 178
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.95 E-value=1.7e-27 Score=218.26 Aligned_cols=313 Identities=11% Similarity=-0.040 Sum_probs=206.4
Q ss_pred cccccCCCC--CChHHHHHHHccCC--C---CCCCCcHHHHH-----HHHHHHHHHHhcC-----CCCceEEecCChhHH
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNN--E---DYRSPAVPALT-----KTLLEDIKKIFKT-----TSGTPFLIPTTGTGA 72 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~--~---~~~~~~~~~~~-----~~~~~~la~~~~~-----~~~~~v~~~~ggt~a 72 (367)
.+.+..|.+ +.++.+.+++.+.. . ...+|...... .++|+.++++++. .++++|++|+|++++
T Consensus 24 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~a 103 (391)
T 3bwn_A 24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQL 103 (391)
T ss_dssp CEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHH
T ss_pred eeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHH
Confidence 455555443 33555666653321 1 12233333333 7899999999873 233469999999999
Q ss_pred HHHHHHccCCCCC----eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCC
Q 017726 73 WESALTNTLSPGD----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNET 148 (367)
Q Consensus 73 l~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n 148 (367)
+..++.+++.+|| .|+++.|.|.++. ..++..|++++.++.+.++ ++ . +++|+|++++|||
T Consensus 104 l~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~d~~~-l~--------~----~~~k~v~l~~p~N 168 (391)
T 3bwn_A 104 CQAAVHALSSLARSQPVSVVAAAPFYSTYV--EETTYVRSGMYKWEGDAWG-FD--------K----KGPYIELVTSPNN 168 (391)
T ss_dssp HHHHHHHHHHTSSSSSEEEEECSSCCTHHH--HHHHTTCBTTEEEEEESTT-CC--------C----CSCEEEEEESSCT
T ss_pred HHHHHHHhcCCCCCCcceEEEcCCCchhHH--HHHHHcCCeEEEecCCHHH-cC--------C----CCCEEEEECCCCC
Confidence 9999999989999 9999999887643 5577889999888876432 21 1 4679999999999
Q ss_pred CccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-eeccccccceEEEecCCCcccCCCc--ceeeee-CHHHHHHhcc
Q 017726 149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSLPTG--MGIVCA-SPKALEASKT 224 (367)
Q Consensus 149 ~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-~~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~ 224 (367)
|||.+++ +|++ +++.++++||+|++|..... ++.. ..+.++++.|+||.+ |++| +|++++ ++++++++..
T Consensus 169 PtG~~~~--~l~~--~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l~~ 242 (391)
T 3bwn_A 169 PDGTIRE--TVVN--RPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKIT-GHAGSRIGWALVKDKEVAKKMVE 242 (391)
T ss_dssp TTCCCCC--CCC-------CCCEEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHHH-SCGGGCEEEEEECCHHHHHHHHH
T ss_pred CCchhHH--HHHH--HhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEEEEechhhc-CCCccceEEEEecCHHHHHHHHH
Confidence 9999996 3433 22224599999999975321 2221 235789999999988 4666 499997 8888877764
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH---------HhChHHHHHHHHHHHHHHHHHHHHc-CC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF---------EEGLENVIERHRRLGKATRLAVEAW-GL 294 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~---------~~g~~~~~~~~~~~~~~l~~~L~~~-g~ 294 (367)
.. ... .++++.....++..+++... +..+++++++++++++.+.+.|+++ ++
T Consensus 243 ~~-------------~~~-----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 304 (391)
T 3bwn_A 243 YI-------------IVN-----SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAF 304 (391)
T ss_dssp HH-------------HHH-----HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred Hh-------------ccc-----ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 21 000 12355555555666665532 2237888999999999999999997 66
Q ss_pred ccccCCCcc---------CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-CcEEEEeecCCCCHHHHHHhhh
Q 017726 295 KNCTQKEEW---------FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-GKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 295 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~-~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.+..+.+.. ..+.++++++++ .+.+.+.| +++||.+.+|..+.. .+++|||+....++.+...+.|
T Consensus 305 ~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~---~~~~~~~l-~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L 380 (391)
T 3bwn_A 305 TLPKYPEAFCNYFGKSLESYPAFAWLGTKE---ETDLVSEL-RRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERL 380 (391)
T ss_dssp ECCCCCCEEETTTTEEECCCCSEEEEEESS---SCCHHHHH-HHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHH
T ss_pred ccccCCccccccccccCCCcceEEEecCCc---HHHHHHHH-HHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 665442221 233467888853 23455555 566999999865433 5689999875333345555555
Q ss_pred h
Q 017726 365 F 365 (367)
Q Consensus 365 ~ 365 (367)
.
T Consensus 381 ~ 381 (391)
T 3bwn_A 381 A 381 (391)
T ss_dssp H
T ss_pred H
Confidence 4
No 179
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.95 E-value=7.6e-26 Score=207.36 Aligned_cols=317 Identities=12% Similarity=0.029 Sum_probs=209.5
Q ss_pred CcccccCC-------CCCChHHHHHHHccCC---CCCCCCcHHHHHHHHHHHHHHHhc-CC----CCc--eEEecCChhH
Q 017726 9 KNHLFVPG-------PVHIPDQVIRAMNRNN---EDYRSPAVPALTKTLLEDIKKIFK-TT----SGT--PFLIPTTGTG 71 (367)
Q Consensus 9 ~~~~~~~~-------p~~~~~~v~~a~~~~~---~~~~~~~~~~~~~~~~~~la~~~~-~~----~~~--~v~~~~ggt~ 71 (367)
+.+++.-| +.++++.+.+++. .. .....|....+..++|+.+++++. .. .++ ++++|+|+++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 45666654 2456788888854 21 122234444566789999988873 21 122 3689999999
Q ss_pred HHHHHHHccCC--CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-CC-CCCCCHHHHHHHHhccCCCCccEEEEEec-
Q 017726 72 AWESALTNTLS--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DW-GEGAKLDVLASKLAADTAHTIKAICIVHN- 146 (367)
Q Consensus 72 al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~- 146 (367)
|+.+++.++.. | |.|++++|.|..+. ..++..|.+++.+++ ++ ++.+|++++++++++. +++++++++++
T Consensus 109 al~~~~~~l~~~~~-d~Vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~i~l~~~~ 183 (405)
T 3k7y_A 109 AIFVLLEFLKMLNV-ETLYVTNPPYINHV--NMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI--PNGSSVILQISC 183 (405)
T ss_dssp HHHHHHHHHHTTTC-CEEEEESSCCHHHH--HHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS--CSSCEEEECCSS
T ss_pred HHHHHHHHHHhcCC-CEEEEeCCCCHhHH--HHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC--CCCeEEEEeCCC
Confidence 99999888766 8 99999999877653 567889999999997 33 4789999999999753 25678888765
Q ss_pred CCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee--------e-cc-ccccceEEEecCCCccc-CCCcceee
Q 017726 147 ETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID--------F-RM-DEWGIDVALTGSQKALS-LPTGMGIV 212 (367)
Q Consensus 147 ~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~--------~-~~-~~~~~d~~~~s~~K~~~-g~~g~g~~ 212 (367)
|||||.+++ +++|.++|++ ++++||+|++|...... + .+ ......+++.|+||.++ ...++|++
T Consensus 184 ~NPTG~~~s~~~~~~l~~~~~~--~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~ 261 (405)
T 3k7y_A 184 YNPCSVNIEEKYFDEIIEIVLH--KKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGAL 261 (405)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHH--HCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHH--CCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEE
Confidence 899999997 5567788888 99999999998744321 0 00 11235688999999995 23336987
Q ss_pred ee---CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH---HH--hChHHHHHHHHHHHHH
Q 017726 213 CA---SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI---FE--EGLENVIERHRRLGKA 284 (367)
Q Consensus 213 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~---~~--~g~~~~~~~~~~~~~~ 284 (367)
++ ++++++++.... ....... ...++.....++..++..- .+ ..++++++++.++++.
T Consensus 262 ~~~~~~~~~~~~~~~~l------------~~~~~~~--~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~ 327 (405)
T 3k7y_A 262 HIVCKNQEEKKIVFNNL------------CFIVRKF--YSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRIL 327 (405)
T ss_dssp EEECSSHHHHHHHHHHH------------HHHHHTT--TSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHH------------HHHHhcc--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 666655543210 0010011 1124444333444444321 11 1266778889999999
Q ss_pred HHHHHH----HcC----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCC
Q 017726 285 TRLAVE----AWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLN 355 (367)
Q Consensus 285 l~~~L~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~ 355 (367)
+.+.|+ ++| +.+..+ .+++++|+.++ .+++++| +++||.+.|+. ||++.+ ..+
T Consensus 328 l~~~L~~~~~~~g~~~~~~~~~p----~gg~f~~~~l~-----~~~~~~L-~~~gV~v~p~~--------Ris~a~~~~~ 389 (405)
T 3k7y_A 328 FFNKLETYQKKYNLNYDWNVYKK----QRGLFSFVPLL-----AKIAEHL-KTHHIYIINNG--------RINVSGITKN 389 (405)
T ss_dssp HHHHHHHHGGGGTCCCCGGGGSS----CCSSEEECGGG-----GGGTTTT-TTTTEECCTTS--------EEEGGGCCTT
T ss_pred HHHHHHhhhhhcCCCCCCccccC----CceEEEecCCC-----HHHHHHH-HHCCEeecCCC--------eEEEeccCHH
Confidence 999999 776 466665 56666666553 2556778 78899998852 999866 455
Q ss_pred HHHHHHhhhh
Q 017726 356 EVMFNFQLLF 365 (367)
Q Consensus 356 ~~~~~~~~l~ 365 (367)
+.+...++|.
T Consensus 390 ~i~~~~~~i~ 399 (405)
T 3k7y_A 390 NVDYIADKIC 399 (405)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566555554
No 180
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=3.2e-25 Score=203.08 Aligned_cols=254 Identities=17% Similarity=0.091 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++++.+ +.+++ +||++|+..++.+++.+||+|++..+.|++.. +...++..|+++..++.+
T Consensus 52 ~~~~~l~~~la~~~~~~--~~i~~-~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 125 (386)
T 1cs1_A 52 PTRDVVQRALAELEGGA--GAVLT-NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG--- 125 (386)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEE-SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT---
T ss_pred ccHHHHHHHHHHHhCCC--cEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC---
Confidence 56789999999999986 44555 66699999999988899999999999888743 334456789999988864
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+....+. ..++|+++.|+
T Consensus 126 --d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~~~~-~~~~di~~~s~ 196 (386)
T 1cs1_A 126 --DEQALRAALA----EKPKLVLVESPSNPLLRVVDIAKICHLARE--VGAVSVVDNTFLSPALQNPL-ALGADLVLHSC 196 (386)
T ss_dssp --CHHHHHHHHH----TCCSEEEEECSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTTTCCGG-GGTCSEEEEET
T ss_pred --CHHHHHHhhc----cCCcEEEEeCCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCcccccCCcc-ccCceEEEEcC
Confidence 8999999998 467999999999999999999999999999 99999999999877654333 35789999999
Q ss_pred CCcccCCCcc--eeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTGM--GIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
||+++++.+. |++++++ ++++++.... .. .+ ++.+....++...+++. +....+
T Consensus 197 sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~------------~~--~~----~~~~~~~~~~~~~~l~~-----~~~~~~ 253 (386)
T 1cs1_A 197 TKYLNGHSDVVAGVVIAKDPDVVTELAWWA------------NN--IG----VTGGAFDSYLLLRGLRT-----LVPRME 253 (386)
T ss_dssp TTTTTCSSCCCCEEEEESSHHHHHHHHHHH------------HH--HT----CBCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred cccccCCCCceeEEEEeCcHHHHHHHHHHH------------Hh--cC----CCCCHHHHHHHHhcccH-----HHHHHH
Confidence 9999777653 9999986 7777665321 00 01 12444332333333332 445566
Q ss_pred HHHHHHHHHHHHHHHc-CCccc-cCC------------CccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 017726 277 RHRRLGKATRLAVEAW-GLKNC-TQK------------EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~ 336 (367)
+..++.+.+.+.|+++ .+... .+. .....+.++.|.++ + ..+++.+.|. +.||.++.
T Consensus 254 ~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~-~~gi~~~~ 324 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD-G-DEQTLRRFLG-GLSLFTLA 324 (386)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-S-CHHHHHHHHH-TCSSSEEB
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC-C-CHHHHHHHHH-hCCcceEc
Confidence 7777888888888775 22111 110 00123457778874 3 2567777775 56998874
No 181
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.95 E-value=5.6e-26 Score=208.53 Aligned_cols=285 Identities=15% Similarity=0.133 Sum_probs=201.0
Q ss_pred HHHHHHHccCCC------CCCCCcH-HHHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHHccCCCCCeEEEEe-
Q 017726 22 DQVIRAMNRNNE------DYRSPAV-PALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFL- 91 (367)
Q Consensus 22 ~~v~~a~~~~~~------~~~~~~~-~~~~~~~~~~la~~~~~~~~~~v~~--~~ggt~al~~~~~~~~~~gd~vl~~~- 91 (367)
.+|++++.+... ...++.+ .....++++.+++++|.+. .+++ ++||++|+..++.++++|||+|++.+
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~ 123 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTES--ALVRPHFVNGTHALGAALFGNLRPGNTMLSVCG 123 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHHCCTTCEEEESSS
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcc--eEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 457888876321 1111211 1347889999999999875 3453 78999999999999999999999998
Q ss_pred CCcchHH-HH--------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe----cCCCccccccHHH
Q 017726 92 IGQFSLL-WI--------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSK 158 (367)
Q Consensus 92 ~~~~~~~-~~--------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~----~~n~tG~~~~~~~ 158 (367)
+.|.+.. .. ..++..|++++.++.++++.+|++++++++++. +++|+|++++ |+||+|.+.|+++
T Consensus 124 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~--~~tklV~i~~s~~~p~nptg~i~dl~~ 201 (427)
T 3i16_A 124 EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED--ESITLVHIQRSTGYGWRRALLIEDIKS 201 (427)
T ss_dssp SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC--TTEEEEEEECSCCSSSSCCCCHHHHHH
T ss_pred CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC--CCCEEEEEEcCCCCCCCCcccHHHHHH
Confidence 7776654 22 334567999999999888889999999999842 2679999999 9999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCC--CcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP--TGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~--~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
|.++|++.++|+++++|++|+.+.........++|++++|+||+++|+ +..|++++++++++++........
T Consensus 202 i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~------ 275 (427)
T 3i16_A 202 IVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPG------ 275 (427)
T ss_dssp HHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT------
T ss_pred HHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCc------
Confidence 999999866799999999998766333344457999999999999762 224999999999988875211000
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
.+. ...+... +...+++.+.. +..++++..+++.++.+.|+++|+.+.+.....+...++.|.+.+.
T Consensus 276 ------~g~--~~~~~~~---~a~~~l~gl~~--~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~~ 342 (427)
T 3i16_A 276 ------IGG--ECGSTFG---VVRSMYQGLFL--APHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFNDK 342 (427)
T ss_dssp ------TGG--GCCCCTT---CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSSH
T ss_pred ------cCc--cCCccHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECCH
Confidence 010 0011111 01222222222 3567788999999999999999887754322112333777887433
Q ss_pred CCHHHHHHHHHhh
Q 017726 317 INSSEIVRRAWQR 329 (367)
Q Consensus 317 ~~~~~l~~~L~~~ 329 (367)
....++++.|...
T Consensus 343 ~~~~~f~~~l~~~ 355 (427)
T 3i16_A 343 DKLIEFCKGIQTG 355 (427)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc
Confidence 3345688888643
No 182
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.95 E-value=1.2e-25 Score=207.25 Aligned_cols=294 Identities=14% Similarity=0.114 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+. .++++||++|+..++.+++.+||+|++..+.|++.. +...++..|++++.++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~~---~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-- 155 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGALG---VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-- 155 (430)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred CHHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC--
Confidence 3667899999999999754 466678899999999999999999999999887764 333677889999999876
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+.. .+....++|+++.|
T Consensus 156 ---d~~~l~~ai~----~~t~~v~~e~p~NptG~~~dl~~i~~la~~--~g~~livD~a~~~~~~-~~~~~~g~div~~S 225 (430)
T 3ri6_A 156 ---DSLAVEHACD----ETTKLLFLETISNPQLQVADLEALSKVVHA--KGIPLVVDTTMTPPYL-LEAKRLGVDIEVLS 225 (430)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHT--TTCCEEEECTTSCTTT-CCGGGGTCSEEEEE
T ss_pred ---CHHHHHHhhC----CCCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCccccc-CChHHcCCEEEEEC
Confidence 8999999997 477999999999999999999999999999 9999999999987665 34445689999999
Q ss_pred CCCcccCCC-c-ceeeeeCHH--HHHHhccCCCCcee-----ech-HHHHH--HhhcCCccCCCCcHHHHHHHHHHHHHH
Q 017726 199 SQKALSLPT-G-MGIVCASPK--ALEASKTAKSVRVF-----FDW-KDYIK--FYNLGTFWPYTPSIQLLYGLRAALDLI 266 (367)
Q Consensus 199 ~~K~~~g~~-g-~g~~~~~~~--~~~~~~~~~~~~~~-----~~~-~~~~~--~~~~~~~~~~~~~~~~~~al~~al~~~ 266 (367)
++|+++|+. + .|+++.+.+ +.. ..+..... ..+ ..... ....|. +++....+.+...++.
T Consensus 226 ~sK~l~g~g~~~gG~vv~~~~~~~~~---~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~----~~~~~~a~l~l~~l~~- 297 (430)
T 3ri6_A 226 STKFISGGGTSVGGVLIDHGLFEWKS---LPSLAPYYAKAGPMAFLYKARKEVFQNLGP----SLSPHNAYLQSLGLET- 297 (430)
T ss_dssp CCCEEETTEEECCEEEEECSCSCGGG---STTTHHHHHHHGGGHHHHHHHHTHHHHHCC----CCCHHHHHHHHHHHHH-
T ss_pred CcccccCCCCceEEEEEECChHHhhh---ccchhhhhhhhchhhHHHHHHHHHHHhcCC----CCCHHHHHHHHhhhhh-
Confidence 999997652 1 266663322 200 00000000 000 00000 001121 2333222222222222
Q ss_pred HHhChHHHHHHHHHHHHHHHHHHHHc-CCc-cccCC-Cc-----------cCCCceEEEEcCCCCCHHHHHHHHHhhCCe
Q 017726 267 FEEGLENVIERHRRLGKATRLAVEAW-GLK-NCTQK-EE-----------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL 332 (367)
Q Consensus 267 ~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv 332 (367)
+..+.++..+++..+.+.|++. ++. +..|. +. ..++++++|.+++..+..+|.+.|+ ..++
T Consensus 298 ----l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~-~~~~ 372 (430)
T 3ri6_A 298 ----MALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALK-LIRR 372 (430)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCS-SSEE
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCC-ccee
Confidence 4556778889999999999886 554 33232 11 0133389999852223445555553 3455
Q ss_pred EEccCCC-----------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 333 SLGLGLN-----------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 333 ~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
.+..|.. ...++.||+| .+.++.+|+...+
T Consensus 373 ~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRls-vG~E~~~dl~~dl 425 (430)
T 3ri6_A 373 ATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLS-VGIEEIEDLKEDI 425 (430)
T ss_dssp CSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEE-CCSSCHHHHHHHH
T ss_pred cCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHH
Confidence 5544421 1234679999 4777777766554
No 183
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.95 E-value=1.1e-25 Score=206.10 Aligned_cols=284 Identities=15% Similarity=0.091 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+ .+++++||++|+..++.+++.+||+|++..+.|++.. +...++..|+++..++.+
T Consensus 65 ~~~~~~l~~~la~~~g~~---~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 139 (392)
T 3qhx_A 65 NPTRTALEAALAAVEDAA---FGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-- 139 (392)
T ss_dssp CHHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC--
Confidence 366789999999999976 3788899999999999988999999999999888754 334446789999999875
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+.. ......++|+++.|
T Consensus 140 ---d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~g~~li~D~~~~~~~~-~~~~~~~~di~~~S 209 (392)
T 3qhx_A 140 ---DLDAVRAAIR----PTTRLIWVETPTNPLLSIADIAGIAQLGAD--SSAKVLVDNTFASPAL-QQPLSLGADVVLHS 209 (392)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTCTTT-CCGGGGTCSEEEEE
T ss_pred ---CHHHHHHhhC----CCCeEEEEECCCCCCcEEecHHHHHHHHHH--cCCEEEEECCCccccc-CChHHhCCcEEEEc
Confidence 8999999998 477999999999999999999999999999 9999999999976532 23334579999999
Q ss_pred CCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++++.+ +|+++.+ +++.+.+.... ...+ ..++......+...++. +....
T Consensus 210 ~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~--------------~~~g----~~~~~~~~~~~~~~l~~-----l~~~~ 266 (392)
T 3qhx_A 210 TTKYIGGHSDVVGGALVTNDEELDQSFAFLQ--------------NGAG----AVPGPFDAYLTMRGLKT-----LVLRM 266 (392)
T ss_dssp TTTTTTCSSCCCCEEEEESCHHHHHHHHHHH--------------HHHC----CCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred CccccCCCCCceEEEEEECcHHHHHHHHHHH--------------HhcC----CCCCHHHHHHHHhhhhH-----HHHHH
Confidence 9999975432 6999887 57766654310 0011 12343322222222222 45566
Q ss_pred HHHHHHHHHHHHHHHHc-CCccc-cCC-Cc-----------cCCCceEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCC-
Q 017726 276 ERHRRLGKATRLAVEAW-GLKNC-TQK-EE-----------WFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLN- 339 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~~~~-~~~-~~-----------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~v~~g~~- 339 (367)
++..++++.+.+.|++. ++..+ .+. +. ...+.+++|.++.+ ...+.+.+.|. ..++.+..|..
T Consensus 267 ~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~-~~~~~~s~G~~~ 345 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTN-IFILAESLGSVE 345 (392)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCS-SSEECSCCCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCC-CceECCCCCCCC
Confidence 77888888999999886 43222 121 00 11255788988532 33456666663 44666655432
Q ss_pred -----C--------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 -----K--------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 -----~--------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.||+|+ +..+.+|+...+.
T Consensus 346 sl~~~~~~~~~~~~~~~~~g~~~~~iRlSv-g~e~~~~~i~~l~ 388 (392)
T 3qhx_A 346 SLIEHPSAMTHASTAGSQLEVPDDLVRLSV-GIEDVADLLDDLK 388 (392)
T ss_dssp CEEECGGGTSCGGGBTTBCCCCTTEEEEEC-CSSCHHHHHHHHH
T ss_pred ceeeCcccccccccCHHHcCCCCCeEEEEe-ccCCHHHHHHHHH
Confidence 1 2346799994 6666666655543
No 184
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.95 E-value=1.8e-25 Score=207.65 Aligned_cols=315 Identities=13% Similarity=0.070 Sum_probs=207.8
Q ss_pred ChHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---C----CCCeEE
Q 017726 20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---S----PGDRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---~----~gd~vl 88 (367)
.++++.+++.+.... + ..........++++.++++++.+. +++++++||++|+..++.++. . ||++|+
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi 138 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFL 138 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC-CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred CCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEE
Confidence 467778877764321 1 111122456788999999998755 459999999999999887542 2 689999
Q ss_pred EEeCCcchHHHHHHHHHhC-------------CceEEEeCCC-----C-CCCCHHHHHHHHhccCCCCccEEEEEec-CC
Q 017726 89 SFLIGQFSLLWIDQQQRLN-------------FNVDVVESDW-----G-EGAKLDVLASKLAADTAHTIKAICIVHN-ET 148 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~-----~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~-~n 148 (367)
+.++.|++.... .....+ ..+..++.+. . +.+|++++++++++.. +++++|+++++ +|
T Consensus 139 ~~~~~yh~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~vi~~p~~~n 216 (429)
T 1s0a_A 139 TFRNGYHGDTFG-AMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR-HEIAAVIIEPIVQG 216 (429)
T ss_dssp EETTCCCCSSHH-HHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT-TTEEEEEECSSEEC
T ss_pred EECCCCCCCchh-hhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC-CCEEEEEEeecccC
Confidence 999988765321 111111 1345565542 2 2579999999997532 35667766665 79
Q ss_pred Ccccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCC-CcceeeeeCHHH
Q 017726 149 ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKA 218 (367)
Q Consensus 149 ~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~ 218 (367)
|||.+.+ +++|.++|++ +|+++|+|++|+ ++.. .++......|+++ ++|+++++ .++|++++++++
T Consensus 217 ~tG~~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t--~sK~l~~G~~~iG~~~~~~~~ 292 (429)
T 1s0a_A 217 AGGMRMYHPEWLKRIRKICDR--EGILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGTMTLSATLTTREV 292 (429)
T ss_dssp TTTCEEBCTHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSCCEEEEECHHH
T ss_pred CCCcccCCHHHHHHHHHHHHH--cCCEEEEeehhhCCcccchHHHhhhcCCCCCEEE--ecccccCCCccceEEEeCHHH
Confidence 9998777 9999999999 999999999997 3211 1222233467775 46999876 678999999998
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC 297 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 297 (367)
++.+....... +..+ ..++.+...+++..++++.+.+. ...++..++++++.+.|+++ +++.+
T Consensus 293 ~~~l~~~~~~~-----------~~~~--~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~ 356 (429)
T 1s0a_A 293 AETISNGEAGC-----------FMHG--PTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMV 356 (429)
T ss_dssp HHHHHTSTTSS-----------CSCC--CTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTE
T ss_pred HHHhhcCCCcc-----------cccC--CCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 88776421000 0001 13456777777888888877654 45667888899999999875 22211
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
.... ..+.++++.+++..+..++.+.|.+ +||.+.+. ++++||++....+++ +...+.|+
T Consensus 357 ~~~~--~~g~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~-----~~~iRis~~~~~t~e~i~~~~~~l~ 418 (429)
T 1s0a_A 357 ADVR--VLGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-----GKLIYLMPPYIILPQQLQRLTAAVN 418 (429)
T ss_dssp EEEE--EETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEE--EeeEEEEEEECCcccHHHHHHHHHH-CCCEEecc-----CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 1000 1234677888655677889999975 59999863 368999965444444 33344443
No 185
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=2.2e-26 Score=216.11 Aligned_cols=296 Identities=13% Similarity=0.090 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC----CCCe---EEEEeCCcchHHHHHHHHHhCCceEEEe
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----PGDR---IISFLIGQFSLLWIDQQQRLNFNVDVVE 114 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~----~gd~---vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 114 (367)
....++++.++++++.+ ++++|+||++|+..++.+++. +||. |+++ ..|+.. +.......|.+++.++
T Consensus 76 ~~~~~l~~~la~~~~~~---~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~-~~~~~~-~~~~~~~~g~~~~~~~ 150 (467)
T 1ax4_A 76 RNYYDLKDKAKELFNYD---YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDT-TAAHVELNGCKAINIV 150 (467)
T ss_dssp HHHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHH-HHHHHHHTTCEEEECB
T ss_pred ccHHHHHHHHHHHcCCC---cEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe-ccccch-hhHHHhccCCceeccc
Confidence 56779999999999863 599999999999999998887 9998 8888 545554 2344566788887765
Q ss_pred CC----------CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-ccccc---HHHHHHHHHhcCCCcEEEEeeeecc
Q 017726 115 SD----------WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSKVRKLLDEYRHPALFLVDGVSSI 180 (367)
Q Consensus 115 ~~----------~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~ 180 (367)
.. .++.+|+++|++++++...+++++|++++++||+ |.+++ +++|.++|++ ||+++|+|+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~--~gi~li~De~~~~ 228 (467)
T 1ax4_A 151 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ--HGIFVVMDSARFC 228 (467)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH--HTCCEEEECTTHH
T ss_pred ccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHH--cCCEEEEEchhhh
Confidence 42 1346899999999985311257999999999999 78765 6789999999 9999999998654
Q ss_pred -----------Cceeecccc------ccceEEEecCCCcccCCCcceeeeeC-H-HHHHHhccCCCCceeechHHHHHHh
Q 017726 181 -----------CAIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCAS-P-KALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 181 -----------~~~~~~~~~------~~~d~~~~s~~K~~~g~~g~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+....+... ..+|++++|+||+++.+.| |+++.+ + ++++++.... ..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~------------~~~ 295 (467)
T 1ax4_A 229 ENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRC------------VPM 295 (467)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHH------------HHH
T ss_pred hcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhc------------ccc
Confidence 111122111 2368899999999864435 777777 6 7776654210 001
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE-------cC
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI-------VP 314 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~ 314 (367)
.+.......+...+.++..++....+ ++..++..++++++.+.|++.|+++..+ ..+..+++. ++
T Consensus 296 -~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 367 (467)
T 1ax4_A 296 -EGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQYP----TGGHAVFVDCKKLVPQIP 367 (467)
T ss_dssp -TCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSS----CCSSEEEEESTTTCTTSC
T ss_pred -ccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhCCCCcccC----CCceEEEEehhhhccccc
Confidence 11111223444333444434443221 1233444577889999998877777654 345567777 32
Q ss_pred C-CCCHHHHHHHHHhhCCeEEcc-CCC---C---------CCCcEEEEeecCC-CCH--HHHHHhhhh
Q 017726 315 S-HINSSEIVRRAWQRYNLSLGL-GLN---K---------VAGKVFRIGHLGH-LNE--VMFNFQLLF 365 (367)
Q Consensus 315 ~-~~~~~~l~~~L~~~~gv~v~~-g~~---~---------~~~~~iRi~~~~~-~~~--~~~~~~~l~ 365 (367)
. +.+..+++++|.+++||.+.+ |.. . ...+++|+++... .+. .+...+.|.
T Consensus 368 ~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~ 435 (467)
T 1ax4_A 368 GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALI 435 (467)
T ss_dssp GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHH
Confidence 1 234678999984455999987 421 1 0126899997633 443 344444444
No 186
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.94 E-value=5.7e-25 Score=202.07 Aligned_cols=251 Identities=14% Similarity=0.136 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.+++++|.+ +.+++ ++|++|+..++. ++.+||+|+++.+.|.+.. +...++..|++++.++.+
T Consensus 67 p~~~~l~~~la~~~g~~--~~i~~-~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 139 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK--YCLAF-ASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS--- 139 (403)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEE-SCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred chHHHHHHHHHHHhCCC--cEEEE-CCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC---
Confidence 55789999999999986 34555 566899999998 8899999999999888753 334456789999999875
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC-cEEEEeeeeccCceeeccccccceEEEec
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP-ALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~-~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||||.+.|+++|.++|++ +| +++++|++|+.+....+.. .++|+++.|
T Consensus 140 --d~~~l~~~i~----~~t~~v~~~~p~nptG~~~~l~~i~~la~~--~g~~~livD~~~~~~~~~~~~~-~~~div~~S 210 (403)
T 3cog_A 140 --KIKLLEAAIT----PETKLVWIETPTNPTQKVIDIEGCAHIVHK--HGDIILVVDNTFMSPYFQRPLA-LGADISMYS 210 (403)
T ss_dssp --SHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTS--SSCCEEEEECTTTCTTTCCTTT-TTCSEEEEE
T ss_pred --CHHHHHHhcC----cCCeEEEEECCCCCCCeeeCHHHHHHHHHH--cCCCEEEEECCCcccccCCccc-cCCeEEEEc
Confidence 7999999987 477999999999999999999999999999 99 9999999998765322332 579999999
Q ss_pred CCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++|+.+ +|+++++ +++++++..... ..+ .+.+.....+...+++. +..+.
T Consensus 211 ~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~--------------~~g----~~~~~~~~~~~~~~l~~-----l~~r~ 267 (403)
T 3cog_A 211 ATKYMNGHSDVVMGLVSVNCESLHNRLRFLQN--------------SLG----AVPSPIDCYLCNRGLKT-----LHVRM 267 (403)
T ss_dssp TTTTTTCSSCCCCEEEEECCHHHHHHHHHHHH--------------HHC----CCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred ChhhccCCCCCeEEEEEECcHHHHHHHHHHHH--------------hcC----CCCCHHHHHHHHhhhhH-----HHHHH
Confidence 9999987765 4999985 777776653210 011 12444333333334433 34445
Q ss_pred HHHHHHHHHHHHHHHHc---------------CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 017726 276 ERHRRLGKATRLAVEAW---------------GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 335 (367)
++..+++..+.+.|++. ++.+..++.. ..+.++.|.++ + ..+++.+.| ++.+|.++
T Consensus 268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~-~~g~~~~~~l~-~-~~~~~~~~l-~~~~i~~~ 338 (403)
T 3cog_A 268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT-GCTGMVTFYIK-G-TLQHAEIFL-KNLKLFTL 338 (403)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS-CCCSEEEEEES-S-CHHHHHHHH-HHCSSSEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC-CCceEEEEEec-C-CHHHHHHHH-HhCCcceE
Confidence 56666777777777654 2222221111 12457777774 2 234455555 45687553
No 187
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.94 E-value=6.9e-26 Score=208.26 Aligned_cols=292 Identities=15% Similarity=0.101 Sum_probs=201.7
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC------C-CCeEE
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS------P-GDRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~------~-gd~vl 88 (367)
.++.+.+++.+.... ...+ ......++++.+++++|. +++++++||++|+..++.++.. + ++.|+
T Consensus 57 ~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~---~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi 132 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNTFG---GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRIL 132 (397)
T ss_dssp TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEE
Confidence 356677777664321 1112 236678999999999983 3599999999999999887642 4 47899
Q ss_pred EEeCCcchHHHHHHHHHhCCc------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc-cc-
Q 017726 89 SFLIGQFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV-TN- 154 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~-~~- 154 (367)
+.++.|++... ..++..|.+ +..++.+ |+++++++++ +++++|++++++||||. ++
T Consensus 133 ~~~~~yh~~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~ 202 (397)
T 2ord_A 133 SAHNSFHGRTL-GSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMS----EDVCAVFLEPIQGESGIVPAT 202 (397)
T ss_dssp EEBTCCCCSSH-HHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCC----TTEEEEEECSEECTTTCEECC
T ss_pred EEcCCcCCCch-hhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhh----cCeEEEEEecccCCCCcccCC
Confidence 99887766432 234445654 6666653 8999999987 47899999999999998 44
Q ss_pred --cHHHHHHHHHhcCCCcEEEEeeeeccCce---eecccc--ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 155 --NLSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 155 --~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~~~~~~--~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
++++|.++|++ +|+++|+|++|+.... .+.... ...|++ +++|+++++.++|+++++++++ .+....
T Consensus 203 ~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~- 276 (397)
T 2ord_A 203 KEFLEEARKLCDE--YDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGD- 276 (397)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCTTS-
T ss_pred HHHHHHHHHHHHH--cCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCCCC-
Confidence 58889999999 9999999999973221 122121 236776 4479998655689999998865 443210
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFS 305 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~ 305 (367)
.+. .++.+...+.++.++++.+.+ ++..++++++++++.+.|+++ +++...... ..
T Consensus 277 ---------------~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~ 334 (397)
T 2ord_A 277 ---------------HGT--TFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVR--GM 334 (397)
T ss_dssp ---------------SCC--SSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EE
T ss_pred ---------------cCC--CCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEE--EE
Confidence 011 334666666777777776554 356778889999999999886 454322111 12
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
+.++++.+++..+..++.+.|.+ +||.+.++. ++++|+++....++++
T Consensus 335 g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~----~~~iRis~~~~~~~e~ 382 (397)
T 2ord_A 335 GLMIGIQFREEVSNREVATKCFE-NKLLVVPAG----NNTIRFLPPLTVEYGE 382 (397)
T ss_dssp TTEEEEEECTTSCHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHH
T ss_pred eEEEEEEECChHHHHHHHHHHHH-CCCEEccCC----CCEEEEECCcCCCHHH
Confidence 35677888655568899999976 599998762 4689999654444443
No 188
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.94 E-value=2.8e-26 Score=218.07 Aligned_cols=281 Identities=14% Similarity=0.060 Sum_probs=175.5
Q ss_pred CceEEecCChhHHHHHHHHc-----cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhc
Q 017726 60 GTPFLIPTTGTGAWESALTN-----TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAA 132 (367)
Q Consensus 60 ~~~v~~~~ggt~al~~~~~~-----~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~ 132 (367)
+++|++|+|+++++..++.+ ++.+||.|++++|.|+++.........|.+++.++.+++ +.+|++++++++.
T Consensus 165 ~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~- 243 (546)
T 2zy4_A 165 SVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD- 243 (546)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-
Confidence 46799999999999998876 578999999999988775421112334788888887643 4689999988765
Q ss_pred cCCCCccEEEEEecCCCcccccc---HHHHHHHH--HhcCCCcEEEEeeeeccCcee-eccc--cccceEEEecCCCccc
Q 017726 133 DTAHTIKAICIVHNETATGVTNN---LSKVRKLL--DEYRHPALFLVDGVSSICAID-FRMD--EWGIDVALTGSQKALS 204 (367)
Q Consensus 133 ~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~--~~~~~~~~vi~D~~~~~~~~~-~~~~--~~~~d~~~~s~~K~~~ 204 (367)
+++++|++++|+||||.+++ +++|.++| ++ +|++||+|++|+..... .++. ..+.++++.|+||+++
T Consensus 244 ---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~--~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g 318 (546)
T 2zy4_A 244 ---PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHR--PDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFG 318 (546)
T ss_dssp ---TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTC--TTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTT
T ss_pred ---CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhcc--CCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccC
Confidence 57899999999999999997 45577777 55 89999999999854321 1111 1246899999999984
Q ss_pred CCCc--ceeeeeCHH-HHHHhccCCC----------------CceeechHHHH-HHhh-cCCccCCCCcHHHHHHH-HHH
Q 017726 205 LPTG--MGIVCASPK-ALEASKTAKS----------------VRVFFDWKDYI-KFYN-LGTFWPYTPSIQLLYGL-RAA 262 (367)
Q Consensus 205 g~~g--~g~~~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~al-~~a 262 (367)
.+| +|+++++++ +++++..... ..+...+.+.. .... ...+...+.+.....++ ..+
T Consensus 319 -~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a 397 (546)
T 2zy4_A 319 -ATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFS 397 (546)
T ss_dssp -CGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHH
T ss_pred -CCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHH
Confidence 555 699998875 7666532110 00001000000 0000 00000112333222221 112
Q ss_pred H-HHHHHhC--hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC----------------CCCHHHHH
Q 017726 263 L-DLIFEEG--LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS----------------HINSSEIV 323 (367)
Q Consensus 263 l-~~~~~~g--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~ 323 (367)
+ .++.+.. .+++++.++++++.+.+.|. .++.+..+ .++++++++++. +.+..+++
T Consensus 398 ~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l 472 (546)
T 2zy4_A 398 LFALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDEN----AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDML 472 (546)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTT----BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCC----CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHH
Confidence 2 2222211 56677777888888877774 44433333 466677888631 12334444
Q ss_pred HHHHhhCCeEEccCCCCC-CCcEEEEeecC
Q 017726 324 RRAWQRYNLSLGLGLNKV-AGKVFRIGHLG 352 (367)
Q Consensus 324 ~~L~~~~gv~v~~g~~~~-~~~~iRi~~~~ 352 (367)
..+.+++||.+.||..+. .++++||++..
T Consensus 473 ~~ll~~~gV~v~pG~~F~~~~~~iRis~~~ 502 (546)
T 2zy4_A 473 FRIADETGIVLLPGRGFGSNRPSGRASLAN 502 (546)
T ss_dssp HHHHHHHSCCCEESSCTTCSSCEEEEESSS
T ss_pred HHHHHHCCEEEeCccccCCCCCeEEEEecc
Confidence 444456699999986543 34679999754
No 189
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.94 E-value=5.3e-25 Score=202.94 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=199.6
Q ss_pred hHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-------CC-CeEEE
Q 017726 21 PDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRIIS 89 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-------~g-d~vl~ 89 (367)
++.+.+++.+.... +. .........+++++++++++.+ ++++++||++|+..++.++.. +| |.|++
T Consensus 57 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~ 133 (406)
T 4adb_A 57 HPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFAD---RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVA 133 (406)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCS---EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEE
T ss_pred CHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCC---eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 56667766654322 11 1112356789999999999754 599999999999999987653 55 89999
Q ss_pred EeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---
Q 017726 90 FLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN--- 154 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~--- 154 (367)
.++.|++... ......+ .++..++. .|+++++++++ +++++|+++ |+||+|.++
T Consensus 134 ~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~----~~~~~v~~~-p~np~g~~~~~~ 202 (406)
T 4adb_A 134 FKNAFHGRTL-FTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALID----DSTCAVIVE-PIQGEGGVVPAS 202 (406)
T ss_dssp ETTCCCCSSH-HHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCS----TTEEEEEEC-SEETTTTSEECC
T ss_pred ECCCcCCCcH-HHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhc----CCeEEEEEe-CCcCCCCCccCC
Confidence 9998887642 1222222 23444443 37999999887 477999988 899999765
Q ss_pred --cHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 155 --NLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 155 --~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
++++|.++|++ +|+++|+|++|+.... ..+......|++++ +|+++++.++|++++++++++.+.....
T Consensus 203 ~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~~~~~~~~~~~~~ 278 (406)
T 4adb_A 203 NAFLQGLRELCNR--HNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGALLATEECARVMTVGTH 278 (406)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHHHHHTCCTTSS
T ss_pred HHHHHHHHHHHHH--cCCEEEEeccccCCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEEEcHHHHhhhccCCc
Confidence 58899999999 9999999999963211 11222234677754 9999754458999999999887764321
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFS 305 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~ 305 (367)
+. .++.+...+.+..++++.+.+ ++..++++++++++.+.|++++ +....... ..
T Consensus 279 ----------------~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~ 335 (406)
T 4adb_A 279 ----------------GT--TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR--GL 335 (406)
T ss_dssp ----------------CC--SSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE--EE
T ss_pred ----------------CC--CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE--EE
Confidence 11 335666666666666665533 5678888999999999998863 22211111 13
Q ss_pred CceEEEEcCCCC--CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 306 DTVTAVIVPSHI--NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 306 ~~~~~~~~~~~~--~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
+.++++.+++.. +..++++.|.++ ||.+.++. ++++|+++....++++
T Consensus 336 g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~----~~~iRi~~~~~~~~e~ 385 (406)
T 4adb_A 336 GLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG----GNVVRFAPALNVSEEE 385 (406)
T ss_dssp TTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHH
T ss_pred EEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC----CCeEEEECCCCCCHHH
Confidence 457778876533 678999999766 99998753 5689997555555443
No 190
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.94 E-value=4.9e-25 Score=204.48 Aligned_cols=307 Identities=17% Similarity=0.113 Sum_probs=204.3
Q ss_pred ChHHHHHHHccCCCCC----CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH---ccCCCCCeEEEEeC
Q 017726 20 IPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT---NTLSPGDRIISFLI 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~---~~~~~gd~vl~~~~ 92 (367)
.++.+.+++.+..... ..+.......++++.|+++++.+.++++++++||++|+..++. ++..+| .|++.+|
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p 136 (426)
T 1sff_A 58 LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSG 136 (426)
T ss_dssp TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETT
T ss_pred CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECC
Confidence 4677888887754321 1234457788999999999932333579999999999999987 566666 8999999
Q ss_pred CcchHHHHHHHHHhCCc-------------eEEEeCCCC-----CCCCHHHHHHHHhcc-CCCCccEEEEEe-cCCCccc
Q 017726 93 GQFSLLWIDQQQRLNFN-------------VDVVESDWG-----EGAKLDVLASKLAAD-TAHTIKAICIVH-NETATGV 152 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~-------------~~~v~~~~~-----~~~d~e~l~~~i~~~-~~~~~~lv~~~~-~~n~tG~ 152 (367)
.|++... ......|.+ +..++.+.+ +.+|++++++++++. ..+++++|++++ ++| ||.
T Consensus 137 ~y~~~~~-~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~ 214 (426)
T 1sff_A 137 AYHGRTH-YTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGF 214 (426)
T ss_dssp CCCCSSH-HHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTS
T ss_pred CcCCCch-HhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCc
Confidence 8876532 223334432 667776531 236899999998741 002567777743 456 997
Q ss_pred ccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 153 TNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 153 ~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
+.+ +++|.++|++ +|+++|+|++|+.... .++.....+|++ |++|+++++..+|++++++++++.+.
T Consensus 215 ~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~GlriG~~~~~~~~~~~l~ 290 (426)
T 1sff_A 215 YASSPAFMQRLRALCDE--HGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFPLAGVTGRAEVMDAVA 290 (426)
T ss_dssp CBCCHHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSCCEEEEEEHHHHTTSC
T ss_pred ccCCHHHHHHHHHHHHH--cCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccCCCceEEEEEcHHHHhhhc
Confidence 776 9999999999 9999999999983221 122222236665 66799964233699999998877665
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--CccccCCC
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKE 301 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~ 301 (367)
.... + ..++.+...+.++.++++.+.+. ...++..++++++++.|++++ ++......
T Consensus 291 ~~~~----------------~--~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 349 (426)
T 1sff_A 291 PGGL----------------G--GTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDVR 349 (426)
T ss_dssp TTSB----------------C--CSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred cCCc----------------C--cCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3110 1 13346676777788888887664 345677888889999888752 43222111
Q ss_pred ccCCCceEEEEcC--------CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 302 EWFSDTVTAVIVP--------SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 302 ~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+ . +.++++.++ ++.+..++.+.|.++ ||.+.+|... ++++|+++....+++++
T Consensus 350 ~-~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~--~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 350 G-L-GAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQI 410 (426)
T ss_dssp E-E-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHH
T ss_pred E-E-EEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCCC--CCEEEEECCccCCHHHH
Confidence 1 2 457778873 123456788999765 9999987542 56899997545554443
No 191
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=6.8e-25 Score=200.94 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
...+++|+.+++++|.+ + .++++||++|+..++. ++.+||+|+++.+.|++.. +...++..|++++.++.+
T Consensus 55 ~~~~~lr~~la~~~g~~--~-~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 127 (393)
T 1n8p_A 55 PNRENLERAVAALENAQ--Y-GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL--- 127 (393)
T ss_dssp HHHHHHHHHHHHHTTCS--E-EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH---
T ss_pred hhHHHHHHHHHHHhCCC--c-EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC---
Confidence 56789999999999986 3 4555677999999999 8899999999999877543 223456679999999875
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC----CcEEEEeeeeccCceeeccccccceEE
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH----PALFLVDGVSSICAIDFRMDEWGIDVA 195 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~----~~~vi~D~~~~~~~~~~~~~~~~~d~~ 195 (367)
| ++++++++ +++++|++++++||+|.+.|+++|.++|++ + |+++++|++|+.+... +....++|++
T Consensus 128 --d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~l~~i~~la~~--~~~~~~~~livD~a~~~~~~~-~~~~~~~di~ 197 (393)
T 1n8p_A 128 --L-NDLPQLIK----ENTKLVWIETPTNPTLKVTDIQKVADLIKK--HAAGQDVILVVDNTFLSPYIS-NPLNFGADIV 197 (393)
T ss_dssp --H-HHHHHHSC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHH--HTTTTTCEEEEECTTTHHHHC-CGGGGTCSEE
T ss_pred --h-HHHHHhcc----cCceEEEEECCCCCcceecCHHHHHHHHHH--hCCCCCCEEEEeCCccccccC-CHHHcCCeEE
Confidence 7 88998887 467999999999999999999999999999 8 9999999999876543 4444579999
Q ss_pred EecCCCcccCCCc--c-eeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh
Q 017726 196 LTGSQKALSLPTG--M-GIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL 271 (367)
Q Consensus 196 ~~s~~K~~~g~~g--~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~ 271 (367)
++|+||+++ ++| + |+++++ +++++++.... ...|. +++.....++..+++. +
T Consensus 198 ~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~~--------------~~~g~----~~~~~~~~~~~~~l~~-----~ 253 (393)
T 1n8p_A 198 VHSATKYIN-GHSDVVLGVLATNNKPLYERLQFLQ--------------NAIGA----IPSPFDAWLTHRGLKT-----L 253 (393)
T ss_dssp EEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHH--------------HHHCC----CCCHHHHHHHHHHHTT-----H
T ss_pred EEECccccc-CCCCceeEEEEeCCHHHHHHHHHHH--------------HhcCC----CCCHHHHHHHHhccch-----H
Confidence 999999985 655 5 888885 77777765320 01121 2333222222223322 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 017726 272 ENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 272 ~~~~~~~~~~~~~l~~~L~~~ 292 (367)
....++..+++..+.+.|++.
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~~ 274 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 455666777888888888775
No 192
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.94 E-value=6.5e-25 Score=213.30 Aligned_cols=296 Identities=8% Similarity=0.019 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC---
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--- 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--- 118 (367)
....++++.+++++|.+. .+++++|+++++..++.+++.+||.|++..+.|.+... ..++..|++++.++...+
T Consensus 173 ~~i~e~e~~lA~~~gae~--~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~-~~~~l~Ga~~v~v~~~~~~~~ 249 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK--TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN-SALAMAGGRPVYLQTNRNPYG 249 (730)
T ss_dssp THHHHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH-HHTTTTCCEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH-HHHHHCCCEEEEEeCCccccC
Confidence 457899999999999875 47777777899999999999999999999999887642 225678999888876432
Q ss_pred --CCCCHHHH-----HHHHhccC-----CCCc-cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce--
Q 017726 119 --EGAKLDVL-----ASKLAADT-----AHTI-KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-- 183 (367)
Q Consensus 119 --~~~d~e~l-----~~~i~~~~-----~~~~-~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-- 183 (367)
+.+|++++ +++++++. +.++ |++++++| |++|.+.|+++|.++|++ +|+++++|++|+.+..
T Consensus 250 i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~--~g~~livDeAh~~~~~f~ 326 (730)
T 1c4k_A 250 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGH--LCDYIEFDSAWVGYEQFI 326 (730)
T ss_dssp CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGG--GBSEEEEECTTCCGGGSS
T ss_pred ccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHH--cCCeEEEEcccccccccC
Confidence 33688888 88887541 0123 89999998 689999999999999999 9999999999864211
Q ss_pred -------eeccccccce----EEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHH---HHHhhcCCccCC
Q 017726 184 -------DFRMDEWGID----VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY---IKFYNLGTFWPY 249 (367)
Q Consensus 184 -------~~~~~~~~~d----~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 249 (367)
+++....++| +++.|+||+++|+.+.|+++++++.+.. .....+.... ...+. ..
T Consensus 327 ~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g------~~~~i~~~~~~~~~~~~~-----st 395 (730)
T 1c4k_A 327 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG------QLRYCDHKHFNNSFNLFM-----ST 395 (730)
T ss_dssp GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT------STTCCCHHHHHHHHHHHS-----CS
T ss_pred cccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcC------cccccCHHHHHHHHHHhC-----CC
Confidence 1122123667 9999999999888877888777664311 0111221111 11222 23
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCC--------------------------
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKE-------------------------- 301 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-------------------------- 301 (367)
+++...++++.++++.+..++.++..++..++++++++.|++ . |+++..+..
T Consensus 396 sp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (730)
T 1c4k_A 396 SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKG 475 (730)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTT
T ss_pred CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCcc
Confidence 588888899999998887633356678899999999999999 4 888765421
Q ss_pred ------ccC-C------CceEEEEcCC-----------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH
Q 017726 302 ------EWF-S------DTVTAVIVPS-----------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 302 ------~~~-~------~~~~~~~~~~-----------~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~ 357 (367)
... . ...+.+..|. +.++.++.++|.++ ||.+... ....+|+.+...++.+
T Consensus 476 ~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~-GI~v~~~----~~~~ir~~~s~g~t~e 550 (730)
T 1c4k_A 476 AKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDH-GIIPEKS----DLNSILFLMTPAETPA 550 (730)
T ss_dssp CTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHT-TCCCSEE----CSSEEEEECCTTCCHH
T ss_pred chhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHC-CcEEEEC----CCCeEEEEeCCCCCHH
Confidence 000 1 1114566531 46788999999766 9877532 2456888877777655
Q ss_pred HH
Q 017726 358 MF 359 (367)
Q Consensus 358 ~~ 359 (367)
++
T Consensus 551 ~i 552 (730)
T 1c4k_A 551 KM 552 (730)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 193
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.93 E-value=3.2e-24 Score=210.30 Aligned_cols=295 Identities=9% Similarity=-0.001 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC---
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--- 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--- 118 (367)
....++++.+++++|.+. .+++++|+++++..++.+++.+||.|++..+.|.+... .+...|++++.++.+.+
T Consensus 205 g~v~~~ee~la~l~G~d~--~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--~~~~~G~~~v~v~~~~~~~g 280 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR--SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--GLMLTGAKPVYMVPSRNRYG 280 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--HHHHHCCEEEEECCCBCTTS
T ss_pred cHHHHHHHHHHHHhCCCc--eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--HHHHcCCEEEEEeCCCCccc
Confidence 557789999999999864 47788887899999999999999999999999988653 35678999999987542
Q ss_pred --CCC-----CHHHHHHHHhccCC------CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee
Q 017726 119 --EGA-----KLDVLASKLAADTA------HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF 185 (367)
Q Consensus 119 --~~~-----d~e~l~~~i~~~~~------~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~ 185 (367)
+.+ |++++++++++++. .+++++++++| |++|.+.|+++|.++|++ +|+++++|++|+......
T Consensus 281 ~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~--~~~~livDeA~~~~~~~~ 357 (755)
T 2vyc_A 281 IIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEK--TSDRLHFDEAWYGYARFN 357 (755)
T ss_dssp CBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTT--TCSEEEEECTTCTTGGGC
T ss_pred cccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHH--cCCEEEEECcCchhcccC
Confidence 235 99999999986420 13459999997 799999999999999999 999999999997432111
Q ss_pred c----ccc-cc--ceE------EEecCCCcccCCCcceeeeeCHH--HH--HHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 186 R----MDE-WG--IDV------ALTGSQKALSLPTGMGIVCASPK--AL--EASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 186 ~----~~~-~~--~d~------~~~s~~K~~~g~~g~g~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
+ ... .+ +|+ ++.|+||+++|+.+.|+++++++ .+ .++ ......++ .
T Consensus 358 ~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~------------~~~~~~~~-----s 420 (755)
T 2vyc_A 358 PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRF------------NQAYMMHA-----T 420 (755)
T ss_dssp GGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHH------------HHHHHHTS-----C
T ss_pred cccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHH------------HHHHHHhC-----C
Confidence 1 111 24 565 99999999988887788888655 11 111 11111222 3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C---------CccccCCCc----------------
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G---------LKNCTQKEE---------------- 302 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g---------~~~~~~~~~---------------- 302 (367)
.+++...++++.+|++.+...|.+++.++..++++++++.|+++ | ++++.+...
T Consensus 421 ~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (755)
T 2vyc_A 421 TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPT 500 (755)
T ss_dssp SSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccc
Confidence 36889999999999998877755678889999999999999887 6 655554210
Q ss_pred -----------------------------cCCCceEEEEcCC----------CCCHHHHHHHHHhhCCeEEccCCCCCCC
Q 017726 303 -----------------------------WFSDTVTAVIVPS----------HINSSEIVRRAWQRYNLSLGLGLNKVAG 343 (367)
Q Consensus 303 -----------------------------~~~~~~~~~~~~~----------~~~~~~l~~~L~~~~gv~v~~g~~~~~~ 343 (367)
......+.+.++. ++++.++.+.|.+ +||.+... ..
T Consensus 501 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~-~gI~~e~~----~~ 575 (755)
T 2vyc_A 501 KLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGR-HGIVPTRT----TD 575 (755)
T ss_dssp HHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHT-TTCCCSEE----CS
T ss_pred hhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHH-CCCEEeec----CC
Confidence 0022456677752 4666899999965 79876431 24
Q ss_pred cEEEEeecCCCCH--HHHHHhhhh
Q 017726 344 KVFRIGHLGHLNE--VMFNFQLLF 365 (367)
Q Consensus 344 ~~iRi~~~~~~~~--~~~~~~~l~ 365 (367)
..+|+.+...++. .+....+|.
T Consensus 576 ~~v~~~~~~g~t~~~~~~l~~al~ 599 (755)
T 2vyc_A 576 FQIMFLFSMGVTRGKWGTLVNTLC 599 (755)
T ss_dssp SEEEEECCTTCCTTTTHHHHHHHH
T ss_pred CeEEEEECCCCCHHHHHHHHHHHH
Confidence 5688876665544 344444443
No 194
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.93 E-value=7.2e-25 Score=202.22 Aligned_cols=284 Identities=16% Similarity=0.119 Sum_probs=194.9
Q ss_pred HHHHHHHccCCCC------CCCCc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe-CC
Q 017726 22 DQVIRAMNRNNED------YRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL-IG 93 (367)
Q Consensus 22 ~~v~~a~~~~~~~------~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~-~~ 93 (367)
.++++++.+.... ..++. .....+++++.+++++|.+....-++++||++|+..++.+++.+||+|++.. +.
T Consensus 38 ~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~ 117 (431)
T 3ht4_A 38 FRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKP 117 (431)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSC
T ss_pred HHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 4677777664221 11122 1244788999999999987532112245889999999999999999999998 76
Q ss_pred cchHH-HH-------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe-cCCCcccc---ccHHHHHH
Q 017726 94 QFSLL-WI-------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH-NETATGVT---NNLSKVRK 161 (367)
Q Consensus 94 ~~~~~-~~-------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~-~~n~tG~~---~~~~~i~~ 161 (367)
|.+.. .. ..++..|++++.++.++++.+|+++++++++ +++++|++++ ++||+|.. .++++|.+
T Consensus 118 y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~----~~tk~V~i~~sp~np~~~~~~~~~l~~i~~ 193 (431)
T 3ht4_A 118 YDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH----SNTKMIGIQRSKGYATRPSFTISQIKEMIA 193 (431)
T ss_dssp CTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC----TTEEEEEEECSCTTSSSCCCCHHHHHHHHH
T ss_pred chhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC----CCCeEEEEECCCCCCCCCcCCHHHHHHHHH
Confidence 66543 11 2234579999999998888999999999997 4779999995 66666654 46888888
Q ss_pred HHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccC---CCcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL---PTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g---~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+|++.++|+++++|++|+.+.........++|++++|++|+++| +.| |++++++++++++........
T Consensus 194 la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~-------- 264 (431)
T 3ht4_A 194 FVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPG-------- 264 (431)
T ss_dssp HHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTT--------
T ss_pred HHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCC--------
Confidence 88875579999999999887654444456789999999999876 566 999999999888764211000
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
.+. ...++......+...+.. +..+.++..+++.++.+.|+++|+++.+.....+...++.+.+++...
T Consensus 265 ----~g~--~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~ 333 (431)
T 3ht4_A 265 ----IGA--EAGASLYSLQEMYQGFFL-----APHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDR 333 (431)
T ss_dssp ----TTT--SCSCCCSCSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHH
T ss_pred ----ccc--ccCccHHHHHHHHhHhhh-----HHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHH
Confidence 010 001111101122223333 355677889999999999999988774432222444577788853334
Q ss_pred HHHHHHHHHhh
Q 017726 319 SSEIVRRAWQR 329 (367)
Q Consensus 319 ~~~l~~~L~~~ 329 (367)
..++++.|.+.
T Consensus 334 ~~~~~~~l~~~ 344 (431)
T 3ht4_A 334 MIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 56788888654
No 195
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.93 E-value=3e-24 Score=199.66 Aligned_cols=296 Identities=19% Similarity=0.147 Sum_probs=204.4
Q ss_pred ChHHHHHHHccCCCC--CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---------CCC-Ce
Q 017726 20 IPDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-DR 86 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---------~~g-d~ 86 (367)
.++++.+++.+.... +.+. ...+...++++.+++++|. +.+++++||++|+..++..+. .+| ++
T Consensus 93 ~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~ 169 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNY---HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAK 169 (439)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCE
T ss_pred CCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCe
Confidence 678888888775432 1111 1234567899999999973 359999999999999887643 356 89
Q ss_pred EEEEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 87 IISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
|++.++.|++... ......| .++..++.+ |+++++++++. +++++|++++.++++|.+.
T Consensus 170 vi~~~~~yhg~~~-~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~---~~~~~vi~ep~~~~~G~~~ 240 (439)
T 2oat_A 170 IVFAAGNFWGRTL-SAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQD---PNVAAFMVEPIQGEAGVVV 240 (439)
T ss_dssp EEEETTCCCCSSH-HHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTS---TTEEEEEECSSBTTTTSBC
T ss_pred EEEEcCCCCCCCH-hHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCC---CCEEEEEEECCCCCCCCcC
Confidence 9999988877532 1222223 456666643 89999999952 4678888777778899876
Q ss_pred ----cHHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhcc
Q 017726 155 ----NLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT 224 (367)
Q Consensus 155 ----~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~ 224 (367)
++++|.++|++ +|+++|+|++|..... . ++......|++ |++|+++++ ..+|++++++++++.+..
T Consensus 241 ~~~~~l~~l~~l~~~--~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~ 316 (439)
T 2oat_A 241 PDPGYLMGVRELCTR--HQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKP 316 (439)
T ss_dssp CCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeEEEEECHHHHhccCC
Confidence 69999999999 9999999999963211 1 12222346876 567999764 347999999998776653
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
... +. .++.+...+++..++++.+.++ +..++..++++++.+.|+++++++..... .
T Consensus 317 ~~~----------------~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--~ 373 (439)
T 2oat_A 317 GEH----------------GS--TYGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLPSDVVTAVR--G 373 (439)
T ss_dssp TSS----------------CC--SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCTTTEEEEE--E
T ss_pred CCc----------------cc--CCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhcCCCcEEEE--e
Confidence 210 11 3346666667777788887664 35667888999999999887655432111 1
Q ss_pred CCceEEEEcCCC--CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 305 SDTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 305 ~~~~~~~~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.++++.+++. .+..++++.|.++ ||.+.++ .++++|+++....+++++
T Consensus 374 ~g~~~~v~l~~~~~~~~~~l~~~l~~~-Gv~v~~~----~~~~iRi~~~~~~t~e~i 425 (439)
T 2oat_A 374 KGLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPT----HGDIIRFAPPLVIKEDEL 425 (439)
T ss_dssp ETTEEEEEECCCSSCCHHHHHHHHHHT-TEECCBS----SSSEEEECCCTTCCHHHH
T ss_pred eeeEEEEEEecCccHHHHHHHHHHHHC-CeEEecC----CCCEEEEECccCCCHHHH
Confidence 345677887544 4578899999765 9999873 256899987555555443
No 196
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.93 E-value=3.4e-24 Score=196.87 Aligned_cols=295 Identities=13% Similarity=0.159 Sum_probs=197.5
Q ss_pred hHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CCCCeEEEE
Q 017726 21 PDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPGDRIISF 90 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~gd~vl~~ 90 (367)
++++.+++.+.... +. .....+...+++++++++++ .+++++++||++|+..++..+. .++++|++.
T Consensus 54 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~ 130 (395)
T 3nx3_A 54 HAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA---LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAF 130 (395)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred CHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC---CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 56777777664332 11 11234678899999999998 2359999999999999887653 457999999
Q ss_pred eCCcchHHHHHHH-----------HHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----
Q 017726 91 LIGQFSLLWIDQQ-----------QRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---- 155 (367)
Q Consensus 91 ~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---- 155 (367)
++.|++....... ...+.++..++.+ |+++++++++ +++++|++++++|++|.+.+
T Consensus 131 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~ 201 (395)
T 3nx3_A 131 KHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVN----EKTCAIILESVQGEGGINPANKDF 201 (395)
T ss_dssp TTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCC----TTEEEEEEESEECTTSCEECCHHH
T ss_pred cCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHH
Confidence 9988775321110 0112345555543 7999999887 46799999999999999877
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHH-HHHhccCCCCc
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAKSVR 229 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~-~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++|+|++|+ ++.. ..+......|++++ +|.++++.++|++++++++ ++.+.....
T Consensus 202 l~~l~~l~~~--~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~~G~~~G~~~~~~~~~~~~~~~~~~-- 275 (395)
T 3nx3_A 202 YKALRKLCDE--KDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTS--AKALGCGLSVGAFVINQKVASNSLEAGDH-- 275 (395)
T ss_dssp HHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGTTTSCCEEEEECHHHHHHHSCTTCC--
T ss_pred HHHHHHHHHH--cCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEe--cccccCCCceEEEEEchhhhhhhcCCccc--
Confidence 9999999999 999999999987 3211 11222234566654 6888766668999999998 777754311
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCc
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDT 307 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 307 (367)
+. .++.+...+++..++++.+.++. ..++..++.+++++.|++. .+....... ..+.
T Consensus 276 --------------~~--~~~~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~ 334 (395)
T 3nx3_A 276 --------------GS--TYGGNPLVCAGVNAVFEIFKEEK---ILENVNKLTPYLEQSLDELINEFDFCKKRK--GLGF 334 (395)
T ss_dssp --------------SS--CBSCCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETT
T ss_pred --------------CC--CCCCCHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--eEEE
Confidence 11 34566666677777787765543 3445555666666666553 122111100 1345
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++++.+++..+..++.+.|.++ ||.+.++. ++++||++....+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~iRi~~~~~~t~e~i 381 (395)
T 3nx3_A 335 MQGLSLDKSVKVAKVIQKCQEN-ALLLISCG----ENDLRFLPPLILQKEHI 381 (395)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHH
T ss_pred EEEEEeCCcchHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHH
Confidence 7778886555778899999755 99998753 57899986555555443
No 197
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.93 E-value=1.1e-23 Score=195.48 Aligned_cols=295 Identities=16% Similarity=0.090 Sum_probs=197.7
Q ss_pred ChHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---------CCC-C
Q 017726 20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-D 85 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---------~~g-d 85 (367)
.++.+.+++.+.... + ..+ ..+...++++.++++++. +.+++++||++|+..++.... .+| +
T Consensus 82 ~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~ 157 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLLGY---DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMA 157 (433)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCC
T ss_pred CCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 667788887775432 1 112 345678899999999973 359999999999999887642 467 8
Q ss_pred eEEEEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 86 RIISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+|++.++.|++... ......| ..+..++.+ |+++++++++. +++++|++++.++++|.+
T Consensus 158 ~vi~~~~~yhg~~~-~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~---~~~~~vi~ep~~~~~G~~ 228 (433)
T 1z7d_A 158 KIVVCKNNFSGRTL-GCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKD---PNVCAFIVEPIQGEAGVI 228 (433)
T ss_dssp EEEEETTC---------------------------CEEEECTT-----CHHHHHHHHTS---TTEEEEEECSSBSTTTSB
T ss_pred eEEEEeCCcCCcch-hhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCC---CCEEEEEEECCCCCCCcc
Confidence 99999988877532 1112122 344555542 89999999952 467888887777889987
Q ss_pred c----cHHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhc
Q 017726 154 N----NLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASK 223 (367)
Q Consensus 154 ~----~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~ 223 (367)
. ++++|.++|++ +|+++|+|++|..... . ++......|++ +++|+++++ ..+|++++++++++.+.
T Consensus 229 ~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~ 304 (433)
T 1z7d_A 229 VPSDNYLQGVYDICKK--YNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVLANDDIMLVIK 304 (433)
T ss_dssp CCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHH--cCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEEECHHHHhhhc
Confidence 6 69999999999 9999999999973211 1 12222346877 557999754 34799999999877665
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCC
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKE 301 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 301 (367)
.... +. .++.+...+++..++++.+.+. +..++..++++++.+.|+++ +++......
T Consensus 305 ~~~~----------------~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~ 363 (433)
T 1z7d_A 305 PGEH----------------GS--TYGGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRDVR 363 (433)
T ss_dssp TTCC----------------CC--TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred cccc----------------cc--cCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3210 11 3356666677777788877664 35667888999999999886 654432111
Q ss_pred ccCCCceEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 302 EWFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.++++.+++. .+..++++.|.++ ||.+.++ .++++|+++....+++++
T Consensus 364 --~~g~~~~i~~~~~~~~~~~~~~~l~~~-Gv~v~~~----~~~~iRi~~~~~~t~e~i 415 (433)
T 1z7d_A 364 --GKGLLCAIEFKNELVNVLDICLKLKEN-GLITRDV----HDKTIRLTPPLCITKEQL 415 (433)
T ss_dssp --EETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEE----TTTEEEECCCTTCCHHHH
T ss_pred --eeeeEEEEEEccChhHHHHHHHHHHHC-CeEEecC----CCCEEEEECCcCCCHHHH
Confidence 1345677887543 4578899999765 9999875 256899987555555443
No 198
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.93 E-value=2.5e-24 Score=199.16 Aligned_cols=294 Identities=16% Similarity=0.077 Sum_probs=198.2
Q ss_pred ChHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-------CC-CeEE
Q 017726 20 IPDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-------~g-d~vl 88 (367)
.++.+.+++.+.... +.+ ....+...++++.+++++|. +.+++++||++|+..++.++.. +| ++|+
T Consensus 74 ~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi 150 (420)
T 2pb2_A 74 CHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFA---ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKII 150 (420)
T ss_dssp TCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSC---SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCC---CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEE
Confidence 356777777764332 111 11236678999999999973 3599999999999999987654 67 4899
Q ss_pred EEeCCcchHHHHHHHHHhCCc------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc---
Q 017726 89 SFLIGQFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT--- 153 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~--- 153 (367)
+.++.|++... ......|.+ +..++.+ |+++++++++ +++++|++++++|++|.+
T Consensus 151 ~~~~~yh~~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~ 220 (420)
T 2pb2_A 151 AFHNAFHGRSL-FTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMD----DHTCAVVVEPIQGEGGVQAAT 220 (420)
T ss_dssp EETTCCCCSSH-HHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCC----TTEEEEEECSEETTTTSEECC
T ss_pred EEeCCcCCcCH-HHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhc----cCceEEEEeCCcCCCCeecCC
Confidence 99888876532 222233432 4555542 8999999997 467999999999988863
Q ss_pred -ccHHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 154 -NNLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 154 -~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
.++++|.++|++ +|+++|+|++|..... . ++......|+++ ++|+++++.++|++++++++++.+.....
T Consensus 221 ~~~l~~l~~l~~~--~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~~~~~l~~~l~~~~~ 296 (420)
T 2pb2_A 221 PEFLKGLRDLCDE--HQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAMLTTQEIASAFHVGSH 296 (420)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTCC----
T ss_pred HHHHHHHHHHHHH--cCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEEEEhHHHHHhhcCCCc
Confidence 358899999999 9999999999963221 1 122223468774 57999765568999999987766543100
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFS 305 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~ 305 (367)
+. .++.+...+++..++++.+.+ ++..++.+++++++.+.|+++ +++...... ..
T Consensus 297 ----------------~~--t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~ 353 (420)
T 2pb2_A 297 ----------------GS--TYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIR--GM 353 (420)
T ss_dssp ----------------CC--EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE--EE
T ss_pred ----------------Cc--ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE--ec
Confidence 11 234566666666667776544 456778888999999999875 333322111 12
Q ss_pred CceEEEEcCCCC--CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 306 DTVTAVIVPSHI--NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 306 ~~~~~~~~~~~~--~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
+.++++.+++.. +..++.+.|.+ +||.+.++. ++.+|+++....++++
T Consensus 354 g~~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~----~~~iRl~~~~~~t~ee 403 (420)
T 2pb2_A 354 GLLIGAELKPKYKGRARDFLYAGAE-AGVMVLNAG----ADVMRFAPSLVVEEAD 403 (420)
T ss_dssp TTEEEEEECGGGTTCHHHHHHHHHH-TTEECEESS----TTEEEECCCTTCCHHH
T ss_pred ceEEEEEECCCchHHHHHHHHHHHH-CCCEEEeCC----CCEEEEECCCCCCHHH
Confidence 446777775332 57789999976 599998753 4689999654444443
No 199
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.93 E-value=3.7e-24 Score=199.87 Aligned_cols=313 Identities=16% Similarity=0.127 Sum_probs=204.9
Q ss_pred hHHHHHHHccCCCCC---CC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--------CCCeEE
Q 017726 21 PDQVIRAMNRNNEDY---RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~---~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--------~gd~vl 88 (367)
++++.+++.+..... .. ........++++.++++++... +++++++||++|+..++.++.. ++|+|+
T Consensus 68 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi 146 (449)
T 3a8u_X 68 RKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL-NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMI 146 (449)
T ss_dssp CHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 677888887754332 11 1223566789999999987654 4699999999999999877543 678999
Q ss_pred EEeCCcchHHHHHHHHHhC------------CceEEEeCCCCC-----CCC--------HHHHHHHHhccCCCCccEEEE
Q 017726 89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGE-----GAK--------LDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-----~~d--------~e~l~~~i~~~~~~~~~lv~~ 143 (367)
+.++.|++... ......| ..+..++.+... .+| ++++++++++...+++++|++
T Consensus 147 ~~~~~yhg~~~-~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~ 225 (449)
T 3a8u_X 147 GRARGYHGVNI-AGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFV 225 (449)
T ss_dssp EETTCCCCSSH-HHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEE
T ss_pred EECCCcCCCCh-hhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99998887532 1122222 134555544321 246 899999997531124577776
Q ss_pred EecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCC-Ccceeee
Q 017726 144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 144 ~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
++.+|++|.+.| +++|.++|++ +|+++|+|++|+ ++.. .++......|++ |++|++++. ..+|+++
T Consensus 226 ~p~~~~tG~~~~~~~~l~~l~~l~~~--~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~~G~~~ 301 (449)
T 3a8u_X 226 EPLAGSAGVLVPPEGYLKRNREICNQ--HNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTNGAIPMGAVI 301 (449)
T ss_dssp CSSBTTTTCBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSSCCEEEE
T ss_pred cCccCCCCCccCCHHHHHHHHHHHHH--hCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccCCCCceEEEE
Confidence 666678999888 9999999999 999999999994 5421 112222346776 556999752 2379999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++++.+.....+... ..+..+. .++.+...+++..++++.+.+. +..++..++.+++++.|+++
T Consensus 302 ~~~~~~~~l~~~~~~~~~-------~~~~~~~--t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~ 369 (449)
T 3a8u_X 302 ASTEIYQTFMNQPTPEYA-------VEFPHGY--TYSAHPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIK 369 (449)
T ss_dssp EEHHHHHHHHTCSSCTTS-------CSSCCCC--TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTT
T ss_pred ECHHHHHHhhccCccccc-------ccccccC--CCcccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHh
Confidence 999988877642110000 0000111 3346666777778888877664 35667888999999999886
Q ss_pred CCccccCCCccCCCceEEEEcCCCCC-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHIN-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+++...... ..+.++++.++.... ..++.+.|.++ ||.+.++ ++++||++....+++++
T Consensus 370 ~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRis~~~~~t~~~i 433 (449)
T 3a8u_X 370 GAKNVIDIR--NFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG-----GDTLQFGPTFNSKPQDL 433 (449)
T ss_dssp TSTTEEEEE--EETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE-----TTEEEECCCTTCCHHHH
T ss_pred cCCCeEEEe--eeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC-----CCEEEEECCCcCCHHHH
Confidence 344332111 234578888854322 23789999766 9999886 27899996555554443
No 200
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.93 E-value=1.3e-23 Score=195.55 Aligned_cols=319 Identities=17% Similarity=0.162 Sum_probs=206.0
Q ss_pred CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---------CCCCCe
Q 017726 17 PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---------LSPGDR 86 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---------~~~gd~ 86 (367)
...+++++++++.+.... ..++ .....++++.+++++|.+ .+++++||++|+..++.++ +.+||+
T Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~ 112 (437)
T 3bb8_A 38 GKVIGTKELQLMVEASLDGWLTT--GRFNDAFEKKLGEYLGVP---YVLTTTSGSSANLLALTALTSPKLGVRALKPGDE 112 (437)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCBS--CHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCE
T ss_pred CCCCCHHHHHHHHHHHHcCCcCC--ChHHHHHHHHHHHHHCCC---cEEEeCCHHHHHHHHHHHhhhcccccccCCCcCE
Confidence 344566777777664332 2223 357889999999999986 3788899999999999887 789999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
|+++.++|++.. ..++..|++++.++.+. ++.+|+++++++++ +++++|++++ ++|...|+++|.++|++
T Consensus 113 Vi~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~---~~g~~~~~~~i~~l~~~ 183 (437)
T 3bb8_A 113 VITVAAGFPTTV--NPTIQNGLIPVFVDVDIPTYNVNASLIEAAVS----DKTKAIMIAH---TLGNLFDLAEVRRVADK 183 (437)
T ss_dssp EEECSSSCHHHH--HHHHHTTCEEEECCEETTTTEECGGGHHHHCC----TTEEEEEEEC---GGGCCCCHHHHHHHHHH
T ss_pred EEECCCCcHHHH--HHHHHcCCEEEEEeccCccCCcCHHHHHHhcC----CCCeEEEEeC---CCCChhcHHHHHHHHHH
Confidence 999999888764 44567899999998875 67889999999997 4679999985 45777999999999999
Q ss_pred cCCCcEEEEeeeeccCceeecccccc--ceEEEecC--CCcccCCCcceeeeeCHHHHHHh-c---cCCCC---c-ee--
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWG--IDVALTGS--QKALSLPTGMGIVCASPKALEAS-K---TAKSV---R-VF-- 231 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~--~d~~~~s~--~K~~~g~~g~g~~~~~~~~~~~~-~---~~~~~---~-~~-- 231 (367)
+|+++|+|++|+.+... +....+ .|+++.|+ .|.+.++. .|+++.+++.+... . ..... . ..
T Consensus 184 --~~~~li~D~a~~~g~~~-~~~~~~~~~d~~~~s~~~~k~l~~g~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (437)
T 3bb8_A 184 --YNLWLIEDCCDALGSTY-DGKMAGTFGDIGTVSFYPAKHITMGE-GGAVFTQSAELKSIIESFRDWGRDCYCAPGCDN 259 (437)
T ss_dssp --HTCEEEEECTTCTTCEE-TTEETTSSSSEEEEECSTTSSSCCSS-CEEEEESCHHHHHHHHHHHBTTBCC--------
T ss_pred --cCCEEEEECccccCceE-CCeecccccCEEEEECcCCcCCCCCC-eEEEEeCCHHHHHHHHHHHHhCccccccccccc
Confidence 99999999999987655 443334 68876664 55565544 48888886654432 1 11110 0 00
Q ss_pred echHHHH-------HHh-hcCCc--cCC---CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 017726 232 FDWKDYI-------KFY-NLGTF--WPY---TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC 297 (367)
Q Consensus 232 ~~~~~~~-------~~~-~~~~~--~~~---~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 297 (367)
.....+. .++ +.++. ..+ ..++...+ ++..+.. +++..++.+++++++.+.|+++ |+.+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~----~l~~l~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 333 (437)
T 3bb8_A 260 TCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAAC----GLAQLER--IEEFVEKRKANFKYLKDALQSCADFIEL 333 (437)
T ss_dssp --------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHGGGGTTTEEC
T ss_pred ccccccccccccccccccccccccccCcccCCCHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHhhccCCcccc
Confidence 0000000 001 11110 011 12332222 2222222 2455566688899999999987 76555
Q ss_pred cCCCccC--C--CceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC----C--------------------CcEEEEe
Q 017726 298 TQKEEWF--S--DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV----A--------------------GKVFRIG 349 (367)
Q Consensus 298 ~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~----~--------------------~~~iRi~ 349 (367)
+...... + ..++.+..+.+.+.+++.+.|.++ ||.++.+..+. + ...+|++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~ 412 (437)
T 3bb8_A 334 PEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEA-KVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIG 412 (437)
T ss_dssp CCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHT-TBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEEC
T ss_pred CCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHC-CCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEec
Confidence 4211111 2 223334442256788999999765 99998775421 0 1249999
Q ss_pred ecCCCCHHHHH
Q 017726 350 HLGHLNEVMFN 360 (367)
Q Consensus 350 ~~~~~~~~~~~ 360 (367)
++...+++|+.
T Consensus 413 ~~~~~t~~di~ 423 (437)
T 3bb8_A 413 IYPGLTHDHLD 423 (437)
T ss_dssp CSTTCCHHHHH
T ss_pred CCCCCCHHHHH
Confidence 88887766544
No 201
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.93 E-value=2.8e-24 Score=200.18 Aligned_cols=307 Identities=17% Similarity=0.076 Sum_probs=195.5
Q ss_pred ChHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~ 93 (367)
.++.+.+++.+.... +. .....+...+++++++++++...++++++++||++|+..++... ..+++.|++.++.
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~ 139 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGA 139 (439)
T ss_dssp SCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTC
T ss_pred CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 456677766653221 11 22334678899999999986554346999999999999998864 3467789998888
Q ss_pred cchHHHHHHHHHhCCc--------------eEEEeCCCCCCC-----CHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 94 QFSLLWIDQQQRLNFN--------------VDVVESDWGEGA-----KLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~--------------~~~v~~~~~~~~-----d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
|++.... .....+.. +..++.+..... |++++++++.+...+++++|++++++|++|.+.
T Consensus 140 yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~ 218 (439)
T 3dxv_A 140 YHGCTVG-SMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIV 218 (439)
T ss_dssp CCCSSHH-HHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBC
T ss_pred CCCCcHH-HHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc
Confidence 8765321 11111211 122333322212 689999999422115778999999999999998
Q ss_pred c----HHHHHHHHHhcCCCcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccC
Q 017726 155 N----LSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 155 ~----~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~ 225 (367)
+ +++|.++|++ ||+++|+|++|+... ...+......|++ |++|.++++.++|++++++++++.+...
T Consensus 219 ~~~~~l~~l~~l~~~--~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG~~~~~~~~~~~~~~~ 294 (439)
T 3dxv_A 219 PPDGFLRKFADICRA--HGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLSAVIAPAEILDCASAF 294 (439)
T ss_dssp CCTTHHHHHHHHHHH--TTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCEEEEEEHHHHTSCSSS
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceEEEEECHHHHhhhcCC
Confidence 8 9999999999 999999999996321 1122222346776 5679997544579999999988766542
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCcc
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEW 303 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~ 303 (367)
.. +. .+ .+...+.+..++++.+.+.. ..++..++.+++++.|+++ .+.......
T Consensus 295 ~~----------------~~--t~-~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-- 350 (439)
T 3dxv_A 295 AM----------------QT--LH-GNPISAAAGLAVLETIDRDD---LPAMAERKGRLLRDGLSELAKRHPLIGDIR-- 350 (439)
T ss_dssp SC----------------CT--TT-TCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--
T ss_pred Cc----------------CC--Cc-ccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--
Confidence 11 11 33 55656666666777665543 4556666777777777664 122111100
Q ss_pred CCCceEEEEc--------CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 304 FSDTVTAVIV--------PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 304 ~~~~~~~~~~--------~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
..+.++++.+ ++..+..++.+.|.++ ||.+.++.. .+.++||++....++++
T Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~ 410 (439)
T 3dxv_A 351 GRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM--NGNVLEFTPPLTITETD 410 (439)
T ss_dssp EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST--TSCEEEECCCTTCCHHH
T ss_pred EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEECCCCCCHHH
Confidence 1233555655 2223356788888776 999988632 24789998655555443
No 202
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.93 E-value=1.5e-23 Score=194.62 Aligned_cols=309 Identities=15% Similarity=0.082 Sum_probs=185.2
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEE
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl 88 (367)
++.+.+++.+.... .......+...+++++++++++.+.+ ++++++||++|+..++..+. .+++.|+
T Consensus 47 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi 125 (430)
T 3i4j_A 47 RAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTF-RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVI 125 (430)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCC-EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 56677766653211 11122346678999999999987654 59999999999999988765 4578999
Q ss_pred EEeCCcchHHHHHHHHHhCC--------------ceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCC-Cc
Q 017726 89 SFLIGQFSLLWIDQQQRLNF--------------NVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNET-AT 150 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~--------------~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n-~t 150 (367)
+.++.|++..... ....+. .+..++.+.. +..|++++++++++...+++++|+++.++| ++
T Consensus 126 ~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~ 204 (430)
T 3i4j_A 126 TRVPSYHGASLGS-LAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASD 204 (430)
T ss_dssp EETTC--------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGG
T ss_pred EEeCCcCCCCccc-ccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcC
Confidence 9999887754211 111111 3444444322 223668999998752112456666666667 88
Q ss_pred ccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccc-cccceEEEecCCCcccCC-CcceeeeeCHHHH
Q 017726 151 GVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMD-EWGIDVALTGSQKALSLP-TGMGIVCASPKAL 219 (367)
Q Consensus 151 G~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~-~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~ 219 (367)
|.+.+ +++|.++|++ +|+++|+|++|..... . .... ....|+++ ++|.+++. ..+|+++++++++
T Consensus 205 G~~~~~~~~l~~l~~l~~~--~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~G~~r~G~~~~~~~i~ 280 (430)
T 3i4j_A 205 AALAPAPGYYERVRDICDE--AGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLAAGYAPLAGLLAAPQVY 280 (430)
T ss_dssp TTCCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGTTTSSCCEEEEECHHHH
T ss_pred CcccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--EcccccCCccccEEEEECHHHH
Confidence 98776 8999999999 9999999999873211 1 1111 22356665 46998754 4579999999998
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-----CC
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-----GL 294 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~ 294 (367)
+.+..... . +..+. .++.+...+.+..++++.+.+++ ..++.+++.+++++.|+++ ++
T Consensus 281 ~~~~~~~~-~-----------~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ 343 (430)
T 3i4j_A 281 ETVMGGSG-A-----------FMHGF--TYAGHPVSVAAGLSVLDIVERED---LTGAAKERGAQLLAGLQALQARFPQM 343 (430)
T ss_dssp HHHHHTTC-B-----------CCCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHHhccCC-c-----------ccccC--CCCCCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 88764310 0 00121 44567766677777787766643 3445555555666655553 23
Q ss_pred ccccCCCccCCCceEEEEcCCC---------CCHHHHHHHHHhhCCeEEccCCC---CCCCcEEEEeecCCCCHHH
Q 017726 295 KNCTQKEEWFSDTVTAVIVPSH---------INSSEIVRRAWQRYNLSLGLGLN---KVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~~gv~v~~g~~---~~~~~~iRi~~~~~~~~~~ 358 (367)
....+ . +.++++.+++. ....++++.|.++ ||.++++.. +..+.++||++....+.++
T Consensus 344 ~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~ 413 (430)
T 3i4j_A 344 MQVRG----T-GLLLGVVLGDLATGQAFETPGIASRIGAAALKR-GLITYPGSGAEPNGRGDHLLLGPPLSITAAE 413 (430)
T ss_dssp EEEEE----E-TTEEEEEEC------------CHHHHHHHHHHT-TEECC-----------CEEEECCCTTCCHHH
T ss_pred EEEEE----E-EEEEEEEeccccccCCCccHHHHHHHHHHHHhC-CCEEEecccccCCCCCCEEEEECCCCCCHHH
Confidence 33332 2 33566666321 1136788888755 999998722 2235679999765555443
No 203
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.92 E-value=4.3e-24 Score=199.31 Aligned_cols=309 Identities=11% Similarity=0.066 Sum_probs=204.0
Q ss_pred hHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-------CC-CeEE
Q 017726 21 PDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-------~g-d~vl 88 (367)
++++.+++.+.... +. .....+...+++++++++++...+ .+++++||++|+..++..+.. +| +.|+
T Consensus 93 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii 171 (457)
T 3tfu_A 93 HPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLM 171 (457)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 55666666654221 21 222346677999999999976543 599999999999999877543 45 4788
Q ss_pred EEeCCcchHHHHHHHH------------HhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEe-cCCCcccc
Q 017726 89 SFLIGQFSLLWIDQQQ------------RLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVH-NETATGVT 153 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~------------~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~-~~n~tG~~ 153 (367)
+.++.|++........ .....+..++.+.. ...|+++++++++++. +++++|++++ ++|++|.+
T Consensus 172 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~-~~~aavi~ep~~~~~~G~~ 250 (457)
T 3tfu_A 172 TWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA-GELAAVVVEPVVQGAGGMR 250 (457)
T ss_dssp EETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG-GGEEEEEECSSEECTTTCE
T ss_pred EEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC-CCEEEEEEeCCCcCCCCcc
Confidence 8888887753211111 11123444444322 1247899999998543 4678888888 89999988
Q ss_pred cc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhc
Q 017726 154 NN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASK 223 (367)
Q Consensus 154 ~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~ 223 (367)
.+ +++|.++|++ +|+++|+|+++..... ..+......|++ +++|.++|+ .++|++++++++++.+.
T Consensus 251 ~~~~~~l~~l~~l~~~--~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~lG~v~~~~~i~~~~~ 326 (457)
T 3tfu_A 251 FHDPRYLHDLRDICRR--YEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSLAATLCTADVAHTIS 326 (457)
T ss_dssp ECCTHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--cCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcceEEEEEcHHHHHHhh
Confidence 86 8999999999 9999999999873221 112222346777 557899775 36899999999988874
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
......+ ..+. .++.+...+++..++++.+.+++ ..++..++.+++++.|+++ .++.+..-.
T Consensus 327 ~~~~~~~-----------~~~~--t~~~n~~a~aaa~aaL~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~~vr- 389 (457)
T 3tfu_A 327 AGAAGAL-----------MHGP--TFMANPLACAVSVASVELLLGQD---WRTRITELAAGLTAGLDTARALPAVTDVR- 389 (457)
T ss_dssp HSSSCSC-----------CCCC--TTTTCHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHGGGGGSTTEEEEE-
T ss_pred ccCCCce-----------eEec--CCCcCHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHhcCCCeeeee-
Confidence 2111100 1122 34567777777777888776653 4557778888999998876 332222111
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.++++.+++..+..++++.|.++ ||.+++. ++.+|+++....+++++
T Consensus 390 -~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-----~~~lRi~p~~~~t~eei 439 (457)
T 3tfu_A 390 -VCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-----RNLVYAMPPYICTPAEI 439 (457)
T ss_dssp -ECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCHHHH
T ss_pred -cCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-----CCEEEEECCCCCCHHHH
Confidence 13456777876656678999999866 9998862 36899986555554433
No 204
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=1e-23 Score=195.09 Aligned_cols=302 Identities=12% Similarity=0.041 Sum_probs=195.4
Q ss_pred hHHHHHHHccCCCC--CCC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-CCCeEEEEeCCcc
Q 017726 21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-PGDRIISFLIGQF 95 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-~gd~vl~~~~~~~ 95 (367)
++.+.+++.+.... +.+ ........++++.++++++.+.+++|++++||++|+..++..+.. +|++|++.+|.|+
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh 140 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFH 140 (419)
T ss_dssp CHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCC
T ss_pred CHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcC
Confidence 57788887764322 111 112355678999999999986234699999999999998875432 3899999999887
Q ss_pred hHHHHHHHHHh-------------CCceEEEeCCCCCC----------------CCHHHHH-HHHhccCC-CCccEEEEE
Q 017726 96 SLLWIDQQQRL-------------NFNVDVVESDWGEG----------------AKLDVLA-SKLAADTA-HTIKAICIV 144 (367)
Q Consensus 96 ~~~~~~~~~~~-------------g~~~~~v~~~~~~~----------------~d~e~l~-~~i~~~~~-~~~~lv~~~ 144 (367)
+.... ..... ..++..++.+.++. +|+++++ +++++... +++++|+++
T Consensus 141 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~ 219 (419)
T 2eo5_A 141 GRTFG-SISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFE 219 (419)
T ss_dssp CSSHH-HHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEEC
T ss_pred CCCHh-hHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEe
Confidence 64321 11111 13577787765432 3678999 88874210 145566655
Q ss_pred ecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCC-Ccceeeee
Q 017726 145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 145 ~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
..+|+||.+.+ +++|.++|++ +|+++|+|++|+ ++.. .++......|++ +++|+++++ .++|++++
T Consensus 220 p~~~~tG~~~~~~~~l~~l~~l~~~--~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~riG~~~~ 295 (419)
T 2eo5_A 220 PIQGEGGYVIPPKNFFAELQKLAKK--YGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGGGIMPIGATIF 295 (419)
T ss_dssp SSBTTTTSBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTTSCCEEEEE
T ss_pred CccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccCCccceEEEEE
Confidence 55567898766 9999999999 999999999997 3211 122222345766 467999765 67899999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCC
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL 294 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~ 294 (367)
+++++ .+ ... ..+ +++.+...+.+..++++.+.+ ..++++++++++.+.|+++ +
T Consensus 296 ~~~~~-~~-~~~---------------~~~---t~~~n~~~~~aa~aal~~~~~-----~~~~~~~~~~~l~~~L~~~-~ 349 (419)
T 2eo5_A 296 RKDLD-FK-PGM---------------HSN---TFGGNALACAIGSKVIDIVKD-----LLPHVNEIGKIFAEELQGL-A 349 (419)
T ss_dssp EGGGC-CC-------------------------CCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTS-S
T ss_pred chHhh-cC-Ccc---------------cCC---CCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh-h
Confidence 98875 44 210 011 334667666777777776443 6778889999999999776 3
Q ss_pred ccccCCCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhh
Q 017726 295 KNCTQKEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLL 364 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l 364 (367)
....+ . +.++++.+. +..... +++.|. ++||.+.++. ++++||++....+++ +...+.|
T Consensus 350 ~~~~~----~-g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~----~~~lRis~~~~~t~e~i~~~l~~l 411 (419)
T 2eo5_A 350 DDVRG----I-GLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG----RSAIRVIPPLVISEEEAKQGLDIL 411 (419)
T ss_dssp SEEEE----E-TTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred hheEe----e-eEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHH
Confidence 22222 2 346667772 111245 888887 4599998753 468999764444443 4334444
No 205
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.92 E-value=1.2e-23 Score=194.58 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEE-eCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVV-ESDWG 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v-~~~~~ 118 (367)
....++++.+++++|.+. .++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|++++.+ +.+
T Consensus 58 ~~~~~l~~~la~~~g~~~---~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 132 (421)
T 2ctz_A 58 PTVDVLEKRLAALEGGKA---ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-- 132 (421)
T ss_dssp HHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC--
T ss_pred hHHHHHHHHHHHHhCCCc---eEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC--
Confidence 567899999999999763 355567799999999988899999999999988864 333357789999888 654
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee-ccCceeeccccccceEEEe
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS-SICAIDFRMDEWGIDVALT 197 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~-~~~~~~~~~~~~~~d~~~~ 197 (367)
|+++++++++ +++++|++++++||+|.+.|+++|.++|++ +|+++|+|++| +.+.. ......++|++++
T Consensus 133 ---d~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~--~g~~livD~~~~~~g~~-~~~~~~~~Di~~~ 202 (421)
T 2ctz_A 133 ---RPEEFLALTD----EKTRAWWVESIGNPALNIPDLEALAQAARE--KGVALIVDNTFGMGGYL-LRPLAWGAALVTH 202 (421)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECGGGGGGTS-CCGGGGTCSEEEE
T ss_pred ---CHHHHHHhhc----cCCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCccccccc-CCccccCCeEEEE
Confidence 7999999997 477999999999999999999999999999 99999999999 76532 2223457899999
Q ss_pred cCCCcccCCCc-ceeeee
Q 017726 198 GSQKALSLPTG-MGIVCA 214 (367)
Q Consensus 198 s~~K~~~g~~g-~g~~~~ 214 (367)
|++|+++++.+ +|++++
T Consensus 203 s~~K~l~~~g~~~G~~~~ 220 (421)
T 2ctz_A 203 SLTKWVGGHGAVIAGAIV 220 (421)
T ss_dssp ETTTTTTCSSCCCCEEEE
T ss_pred CCcccccCCCCcEEEEEE
Confidence 99999986543 565555
No 206
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.92 E-value=3.2e-23 Score=189.84 Aligned_cols=282 Identities=12% Similarity=0.079 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHH-HHHhCCceEEEeCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQ-QQRLNFNVDVVESDW 117 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~-~~~~g~~~~~v~~~~ 117 (367)
.+...++++.++++.|.+ .+++++||++|+.. +.+++.+||+|++..+.|++.. +... .+..|+++..++.+
T Consensus 66 ~p~~~~l~~~la~l~g~~---~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 140 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGGT---RAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT- 140 (400)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-
T ss_pred CHHHHHHHHHHHHHhCCC---CEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-
Confidence 366789999999999865 25677888999998 5678899999999999887653 3333 56679999999875
Q ss_pred CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEe
Q 017726 118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT 197 (367)
Q Consensus 118 ~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~ 197 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+... .....++|+++.
T Consensus 141 ----d~~~l~~~i~----~~~~~v~~e~~~np~G~~~~l~~i~~la~~--~g~~livDe~~~~~~~~-~~~~~g~div~~ 209 (400)
T 3nmy_A 141 ----DPAAFKAAIR----ADTKMVWIETPTNPMLKLVDIAAIAVIARK--HGLLTVVDNTFASPMLQ-RPLSLGADLVVH 209 (400)
T ss_dssp ----SHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTHHHHC-CGGGGTCSEEEE
T ss_pred ----CHHHHHHHhc----cCCCEEEEECCCCCCCeeecHHHHHHHHHH--cCCEEEEECCCcccccC-ChhhcCCcEEEe
Confidence 8999999997 467999999999999999999999999999 99999999998754322 222347999999
Q ss_pred cCCCcccCCC-cc-e--eeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHH
Q 017726 198 GSQKALSLPT-GM-G--IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN 273 (367)
Q Consensus 198 s~~K~~~g~~-g~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~ 273 (367)
|++|+++|+. .+ | ++..++++.+++.... .. .+. +.+.... ..++..+ ..+..
T Consensus 210 S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~-------------~~-~g~----~~~~~~a---~~~l~~l--~~l~~ 266 (400)
T 3nmy_A 210 SATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQ-------------NS-IGG----VQGPFDS---FLALRGL--KTLPL 266 (400)
T ss_dssp ETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHH-------------HH-HCC----BCCHHHH---HHHHHHH--TTHHH
T ss_pred cCccccCCCCCcceeEEEEeCCHHHHHHHHHHH-------------Hh-cCC----CCCHHHH---HHHHHhH--hHHHH
Confidence 9999998662 23 5 3344677766665320 00 111 2333222 2222222 22566
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCccc-cCCC-c-----------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccCC
Q 017726 274 VIERHRRLGKATRLAVEAW-GLKNC-TQKE-E-----------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~-~-----------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g~ 338 (367)
+.++..+++..+.+.|++. .+..+ .|.- . ...+.+++|.++.+. ....+++.|. ..++.+..|.
T Consensus 267 r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~-~~~~~~s~G~ 345 (400)
T 3nmy_A 267 RMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTE-LFTLAESLGG 345 (400)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCS-SSEECSCCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCC-cceEecCCCC
Confidence 7778899999999999886 43322 2210 0 123568889884221 1334555442 3343333331
Q ss_pred C-----------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 339 N-----------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 339 ~-----------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
. ...+..+|+| .+..+.+|+...+
T Consensus 346 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRls-vGle~~~dli~dl 392 (400)
T 3nmy_A 346 VESLVNHPAVMTHASIPVARREQLGISDALVRLS-VGIEDLGDLRGDL 392 (400)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEE-CCSSCHHHHHHHH
T ss_pred CcceeeCccccccccCCHHHHHhcCCCcCeEEEE-eCcCCHHHHHHHH
Confidence 1 0124579999 5777777766543
No 207
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.92 E-value=2.1e-24 Score=202.62 Aligned_cols=289 Identities=13% Similarity=0.096 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC-----C----CeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP-----G----DRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~-----g----d~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
.....+++++++++++.+ .+++|+||++|+..++.++..+ | |.|++. +.|+... .......|..+.
T Consensus 73 ~~~~~~l~~~la~~~~~~---~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~-~~~~~~~~~~~~ 147 (467)
T 2oqx_A 73 SRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTT-QGHSQINGCTVR 147 (467)
T ss_dssp CHHHHHHHHHHHHHHCCS---EEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHH-HHHHHHTTCEEE
T ss_pred CchhHHHHHHHHHHhCcC---cEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccc-hhhhhccCccee
Confidence 356679999999999863 4899999999999999887777 8 887766 5454432 223344566554
Q ss_pred EEe------CC----CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-ccccc---HHHHHHHHHhcCCCcEEEEeee
Q 017726 112 VVE------SD----WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 112 ~v~------~~----~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~---~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
... .+ .++.+|+++|++++++...+++++|++++++||+ |.+++ +++|.++|++ ||+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~--~gi~li~D~a 225 (467)
T 2oqx_A 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK--YDIPVVMDSA 225 (467)
T ss_dssp ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH--TTCCEEEECT
T ss_pred eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH--cCCEEEEEch
Confidence 431 11 3456899999999985211257999999999998 77765 7789999999 9999999976
Q ss_pred ecc-C----------ceeecccc------ccceEEEecCCCcccCCCcceeeeeCHH-HHH---HhccCCCCceeechHH
Q 017726 178 SSI-C----------AIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASPK-ALE---ASKTAKSVRVFFDWKD 236 (367)
Q Consensus 178 ~~~-~----------~~~~~~~~------~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~~---~~~~~~~~~~~~~~~~ 236 (367)
+.. + ....+... ...|++++|+||+++.+.| |+++++++ +++ ++....
T Consensus 226 ~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~---------- 294 (467)
T 2oqx_A 226 RFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLC---------- 294 (467)
T ss_dssp THHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHH----------
T ss_pred hhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhh----------
Confidence 654 1 11111111 2468889999999965545 77777766 333 332110
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL-ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
.+..+.....+.+...+.++..++ .+ .+ ++..++..++++++.+.|++.|+++. + ..+.++++.+++
T Consensus 295 ---~~~~~~~~~~~~~~~~~~al~~~l---~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~----~~~~~~~~~~~~ 362 (467)
T 2oqx_A 295 ---VVQEGFPTYGGLEGGAMERLAVGL---YD-GMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-Q----AGGHAAFVDAGK 362 (467)
T ss_dssp ---HHTTSSCCCCCCCHHHHHHHHHHH---HH-TTCHHHHHHHHHHHHHHHHHHHHTTCCEE-E----ECSSCEEEEHHH
T ss_pred ---hccCCcccccchhhhHHHHHHHhh---Hh-hhhHHHHHHHHHHHHHHHHHHHHCCCeee-c----CCceEEEEechh
Confidence 000011111223333322332222 21 12 23445567889999999998887776 4 244567777731
Q ss_pred ---CCC-----HHHHHHHHHhhCCeEEccCCC------CC-------CCcEEEEeecCC-CCHHHH
Q 017726 316 ---HIN-----SSEIVRRAWQRYNLSLGLGLN------KV-------AGKVFRIGHLGH-LNEVMF 359 (367)
Q Consensus 316 ---~~~-----~~~l~~~L~~~~gv~v~~g~~------~~-------~~~~iRi~~~~~-~~~~~~ 359 (367)
+.+ ..++++.|.++.||.+.++.. +. ..+++|+++... .+++++
T Consensus 363 ~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i 428 (467)
T 2oqx_A 363 LLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHM 428 (467)
T ss_dssp HSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHH
T ss_pred hcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHH
Confidence 334 344588884445999987321 10 126899998755 555443
No 208
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.92 E-value=5.7e-25 Score=203.60 Aligned_cols=265 Identities=8% Similarity=-0.009 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHcc--------CCCCCeEEEEeCCcchHHHHHHHHHhCCc
Q 017726 44 TKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNT--------LSPGDRIISFLIGQFSLLWIDQQQRLNFN 109 (367)
Q Consensus 44 ~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~g~~ 109 (367)
..++|+.++++++ .+ +++|++|+|+++++.+++.++ +.+||.|+++.|.|.++. ..++..|.+
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~-~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~--~~~~~~g~~ 178 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAK-DRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR--EQTKYFDKK 178 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCT-TCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH--HHHHHSCBT
T ss_pred hHHHHHHHHHHHHHhCCcCCC-CCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHH--HHHHHcCCe
Confidence 5788999998886 33 346999999999999999998 899999999999776543 556778888
Q ss_pred eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee-eccc
Q 017726 110 VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID-FRMD 188 (367)
Q Consensus 110 ~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~~~~ 188 (367)
++.. .+|+++++++++ +++|+|++++|+||||.+++ + +++ ++..++|+.+...... ..+.
T Consensus 179 ~~~~------~~d~~~l~~~~~----~~~k~v~l~~p~NPtG~~~~-~----~l~----~~~~i~d~~~~~~~~s~~~~~ 239 (427)
T 2hox_A 179 GYVW------AGNAANYVNVSN----PEQYIEMVTSPNNPEGLLRH-A----VIK----GCKSIYDMVYYWPHYTPIKYK 239 (427)
T ss_dssp TEEE------EEEGGGGTTCSC----GGGEEEEEESSCTTTCCCCC-C----SST----TCEEEEECTTCSTTTSCCCSC
T ss_pred eeee------cCCHHHHHHhhc----CCceEEEEcCCCCCcccccH-H----HHc----CCCEEEeecccCCCCCccccC
Confidence 7643 357888887776 36799999999999999999 3 333 3467788765321111 1221
Q ss_pred cccceEEEecCCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH
Q 017726 189 EWGIDVALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL 265 (367)
Q Consensus 189 ~~~~d~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~ 265 (367)
.+.+++++|+||.++ ++| +|++++ ++++++++..... . . .++.+.....++..++..
T Consensus 240 -~~~~i~~~S~SK~~g-~~G~RiG~~~~~~~~l~~~l~~~~~-------------~--~---~~~~~~~~q~a~~~~L~~ 299 (427)
T 2hox_A 240 -ADEDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYMT-------------K--N---TEGTPRETQLRSLKVLKE 299 (427)
T ss_dssp -BCCSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHHH-------------H--H---TSSCCHHHHHHHHHHHHH
T ss_pred -CCceEEEEeChhcCC-CCCceEEEEEECCHHHHHHHHHHHH-------------h--c---CCCCCHHHHHHHHHHhhc
Confidence 367999999999884 556 699999 5888887764210 0 0 112444333344445543
Q ss_pred HHH---------hC-hHHHHHHHHHHHHHHHHHHHHc-CCcc--cc-CCC-------ccCCCceEEEEcCCCCCHHHHHH
Q 017726 266 IFE---------EG-LENVIERHRRLGKATRLAVEAW-GLKN--CT-QKE-------EWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 266 ~~~---------~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~-~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
..+ .. +++.++++.++++++.+.|+++ |+.+ +. +.. ...++.+++++++. +..++++
T Consensus 300 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--~~~~~~~ 377 (427)
T 2hox_A 300 VVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCY 377 (427)
T ss_dssp HHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--GGGCSHH
T ss_pred chhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--cHHHHHH
Confidence 221 11 5567788899999999999987 7765 22 210 11346678888853 4567888
Q ss_pred HHHhhCCeEEccCCCCC-CCcEEEEeecC
Q 017726 325 RAWQRYNLSLGLGLNKV-AGKVFRIGHLG 352 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~-~~~~iRi~~~~ 352 (367)
.|.+++||.+++|..+. ..++||||+..
T Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~Ris~~~ 406 (427)
T 2hox_A 378 QTFQNGRINTQNGVGFEASSRYVRLSLIK 406 (427)
T ss_dssp HHHHHTTEECEEGGGGTSCTTEEEEECSS
T ss_pred HHHHHCCEEEcCCCccCCCCCEEEEEecC
Confidence 88767799999985443 35789999765
No 209
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.91 E-value=3.1e-24 Score=199.60 Aligned_cols=304 Identities=14% Similarity=0.118 Sum_probs=194.0
Q ss_pred ChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--CCCeEEEEeCCc
Q 017726 20 IPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--PGDRIISFLIGQ 94 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--~gd~vl~~~~~~ 94 (367)
.++++.+++.+.... ..++ .....+++++++++++ . .+.+++++||++|+..++..... ++++|++..+.|
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~-~-~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~y 147 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTP--TALEVKFAKMLKEAMP-A-LDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCY 147 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSC--CHHHHHHHHHHHHHCT-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred CCHHHHHHHHHHHHhCcCCCCC--CHHHHHHHHHHHHhCC-C-CCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCcc
Confidence 367777777764322 2222 3566789999999987 3 34699999999999999876543 678999999988
Q ss_pred chHHHHHHHHHhCC-------------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 95 FSLLWIDQQQRLNF-------------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 95 ~~~~~~~~~~~~g~-------------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
++.... .....|. .+..++.+ |++++++++++.+ +++++|++++++|++|.+.+
T Consensus 148 hg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~ 220 (434)
T 3l44_A 148 HGHSDL-VLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWG-HEVAAILVEPIVGNFGIVEP 220 (434)
T ss_dssp CCSSGG-GGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCC
T ss_pred CCCcHH-HHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCC-CCEEEEEEcCCCCCCCCccC
Confidence 764311 0111111 23333322 7999999998543 35677888777788888887
Q ss_pred ----HHHHHHHHHhcCCCcEEEEeeeeccC---ce-eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 156 ----LSKVRKLLDEYRHPALFLVDGVSSIC---AI-DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 156 ----~~~i~~~~~~~~~~~~vi~D~~~~~~---~~-~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
+++|.++|++ +|+++|+|++|... .. ..+......|+++ ++|.++++.++|++++++++++.+.....
T Consensus 221 ~~~~l~~l~~l~~~--~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~~~~~i~~~~~~~~~ 296 (434)
T 3l44_A 221 KPGFLEKVNELVHE--AGALVIYDEVITAFRFMYGGAQDLLGVTPDLTA--LGKVIGGGLPIGAYGGKKEIMEQVAPLGP 296 (434)
T ss_dssp CTTHHHHHHHHHHT--TTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEECHHHHTTBTTTSS
T ss_pred CHHHHHHHHHHHHH--cCCEEEEeccccceeccccHHHHHcCCCCCeee--hhhhhcCCcCeeeEEEcHHHHHhhccCCC
Confidence 9999999999 99999999999732 11 0112223456665 46888766678999999999877653210
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCcc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEW 303 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~ 303 (367)
. ..+. +++.+...+++..++++.+.++ +..++..++.+++++.|+++ ++....+
T Consensus 297 --~-----------~~~~--t~~~~~~a~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---- 354 (434)
T 3l44_A 297 --A-----------YQAG--TMAGNPASMASGIACLEVLQQE---GLYEKLDELGATLEKGILEQAAKHNIDITLN---- 354 (434)
T ss_dssp --B-----------CCCC--TTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE----
T ss_pred --c-----------ccCC--CCCcCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE----
Confidence 0 0121 4456776667777777766553 34556666777777777663 3211111
Q ss_pred CCCceEEEEcCCC-C------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 304 FSDTVTAVIVPSH-I------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 304 ~~~~~~~~~~~~~-~------------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
..+.++.+.+.+. . ...++.+.|.++ ||.++++.. ..+|+++....++.+...++|+
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~rl~~~~t~e~i~~~l~~l~ 424 (434)
T 3l44_A 355 RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSKY----EAWFLTTEHTKEDIEYTIEAVG 424 (434)
T ss_dssp EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSSTT----CCEECCTTCCHHHHHHHHHHHH
T ss_pred eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecCC----CcEEEecccCHHHHHHHHHHHH
Confidence 1334566655221 1 125688888765 999987632 4589875445455555555544
No 210
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.91 E-value=1e-22 Score=189.95 Aligned_cols=310 Identities=15% Similarity=0.059 Sum_probs=190.9
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC----C----CCeEE
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----P----GDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~----~----gd~vl 88 (367)
++++.+++.+.... + ......+...+++++++++++... +.+++++||++|+..++..... + +++|+
T Consensus 62 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi 140 (448)
T 3dod_A 62 KKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKL-TRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFI 140 (448)
T ss_dssp CHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 56677776664322 1 112234567789999999986543 4699999999999999987654 4 49999
Q ss_pred EEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCC-----------CHHHHHHHHhccCCCCccEEEEEe
Q 017726 89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGA-----------KLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~-----------d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
+..+.|++...... ...+ ..+..++.+...+. |++++++++++.. +++++|+++.
T Consensus 141 ~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep 218 (448)
T 3dod_A 141 AMKNGYHGDTIGAV-SVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHH-EEIAALSIES 218 (448)
T ss_dssp EEC------------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHG-GGEEEEEEES
T ss_pred EECCCCCCccHHHH-HhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCC-CCEEEEEEeC
Confidence 99998877542111 1111 23445555433322 4789999987432 3567888888
Q ss_pred cC-CCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceeeee
Q 017726 146 NE-TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 146 ~~-n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
++ |++|.+.+ +++|+++|++ ||+++|+|++|+.... .........|++++ +|.++++ .++|++++
T Consensus 219 ~~~~~~G~~~~~~~~l~~l~~l~~~--~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~--sK~l~~G~~~ig~v~~ 294 (448)
T 3dod_A 219 MVQGASGMIVMPEGYLAGVRELCTT--YDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAA--GKGITGGYLPIAVTFA 294 (448)
T ss_dssp SEESTTTCEECCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEE
T ss_pred cccCCCCeecCCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccchhhhhhcCCCCCEEEe--cccccCCcCceEEEEE
Confidence 87 89997776 8999999999 9999999999873211 12222234576654 6999765 36799999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G 293 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g 293 (367)
++++++.+......... +..+. .++.+...+++..++++.+.+++ ..++.+++.+++++.|+++ +
T Consensus 295 ~~~~~~~~~~~~~~~~~---------~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~l~~ 360 (448)
T 3dod_A 295 TEDIYKAFYDDYENLKT---------FFHGH--SYTGNQLGCAVALENLALFESEN---IVEQVAEKSKKLHFLLQDLHA 360 (448)
T ss_dssp EHHHHHTTCSCGGGCCC---------CCCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHhhhccccCCc---------ccccC--CCCcCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHhc
Confidence 99998877641000000 00111 34566666677777887776643 4556666777777777664 3
Q ss_pred CccccCCCccCCCceEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+.....-. ..+.++++.+++..+ ..++++.|.++ ||.+.++ +.++|+++....+++++
T Consensus 361 ~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-----~~~iRi~~~~~~t~e~i 429 (448)
T 3dod_A 361 LPHVGDIR--QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL-----GDVIAFLPPLASTAEEL 429 (448)
T ss_dssp STTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE-----TTEEEECCCTTCCHHHH
T ss_pred CCCeEEEE--eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc-----CCEEEEECCCCCCHHHH
Confidence 33222100 134466777754322 36788888765 9999875 37899976555554433
No 211
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.91 E-value=4.3e-23 Score=191.77 Aligned_cols=310 Identities=13% Similarity=0.101 Sum_probs=199.2
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~~ 94 (367)
++.+.+++.+.... + .++ ......++++.++++++.+. ++|++++||++|+..++.... ..+++|++.++.|
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~-~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~y 138 (433)
T 1zod_A 61 HPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANITPPGL-DRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSW 138 (433)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHSCTTC-CEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhCCCCc-CEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCc
Confidence 66777777664321 1 111 12556789999999998764 469999999999999987532 2457899999988
Q ss_pred chHHHHHHHHHh-----------CCceEEEeCCCC----C--------CCCHHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 95 FSLLWIDQQQRL-----------NFNVDVVESDWG----E--------GAKLDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 95 ~~~~~~~~~~~~-----------g~~~~~v~~~~~----~--------~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
++..... .... ...+..++.+.. + .+|++++++++++...+++++|+++..+|++|
T Consensus 139 hg~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G 217 (433)
T 1zod_A 139 HGMTGAA-ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGG 217 (433)
T ss_dssp CCSSHHH-HHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTT
T ss_pred CCCChhH-HhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCC
Confidence 7754211 1111 123455544321 1 13589999998752112567777665568899
Q ss_pred cccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHh
Q 017726 152 VTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS 222 (367)
Q Consensus 152 ~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~ 222 (367)
.+.+ +++|.++|++ +|+++|+|++|+ ++.. .++......|++ |++|+++++.++|++++++++++.+
T Consensus 218 ~~~~~~~~l~~l~~l~~~--~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~~~~~~~ 293 (433)
T 1zod_A 218 IIELPDGYMAALKRKCEA--RGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSAAIEERA 293 (433)
T ss_dssp CEECCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhHHHHHhh
Confidence 8766 9999999999 999999999998 3311 112222345665 5679998655689999999998877
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCC
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQK 300 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~ 300 (367)
..... . .+. .++.+...+++..++++.+.+.+ ..++..++++++++.|+++ .+......
T Consensus 294 ~~~~~-------------~-~~~--t~~~~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 354 (433)
T 1zod_A 294 HELGY-------------L-FYT--THVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDV 354 (433)
T ss_dssp HHTTC-------------C-CCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ccCCC-------------C-CCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 64210 0 011 33456666677778888776654 4567777888888888774 22222110
Q ss_pred CccCCCceEEEEcCCC--------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 301 EEWFSDTVTAVIVPSH--------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 301 ~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
. ..+.++++.+++. .+..++.+.|.+ .||.+.++.....++++||++....+++++
T Consensus 355 ~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i 418 (433)
T 1zod_A 355 R--GRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPGMGGVFRIAPPLTVSEDEI 418 (433)
T ss_dssp E--EETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTTSCCEEEECCCTTCCHHHH
T ss_pred E--EEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCCCCCEEEEECCcCCCHHHH
Confidence 1 1234666766421 236678998875 599999875432247899986555554443
No 212
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.91 E-value=2.5e-22 Score=187.94 Aligned_cols=313 Identities=14% Similarity=0.050 Sum_probs=193.3
Q ss_pred hHHHHHHHccCCC----CCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeE
Q 017726 21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~v 87 (367)
++.+.+++.+... .+. .....+...+++++++++++... +.+++++||++|+..++..+. .+++.|
T Consensus 69 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~v 147 (460)
T 3gju_A 69 RQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGM-SRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKI 147 (460)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCc-CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4666666665321 111 11223567789999999876554 469999999999999998765 356899
Q ss_pred EEEeCCcchHHHHHHHHHhC------------CceEEEeCCCCC-----CCC--------HHHHHHHHhccCCCCccEEE
Q 017726 88 ISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGE-----GAK--------LDVLASKLAADTAHTIKAIC 142 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-----~~d--------~e~l~~~i~~~~~~~~~lv~ 142 (367)
++.++.|++...... ...+ ..+..++.+... ..+ +++|++++++...+++++|+
T Consensus 148 i~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii 226 (460)
T 3gju_A 148 ISRWRGYHGSGVMTG-SLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFI 226 (460)
T ss_dssp EEETTCCCCSSHHHH-HHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred EEECCCcCCCCHHHh-hccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999998887642211 1111 234556544311 122 58899988743213568888
Q ss_pred EEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCC-Ccceee
Q 017726 143 IVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIV 212 (367)
Q Consensus 143 ~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~-~g~g~~ 212 (367)
++.++|++|.+.+ +++|+++|++ ||+++|+|++|+.... . .+......|++++ +|.++++ .++|++
T Consensus 227 ~ep~~~~~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~l~gG~~~lg~v 302 (460)
T 3gju_A 227 GEPILGTGGIVPPPAGYWEKIQAVLKK--YDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITI--AKGLTSAYAPLSGV 302 (460)
T ss_dssp ECSSBSTTTSBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEE--CGGGTTTSSCCEEE
T ss_pred ECCccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcccccchHhhcCCCCCeeee--ehhhcCCCCCeEEE
Confidence 8888888888765 8999999999 9999999999873211 1 1222234577655 5999764 467999
Q ss_pred eeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 213 CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++++++++.+..... ....+..+. .++.+...+++..++++.+.+++ ..++.+++.+++++.|.+.
T Consensus 303 ~~~~~i~~~~~~~~~---------~~~~~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~ 368 (460)
T 3gju_A 303 IVADRVWQVLVQGSD---------KLGSLGHGW--TYSAHPICVAAGVANLELIDEMD---LVTNAGETGAYFRAELAKA 368 (460)
T ss_dssp EEEHHHHHHHHHHHH---------HHCSCSCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHhcccc---------cccccccCC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHH
Confidence 999999888742100 000001121 44567767777777888776654 3344555555555555332
Q ss_pred --CCccccCCCccCCCceEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 293 --GLKNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 --g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.....-. ..+.++.+.+.+... ..++.+.|.++ ||.++++. .++++||++....+.+++
T Consensus 369 l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~---~~~~iRi~~~~~~t~e~i 442 (460)
T 3gju_A 369 VGGHKNVGEVR--GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP---QGDILGFAPPLCLTREQA 442 (460)
T ss_dssp HTTSTTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS---SSCEEEECCCTTCCHHHH
T ss_pred HhcCCCeEEEe--eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC---CCCEEEEECCCCCCHHHH
Confidence 222221100 123356666543211 45788888765 99998754 347899996555554433
No 213
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.91 E-value=2.1e-22 Score=188.16 Aligned_cols=312 Identities=12% Similarity=0.052 Sum_probs=196.6
Q ss_pred hHHHHHHHccCCCC--C-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-----C---CCCeEEE
Q 017726 21 PDQVIRAMNRNNED--Y-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-----S---PGDRIIS 89 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-----~---~gd~vl~ 89 (367)
++++.+++.+.... + ......+...+++++++++++.+. + +++++||++|+..++..+. . ++++|++
T Consensus 67 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~ 144 (452)
T 3n5m_A 67 RKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEY-V-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMS 144 (452)
T ss_dssp CHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCE-E-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEE
T ss_pred CHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCc-e-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 56677776664332 1 112334667899999999998654 3 9999999999999998765 4 7889999
Q ss_pred EeCCcchHHHHHHHHHhCC------------ceEEEeCCCCCCC---C---------HHHHHHHHhccCCCCccEEEEEe
Q 017726 90 FLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEGA---K---------LDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~---d---------~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.|++..... ....|. .+..++....... | +++|++++++...+++++|++++
T Consensus 145 ~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep 223 (452)
T 3n5m_A 145 RYRGYHGNTMAT-MAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEP 223 (452)
T ss_dssp ETTCCCCSSHHH-HHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECS
T ss_pred ECCCcCCCCHHH-HhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 999888754221 111121 2344443221111 2 89999999721114568888888
Q ss_pred c-CCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceeeee
Q 017726 146 N-ETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 146 ~-~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
+ +| +|.+.+ +++|+++|++ ||+++|+|++|..... ..+......|++++ +|.++++ .++|++++
T Consensus 224 ~~~n-~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~--sK~l~~G~~~ig~~~~ 298 (452)
T 3n5m_A 224 IITG-GGILMAPQDYMKAVHETCQK--HGALLISDEVICGFGRTGKAFGFMNYDVKPDIITM--AKGITSAYLPLSATAV 298 (452)
T ss_dssp SBTT-TTCBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEE--CGGGGTTSSCCEEEEE
T ss_pred ccCC-CCeeeCCHHHHHHHHHHHHH--cCCEEEEecchhCCCcccccchhhhcCCCCCEEee--cccccCCCcceEEEEE
Confidence 8 89 998886 9999999999 9999999999873211 12222234677654 6888665 56899999
Q ss_pred CHHHHHHhccCC-CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 215 SPKALEASKTAK-SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 215 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
++++++.+.... ...+. .+. .++.+...+++..++++.+.+++ ..++..++.+++++.|+++
T Consensus 299 ~~~i~~~~~~~~~~~~~~-----------~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~ 362 (452)
T 3n5m_A 299 KREIYEAFKGKGEYEFFR-----------HIN--TFGGNPAACALALKNLEIIENEN---LIERSAQMGSLLLEQLKEEI 362 (452)
T ss_dssp EHHHHGGGCSSSTTCSCC-----------CCC--SSTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCCCcc-----------ccC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHH
Confidence 999988775310 00000 121 34566666677777787776643 4456677777777777764
Q ss_pred -CCccccCCCccCCCceEEEEcCCCCC---------HHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCCCCHHHH
Q 017726 293 -GLKNCTQKEEWFSDTVTAVIVPSHIN---------SSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 -g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~~~~~~~ 359 (367)
++.....-. ..+.++.+.+.+... ..++++.|.++ ||.+.++.. +..++++||++....+++++
T Consensus 363 ~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i 438 (452)
T 3n5m_A 363 GEHPLVGDIR--GKGLLVGIELVNDKETKEPIDNDKIASVVNACKEK-GLIIGRNGMTTAGYNNILTLAPPLVISSEEI 438 (452)
T ss_dssp TTCTTEEEEE--ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHT-TEECEECTTSSTTCCCEEEECCCTTCCHHHH
T ss_pred hcCCCeEEEE--EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHC-CcEEeecCcccCCCCCEEEEECCCCCCHHHH
Confidence 333222101 122344454421111 24688888755 999998643 22357899986555554443
No 214
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.91 E-value=6.4e-23 Score=190.27 Aligned_cols=306 Identities=14% Similarity=0.062 Sum_probs=195.7
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~ 95 (367)
.++++.+++.+.... +.++ ......++.++++++++ . .+.+++++||++|+..++... ...+++|++..+.|+
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~-~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yh 145 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP-S-IEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYH 145 (427)
T ss_dssp TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCC
T ss_pred CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcC
Confidence 367788877765432 2222 34677899999999987 3 346999999999999988432 234578999888887
Q ss_pred hHHHHH------HHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 96 SLLWID------QQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 96 ~~~~~~------~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+..... .....+ ..+..++.+ |++++++++++++ +++++|++++++|++|.+.+
T Consensus 146 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~~p~~~~~G~~~~~~ 219 (427)
T 3fq8_A 146 GHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENP-GEIAGVILEPIVGNSGFIVPDA 219 (427)
T ss_dssp CSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCT
T ss_pred CCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCC-CCEEEEEEcCCcCCCCCcCCCH
Confidence 632100 000000 123344432 8999999998754 46789999988899999998
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccC---c-eeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSIC---A-IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~---~-~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++|+|++|+.. . ...+......|++++ +|+++++.++|++++++++++.+.....
T Consensus 220 ~~l~~l~~l~~~--~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~--sK~~~~G~~~G~~~~~~~~~~~~~~~~~-- 293 (427)
T 3fq8_A 220 GFLEGLREITLE--HDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTL--GKIIGGGLPVGAYGGKREIMQLVAPAGP-- 293 (427)
T ss_dssp THHHHHHHHHHH--TTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEE--CGGGGTTSSCEEEEECHHHHTTBTTTSS--
T ss_pred HHHHHHHHHHHH--cCCEEEEeccccccccCcchhhHhcCCCCChhhh--hhhhhCCcceEEEEEcHHHHHhhccCCC--
Confidence 9999999999 99999999999832 1 111222234566544 5999754458999999999887764210
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS 305 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 305 (367)
.. .+. .++.+...+++..++++.+.++ +..++.+++.+++++.|+++ ++....+ ..
T Consensus 294 ~~-----------~~~--t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~ 353 (427)
T 3fq8_A 294 MY-----------QAG--TLSGNPLAMTAGIKTLELLRQP---GTYEYLDQITKRLSDGLLAIAQETGHAACGG----QV 353 (427)
T ss_dssp BC-----------CCC--TTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred cc-----------ccC--CCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE----Ee
Confidence 00 111 3456776667777777766554 34556677777777777664 2222111 23
Q ss_pred CceEEEEcCCC-CC------------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSH-IN------------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~-~~------------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.++++.+++. .. ..++.+.|.++ ||.+.++.. ..+|++.....++.+...+.|+
T Consensus 354 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~l~ 421 (427)
T 3fq8_A 354 SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF----EAGFTSLAHTEEDIDATLAAAR 421 (427)
T ss_dssp TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHHH
T ss_pred eeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC----CCEEeeCcCCHHHHHHHHHHHH
Confidence 44677776432 11 35788888755 999987542 2466654444444444444443
No 215
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.90 E-value=3.5e-22 Score=185.41 Aligned_cols=306 Identities=11% Similarity=0.011 Sum_probs=191.0
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~~~ 95 (367)
.++++.+++.+.... +.++ ..+...+++++++++++ . .+.+++++||++|+..++.... .+++.|++..+.|+
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~-~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yh 146 (429)
T 4e77_A 70 NHPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP-T-MDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYH 146 (429)
T ss_dssp TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCC
T ss_pred CCHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC-C-CCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccC
Confidence 367788888775433 1112 23667789999999987 3 3469999999999999887432 35678998888888
Q ss_pred hHHHHHH-HHHhCC-----------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 96 SLLWIDQ-QQRLNF-----------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 96 ~~~~~~~-~~~~g~-----------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+...... ....+. .+..++. .|++++++++++.. +++++|++...++.+|.+.+
T Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~~g~~~~~~ 220 (429)
T 4e77_A 147 GHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-----NDLASVRQAFEQYP-QEVACIIVEPVAGNMNCIPPLP 220 (429)
T ss_dssp C------------------CCCTTSCGGGGTTEEEECT-----TCHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCT
T ss_pred CCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-----CCHHHHHHHHHhcC-CCEEEEEECCccCCCCCcCCCH
Confidence 7542111 000111 1222222 17999999998643 35666666655566677777
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccC---ce-eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSIC---AI-DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~---~~-~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++|+|++|+.. .. ..+......|++ |++|.++++.++|++++++++++.+.....
T Consensus 221 ~~l~~l~~l~~~--~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~-- 294 (429)
T 4e77_A 221 EFLPGLRALCDE--FGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGP-- 294 (429)
T ss_dssp THHHHHHHHHHH--HTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSS--
T ss_pred HHHHHHHHHHHH--cCCEEEEeccccCcccCcchHHHhcCCCCCee--eecccccCCCCeEEEEECHHHHHHhccCCC--
Confidence 8999999999 99999999999832 11 112222235765 556999765567999999999877754210
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS 305 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 305 (367)
.. .+. .++.+...+++..++++.+.++ +..++..++.+++++.|++. ++....+ ..
T Consensus 295 ~~-----------~~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~ 354 (429)
T 4e77_A 295 VY-----------QAG--TLSGNPIAMAAGFACLTEISQV---GVYETLTELTDSLATGLRHAAKEENIPLVVN----HV 354 (429)
T ss_dssp BC-----------C----CCCCCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred cc-----------ccC--CCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----Ee
Confidence 00 011 4457777777777788876543 34556666777777777653 3322221 23
Q ss_pred CceEEEEcCCCC--------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSHI--------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~~--------------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.++++.+++.. ...++++.|.++ ||.+.++.. ..+|++.....++.+...++|+
T Consensus 355 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~ 423 (429)
T 4e77_A 355 GGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF----EAGFMSLAHSNEDIQKTVNAAR 423 (429)
T ss_dssp TTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHHH
T ss_pred eeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC----CCEEEeccCCHHHHHHHHHHHH
Confidence 456777775321 126788888765 999987642 3467764444444454444443
No 216
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.90 E-value=7.1e-23 Score=190.96 Aligned_cols=307 Identities=15% Similarity=0.170 Sum_probs=196.6
Q ss_pred hHHHH-H-HHcc---CCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---C-------
Q 017726 21 PDQVI-R-AMNR---NNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---S------- 82 (367)
Q Consensus 21 ~~~v~-~-a~~~---~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---~------- 82 (367)
++.+. + ++.+ .... +.+ ........++++.++++++....+++++++||++|+..++.... .
T Consensus 72 ~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~ 151 (449)
T 2cjg_A 72 PPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHG 151 (449)
T ss_dssp CHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccc
Confidence 66677 6 6665 3211 211 11235567899999999973333469999999999999886432 2
Q ss_pred ---C-CCeEEEEeCCcchHHHH--HH-----HHHhCC-----ceEEEeCCC--CC--------CCCHHHHHHHHhccCCC
Q 017726 83 ---P-GDRIISFLIGQFSLLWI--DQ-----QQRLNF-----NVDVVESDW--GE--------GAKLDVLASKLAADTAH 136 (367)
Q Consensus 83 ---~-gd~vl~~~~~~~~~~~~--~~-----~~~~g~-----~~~~v~~~~--~~--------~~d~e~l~~~i~~~~~~ 136 (367)
+ |++|++.++.|++.... .. ....+. ++..++.+. .. ..+++++++++++++ +
T Consensus 152 ~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~-~ 230 (449)
T 2cjg_A 152 IDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRP-H 230 (449)
T ss_dssp SCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHST-T
T ss_pred cccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcC-C
Confidence 2 88999999988875311 10 111222 455666543 11 245667999887533 4
Q ss_pred CccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCC
Q 017726 137 TIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPT 207 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~ 207 (367)
++++|++++++|++|.+.+ +++|.++|++ +|+++|+|++|+.... .++......|+++ ++|++
T Consensus 231 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l---- 302 (449)
T 2cjg_A 231 DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDE--FDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVA--FGKKT---- 302 (449)
T ss_dssp TEEEEEECSEETTTTCEECCHHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGG----
T ss_pred ceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHH--CCcEEEEeccccCCCccCcceeecccCCCceEEE--ecCcc----
Confidence 7788888877899997766 9999999999 9999999999983211 1122223467765 46988
Q ss_pred cceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Q 017726 208 GMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRL 287 (367)
Q Consensus 208 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~ 287 (367)
.+|++++++++++.+.+..... ...+. .++.+...+++..++++.+.++ ++.++..++++++++
T Consensus 303 ~iG~~~~~~~~~~~l~~~~~~~-----------~~~~~--t~~~n~~~~~aa~aal~~~~~~---~~~~~~~~~~~~l~~ 366 (449)
T 2cjg_A 303 QVCGVMAGRRVDEVADNVFAVP-----------SRLNS--TWGGNLTDMVRARRILEVIEAE---GLFERAVQHGKYLRA 366 (449)
T ss_dssp SSEEEEECGGGGGSTTCTTTST-----------TSSCC--SSSSCHHHHHHHHHHHHHHHHH---THHHHHHHHHHHHHH
T ss_pred cEEEEEECHHHhhhhhhcccCC-----------ccccc--CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHH
Confidence 3799999998876543211000 00111 3456677777777888877664 355678888999999
Q ss_pred HHHHc--CCcc-ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 288 AVEAW--GLKN-CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 288 ~L~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.|+++ +++. +.... ..+.++.+.+++..+..++++.|.+ +||.+.++- .+++|+++....+++++
T Consensus 367 ~L~~l~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g----~~~iRi~~~~~~t~e~i 434 (449)
T 2cjg_A 367 RLDELAADFPAVVLDPR--GRGLMCAFSLPTTADRDELIRQLWQ-RAVIVLPAG----ADTVRFRPPLTVSTAEI 434 (449)
T ss_dssp HHHHHHHHSTTTSEEEE--EETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHH
T ss_pred HHHHHHhhCCCceeeEe--eccEEEEEEECChHHHHHHHHHHHH-CCeEEecCC----CCEEEEECCCCCCHHHH
Confidence 99875 2332 21101 1234666777432245689999975 599998752 47899986555555443
No 217
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.90 E-value=1.4e-21 Score=174.77 Aligned_cols=312 Identities=13% Similarity=0.078 Sum_probs=210.7
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC--------CCCC---cHH-HHHHHHHHHHHHHhcCCCCceE--EecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED--------YRSP---AVP-ALTKTLLEDIKKIFKTTSGTPF--LIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~--------~~~~---~~~-~~~~~~~~~la~~~~~~~~~~v--~~~~ggt~al~ 74 (367)
+.+.++|.---+++.|++++-....+ .++| .+. .+..-++++..++||++.+++- +=.-||+.|+.
T Consensus 55 ~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~ 134 (490)
T 3ou5_A 55 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL 134 (490)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred cCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHH
Confidence 35667888888999999998875432 1222 233 3344467788999999876421 44568999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHH------HHHHhCCceEEE--eCC-CCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWID------QQQRLNFNVDVV--ESD-WGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~g~~~~~v--~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.++++|||+|+..+..+.++.... -....|.-+..+ +++ +++.+|.|++++...+ .|||+|++-.
T Consensus 135 avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~---~kPklIi~G~ 211 (490)
T 3ou5_A 135 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---FRPRLIIAGT 211 (490)
T ss_dssp HHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHH---HCCSEEEECC
T ss_pred HHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhh---cCCCeEEECC
Confidence 999999999999999888666553211 111123222333 333 3567999999999887 5789998865
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccC-----ceeeccccccceEEEecCCCcccCCCcceeeeeCHH---
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-----AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPK--- 217 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~-----~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~--- 217 (367)
-. .-...|.++++++|++ .|+++++|.+|-.| ..+.++. .+|++++|+||+|.||+| |++.++++
T Consensus 212 Sa--Y~r~id~~~~reIAd~--vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~ 284 (490)
T 3ou5_A 212 SA--YARLIDYARMREVCDE--VKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKA 284 (490)
T ss_dssp SS--CCSCCCHHHHHHHHHH--HTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCSC-EEEEEECSEEE
T ss_pred cc--CccccCHHHHHHHHhh--cccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCCc-eEEEecccccc
Confidence 43 3346799999999999 99999999999654 3344544 489999999999999997 88887763
Q ss_pred ------------HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Q 017726 218 ------------ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT 285 (367)
Q Consensus 218 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l 285 (367)
+.+++.....+ |. .+.|....+++...++........++-.++..+|++.|
T Consensus 285 ~~~k~~~~~~~~~~kkin~aVFP---------------g~--qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaL 347 (490)
T 3ou5_A 285 VDPKTGREIPYTFEDRINFAVFP---------------SL--QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAM 347 (490)
T ss_dssp ECC--CCEEECCCHHHHHHHHTT---------------TT--CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhhcCc---------------cc--cccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 22233221111 11 22377777788888888766655788889999999999
Q ss_pred HHHHHHcCCccccCCCccCCCceEEEEc-CCCCCHHHHHHHHHhhCCeEEc----cCC-CCCCCcEEEEeec
Q 017726 286 RLAVEAWGLKNCTQKEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLG----LGL-NKVAGKVFRIGHL 351 (367)
Q Consensus 286 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gv~v~----~g~-~~~~~~~iRi~~~ 351 (367)
.+.|.+.|+.+++.. ..++++.+++ +.+++..+..+.| ++.||.+- |+. .+..++.||||..
T Consensus 348 A~~L~~~G~~vvsGg---TdnHlvLvDl~~~g~tG~~ae~~L-e~agItvNkN~iP~D~sp~~~SGiRiGTp 415 (490)
T 3ou5_A 348 ADALLERGYSLVSGG---TDNHLVLVDLRPKGLDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAP 415 (490)
T ss_dssp HHHHHHTTCEEGGGS---CSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESH
T ss_pred HHHHHhCCCeeecCC---CCceEEEEeccccCCCHHHHHHHH-HHcCcEECCCCCCCCCCCCCCCeeEECCH
Confidence 999999999998743 3455677776 3467777777777 56799885 332 1233467999974
No 218
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.90 E-value=9.9e-24 Score=195.82 Aligned_cols=304 Identities=11% Similarity=0.043 Sum_probs=193.1
Q ss_pred ChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--CCCeEEEEeCCc
Q 017726 20 IPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--PGDRIISFLIGQ 94 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--~gd~vl~~~~~~ 94 (367)
.++++.+++.+.... ...+ .....+++++++++++ . .+.+++++||++|+..++..... ++++|++.++.|
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~-~-~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~y 145 (429)
T 3k28_A 70 ANDRVVEALKAVAERGTSFGAP--TEIENKLAKLVIERVP-S-IEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCY 145 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSC--CHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCC
T ss_pred CCHHHHHHHHHHHhhCcCcCCC--CHHHHHHHHHHHHhCC-C-CCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCc
Confidence 467777777764322 2222 3567789999999986 2 34699999999999998876543 667899988887
Q ss_pred chHHHHHHHHHhCC-------------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 95 FSLLWIDQQQRLNF-------------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 95 ~~~~~~~~~~~~g~-------------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
++... ......|. ++..++.+ |++++++++++.+ +++++|++..+++++|.+.+
T Consensus 146 hg~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~ 218 (429)
T 3k28_A 146 HGHGD-SLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFG-DDIACVIVEPVAGNMGVVPP 218 (429)
T ss_dssp CCSCG-GGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCC
T ss_pred CCCcH-HHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCC-CCEEEEEEcCCCCCCCcccC
Confidence 76431 11111121 22333322 7999999998543 35677888877788888888
Q ss_pred ----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC
Q 017726 156 ----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK 226 (367)
Q Consensus 156 ----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~ 226 (367)
+++|.++|++ +|+++|+|++|... .. .+......|+++ ++|.++++.++|++++++++++.+....
T Consensus 219 ~~~~l~~l~~l~~~--~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~~~~~~~~~~~~~~ 293 (429)
T 3k28_A 219 QPGFLEGLREVTEQ--NGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTC--LGKVIGGGLPVGAYGGKAEIMRQVAPSG 293 (429)
T ss_dssp CTTHHHHHHHHHHH--HTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTBTTTS
T ss_pred CHHHHHHHHHHHHH--cCCEEEEecccccc-ccCcchHHHHhCCCCceeh--hhhhhcCCCCeEEEEEcHHHHhhhccCC
Confidence 9999999999 99999999999732 11 111122356665 5699976566899999999887765321
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWF 304 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~ 304 (367)
. .. .+. .++.+...+++..++++... ++..++.+++++++++.|+++ .+.....-. .
T Consensus 294 ~--~~-----------~~~--t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~ 352 (429)
T 3k28_A 294 P--IY-----------QAG--TLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN--R 352 (429)
T ss_dssp S--BC-----------CCC--TTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE--E
T ss_pred C--cc-----------ccC--CCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE--e
Confidence 0 00 111 34566655555555555432 567778888888888888775 122211100 1
Q ss_pred CCceEEEEcCCCC-------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 305 SDTVTAVIVPSHI-------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 305 ~~~~~~~~~~~~~-------------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+.++.+.+.+.. ...++++.|.++ ||.+.++. ...+|+++....++.+...++|+
T Consensus 353 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~l~ 421 (429)
T 3k28_A 353 AGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPSQ----FEGLFLSTVHSDADIEATIAAAE 421 (429)
T ss_dssp ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST----TSCBCCCTTCCHHHHHHHHHHHH
T ss_pred eccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecCC----CCCEEEECCCCHHHHHHHHHHHH
Confidence 2345566652211 136788888755 99998752 24588875445445555555444
No 219
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.90 E-value=1.8e-22 Score=188.87 Aligned_cols=306 Identities=13% Similarity=0.097 Sum_probs=191.6
Q ss_pred hHHHHHHHccCCC----CCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--------CCCeE
Q 017726 21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--------~gd~v 87 (367)
++++.+++.+... .+. .....+...+++++++++++.+.+ .+++++||++|+..++..+.. +++.|
T Consensus 68 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~v 146 (459)
T 4a6r_A 68 RKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFD-RVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTL 146 (459)
T ss_dssp CHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4556666655321 111 112336678899999999876554 599999999999999987654 57899
Q ss_pred EEEeCCcchHHHHHHHHHhC------------CceEEEeCCC-----CCCCC--------HHHHHHHHhccCCCCccEEE
Q 017726 88 ISFLIGQFSLLWIDQQQRLN------------FNVDVVESDW-----GEGAK--------LDVLASKLAADTAHTIKAIC 142 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-----~~~~d--------~e~l~~~i~~~~~~~~~lv~ 142 (367)
++..+.|++...... ...+ ..+..++.+. +. .| ++++++++++...+++++|+
T Consensus 147 i~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi 224 (459)
T 4a6r_A 147 IGRWNGYHGSTIGGA-SLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFV 224 (459)
T ss_dssp EEETTCCCCSSHHHH-HHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred EEECCCcCCccHHHH-hhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 999998887643211 1111 1334454332 11 34 78899988753213457777
Q ss_pred EEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceee
Q 017726 143 IVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIV 212 (367)
Q Consensus 143 ~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~ 212 (367)
+..+++++|.+.+ +++|.++|++ +|+++|+|++|..... ..+......|++++ +|.++++ .++|++
T Consensus 225 ~ep~~~~~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~--sK~l~gg~~~lg~v 300 (459)
T 4a6r_A 225 GEPIQGAGGVIVPPATYWPEIERICRK--YDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTA--AKGLSSGYLPIGAV 300 (459)
T ss_dssp ECSSBTTTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSSCCEEE
T ss_pred ECCccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcccccchHhhcCCCCCeeeh--hhhhcCCCCCccce
Confidence 7777777888776 9999999999 9999999999873211 11222234677765 5888765 468999
Q ss_pred eeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHH-H
Q 017726 213 CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR-RLGKATRLAV-E 290 (367)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~-~~~~~l~~~L-~ 290 (367)
++++++++.+..... +..+. .++.+...+++..++++.+.+++ ..++.+ ++.+++++.| +
T Consensus 301 ~~~~~i~~~~~~~~~-------------~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~ 362 (459)
T 4a6r_A 301 FVGKRVAEGLIAGGD-------------FNHGF--TYSGHPVCAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRE 362 (459)
T ss_dssp EECHHHHHHHHHHCT-------------THHHH--HHCSCHHHHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHH
T ss_pred eeCHHHHHHhhcCCC-------------cccCC--CCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHH
Confidence 999999887762100 00011 23456666667777787776654 344555 5666666666 4
Q ss_pred Hc-CCccccCCCccCCCceEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 291 AW-GLKNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 291 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
.+ .+..+..-. ..+.++.+.+.+... ..++++.|.++ ||.++++ ++++||++....+.++
T Consensus 363 ~l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~~~~~~t~e~ 434 (459)
T 4a6r_A 363 TFSRFEHVDDVR--GVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRAC-----GDHIVSAPPLVMTRAE 434 (459)
T ss_dssp HHTTCTTEEEEE--EETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHH
T ss_pred HHhcCCCeEEEE--EEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecC-----CCEEEEECCCCCCHHH
Confidence 44 332222111 123355566533211 56788888765 9999875 2789999655555443
Q ss_pred H
Q 017726 359 F 359 (367)
Q Consensus 359 ~ 359 (367)
+
T Consensus 435 i 435 (459)
T 4a6r_A 435 V 435 (459)
T ss_dssp H
T ss_pred H
Confidence 3
No 220
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.90 E-value=3.2e-22 Score=186.68 Aligned_cols=308 Identities=12% Similarity=0.075 Sum_probs=188.1
Q ss_pred hHHHHHHHccCCCC--CCC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--CCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--PGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--~gd~vl~~~~~~ 94 (367)
++++.+++.+.... +.. ....+...++.++++++++....+.+++++||++|+..++..... .+++|++..+.|
T Consensus 79 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~y 158 (451)
T 3oks_A 79 APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAY 158 (451)
T ss_dssp CHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 56677776664322 211 123466778999999998765445799999999999999876442 457899999988
Q ss_pred chHHHHHHHHHhC-------------CceEEEeCCCCC-----CC--------CHHHHHHHHhcc-CCCCccEEEEEecC
Q 017726 95 FSLLWIDQQQRLN-------------FNVDVVESDWGE-----GA--------KLDVLASKLAAD-TAHTIKAICIVHNE 147 (367)
Q Consensus 95 ~~~~~~~~~~~~g-------------~~~~~v~~~~~~-----~~--------d~e~l~~~i~~~-~~~~~~lv~~~~~~ 147 (367)
++....... ..+ ..+..++.+... .. +++.+++.+++. ..+++++|++...+
T Consensus 159 hG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~ 237 (451)
T 3oks_A 159 HGRTNLTMA-LTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQ 237 (451)
T ss_dssp CCSSHHHHH-HCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSB
T ss_pred CCccHHHHH-hcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCc
Confidence 876422111 111 145666654211 01 244455555431 10244566665555
Q ss_pred CCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHH
Q 017726 148 TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA 218 (367)
Q Consensus 148 n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~ 218 (367)
+..|.+.+ +++|+++|++ ||+++|+|++|..... ..+......|++ +++|.++++.++|++++++++
T Consensus 238 ~~gG~~~~~~~~l~~l~~l~~~--~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~iG~v~~~~~~ 313 (451)
T 3oks_A 238 GEGGFIVPADGFLPTLLDWCRK--NDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAGGLPLSAVTGRAEI 313 (451)
T ss_dssp TTTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCEEEEEEHHH
T ss_pred CCCCccCCCHHHHHHHHHHHHH--cCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhCCcceEEEEECHHH
Confidence 56666665 8999999999 9999999999873221 122222346776 456999765567999999998
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcc
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKN 296 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~ 296 (367)
++.+..... +. .++.+...+++..++++.+.+++ ..++.+++.+++++.|+++ .+..
T Consensus 314 ~~~~~~~~~----------------~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~ 372 (451)
T 3oks_A 314 MDSPHVSGL----------------GG--TYGGNPIACAAALATIETIESEG---LVARAQQIEKIMKDRLGRLQAEDDR 372 (451)
T ss_dssp HTCSCTTSB----------------CC--SSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhhcCCCc----------------CC--CCCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 877653211 11 34566666677777787766653 4445566666666666653 2222
Q ss_pred ccCCCccCCCceEEEEcCC-------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 297 CTQKEEWFSDTVTAVIVPS-------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
...-. ..+.++++.+.+ .....++.+.|.++ ||.+.++-. .+..+|+++....+++++
T Consensus 373 ~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~i 437 (451)
T 3oks_A 373 IGDVR--GRGAMIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGT--YGNVVRFLPPLSIGDDLL 437 (451)
T ss_dssp EEEEE--EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECT--TSCEEEECCCTTCCHHHH
T ss_pred eEEEE--EeeEEEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCC--CCCEEEEECCCCCCHHHH
Confidence 11100 123456666521 12355788888755 999987532 246899986666555444
No 221
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.89 E-value=5e-22 Score=185.41 Aligned_cols=304 Identities=13% Similarity=0.079 Sum_probs=184.1
Q ss_pred hHHHHHHHccCCC--CCC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNE--DYR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~--~~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~~ 94 (367)
++++.+++.+... .+. .....+...+++++++++++.+..+.+++++||++|+..++.... ..++.|++..+.|
T Consensus 82 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~y 161 (453)
T 4ffc_A 82 HPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAY 161 (453)
T ss_dssp CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCcc
Confidence 5666666665421 111 122346677999999999986544579999999999999986543 2457899999988
Q ss_pred chHHHHHHHHHhC-------------CceEEEeCCCC----CCCC--------HHHHHHHHhccCCCCccEEEEEecCCC
Q 017726 95 FSLLWIDQQQRLN-------------FNVDVVESDWG----EGAK--------LDVLASKLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 95 ~~~~~~~~~~~~g-------------~~~~~v~~~~~----~~~d--------~e~l~~~i~~~~~~~~~lv~~~~~~n~ 149 (367)
++...... ...+ ..+..++.+.. ...+ ++.+++.+.. +...++++.|.|+
T Consensus 162 hg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~----~~~aavi~ep~~~ 236 (453)
T 4ffc_A 162 HGRTNLTM-ALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA----QSLAAIIIEPIQG 236 (453)
T ss_dssp CCSSHHHH-HHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG----GGEEEEEECSSBT
T ss_pred CCcchHHH-hhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC----CCEEEEEEcCCCC
Confidence 87642211 1111 14556665421 1222 2445554432 2344444555555
Q ss_pred c-ccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHH
Q 017726 150 T-GVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL 219 (367)
Q Consensus 150 t-G~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~ 219 (367)
+ |.+.+ +++|.++|++ ||+++|+|++|..... ..+......|++++ +|.++++.++|+++++++++
T Consensus 237 ~gG~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~~i~ 312 (453)
T 4ffc_A 237 EGGFIVPAPGFLATLTAWASE--NGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTM--AKGIAGGMPLSAVTGRAELM 312 (453)
T ss_dssp TTTSBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHH--cCCEEEEecCccCCCcccccchhhhcCCCcchHhh--hhhhcCCcCeEEEEECHHHH
Confidence 5 56655 8999999999 9999999999873211 11222224566654 69987655689999999988
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNC 297 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 297 (367)
+.+..... +. .++.+...+++..++++.+.+++ ..++.+++.+++++.|+++ .+...
T Consensus 313 ~~~~~~~~----------------~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~ 371 (453)
T 4ffc_A 313 DAVYAGGL----------------GG--TYGGNPVTCAAAVAALGVMRELD---LPARARAIEASVTSRLSALAEEVDII 371 (453)
T ss_dssp TTSCTTSS----------------CC--SSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hhhcccCc----------------CC--CCCcCHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 77654311 11 34566666677777777766554 3445555666666666553 22221
Q ss_pred cCCCccCCCceEEEEcCC-------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPS-------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..-. ..+.++++.+.+ .....++.+.|.++ ||.+.++-. .+..+|+++....+++++
T Consensus 372 ~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~i 435 (453)
T 4ffc_A 372 GEVR--GRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGT--FGNVIRLLPPLVIGDDLL 435 (453)
T ss_dssp EEEE--EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECT--TSCEEEECCCTTCCHHHH
T ss_pred EEEE--eeceEEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCC--CCCEEEEECCCCCCHHHH
Confidence 1100 123456666522 11245788888755 999987532 246899986655555444
No 222
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.89 E-value=2.3e-22 Score=186.91 Aligned_cols=306 Identities=15% Similarity=0.073 Sum_probs=197.9
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc--cCCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~--~~~~gd~vl~~~~~~~ 95 (367)
.++.+.+++.+.... +.++ ..+...++++.++++++ . .+.+++++||++|+..++.. .+.++++|++.++.|+
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-~-~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yh 149 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGA-PGEAEVLLAEKILGYVK-R-GGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYH 149 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHHC-T-TCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCC
T ss_pred CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcC
Confidence 467788887775432 1221 23567789999999985 2 34699999999999998876 1345678888888877
Q ss_pred hHHHHHH--H----------HHhCC------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 96 SLLWIDQ--Q----------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 96 ~~~~~~~--~----------~~~g~------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+...... . ...|+ ++..++. .|++++++++++.. +++++|++++.++++|.+.|
T Consensus 150 g~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~ 223 (434)
T 2epj_A 150 GSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEYG-DRIAGVIVEPVIANAGVIPPRR 223 (434)
T ss_dssp CSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHG-GGEEEEEECSSBCSSSCBCCCH
T ss_pred CCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhCC-CCEEEEEEeCCcCCCCccCCCH
Confidence 6421000 0 01232 3555554 28999999997532 35677777777788999988
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCce--e--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~--~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++|+|++|+.... . .+......|++ |++|+++++..+|++++++++++.+.... .
T Consensus 224 ~~l~~l~~l~~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~--~ 297 (434)
T 2epj_A 224 EFLAALQRLSRE--SGALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVMSLLTPQG--K 297 (434)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTS--S
T ss_pred HHHHHHHHHHHH--cCCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHHHhhccCC--C
Confidence 9999999999 9999999999983211 0 11112246775 55799976445799999999877665310 0
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS 305 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 305 (367)
.. .+. .++.+...+++..++++.+.+. +..++..++++++++.|+++ ++....+ ..
T Consensus 298 ~~-----------~~~--t~~~~~~~~aa~~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~ 357 (434)
T 2epj_A 298 VF-----------NAG--TFNAHPITMAAGLATLKALEEE---PVYSVSREAAKALEEAASEVLDRTGLPYTIN----RV 357 (434)
T ss_dssp BC-----------CCC--TTTTCHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE----EE
T ss_pred cc-----------cCC--CCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE----Ee
Confidence 00 011 3456676777777888877664 34567777888888888774 5432111 13
Q ss_pred CceEEEEcCCC-------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSH-------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~-------------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.++++.+++. .+..++.+.|.+ +||.+.++.. ..+|+++....++.+...++|+
T Consensus 358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~ 425 (434)
T 2epj_A 358 ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL----EAVFTGLPHQGEALEIAVEGLR 425 (434)
T ss_dssp TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT----SCEECCTTCSHHHHHHHHHHHH
T ss_pred eeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC----CcEEEeccCCHHHHHHHHHHHH
Confidence 34677877531 124578888875 4999987642 2477764434444444444443
No 223
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.89 E-value=2.7e-21 Score=181.37 Aligned_cols=310 Identities=15% Similarity=0.123 Sum_probs=198.7
Q ss_pred hHHHHHHHccCCCC--CC-C-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEE
Q 017726 21 PDQVIRAMNRNNED--YR-S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~-~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl 88 (367)
++.+.+++.+.... +. . ....+...++.++++++++...+ .+++++||++|+..++.... ..+++|+
T Consensus 72 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi 150 (476)
T 3i5t_A 72 RREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLN-RIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRII 150 (476)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcC-EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 56677776664321 11 1 22346677899999998865443 59999999999999998754 3367899
Q ss_pred EEeCCcchHHHHHHHHHhCC------------ceEEEeCCCC--C-CCC--------HHHHHHHHhccCCCCccEEEEEe
Q 017726 89 SFLIGQFSLLWIDQQQRLNF------------NVDVVESDWG--E-GAK--------LDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~--~-~~d--------~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
+.++.|++..... ....+. .+..++.+.. . ..| +++|++++++...+++++|+++.
T Consensus 151 ~~~~~yHg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep 229 (476)
T 3i5t_A 151 VRYDGYHGSTALT-AACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEP 229 (476)
T ss_dssp EETTCCCCSSHHH-HHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS
T ss_pred EEcCCcCcCChhh-ccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9999888764321 111221 2334443221 1 112 78899988753213578889999
Q ss_pred cCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce---e--ec-cccccceEEEecCCCcccCC-Ccceeeee
Q 017726 146 NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FR-MDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 146 ~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~-~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
+++++|.+.+ +++|+++|++ +|+++|+|++|+.... . +. ......|++++ +|.++++ .++|++++
T Consensus 230 ~~~~~G~~~~~~~~L~~l~~lc~~--~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~--sK~l~~G~~plg~v~~ 305 (476)
T 3i5t_A 230 ILASGGVIIPPAGYHARFKAICEK--HDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITF--AKGVTSGYVPLGGLAI 305 (476)
T ss_dssp SBTTTTSBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEE--CGGGGTTSSCCEEEEE
T ss_pred ccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEEecccCCccccCceeeecccCCCcchhhh--hhhhcCCCcCeEEEEE
Confidence 8899997665 8999999999 9999999999873211 1 12 22334677765 5988765 56799999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G 293 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g 293 (367)
++++++.+......... +..+. .++.+...+++..++++.+.++ .+.++..++.+++++.|+++ .
T Consensus 306 ~~~i~~~~~~~~~~~~~---------~~~~~--t~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~ 371 (476)
T 3i5t_A 306 SEAVLARISGENAKGSW---------FTNGY--TYSNQPVACAAALANIELMERE---GIVDQAREMADYFAAALASLRD 371 (476)
T ss_dssp CHHHHHTTSGGGCTTCE---------ECCCC--TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHhcCCccccc---------ccccC--CCCcCHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 99998877642100000 01122 3456777777777888877664 35667788888999998875 3
Q ss_pred CccccCCCccCCCceEEEEcCCCC-----------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHI-----------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
++.+..-. ..+.++.+.+.+.. ...++++.|.++ ||.+++. ++++||++....++++
T Consensus 372 ~~~v~~v~--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~p~l~~t~e~ 439 (476)
T 3i5t_A 372 LPGVAETR--SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GLIVRPL-----GDLCVISPPLIISRAQ 439 (476)
T ss_dssp STTEEEEE--EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHH
T ss_pred CCCeEEEE--ecCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CCEEEec-----CCEEEEECCCCCCHHH
Confidence 33222111 12335566664321 145688888765 9999872 3789999655555443
No 224
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.89 E-value=5.7e-22 Score=185.64 Aligned_cols=306 Identities=12% Similarity=0.055 Sum_probs=197.3
Q ss_pred hHHHHHHHccCCC----CCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--------CCCeE
Q 017726 21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--------~gd~v 87 (367)
++.+.+++.+... .+. .....+...++.++++++++.+. +.+++++||++|+..++..... ++++|
T Consensus 73 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~-~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~i 151 (472)
T 3hmu_A 73 RDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL-NHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVI 151 (472)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 5666666665422 111 11234567789999999987544 3699999999999999987653 46789
Q ss_pred EEEeCCcchHHHHHHHHHhCC-----------ceEEEeCCCCCC----CC--------HHHHHHHHhccCCCCccEEEEE
Q 017726 88 ISFLIGQFSLLWIDQQQRLNF-----------NVDVVESDWGEG----AK--------LDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~~----~d--------~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
++.++.|++..... ....+. .+..++.+.... .| ++++++++++...+++++|++.
T Consensus 152 i~~~~~yHg~t~~~-~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~e 230 (472)
T 3hmu_A 152 ISRKNAYHGSTVAS-SALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAE 230 (472)
T ss_dssp EEETTCCCCSSHHH-HHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEEC
T ss_pred EEEcCcCCCccHHh-hhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEc
Confidence 99999888754221 111121 344555432111 23 7888888874321356788888
Q ss_pred ecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceeeee
Q 017726 145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 145 ~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
.+++++|.+.+ +++|+++|++ +|+++|+||+|..... .........|++++ +|.++|+ ..+|++++
T Consensus 231 pv~~~gG~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~--sK~l~gg~~plG~v~~ 306 (472)
T 3hmu_A 231 PVQGAGGVIVAPDSYWPEIQRICDK--YDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTI--AKGLSSGYAPIGGSIV 306 (472)
T ss_dssp SSBSTTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEE--CGGGTTTSSCCEEEEE
T ss_pred CccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEEccccCCcccCccchhHHhCCCCceeee--chhhhcCCcceEEEEE
Confidence 88888998887 9999999999 9999999999873321 11222234678765 5988765 46799999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHc-
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR-RLGKATRLAVEAW- 292 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~-~~~~~l~~~L~~~- 292 (367)
++++++.+... . +..+. .++.+...+++..++++.+.+++ ..++.. ++.+++++.|+++
T Consensus 307 ~~~i~~~~~~~---~-----------~~~~~--t~~~np~a~aAa~aaL~~~~~~~---~~~~~~~~~~~~l~~~L~~l~ 367 (472)
T 3hmu_A 307 CDEVAHVIGKD---E-----------FNHGY--TYSGHPVAAAVALENLRILEEEN---ILDHVRNVAAPYLKEKWEALT 367 (472)
T ss_dssp EHHHHHHHTTS---C-----------BCCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHTHHHHHHHHHHGGG
T ss_pred CHHHHHhcccC---C-----------ccccC--CCCCCHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 99998887321 0 01121 34566767777777888776653 455677 7888888888775
Q ss_pred CCccccCCCccCCCceEEEEcCCCCC------------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHIN------------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.++.+..-. ..+.++.+.+.+... ..++++.|.++ ||.++++ ++++||++....+++++
T Consensus 368 ~~~~v~~vr--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~p~~~~t~e~i 438 (472)
T 3hmu_A 368 DHPLVGEAK--IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN-NLIMRHV-----GDRMIISPPLVITPAEI 438 (472)
T ss_dssp GSTTEEEEE--EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-TBCCEEE-----TTEEEECCCTTCCHHHH
T ss_pred cCCCeEEEE--ecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC-CcEEEec-----CCEEEEECCCCCCHHHH
Confidence 333222111 123355666632210 45788888765 9998874 27899996555554443
No 225
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.89 E-value=1.3e-21 Score=182.77 Aligned_cols=305 Identities=15% Similarity=0.040 Sum_probs=185.3
Q ss_pred ChHHHHHHHccCCCCCCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc---cCCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNEDYRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN---TLSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~---~~~~gd~vl~~~~~~~ 95 (367)
.++.+.+++.+....... ....+...++.+++++.++ . .+.+++++||++|+..++.. +.. ++.|++.++.|+
T Consensus 74 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yh 150 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYH 150 (453)
T ss_dssp TCHHHHHHHHHHHTTTCSSCSSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC---
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcC
Confidence 567788887775432111 1233566778888887775 3 34699999999999998886 444 468888888777
Q ss_pred hHHHHHH--H-------HHhCC------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----H
Q 017726 96 SLLWIDQ--Q-------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----L 156 (367)
Q Consensus 96 ~~~~~~~--~-------~~~g~------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~ 156 (367)
+...... . ...|+ .+..++. .|++++++++++.. +++++|++++.+|++|.+.| +
T Consensus 151 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~tG~~~~~~~~l 224 (453)
T 2cy8_A 151 GWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHG-SDIAAFIAEPVGSHFGVTPVSDSFL 224 (453)
T ss_dssp -------------------------CGGGEEEECT-----TCHHHHHHHHHHHG-GGEEEEEECSSEHHHHTEECCHHHH
T ss_pred CCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcC-CCEEEEEECCCCCCCCCcCCCHHHH
Confidence 6532110 1 01233 2333432 38999999998532 35677776666678998887 9
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
++|.++|++ ||+++|+|++|+.... ..+......|++ |++|+++++.++|++++++++++.+.......
T Consensus 225 ~~l~~l~~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~--- 297 (453)
T 2cy8_A 225 REGAELARQ--YGALFILDEVISGFRVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRK--- 297 (453)
T ss_dssp HHHHHHHHH--TTCEEEEECTTTTTTTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC------
T ss_pred HHHHHHHHH--cCCEEEEecCccccccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHhccccCCC---
Confidence 999999999 9999999999983211 011112245766 56799976556899999999887665410000
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH-HHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCc
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-IFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDT 307 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 307 (367)
...+. .++.+...+++..++++. + .+ +..++..++++++++.|+++ ++....+ ..+.
T Consensus 298 --------~~~~~--t~~~n~~~~aa~~aal~~~~-~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~ 359 (453)
T 2cy8_A 298 --------VLHQG--TFTGNPITAAAAIAAIDTIL-ED---DVCAKINDLGQFAREAMNHLFARKGLNWLAY----GRFS 359 (453)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHH-HT---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE----CCTT
T ss_pred --------ceeCC--CCCCCHHHHHHHHHHHHHHh-hh---hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE----Eeee
Confidence 00111 335666666777778877 6 43 34567788888888888764 3322111 2345
Q ss_pred eEEEEcCC-----C--------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 308 VTAVIVPS-----H--------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 308 ~~~~~~~~-----~--------------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++++.+++ . .+..++++.|.++ ||.+.++ ..+|+++....++.+...++|+
T Consensus 360 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~------~~~~l~~~~t~~~i~~~l~~l~ 429 (453)
T 2cy8_A 360 GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDIGGR------GSVFLSAQHEREHVEHLVTTFD 429 (453)
T ss_dssp EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEECBTT------TEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEEeCC------CCEEeeccCCHHHHHHHHHHHH
Confidence 77888753 1 1146788888764 9998542 2377764333344444444443
No 226
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.88 E-value=3.3e-21 Score=176.61 Aligned_cols=315 Identities=11% Similarity=-0.037 Sum_probs=193.1
Q ss_pred CCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh-cCC--CC-ceEEecCChhHHHHHHHH----ccCCCCC
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF-KTT--SG-TPFLIPTTGTGAWESALT----NTLSPGD 85 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~-~~~--~~-~~v~~~~ggt~al~~~~~----~~~~~gd 85 (367)
|.+++.+.|.+|....... ...|.+..+..++|+.+++++ |.. .. ...+-|.|||+|+..++. .+.+|||
T Consensus 59 g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd 138 (420)
T 4h51_A 59 GRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETT 138 (420)
T ss_dssp SCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTS
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCC
Confidence 3556778888876543222 223444566778999998875 322 11 223557888888876553 4568999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCce-EEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNV-DVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV 159 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~-~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i 159 (367)
.|++++|.|..+. .+.+..|.+. ...+.. ..+.+|.+.+.+.+...+ +++++++++.||||||..++ +++|
T Consensus 139 ~V~ip~P~w~~y~--~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~~vll~~~p~NPtG~~~~~~~~~~i 215 (420)
T 4h51_A 139 PIYLSDPTWPNHY--GVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAP-DGSVFILHQCAHNPTGVDPSQEQWNEI 215 (420)
T ss_dssp CEEEEESCCTHHH--HHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSC-SSCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred EEEEecCCchhHH--HHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccC-CCcEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 9999999777654 4567788764 343332 345678999888887655 67888899999999999986 6678
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee-e--c-------cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCC
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID-F--R-------MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKS 227 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~-~--~-------~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~ 227 (367)
.++|++ +++++++|++|...... . + ......-+++.|+||.++ .+| +|++++..+..+......
T Consensus 216 ~~~~~~--~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RvG~~~~~~~~~~~~~~~~- 291 (420)
T 4h51_A 216 ASLMLA--KHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG-LYSERAGTLSLLLKDKTKRADVK- 291 (420)
T ss_dssp HHHHHH--HTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSCHHHHHHHH-
T ss_pred HHHHHh--cCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc-cccCceEEEEecccCHHHHHHHH-
Confidence 888888 99999999998654321 0 0 111123588889999884 555 698887655433322110
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH--H-H--HhChHHHHHHHHHHHHHHHHHHHHcCC----cccc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--I-F--EEGLENVIERHRRLGKATRLAVEAWGL----KNCT 298 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~--~-~--~~g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~ 298 (367)
.......... ...++..+.......+.. + . +..++.+++++.+.++.+.+.|++.|. ..+.
T Consensus 292 --------~~l~~~~r~~--~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~ 361 (420)
T 4h51_A 292 --------SVMDSLIREE--YTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVI 361 (420)
T ss_dssp --------HHHHHHHHTT--TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH
T ss_pred --------HHHHHhhhcc--cCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeec
Confidence 0001111111 113444333333333321 1 1 112678889999999999999999753 2233
Q ss_pred CCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC-CHHHHHHhhhh
Q 017726 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL-NEVMFNFQLLF 365 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~-~~~~~~~~~l~ 365 (367)
+ ..+.+.+ + +++. +.++.|. +++|++.++. |||+.+-. +..+...++|.
T Consensus 362 ~----q~GmF~~--~--gls~-e~v~~L~-e~~Vy~~~~g--------Ris~Agl~~~ni~~~a~aI~ 411 (420)
T 4h51_A 362 N----QIGMFSF--L--GLSK-AQCEYCQ-NHNIFITVSG--------RANMAGLTHETALMLAQTIN 411 (420)
T ss_dssp H----CCSSEEE--C--CCCH-HHHHHHH-HTTEECCTTC--------EEEGGGCCHHHHHHHHHHHH
T ss_pred C----CCceEEe--c--CcCH-HHHHHHH-hCCEEEcCCC--------EEEeccCCHHHHHHHHHHHH
Confidence 3 3443332 2 3454 4557774 6699887531 99976633 33444444443
No 227
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.88 E-value=3.7e-21 Score=185.51 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-C
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-E 119 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~ 119 (367)
.....++++.+|+++|.+. .+++++|++.|+..++.+++++||.|++..+.|.|.. ..+...|++++.++.+.+ +
T Consensus 194 ~g~i~eaE~~lA~~fGa~~--a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~--~~l~lsGa~pv~v~~~~~~~ 269 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNADR--SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLT--HLMMMSDVTPIYFRPTRNAY 269 (715)
T ss_dssp BTHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHH--HHHHHSCCEEEEECCCBCTT
T ss_pred cHHHHHHHHHHHHHhCCCC--ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHH--HHHHHcCCEEEEEecccccc
Confidence 3557899999999999875 4566666679999999999999999999999998865 346788999999886532 2
Q ss_pred C----C-----CHHHHHHHHhccCC-CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce--e-e-
Q 017726 120 G----A-----KLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI--D-F- 185 (367)
Q Consensus 120 ~----~-----d~e~l~~~i~~~~~-~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~--~-~- 185 (367)
. + |++++++++++++. ++++++++++| |++|.+.|+++|.++|++ ++ +++|++|+.+.. + .
T Consensus 270 gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~--~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDV--KS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp CCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCC--SE--EEEECTTCTTGGGSGGGT
T ss_pred ccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCc--Cc--EEEccccccccccCCccc
Confidence 2 3 89999999987531 23458999999 999999999999999987 63 789999986531 1 1
Q ss_pred --cccccc--ceEE---EecCCCcccCCCcceeeeeCHHHH-HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHH
Q 017726 186 --RMDEWG--IDVA---LTGSQKALSLPTGMGIVCASPKAL-EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY 257 (367)
Q Consensus 186 --~~~~~~--~d~~---~~s~~K~~~g~~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (367)
.....+ +|++ +.|+||+++|+.+.|++.++++.. +++.. ....+ ...+++...++
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~------------~~~~~-----~STSpsy~~~A 407 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNE------------AYMMH-----TTTSPHYGIVA 407 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHH------------HHHHT-----SCSSCCHHHHH
T ss_pred cccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHH------------HHHhh-----cCCCchHHHHH
Confidence 111112 5655 899999998887779998876521 11110 00111 13368899999
Q ss_pred HHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHc
Q 017726 258 GLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 258 al~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++.++++.+.. .| ++++++..++++++++.|+++
T Consensus 408 sldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i 442 (715)
T 3n75_A 408 STETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRL 442 (715)
T ss_dssp HHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHh
Confidence 99999998874 44 557889999999999999886
No 228
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.88 E-value=9.6e-22 Score=182.17 Aligned_cols=306 Identities=14% Similarity=0.032 Sum_probs=195.0
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc--cCCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~--~~~~gd~vl~~~~~~~ 95 (367)
.++.+.+++.+.... +.++ ..+...++++.++++++ . .+.+++++||++|+..++.. .+.+++.|++.++.|+
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yh 145 (424)
T 2e7u_A 69 AHPKVLARVRETLERGLTFGA-PSPLEVALAKKVKRAYP-F-VDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYH 145 (424)
T ss_dssp TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHCT-T-CCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCC
T ss_pred CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcC
Confidence 467788887765432 2221 23567789999999986 3 34699999999999998875 2334578999988887
Q ss_pred hHHHHHH--H----------HHhCC------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 96 SLLWIDQ--Q----------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 96 ~~~~~~~--~----------~~~g~------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+...... + ...|+ ++..++. .|++++++++++.. +++++|++++.++++|.+.|
T Consensus 146 g~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~ 219 (424)
T 2e7u_A 146 GHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRG-EEIAAIIFEPVVGNAGVLVPTE 219 (424)
T ss_dssp CCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCH
T ss_pred CCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCC-CCEEEEEEeCCCCCCCCcCCCH
Confidence 6421100 0 01122 3444543 38999999987432 24566655544455898887
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCce--e--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~--~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++ ++ +|+++|+|++|+.... . .+......|++ |++|+++++..+|++++++++++.+.... .
T Consensus 220 ~~l~~l~~l-~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~--~ 292 (424)
T 2e7u_A 220 DFLKALHEA-KA--YGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIMEKVAPLG--P 292 (424)
T ss_dssp HHHHHHHHG-GG--GTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHHTTBTTTS--S
T ss_pred HHHHHHHHH-HH--cCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHHhhhcccC--C
Confidence 9999999 99 9999999999983211 0 11112235765 66799976545799999999887765411 0
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS 305 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 305 (367)
.. .+. .++.+...+++..++++.+.+ .++..++..++++++++.|+++ ++....+ ..
T Consensus 293 ~~-----------~~~--t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~ 353 (424)
T 2e7u_A 293 VY-----------QAG--TLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVN----RV 353 (424)
T ss_dssp BC-----------CCC--TTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred cc-----------cCC--CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----ee
Confidence 00 011 335666667777778887765 2456778888888999888774 4322111 12
Q ss_pred CceEEEEcCCC-------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSH-------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~-------------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.++++.+++. .+..++.+.|.+ +||.+.++.. ..+|+++....++.+...++|+
T Consensus 354 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----~~~~~~~~~t~~~i~~~l~~l~ 421 (424)
T 2e7u_A 354 GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSNF----EAAFLSVAHREEDVEKTLEALR 421 (424)
T ss_dssp TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSSS----SCEECCTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccCC----CceEeeccCCHHHHHHHHHHHH
Confidence 34778887531 124578888875 5999987642 2477764444444455555554
No 229
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.83 E-value=9.2e-20 Score=166.04 Aligned_cols=260 Identities=13% Similarity=0.083 Sum_probs=174.1
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC----CC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----PG 84 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~----~g 84 (367)
+.+.+.+|. .+...+++. +.....++......+++..++.+++|.+.....++++|+|++.++++.+.+. ++
T Consensus 69 r~~g~~hg~-~~~~d~l~~---~~~~~~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~ 144 (450)
T 3bc8_A 69 RHYRFIHGI-GRSGDISAV---QPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKA 144 (450)
T ss_dssp HTTTCCSCB-CC----------CCSBHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTC
T ss_pred Cccceecch-hHHHHHHHh---CccccCCcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCC
Confidence 345566666 333333333 1111123334567788999999999999776678889998555444433332 37
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeC---CCCCCCCHHHHHHHHhccCCCCccEEEEEecC-CCccccccHHHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWGEGAKLDVLASKLAADTAHTIKAICIVHNE-TATGVTNNLSKVR 160 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~-n~tG~~~~~~~i~ 160 (367)
+.|+++...|.|. .+.+...|+.++.++. +..+.+|++.++++|++++ ...+++++.+++ +.+|.+.|+++|.
T Consensus 145 ~~viv~r~aHkSv--~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~-~~~~~~Vv~t~t~~g~g~~ddl~~Ia 221 (450)
T 3bc8_A 145 KYIIWPRIDQKSC--FKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG-PEHILCLHSTTACFAPRVPDRLEELA 221 (450)
T ss_dssp CEEEEECCCCHHH--HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC-GGGEEEEEEESSCCTTBCCCCHHHHH
T ss_pred CEEEEECCcHHHH--HHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcC-CCCEEEEEEECCcCCCceecCHHHHH
Confidence 8999998877774 3678889999888865 4456899999999998753 123455555554 3456889999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceee---c--ccc-ccceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeec
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDF---R--MDE-WGIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~---~--~~~-~~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~ 233 (367)
++|++ +|+++++|+||+...... . ... .++|+++.|+|||+..+.|.+++.+ +++.++++.... .
T Consensus 222 ~ia~~--~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~-----~- 293 (450)
T 3bc8_A 222 VICAN--YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMY-----P- 293 (450)
T ss_dssp HHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHS-----C-
T ss_pred HHHHH--CCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHh-----h-
Confidence 99999 999999999998643221 1 111 2689999999999999988888887 555555543210 0
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCcccc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCT 298 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 298 (367)
++ .+.+.. +.++.++..+..+|+++..++..++++++++.|+++ |+.+..
T Consensus 294 ----------g~---~s~Sps--L~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~ 347 (450)
T 3bc8_A 294 ----------GR---ASASPS--LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ 347 (450)
T ss_dssp ----------SC---BCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC
T ss_pred ----------cC---CcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC
Confidence 11 011211 445556555566678888888899999999999774 666665
No 230
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.81 E-value=1.6e-18 Score=162.37 Aligned_cols=300 Identities=14% Similarity=0.168 Sum_probs=182.8
Q ss_pred ChHHHHHHHccCCCC----CC-CCcHHHHHHHHHHHHHH----HhcCCCCceEEecCChhHHHHHHHHccC--------C
Q 017726 20 IPDQVIRAMNRNNED----YR-SPAVPALTKTLLEDIKK----IFKTTSGTPFLIPTTGTGAWESALTNTL--------S 82 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~-~~~~~~~~~~~~~~la~----~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~ 82 (367)
-++++.+++.+.... +. .+.. ....++++.+++ +++.. .+.++|++||++|+..++.... .
T Consensus 80 ~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~~-~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~ 157 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENAFKTIFMWYRSKERG 157 (472)
T ss_dssp TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCCC-cCEEEEeCCchhHHHHHHHHHHHHhhhhccC
Confidence 478889998885321 11 1110 111345555444 44322 3469999999999999987642 1
Q ss_pred -----------------CC---CeEEEEeCCcchHHHHHHHHHh--------CCce---EEEeCCC-CC-----------
Q 017726 83 -----------------PG---DRIISFLIGQFSLLWIDQQQRL--------NFNV---DVVESDW-GE----------- 119 (367)
Q Consensus 83 -----------------~g---d~vl~~~~~~~~~~~~~~~~~~--------g~~~---~~v~~~~-~~----------- 119 (367)
|| ++|++.++.|++.... ..... +... ..++.+. ..
T Consensus 158 ~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 236 (472)
T 1ohv_A 158 QSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG-CLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQ 236 (472)
T ss_dssp TCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHH-HHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHH
T ss_pred cccccccccccccccccccCCCCeEEEECCCcccccHH-HHhcCCCccccccCCCCCCCcccCCCcccCccccccccchh
Confidence 45 8999999988876421 11112 2211 1223221 00
Q ss_pred --CCCHHHHHHHHhccCC--CCccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce--eeccc
Q 017726 120 --GAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--DFRMD 188 (367)
Q Consensus 120 --~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~--~~~~~ 188 (367)
..|+++|+++++++.. .++++|++.+.+|++|.+.| +++|.++|++ +|+++|+|++|+ ++.. .+...
T Consensus 237 ~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~--~g~lli~DEv~~g~g~~g~~~~~~ 314 (472)
T 1ohv_A 237 EEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK--HGCAFLVDEVQTGGGSTGKFWAHE 314 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHH--hCCEEEEeCcccCCCCCCCchhcc
Confidence 1267899999875210 16789998888899998877 9999999999 999999999997 3321 12333
Q ss_pred ccc----ceEEEecCCCc-ccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHH
Q 017726 189 EWG----IDVALTGSQKA-LSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAAL 263 (367)
Q Consensus 189 ~~~----~d~~~~s~~K~-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al 263 (367)
..+ +|++++ +|+ ++ | |+++ ++++. .+... ..+. .++.+...+++..+++
T Consensus 315 ~~gv~~~~Di~t~--sK~~l~---G-G~~~-~~~~~-~~~~~----------------~~~~--T~~~~~~~~aaa~aal 368 (472)
T 1ohv_A 315 HWGLDDPADVMTF--SKKMMT---G-GFFH-KEEFR-PNAPY----------------RIFN--TWLGDPSKNLLLAEVI 368 (472)
T ss_dssp GGCCSSCCSEEEE--CGGGSS---E-EEEE-CGGGS-CSSSS----------------SSCC--SSSSCHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEE--cccccc---C-CccC-chhhc-ccccc----------------cccC--ccCccHHHHHHHHHHH
Confidence 333 677654 598 43 3 6665 55531 11110 0111 2345666667777888
Q ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcc-ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC
Q 017726 264 DLIFEEGLENVIERHRRLGKATRLAVEAW--GLKN-CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK 340 (367)
Q Consensus 264 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~ 340 (367)
+.+.+.+ +.++..++++++++.|+++ +++. +..-.. . +.++.+.+++..+..++++.|.+ +||.+.++
T Consensus 369 ~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~-~-g~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~--- 439 (472)
T 1ohv_A 369 NIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-R-GTFCSFDTPDESIRNKLISIARN-KGVMLGGC--- 439 (472)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-E-TTEEEEECSSHHHHHHHHHHHHH-TTEECEEE---
T ss_pred HHHHhCC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC-C-ceEEEEEeCChhHHHHHHHHHHH-CCeEEecC---
Confidence 8877653 4567888899999998875 3431 211011 2 34666776432235678899976 49998874
Q ss_pred CCCcEEEEeecCCCCHHHHH
Q 017726 341 VAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 341 ~~~~~iRi~~~~~~~~~~~~ 360 (367)
...++|+++....+++++.
T Consensus 440 -g~~~iRi~~~~~~t~e~i~ 458 (472)
T 1ohv_A 440 -GDKSIRFRPTLVFRDHHAH 458 (472)
T ss_dssp -TTTEEEECCCTTCCHHHHH
T ss_pred -CCCEEEEECCCCCCHHHHH
Confidence 1468999776666555443
No 231
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.69 E-value=2e-21 Score=180.04 Aligned_cols=307 Identities=15% Similarity=0.038 Sum_probs=193.3
Q ss_pred hHHHHHHHccCCCCCCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNEDYRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~ 97 (367)
++++.+++.+........ ...+...++.++|+++++ . .+.+++++||++|+..++... ...+++|++.+..|++.
T Consensus 118 ~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~ 195 (465)
T 2yky_A 118 HPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGG 195 (465)
Confidence 677888887765442211 234667789999999985 2 235899999999999998763 24568899999988876
Q ss_pred HHHHHH--HHhCC--ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCC
Q 017726 98 LWIDQQ--QRLNF--NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHP 169 (367)
Q Consensus 98 ~~~~~~--~~~g~--~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~ 169 (367)
...... ...|+ .+..++. .|+++++++++++. +++++|++...++++|.+.| +++|+++|++ +|
T Consensus 196 ~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~-~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~--~g 267 (465)
T 2yky_A 196 LLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHG-HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASR--CG 267 (465)
Confidence 432111 12233 2223332 27899999987543 46789988877777998877 8999999999 99
Q ss_pred cEEEEeeeeccCcee----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCC
Q 017726 170 ALFLVDGVSSICAID----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (367)
+++|+|++++ +... .+......|++ +++|+++++..+|++++++++++.+........+ ..+
T Consensus 268 ~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~----------~~~- 333 (465)
T 2yky_A 268 ALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFA----------HAG- 333 (465)
Confidence 9999999998 5211 11111235654 6789997654579999999998877641000000 112
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCC-CC-----
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPS-HI----- 317 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~-~~----- 317 (367)
.++.+...+++..++++.+.++ ...++..++.+++++.|+++ ...+...-. ..+.++++.+++ ..
T Consensus 334 --T~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--g~G~~~~i~~~~~~~~~~~~ 406 (465)
T 2yky_A 334 --TFNNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAPLQFT--GLGSLGTIHFSRAPIRSAGD 406 (465)
Confidence 2345555556666778877664 35567777888888888775 232211101 234456665532 11
Q ss_pred -------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 318 -------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 318 -------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
...++++.|.++ ||.+.++... . +++....++.|...++|+
T Consensus 407 ~~~~d~~~~~~~~~~ll~~-GV~v~p~~~~---~---~s~~~t~edid~~l~~l~ 454 (465)
T 2yky_A 407 VRAADQQLKELFFFHMLRK-GIYLAPRGMY---A---LSLEIADAGRDAFAEALA 454 (465)
Confidence 134688888755 9999875421 1 444444444444444443
No 232
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=156.28 Aligned_cols=229 Identities=14% Similarity=0.102 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC----CCeEEEEeCCcchHHHHHHHHHhCCceEEEeC---C
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---D 116 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~ 116 (367)
.+.+-..+-+.+|.+.....++++|+|.+++.++.+.+.+ +++||++...|.|.. +.+...|+++++++. +
T Consensus 118 tn~l~ld~L~~~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~--kAliL~Gl~Pv~V~p~~d~ 195 (501)
T 3hl2_A 118 TNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--KSMITAGFEPVVIENVLEG 195 (501)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--HHHHHTTCEEEEECEEEET
T ss_pred HHHHHHHHHHHcCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH--HHHHHcCCeEEEEeeeecc
Confidence 3343333333449987655788899997777766665543 499999999998853 667889999999876 2
Q ss_pred CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-cccccHHHHHHHHHhcCCCcEEEEeeeeccCceee-----ccccc
Q 017726 117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-----RMDEW 190 (367)
Q Consensus 117 ~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-----~~~~~ 190 (367)
+...+|++.++++|++++ ....++++.++++.. |.+.|+++|.++|++ +|+++++|+||+.-.... .....
T Consensus 196 ~~~~id~e~le~aI~e~g-a~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~--~gIpllVDeAhGah~~~~~~lp~sA~~~ 272 (501)
T 3hl2_A 196 DELRTDLKAVEAKVQELG-PDCILCIHSTTSCFAPRVPDRLEELAVICAN--YDIPHIVNNAYGVQSSKCMHLIQQGARV 272 (501)
T ss_dssp TEEEECHHHHHHHHHHHC-GGGEEEEEEECSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTCTTCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhcC-CCcEEEEEecCCCCCCcccccHHHHHHHHHH--cCCeEEEeCcchhhhhhhhhhHHHHHhc
Confidence 345789999999999863 234455555555443 455899999999999 999999999998643221 11223
Q ss_pred c-ceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH
Q 017726 191 G-IDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE 268 (367)
Q Consensus 191 ~-~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~ 268 (367)
| +|+++.|+||++..+.|.++++. ++++++++.... . |+ .+....+.+..++..+..
T Consensus 273 GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~y-----P-----------Gr-----~S~Spsldl~~tLL~lGr 331 (501)
T 3hl2_A 273 GRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMY-----P-----------GR-----ASASPSLDVLITLLSLGS 331 (501)
T ss_dssp SCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTS-----C-----------SC-----BCSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEecccccceeecCceEEEeCCHHHHHHHHHhC-----C-----------CC-----CCCcHHHHHHHHHHHHHH
Confidence 5 99999999999988877566654 556666654321 0 22 223333668888889999
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHc----CCcccc
Q 017726 269 EGLENVIERHRRLGKATRLAVEAW----GLKNCT 298 (367)
Q Consensus 269 ~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 298 (367)
.|++++.++..+++++|++.|+++ |.+++.
T Consensus 332 ~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~ 365 (501)
T 3hl2_A 332 NGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH 365 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcC
Confidence 999999999999999999999995 445544
No 233
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.70 E-value=2.9e-16 Score=144.52 Aligned_cols=241 Identities=15% Similarity=0.118 Sum_probs=157.6
Q ss_pred hHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcc
Q 017726 21 PDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQF 95 (367)
Q Consensus 21 ~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~ 95 (367)
++++.+++.++... ...+. ....++.+.|++.+.. .+.+.|++|||+|++.++... ....++|+.....|+
T Consensus 105 hp~v~~Av~~q~~~~~~~~~~~--~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yH 180 (454)
T 4ao9_A 105 APEIRDAVIEAMQGGINLTGHN--LLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYH 180 (454)
T ss_dssp CHHHHHHHHHHHHTCSCCCSEE--SSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBC
T ss_pred CHHHHHHHHHHHhcCCCccCCc--HHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcC
Confidence 56677777664322 11222 3345777888888753 346999999999999988653 234567888888887
Q ss_pred hHHHHHHH----HHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcC
Q 017726 96 SLLWIDQQ----QRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYR 167 (367)
Q Consensus 96 ~~~~~~~~----~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~ 167 (367)
+......+ .........+|.+ |++.+++.++++. +++.+|++.......|.+.| +++|+++|++
T Consensus 181 G~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~-~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~-- 252 (454)
T 4ao9_A 181 GGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHG-PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQ-- 252 (454)
T ss_dssp STTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTG-GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHH--
T ss_pred CccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcC-CceEEEEeccccCCCCccCCchhhHHHHHHHHhh--
Confidence 74310000 0011223333332 7899999998765 56788999888888998887 8899999999
Q ss_pred CCcEEEEeeeeccCce---eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 168 HPALFLVDGVSSICAI---DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~---~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
+|+++|+||++....- .........|+++. .|.++|...+|.+.+++++.+.+.+.... .+ ..+
T Consensus 253 ~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t~--gK~lggG~Piga~~~~~ei~~~~~~~~~~-~~----------h~~ 319 (454)
T 4ao9_A 253 VGALLVFDEVMTSRLAPHGLANKLGIRSDLTTL--GKYIGGGMSFGAFGGRADVMALFDPRTGP-LA----------HSG 319 (454)
T ss_dssp HTCEEEEECTTGGGGSTTCHHHHHTCCCSEEEE--EGGGGTTSSCEEEEECHHHHGGGCTTTCS-CC----------CCC
T ss_pred cCCEEEEECCCcCCCccccchhccCCCCcEEEe--ccccCCCCcceeeeeHHHHHHHHhhccCC-cc----------ccC
Confidence 9999999999862110 01112234688866 58887766689999999998877542211 11 113
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
.++.+...+++..++|+.+.++ +..++..++.++|++.|+++
T Consensus 320 ---T~~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l 361 (454)
T 4ao9_A 320 ---TFNNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNAL 361 (454)
T ss_dssp ---TTTTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHH
Confidence 2345666666666677776554 45566777777888777664
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.66 E-value=1.1e-13 Score=127.81 Aligned_cols=310 Identities=12% Similarity=0.076 Sum_probs=188.8
Q ss_pred hHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
++++.+++.++... +. .....+...++.+.|.++...+..+.+.|++||++|++.++... .....+|+....+|
T Consensus 82 ~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~y 161 (456)
T 4atq_A 82 DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAY 161 (456)
T ss_dssp CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEeccc
Confidence 56667776654221 11 11122445577788888886554556899999999999988642 23456888888888
Q ss_pred chHHHHHHHHH------------hCCceEEEeCCCCC------CCCHHHHHHHHh---cc-CCCCccEEEEEecCCCccc
Q 017726 95 FSLLWIDQQQR------------LNFNVDVVESDWGE------GAKLDVLASKLA---AD-TAHTIKAICIVHNETATGV 152 (367)
Q Consensus 95 ~~~~~~~~~~~------------~g~~~~~v~~~~~~------~~d~e~l~~~i~---~~-~~~~~~lv~~~~~~n~tG~ 152 (367)
++......+.. ....+..+|..... ..+.+.+++.++ +. ..+++.+|++.......|.
T Consensus 162 HG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~ 241 (456)
T 4atq_A 162 HGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGF 241 (456)
T ss_dssp CCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTC
T ss_pred CCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCc
Confidence 88532111110 01234555544221 112333333332 11 1146788899888888888
Q ss_pred ccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 153 TNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 153 ~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
+.| +++++++|++ ||+++|+||++..... .........|+++++ |.++|...+|.+.+++++.+.+.
T Consensus 242 ~~p~~~fl~~lr~lc~~--~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~~~~~i~~~~~ 317 (456)
T 4atq_A 242 IVPAEGFLPALSEWAKE--KGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAITGRADLLDAVH 317 (456)
T ss_dssp BCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTTSC
T ss_pred cccchhhhHHHHHHHhh--cCCceEecccccccCCccccccccccCCCCchhhhh--hcccCcCCceeeEecHHHHhccc
Confidence 875 8899999999 9999999999875321 122223357998885 77777666899999999877665
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CC-----cc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GL-----KN 296 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~-----~~ 296 (367)
+... +. .++.+...+++..++|+.++++++ .++..+..+++.+.|+++ .+ ++
T Consensus 318 ~~~~----------------~~--Tf~gnpla~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~~ 376 (456)
T 4atq_A 318 PGGL----------------GG--TYGGNPVACAAALAAIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGSV 376 (456)
T ss_dssp TTSS----------------CC--SSSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----C
T ss_pred ccCC----------------CC--CCCCChHHHHhhHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence 4311 21 345677777888889999888764 345566677777777664 11 22
Q ss_pred ccCCCccCCCceEEEEcCCCC----C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 297 CTQKEEWFSDTVTAVIVPSHI----N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~----~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+..-. -.+.++.+.+.+.. + ...+.+.+.++ |+.+.+.- ..++.||+.+....++++++
T Consensus 377 v~~VR--G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~g--~~~~~irl~PpL~it~~~id 442 (456)
T 4atq_A 377 VGDIR--GRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCG--TYGNVIRLLPPLVISDELLI 442 (456)
T ss_dssp EEEEE--EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEEC--TTSCEEEECCCTTCCHHHHH
T ss_pred eEEee--ecceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEecC--CCCCEEEEECCCCCCHHHHH
Confidence 22100 12335555552211 1 23577777655 99886531 23568999876666665443
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.60 E-value=3.4e-13 Score=125.13 Aligned_cols=311 Identities=16% Similarity=0.074 Sum_probs=188.9
Q ss_pred hHHHHHHHccCCCC----CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CC-CCeE
Q 017726 21 PDQVIRAMNRNNED----YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~-gd~v 87 (367)
.+++.+++.++... +... ...+...++.++|.++...+- +.+.|++||++|++.++.... .+ ..+|
T Consensus 85 ~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~i 163 (473)
T 4e3q_A 85 HKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS-GRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKI 163 (473)
T ss_dssp CHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS-CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred CHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc-cEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceE
Confidence 45666666654321 1111 123445577888888876543 359999999999999886421 23 3467
Q ss_pred EEEeCCcchHHHHHHHHHhC-----------CceEEEeCCC------CCCC-------CHHHHHHHHhccCCCCccEEEE
Q 017726 88 ISFLIGQFSLLWIDQQQRLN-----------FNVDVVESDW------GEGA-------KLDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g-----------~~~~~v~~~~------~~~~-------d~e~l~~~i~~~~~~~~~lv~~ 143 (367)
+....+|++......+ ..| .....++.+. .+.. ..+++++.+.+...+++.+|++
T Consensus 164 i~~~~~yHG~t~~a~s-~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~ 242 (473)
T 4e3q_A 164 LTRWNAYHGVTAVSAS-MTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFA 242 (473)
T ss_dssp EEETTCCCCSSHHHHH-HSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEE
T ss_pred EEeeceECCCcccccc-ccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 8888888875322211 111 1233343321 1111 1245666665533246778888
Q ss_pred EecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceeee
Q 017726 144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 144 ~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
.......|.+.| +++++++|++ +|+++|.||++..+.. .........|+++. .|.++|. ..+|.++
T Consensus 243 EPiqg~gG~~~p~~~fl~~lr~lc~~--~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~--~K~l~gG~~Pl~av~ 318 (473)
T 4e3q_A 243 EPVMGAGGVIPPAKGYFQAILPILRK--YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIIS--SKNLTAGFFPMGAVI 318 (473)
T ss_dssp CSSBSTTTSBCCCTTHHHHHHHHHHH--TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEE--CGGGGTTSSCCEEEE
T ss_pred CCccCCCCceeCCHHHHHHHHHHhcc--cceEEeccCccccCCcccchhHHHhcCCCCChHHh--cccccCCCCCccccc
Confidence 888888888775 8899999999 9999999999875422 11222335788877 5888665 5589999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+..... ....+..+. .++.+...+++..++|+.++++++ .++..+..++|++.|+++
T Consensus 319 ~~~~i~~~~~~~~~---------~~~~~~hg~--T~~Gnpla~Aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~ 384 (473)
T 4e3q_A 319 LGPELSKRLETAIE---------AIEEFPHGF--TASGHPVGCAIALKAIDVVMNEGL---AENVRRLAPRFEERLKHIA 384 (473)
T ss_dssp ECHHHHHHHHHHHH---------HHSCCCCCC--TTTTCHHHHHHHHHHHHHHHHSSH---HHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHhccccc---------cccccccCC--CCCCCcchhhhhhhhhhhhccccH---HHHHHHHHHHHHHHHHHHh
Confidence 99999887753200 000011132 445677777788888888888764 446677888899988886
Q ss_pred CCccccCCCccCCCceEEEEcCCCC------C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHI------N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.+..-. -.+.++.+.+.++. + ...+.+.+.++ |+.+++. ++.+|+.+....+++++
T Consensus 385 ~~~~v~~vR--G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----g~~i~l~PPL~it~~ei 454 (473)
T 4e3q_A 385 ERPNIGEYR--GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRPL-----GQSVVLCPPFILTEAQM 454 (473)
T ss_dssp TSTTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHHH
T ss_pred cCCCeeEEe--ecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCCCCHHHH
Confidence 322222100 12334555542111 1 34577777655 9988752 46799987656665544
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.49 E-value=1.9e-13 Score=135.10 Aligned_cols=311 Identities=10% Similarity=0.008 Sum_probs=178.8
Q ss_pred hHHHHHHHccCCCC--CCC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-----CC--------
Q 017726 21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-----SP-------- 83 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-----~~-------- 83 (367)
.+++.+|+.++... |.. ....+...++.++|+++.+....+.+.|++||++|++.++...+ ..
T Consensus 399 ~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~ 478 (831)
T 4a0g_A 399 QAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEE 478 (831)
T ss_dssp HHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred CHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccc
Confidence 45666666654321 211 11234455888888888864423469999999999998886431 11
Q ss_pred ----CCeEEEEeCCcchHHHHHHHHHhCCc----------------------------eEEEeCCCCCC---------CC
Q 017726 84 ----GDRIISFLIGQFSLLWIDQQQRLNFN----------------------------VDVVESDWGEG---------AK 122 (367)
Q Consensus 84 ----gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~~---------~d 122 (367)
..+||....+|++..+.. +...|.. +..++.+...+ -+
T Consensus 479 ~~~~r~~iI~~~~syHG~T~ga-ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 557 (831)
T 4a0g_A 479 EKHIVVKVIALRGSYHGDTLGA-MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTS 557 (831)
T ss_dssp ---CCEEEEEETTCCCCSSHHH-HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESC
T ss_pred cccCccEEEEecCCcccCceee-eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccc
Confidence 236888888888764322 2222210 01122221100 01
Q ss_pred ------------------HHHHHHHHhc-----cCCCCccEEEEEec-CCCcccccc----HHHHHHHHHhcCCCcEEEE
Q 017726 123 ------------------LDVLASKLAA-----DTAHTIKAICIVHN-ETATGVTNN----LSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 123 ------------------~e~l~~~i~~-----~~~~~~~lv~~~~~-~n~tG~~~~----~~~i~~~~~~~~~~~~vi~ 174 (367)
.+++++.+++ .+ +++.+|++... ++..|.+.+ +++|+++|++ ||+++|+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~-~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~--~gilLI~ 634 (831)
T 4a0g_A 558 RDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQS-AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRN--RKIPVIF 634 (831)
T ss_dssp HHHHHCGGGGGSHHHHHHHHHHHHHC----------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHH--TTCCEEE
T ss_pred hhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCC-CcEEEEEEecccccCCCCccCCHHHHHHHHHHHHH--cCCeEEE
Confidence 2567777753 22 46788888875 788888875 8899999999 9999999
Q ss_pred eeeeccCce---ee--ccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 175 DGVSSICAI---DF--RMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 175 D~~~~~~~~---~~--~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
||++..... .+ .......|+++ .+|.++|. ..+|++++++++.+.+....... .+..+. .
T Consensus 635 DEV~tGfGRtG~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~----------~~~hg~--T 700 (831)
T 4a0g_A 635 DEVFTGFWRLGVETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATDAVFDSFSGDSKLK----------ALLHGH--S 700 (831)
T ss_dssp ECTTTTTTTTSBSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTCSSCGGG----------SCCCCC--T
T ss_pred EcCccccccCCCchhhHhcCCCCcEEE--EecccccCccCcEEEEECHHHHHHHhcccccc----------cceeec--C
Confidence 998763211 11 11123468775 57888764 34799999999988775421000 011122 3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHH-HHHHHHHH----HHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCC------
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLEN-VIERHRRL----GKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH------ 316 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~-~~~~~~~~----~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------ 316 (367)
++.+...+++..++|+.++++++.+ +.+....+ .+.+.+.+++. .+..+.. .+.++.+.+.++
T Consensus 701 ~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-----~Gl~~~iel~~~~~~~~~ 775 (831)
T 4a0g_A 701 YSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV-----IGTLFALELKADASNSGY 775 (831)
T ss_dssp TTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-----ETTEEEEEEC--------
T ss_pred CcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-----cccEEEEEEecCcccccc
Confidence 4567777778888888887654222 11111111 12344445554 2222221 233555555221
Q ss_pred --CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 317 --INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 --~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
....++.+.|.++ ||.+++. ++.+|+++....+++++.
T Consensus 776 ~~~~a~~~~~~l~e~-Gv~v~p~-----g~~lrl~pp~~~t~e~id 815 (831)
T 4a0g_A 776 ASLYAKSLLIMLRED-GIFTRPL-----GNVIYLMCGPCTSPEICR 815 (831)
T ss_dssp -CHHHHHHHHHHHHT-TEECCCB-----TTEEEEECCTTCCHHHHH
T ss_pred chHHHHHHHHHHHHC-CcEEEec-----CCEEEEECCCCCCHHHHH
Confidence 1244688888755 9999864 468999876666655543
No 237
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Probab=67.80 E-value=27 Score=29.67 Aligned_cols=85 Identities=15% Similarity=-0.006 Sum_probs=52.9
Q ss_pred HHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEe----CCCCCCCCHHHHHHHHhccCCCCccEEEEEec
Q 017726 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE----SDWGEGAKLDVLASKLAADTAHTIKAICIVHN 146 (367)
Q Consensus 71 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~----~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~ 146 (367)
.++..+- .+ +++++++.+..+-+... .+..|.++..++ +.....++++++.+..+++ |.+.++.||
T Consensus 128 na~~~v~-~~--~~~~iif~pD~~Lg~~l---~~~~~k~~i~~~~~g~C~vh~~~t~e~i~~~~~~~----P~a~v~~HP 197 (300)
T 1wzu_A 128 NAVEVVK-KL--DSDVVIFGPDKNLAHYV---AKMTGKKIIPVPSKGHCYVHQKFTLDDVERAKKLH----PNAKLMIHP 197 (300)
T ss_dssp THHHHHH-TC--SCSEEEEESCHHHHHHH---HHHHCCEEEEC-----------CCHHHHHHHHHHC----TTCEEEECT
T ss_pred HHHHHHH-hC--CCCeEEEECChhHHHHH---HHHcCCeEEECCCCCcCCCcccCCHHHHHHHHHHC----CCCEEEECC
Confidence 3555443 33 67888887664444333 233488777665 2233467999999999965 488899999
Q ss_pred CCCccccc------cHHHHHHHHHh
Q 017726 147 ETATGVTN------NLSKVRKLLDE 165 (367)
Q Consensus 147 ~n~tG~~~------~~~~i~~~~~~ 165 (367)
.-|--.+. +-..|.+.+++
T Consensus 198 Ec~~~v~~~aD~vgST~~ii~~~~~ 222 (300)
T 1wzu_A 198 ECIPEVQEKADIIASTGGMIKRACE 222 (300)
T ss_dssp TSCHHHHHTCSEECCHHHHHHHGGG
T ss_pred CCCHHHHhhccccCCHHHHHHHHHh
Confidence 87655432 46678888877
No 238
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=63.11 E-value=56 Score=26.07 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=66.9
Q ss_pred HHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HH
Q 017726 22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WI 100 (367)
Q Consensus 22 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~ 100 (367)
+.+++.+.+.......+.......++-..+.+..+..+...|+=.+.|++.....+...+.++.+|+..+..-.... ..
T Consensus 19 ~~~l~~~~~~a~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 98 (221)
T 3dr5_A 19 DAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAK 98 (221)
T ss_dssp CHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 33444444432222222223444566666666666542235766677777666555544555677877776322221 22
Q ss_pred HHHHHhCCc---eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh-cCCCcEEEEee
Q 017726 101 DQQQRLNFN---VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE-YRHPALFLVDG 176 (367)
Q Consensus 101 ~~~~~~g~~---~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~-~~~~~~vi~D~ 176 (367)
...+..|.. +..+.. |..++...+.+ ...++|++... ........+.+.+ ...|.++++|.
T Consensus 99 ~~~~~~g~~~~~i~~~~g------da~~~l~~~~~---~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 99 ALFREAGYSPSRVRFLLS------RPLDVMSRLAN---DSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp HHHHHTTCCGGGEEEECS------CHHHHGGGSCT---TCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred HHHHHcCCCcCcEEEEEc------CHHHHHHHhcC---CCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 334445543 443332 23332222211 34577766432 1222222222322 33567777776
Q ss_pred ee
Q 017726 177 VS 178 (367)
Q Consensus 177 ~~ 178 (367)
+.
T Consensus 164 ~~ 165 (221)
T 3dr5_A 164 AL 165 (221)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 239
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=62.61 E-value=45 Score=25.23 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=41.7
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
.....+..|.+++.+..+ ..++++.+++.+ .++++|.++.... .....++++.+.+++
T Consensus 38 va~~l~~~G~eVi~lG~~----~p~e~lv~aa~~---~~~diV~lS~~~~--~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLR----QTPEQVAMAAVQ---EDVDVIGVSILNG--AHLHLMKRLMAKLRE 95 (161)
T ss_dssp HHHHHHHTTCEEECCCSB----CCHHHHHHHHHH---TTCSEEEEEESSS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC----CCHHHHHHHHHh---cCCCEEEEEeech--hhHHHHHHHHHHHHh
Confidence 446677789988866543 578888888876 4679998887543 345567778877777
No 240
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=60.99 E-value=23 Score=28.67 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=51.6
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
+++..+..+...+.+-+.+...++..... ...+.+.... ..+++..... +++++.|||..+.. ..+
T Consensus 12 m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~----a~~~~~~~~~-dVIISRGgta~~Lr---~~~-- 81 (225)
T 2pju_A 12 DKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTY----IRKKLANERC-DAIIAAGSNGAYLK---SRL-- 81 (225)
T ss_dssp -CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHH----HHHHTTTSCC-SEEEEEHHHHHHHH---TTC--
T ss_pred CCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHH----HHHHHhcCCC-eEEEeCChHHHHHH---hhC--
Confidence 34455555555555555555554322110 1223333333 3334433323 48888887766543 222
Q ss_pred CCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh
Q 017726 84 GDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131 (367)
Q Consensus 84 gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~ 131 (367)
+-.|+-.....+-.. ....++..+-++-.+..... ....+.+.+.+.
T Consensus 82 ~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~-~~~~~~i~~ll~ 129 (225)
T 2pju_A 82 SVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQET-IPALVAFQKTFN 129 (225)
T ss_dssp SSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSC-CHHHHHHHHHHT
T ss_pred CCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchh-hhHHHHHHHHhC
Confidence 223555544444332 23334444555555554321 124566777665
No 241
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=60.58 E-value=43 Score=26.55 Aligned_cols=58 Identities=10% Similarity=-0.044 Sum_probs=41.2
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
.....+..|.+++.+..+ ..++++.+++.+ .++++|.++... +.....+.++.+.+++
T Consensus 108 va~~l~~~G~~v~~LG~~----vp~~~l~~~~~~---~~~d~v~lS~~~--~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 108 VAMMLESGGFTVYNLGVD----IEPGKFVEAVKK---YQPDIVGMSALL--TTTMMNMKSTIDALIA 165 (210)
T ss_dssp HHHHHHHTTCEEEECCSS----BCHHHHHHHHHH---HCCSEEEEECCS--GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC----CCHHHHHHHHHH---cCCCEEEEeccc--cccHHHHHHHHHHHHh
Confidence 456678889998877643 578888888876 367899888743 3344567777777776
No 242
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=60.23 E-value=42 Score=26.87 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=47.9
Q ss_pred CeEEEEeCC--cchH---HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEE--EecCCCccccccHH
Q 017726 85 DRIISFLIG--QFSL---LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICI--VHNETATGVTNNLS 157 (367)
Q Consensus 85 d~vl~~~~~--~~~~---~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~--~~~~n~tG~~~~~~ 157 (367)
.+|++..++ .+.. ......+..|.+++.+..+ +.++++.+++.+ .++++|.+ +.. .+.....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~----vp~e~iv~~~~~---~~~d~v~l~~S~l--~~~~~~~~~ 163 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD----VLNENVVEEAAK---HKGEKVLLVGSAL--MTTSMLGQK 163 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS----CCHHHHHHHHHH---TTTSCEEEEEECS--SHHHHTHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC----CCHHHHHHHHHH---cCCCEEEEEchhc--ccCcHHHHH
Confidence 466665542 2222 2456778889998877554 568888777776 46799988 654 334455688
Q ss_pred HHHHHHHh
Q 017726 158 KVRKLLDE 165 (367)
Q Consensus 158 ~i~~~~~~ 165 (367)
++.+.+++
T Consensus 164 ~~i~~l~~ 171 (215)
T 3ezx_A 164 DLMDRLNE 171 (215)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888877
No 243
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=56.20 E-value=30 Score=30.52 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee-eccccccceEEE
Q 017726 118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID-FRMDEWGIDVAL 196 (367)
Q Consensus 118 ~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~~~~~~~~d~~~ 196 (367)
.+.++.+...+.|++. +.|-|.+. -|-|...+-..|.++.++....++|+-|-+|+..+.+ ......++|+++
T Consensus 38 ~y~fEi~kti~~I~~~---~~krVaLQ---fPdgLl~~a~~Ia~~L~~~~~e~~IlgDttYGACCVDe~aA~~v~aD~lV 111 (378)
T 3lzd_A 38 LHEIPKSEILKELKRI---GAKRVLIQ---SPEGLRREAEELAGFLEENNIEVFLHGEINYGACDPADREAKLVGCDALI 111 (378)
T ss_dssp CCSCCHHHHHHHHHHT---TCCEEEEE---CCGGGHHHHHHHHHHHHTTTCEEEEECSCCCCTTSCCHHHHHHTTCSEEE
T ss_pred cccccHHHHHHHHHhc---CCCEEEEE---CCHHHHHHHHHHHHHHhhcCceEEEEcCCcccCcccCHHHHhhcCCCEEE
Confidence 3446888888888874 34666654 4689988888888888763345777789999988764 223345789999
Q ss_pred ecCCCccc
Q 017726 197 TGSQKALS 204 (367)
Q Consensus 197 ~s~~K~~~ 204 (367)
.-+|-++.
T Consensus 112 HyGHsCL~ 119 (378)
T 3lzd_A 112 HLGHSYMK 119 (378)
T ss_dssp EEECCCCS
T ss_pred EcCCCcCC
Confidence 98888886
No 244
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=53.93 E-value=53 Score=27.09 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=51.2
Q ss_pred CCeEEEEeCC--cchH---HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH
Q 017726 84 GDRIISFLIG--QFSL---LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK 158 (367)
Q Consensus 84 gd~vl~~~~~--~~~~---~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~ 158 (367)
+.+|++..++ .+.. .....++..|.+++.+..+ ..++++.+.+.+ .++++|.++.... .....+.+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~----vp~e~l~~~~~~---~~~d~V~lS~l~~--~~~~~~~~ 193 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD----VPAEEVLAAVQK---EKPIMLTGTALMT--TTMYAFKE 193 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE----CCSHHHHHHHHH---HCCSEEEEECCCT--TTTTHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC----CCHHHHHHHHHH---cCCCEEEEEeecc--CCHHHHHH
Confidence 4466666553 2221 2456678889999888654 457888777765 3678998887543 33456777
Q ss_pred HHHHHHhcCCCcEEEE
Q 017726 159 VRKLLDEYRHPALFLV 174 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~ 174 (367)
+.+.+++...++.|++
T Consensus 194 ~i~~l~~~~~~~~v~v 209 (258)
T 2i2x_B 194 VNDMLLENGIKIPFAC 209 (258)
T ss_dssp HHHHHHTTTCCCCEEE
T ss_pred HHHHHHhcCCCCcEEE
Confidence 7777777323344444
No 245
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=52.48 E-value=1.1e+02 Score=26.59 Aligned_cols=76 Identities=9% Similarity=-0.051 Sum_probs=47.1
Q ss_pred HHHHHHHhCCceEEEeCCCCCC-CCHHHHHHHHhccCC--CCccEEEEEecCCCccccccHHHHHHH-HHhcCCCcEEEE
Q 017726 99 WIDQQQRLNFNVDVVESDWGEG-AKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKVRKL-LDEYRHPALFLV 174 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~-~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~~~~i~~~-~~~~~~~~~vi~ 174 (367)
..+.++..|+.-.-+-.+.-+. .+.+.+.+-.+.-.. ...-+++...| .||.-++.+.+.++ ++. .++.-+=
T Consensus 110 la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P--~tg~~l~~e~~~~L~a~~--pnIvGiK 185 (344)
T 2hmc_A 110 HAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP--YYGFATRADLFFALRAEH--KNLVGFK 185 (344)
T ss_dssp HHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG--GGTBCCCHHHHHHHHHHC--TTEEEEE
T ss_pred HHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC--ccCCCcCHHHHHHHHhcC--CCEEEEE
Confidence 4456677898877665555555 565555443322110 12234555555 89999999999999 765 6777676
Q ss_pred eeee
Q 017726 175 DGVS 178 (367)
Q Consensus 175 D~~~ 178 (367)
|.+.
T Consensus 186 dssg 189 (344)
T 2hmc_A 186 EFGG 189 (344)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 7654
No 246
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=52.41 E-value=88 Score=25.72 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=54.3
Q ss_pred hcCCCCceEEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc
Q 017726 55 FKTTSGTPFLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA 132 (367)
Q Consensus 55 ~~~~~~~~v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~ 132 (367)
|.++. .+++++|++.++-.++ ..+.+.|-+|++.+-..-... .....+..|.++..+..+-. |.+++++.+++
T Consensus 5 f~L~g--KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~---~~~~v~~~~~~ 79 (255)
T 4g81_D 5 FDLTG--KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVT---DELAIEAAFSK 79 (255)
T ss_dssp TCCTT--CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTT---CHHHHHHHHHH
T ss_pred cCCCC--CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC---CHHHHHHHHHH
Confidence 44444 2455556666665544 456778888887755222111 22334455777777766533 45555554443
Q ss_pred ---cCCCCccEEEEEecCCCccccc--cHHHHHHHH
Q 017726 133 ---DTAHTIKAICIVHNETATGVTN--NLSKVRKLL 163 (367)
Q Consensus 133 ---~~~~~~~lv~~~~~~n~tG~~~--~~~~i~~~~ 163 (367)
.. .+.++++-+..-++.+.+. +.+++.+..
T Consensus 80 ~~~~~-G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~ 114 (255)
T 4g81_D 80 LDAEG-IHVDILINNAGIQYRKPMVELELENWQKVI 114 (255)
T ss_dssp HHHTT-CCCCEEEECCCCCCCCCGGGCCHHHHHHHH
T ss_pred HHHHC-CCCcEEEECCCCCCCCChhhCCHHHHHHHH
Confidence 22 3566666555444545443 344444443
No 247
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=51.54 E-value=17 Score=28.60 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=53.7
Q ss_pred CHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCC
Q 017726 122 KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQK 201 (367)
Q Consensus 122 d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K 201 (367)
+.++++++++. ....+++- +|.+..++++.+.+|++..-++|+.|-..+++.- +.+++++. +
T Consensus 18 ~~~~l~~al~s----~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d-----~~ai~fL~----~ 79 (192)
T 3kts_A 18 NQKDMEKILEL----DLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLVNGLKND-----DYAIDFLC----T 79 (192)
T ss_dssp SSHHHHHHTTS----SCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGEETCCCS-----HHHHHHHH----H
T ss_pred CHHHHHHHHcC----CCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCchhccCCc-----HHHHHHHH----h
Confidence 67899999873 45677664 4788999999999999555556677877776432 11233332 1
Q ss_pred cccCCCcceeeeeCHHHHHHhccC
Q 017726 202 ALSLPTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 202 ~~~g~~g~g~~~~~~~~~~~~~~~ 225 (367)
.. +|- |++..+...++.....
T Consensus 80 ~~-~pd--GIIsTk~~~i~~Ak~~ 100 (192)
T 3kts_A 80 EI-CPD--GIISTRGNAIMKAKQH 100 (192)
T ss_dssp TT-CCS--EEEESCHHHHHHHHHT
T ss_pred CC-CCC--EEEeCcHHHHHHHHHC
Confidence 11 222 7777777777666543
No 248
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=50.00 E-value=37 Score=24.88 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC-CCcEEEEe
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR-HPALFLVD 175 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~-~~~~vi~D 175 (367)
.....+..|.++..+-.+ ..++++.+++.+ .++++|.++....+ ....++++.+.+++.. .++.|++=
T Consensus 23 v~~~l~~~G~~Vi~lG~~----~p~e~~v~~a~~---~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNIGVL----SPQELFIKAAIE---TKADAILVSSLYGQ--GEIDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHTTCEEEEEEEE----ECHHHHHHHHHH---HTCSEEEEEECSST--HHHHHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHCCCEEEECCCC----CCHHHHHHHHHh---cCCCEEEEEecCcC--cHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 456778899999977543 468888887776 36789988875432 2334666666666621 14555543
No 249
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=48.84 E-value=83 Score=26.22 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=52.2
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
+++++|++.++-.++ ..+...|-+|++..-. .......++..|.+...+..+-. |.+++++.+++ .. .+.
T Consensus 31 valVTGas~GIG~aiA~~la~~Ga~V~i~~r~--~~~l~~~~~~~g~~~~~~~~Dv~---~~~~v~~~~~~~~~~~-G~i 104 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRFVAEGARVFITGRR--KDVLDAAIAEIGGGAVGIQADSA---NLAELDRLYEKVKAEA-GRI 104 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHCTTCEEEECCTT---CHHHHHHHHHHHHHHH-SCE
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHcCCCeEEEEecCC---CHHHHHHHHHHHHHHc-CCC
Confidence 444455566665544 4567788888877652 22233455666777777776543 45555555443 21 245
Q ss_pred cEEEEEecCCCccccc--cHHHHHHHHH
Q 017726 139 KAICIVHNETATGVTN--NLSKVRKLLD 164 (367)
Q Consensus 139 ~lv~~~~~~n~tG~~~--~~~~i~~~~~ 164 (367)
++++-+...++.+.+. +.+++.+..+
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~ 132 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFD 132 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHH
Confidence 5665554444444443 3444444443
No 250
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=48.38 E-value=1.1e+02 Score=24.98 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=49.3
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC--------CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--------WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
|.++..+-...+...+..+.+..+..+..++.. ....+++++..++++. -+++.++.+|-..-.-...+
T Consensus 160 ~~~i~~~GDt~~~~~~~~~~~~~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~---l~~~~vi~~H~~~~~~~~~~ 236 (264)
T 3rpc_A 160 EPTVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVR---KPEAKIIAVHMDTVNHTATS 236 (264)
T ss_dssp SCCEEECCSCCSCHHHHHHHHHHCCSEEEEECSCBCBTTCSSCSSCCHHHHHHHHHH---CTTSEEEEESCSSSTTBCSC
T ss_pred ccEEEEECCcCchHHHHHHHHHhCCCEEEEecCccccccccCCcccCHHHHHHHHHh---CCcCeEEEEccccccccccC
Confidence 345554433222223445566678888888876 2446788877777765 25678888887642223357
Q ss_pred HHHHHHHHHh
Q 017726 156 LSKVRKLLDE 165 (367)
Q Consensus 156 ~~~i~~~~~~ 165 (367)
.+++.+.+++
T Consensus 237 ~~~l~~~~~~ 246 (264)
T 3rpc_A 237 RKDVRKFIKG 246 (264)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888888887
No 251
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=46.03 E-value=77 Score=25.01 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=67.4
Q ss_pred CChHHHHHHHccCCCCCCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNEDYRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~ 97 (367)
.-|+.+++++.++...+.. ........++...+.... .+..|+=.+.|++.....+...+.++.+|+..+..-...
T Consensus 20 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~ 96 (221)
T 3u81_A 20 GDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCA 96 (221)
T ss_dssp TCHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH
T ss_pred CCHHHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHH
Confidence 3466777777765432211 111222233333333332 334576667777666655555455567788777733222
Q ss_pred H-HHHHHHHhCCc--eEEEeCCCCCCCCHHHHHHHHhc-cCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE
Q 017726 98 L-WIDQQQRLNFN--VDVVESDWGEGAKLDVLASKLAA-DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL 173 (367)
Q Consensus 98 ~-~~~~~~~~g~~--~~~v~~~~~~~~d~e~l~~~i~~-~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi 173 (367)
. ....++..|.. +..+.. |..++...+.+ ......++|++... .....+..++.+.++....|.+++
T Consensus 97 ~~a~~~~~~~~~~~~v~~~~~------d~~~~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~~~LkpgG~lv 167 (221)
T 3u81_A 97 AITQQMLNFAGLQDKVTILNG------ASQDLIPQLKKKYDVDTLDMVFLDHW---KDRYLPDTLLLEKCGLLRKGTVLL 167 (221)
T ss_dssp HHHHHHHHHHTCGGGEEEEES------CHHHHGGGTTTTSCCCCCSEEEECSC---GGGHHHHHHHHHHTTCCCTTCEEE
T ss_pred HHHHHHHHHcCCCCceEEEEC------CHHHHHHHHHHhcCCCceEEEEEcCC---cccchHHHHHHHhccccCCCeEEE
Confidence 2 22334445543 444432 33332212211 00024567776542 122223333333333334566777
Q ss_pred Eeeee
Q 017726 174 VDGVS 178 (367)
Q Consensus 174 ~D~~~ 178 (367)
+|.+.
T Consensus 168 ~~~~~ 172 (221)
T 3u81_A 168 ADNVI 172 (221)
T ss_dssp ESCCC
T ss_pred EeCCC
Confidence 77554
No 252
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=43.79 E-value=26 Score=27.81 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=28.6
Q ss_pred CccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE
Q 017726 137 TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL 173 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi 173 (367)
.|..+++.-..|..|......++.+++++ ||+.++
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~--h~l~ii 193 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKK--HGIKII 193 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHH--HTCCEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHH--cCCcEE
Confidence 45666655555899999999999999999 888776
No 253
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.26 E-value=39 Score=22.63 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH---HHHHHHHhCCceEEEeCC
Q 017726 46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL---WIDQQQRLNFNVDVVESD 116 (367)
Q Consensus 46 ~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~ 116 (367)
+++..+.++..--.+.-++++-...+--..++.....-|..|++.-...-.++ +....++.|++++.+..+
T Consensus 37 elkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiydqdqnrleefsrevrrrgfevrtvtsp 110 (134)
T 2l69_A 37 ELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSP 110 (134)
T ss_dssp HHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSH
T ss_pred HHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecCh
Confidence 56666666665555543444444455555555433222333333322223333 445567778888888654
No 254
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=43.06 E-value=39 Score=27.02 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-CCCe-EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCC
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-PGDR-IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGA 121 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-~gd~-vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 121 (367)
.+++.+.+.+.+|.+....+++.+-|..+-.++-..... .|=+ |...+.. +...... ....|+++.
T Consensus 68 V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~d-p~~kiG~-~~i~GvpV~---------- 135 (212)
T 3keo_A 68 VKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLD-SNDLVGK-TTEDGIPVY---------- 135 (212)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECT-TSTTTTC-BCTTCCBEE----------
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCC-chhccCc-eeECCeEEe----------
Confidence 557888889999998766677777666554432221122 2212 2233331 1100000 011243332
Q ss_pred CHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 122 KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 122 d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
..+++++.+++ .+++.++++.|.. ...++.+.|.+ .|+.-|..-+..
T Consensus 136 ~~~dL~~~v~~---~~Id~vIIAvPs~------~aq~v~d~lv~--~GIk~I~nFap~ 182 (212)
T 3keo_A 136 GISTINDHLID---SDIETAILTVPST------EAQEVADILVK--AGIKGILSFSPV 182 (212)
T ss_dssp EGGGHHHHC-C---CSCCEEEECSCGG------GHHHHHHHHHH--HTCCEEEECSSS
T ss_pred CHHHHHHHHHH---cCCCEEEEecCch------hHHHHHHHHHH--cCCCEEEEcCCc
Confidence 24677788776 3578888887642 35678888888 788777765543
No 255
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=42.47 E-value=1.9e+02 Score=26.09 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHH
Q 017726 47 LLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDV 125 (367)
Q Consensus 47 ~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~ 125 (367)
....++..++..+.+.|+=.+.|+++....+......+..|+..+....... ...-+++.|+.-+.+-. -|...
T Consensus 93 ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~-----~Da~~ 167 (456)
T 3m4x_A 93 SAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN-----HAPAE 167 (456)
T ss_dssp TTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC-----CCHHH
T ss_pred HHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe-----CCHHH
Confidence 3445566777776666776677777766656554444446666655322221 33445667765332322 25666
Q ss_pred HHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 126 LASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 126 l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+..... ...+.|++..|-+.+|++
T Consensus 168 l~~~~~----~~FD~Il~DaPCSg~G~~ 191 (456)
T 3m4x_A 168 LVPHFS----GFFDRIVVDAPCSGEGMF 191 (456)
T ss_dssp HHHHHT----TCEEEEEEECCCCCGGGT
T ss_pred hhhhcc----ccCCEEEECCCCCCcccc
Confidence 654443 356888888888888875
No 256
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=41.95 E-value=1.4e+02 Score=26.19 Aligned_cols=73 Identities=14% Similarity=-0.034 Sum_probs=46.7
Q ss_pred cCCCCCeEEEEeCCcchH-----H---HHHHHHHhCCceEEEeCCCC--CCC---C---HHHHHHHHhccCCCCccEEEE
Q 017726 80 TLSPGDRIISFLIGQFSL-----L---WIDQQQRLNFNVDVVESDWG--EGA---K---LDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~-----~---~~~~~~~~g~~~~~v~~~~~--~~~---d---~e~l~~~i~~~~~~~~~lv~~ 143 (367)
.+++||+|-+..|+.... . .....+..|.+++.-+.-.. +.+ | .++|.+++.+ +.+|+|+.
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~D---p~i~aI~~ 115 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYN---PDITCIMS 115 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTC---TTEEEEEE
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhC---CCCCEEEE
Confidence 368999999998865431 1 23455668999887654321 111 2 3566677764 57899888
Q ss_pred EecCCCcccccc
Q 017726 144 VHNETATGVTNN 155 (367)
Q Consensus 144 ~~~~n~tG~~~~ 155 (367)
+-..+-+-.++|
T Consensus 116 ~rGGyga~rlLp 127 (371)
T 3tla_A 116 TIGGDNSNSLLP 127 (371)
T ss_dssp SCCCSCGGGGGG
T ss_pred ccccccHHHHHh
Confidence 776666666665
No 257
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=41.84 E-value=51 Score=26.95 Aligned_cols=62 Identities=6% Similarity=0.042 Sum_probs=33.8
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC--CCCHHHHHHHHhccCCCCccEEEEEec
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVHN 146 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~e~l~~~i~~~~~~~~~lv~~~~~ 146 (367)
.+|.+|+++.............+..|+++..+++-... ..+.+.+.+.+.. .....|+++++
T Consensus 131 ~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~---~~~d~v~ftS~ 194 (254)
T 4es6_A 131 VHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRA---ERLNGLVVSSG 194 (254)
T ss_dssp SSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHH---TTCCEEECCSH
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHh---CCCCEEEEcCH
Confidence 35677777766443333445566678877777653221 1133455555543 24566666554
No 258
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=41.43 E-value=53 Score=22.51 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEE-EEeeeec
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALF-LVDGVSS 179 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~v-i~D~~~~ 179 (367)
..+.+.+.+.+++. ++..|++-.|-|..|..-+ ..+..+..++ .++.| ++||-.+
T Consensus 37 ~~~~~~l~~li~e~---~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~--~~lpV~~~DERlT 96 (98)
T 1iv0_A 37 EEDVEALLDFVRRE---GLGKLVVGLPLRTDLKESAQAGKVLPLVEALRA--RGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHH---TCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHH--TTCEEEEECCSCC
T ss_pred HHHHHHHHHHHHHc---CCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhc--CCCCEEEECCCCC
Confidence 34678899998873 5788999999898887765 3344444444 26654 4887643
No 259
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=40.31 E-value=50 Score=29.98 Aligned_cols=92 Identities=15% Similarity=0.056 Sum_probs=49.8
Q ss_pred eEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEE
Q 017726 62 PFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI 141 (367)
Q Consensus 62 ~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv 141 (367)
.++++++|..|...+ ..++..|-.|.+.++.... ......+..++++. .-. ++.++++ ...+|
T Consensus 14 ~vlVvGgG~va~~k~-~~L~~~ga~V~vi~~~~~~-~~~~l~~~~~i~~~--~~~----~~~~~l~---------~~~lV 76 (457)
T 1pjq_A 14 DCLIVGGGDVAERKA-RLLLEAGARLTVNALTFIP-QFTVWANEGMLTLV--EGP----FDETLLD---------SCWLA 76 (457)
T ss_dssp EEEEECCSHHHHHHH-HHHHHTTBEEEEEESSCCH-HHHHHHTTTSCEEE--ESS----CCGGGGT---------TCSEE
T ss_pred EEEEECCCHHHHHHH-HHHHhCcCEEEEEcCCCCH-HHHHHHhcCCEEEE--ECC----CCccccC---------CccEE
Confidence 477778887777654 3445567778887775332 22222222334333 211 2233331 22455
Q ss_pred EEEecCCCccccccHHHHHHHHHhcCCCcEE-EEeee
Q 017726 142 CIVHNETATGVTNNLSKVRKLLDEYRHPALF-LVDGV 177 (367)
Q Consensus 142 ~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~v-i~D~~ 177 (367)
+.+ ||.-..-..+.+.|++ .++++ ++|..
T Consensus 77 i~a-----t~~~~~n~~i~~~a~~--~~i~vn~~d~~ 106 (457)
T 1pjq_A 77 IAA-----TDDDTVNQRVSDAAES--RRIFCNVVDAP 106 (457)
T ss_dssp EEC-----CSCHHHHHHHHHHHHH--TTCEEEETTCT
T ss_pred EEc-----CCCHHHHHHHHHHHHH--cCCEEEECCCc
Confidence 553 3333335678899999 89986 45643
No 260
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=39.54 E-value=17 Score=33.12 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=27.9
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
+++..|+..+++++++.||+ +|+.||+|.+.
T Consensus 69 i~~~~Gt~~df~~lv~~aH~--~Gi~VilD~V~ 99 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNN--VGVRIYVDAVI 99 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred eCCCCCCHHHHHHHHHHHHH--CCCEEEEEEcc
Confidence 56678999999999999999 99999999763
No 261
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=39.26 E-value=1.6e+02 Score=24.17 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=41.8
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHH---HhccCCCCc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASK---LAADTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~---i~~~~~~~~ 138 (367)
++++.||+.++-..+ ..+...|-+|++.................+.++..+..+-. |.+++++. +.+. .+.
T Consensus 33 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~--g~i 107 (273)
T 3uf0_A 33 TAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLA---DLEGAANVAEELAAT--RRV 107 (273)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTT---CHHHHHHHHHHHHHH--SCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCC---CHHHHHHHHHHHHhc--CCC
Confidence 344455555664433 44667788888776421111122223345667777766533 44444443 3322 255
Q ss_pred cEEEEEecCCCcc
Q 017726 139 KAICIVHNETATG 151 (367)
Q Consensus 139 ~lv~~~~~~n~tG 151 (367)
++++-+......+
T Consensus 108 D~lv~nAg~~~~~ 120 (273)
T 3uf0_A 108 DVLVNNAGIIARA 120 (273)
T ss_dssp CEEEECCCCCCCC
T ss_pred cEEEECCCCCCCC
Confidence 6666554433333
No 262
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=39.21 E-value=1.1e+02 Score=26.16 Aligned_cols=56 Identities=5% Similarity=-0.074 Sum_probs=34.1
Q ss_pred HhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC-cEEE
Q 017726 105 RLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP-ALFL 173 (367)
Q Consensus 105 ~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~-~~vi 173 (367)
..+++++..+.. |.+.+.+++++. ++..|+.+...+ .+.....+.+.|++ .+ +..+
T Consensus 59 ~~~v~~~~~Dl~-----d~~~l~~~~~~~---~~d~Vi~~a~~~---n~~~~~~l~~aa~~--~g~v~~~ 115 (346)
T 3i6i_A 59 DKGAIIVYGLIN-----EQEAMEKILKEH---EIDIVVSTVGGE---SILDQIALVKAMKA--VGTIKRF 115 (346)
T ss_dssp HTTCEEEECCTT-----CHHHHHHHHHHT---TCCEEEECCCGG---GGGGHHHHHHHHHH--HCCCSEE
T ss_pred hCCcEEEEeecC-----CHHHHHHHHhhC---CCCEEEECCchh---hHHHHHHHHHHHHH--cCCceEE
Confidence 356666555543 688999998742 456666554331 23334678888888 55 5433
No 263
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=38.71 E-value=84 Score=26.19 Aligned_cols=76 Identities=5% Similarity=-0.098 Sum_probs=41.7
Q ss_pred hhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCC-C-HHHHHHHHhccCCCCccEEEEEec
Q 017726 69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGA-K-LDVLASKLAADTAHTIKAICIVHN 146 (367)
Q Consensus 69 gt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-d-~e~l~~~i~~~~~~~~~lv~~~~~ 146 (367)
.++++...+.....+|.+|+++............++..|+++..+++-..... + .+.+.+.+.+. .+...|+++++
T Consensus 142 ~ae~L~~~l~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~--~~~d~v~ftS~ 219 (286)
T 1jr2_A 142 NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQ--GVPASITFFSP 219 (286)
T ss_dssp SHHHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHH--CSCSEEEESSH
T ss_pred CHHHHHHHHHhcccCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhC--CCCCEEEEECh
Confidence 34555555544334577888887754333345666778888887775322111 1 23455555431 13467777664
No 264
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=38.17 E-value=2.3e+02 Score=25.69 Aligned_cols=97 Identities=10% Similarity=0.141 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHH
Q 017726 47 LLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDV 125 (367)
Q Consensus 47 ~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~ 125 (367)
....++..++..+.+.|+=.+.|+++....+......+..|+..+....... ...-++..|+.+..+. -|..+
T Consensus 89 ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~------~Da~~ 162 (464)
T 3m6w_A 89 SAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQ------APPRA 162 (464)
T ss_dssp TTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEEC------SCHHH
T ss_pred HHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEE------CCHHH
Confidence 3455667777776666777777777777666655544446666655222221 3344566787733322 15666
Q ss_pred HHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 126 LASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 126 l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+..... ...+.|++..|-+.+|.+
T Consensus 163 l~~~~~----~~FD~Il~D~PcSg~G~~ 186 (464)
T 3m6w_A 163 LAEAFG----TYFHRVLLDAPCSGEGMF 186 (464)
T ss_dssp HHHHHC----SCEEEEEEECCCCCGGGT
T ss_pred hhhhcc----ccCCEEEECCCcCCcccc
Confidence 554333 356889888888888865
No 265
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=37.98 E-value=1.6e+02 Score=25.29 Aligned_cols=73 Identities=15% Similarity=0.061 Sum_probs=46.5
Q ss_pred cCCCCCeEEEEeCCcch-----HH---HHHHHHHhCCceEEEeCCC--CCCC---C---HHHHHHHHhccCCCCccEEEE
Q 017726 80 TLSPGDRIISFLIGQFS-----LL---WIDQQQRLNFNVDVVESDW--GEGA---K---LDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~-----~~---~~~~~~~~g~~~~~v~~~~--~~~~---d---~e~l~~~i~~~~~~~~~lv~~ 143 (367)
.+++||+|-+..|+... .. .....+..|.+++.-+.-. .+.+ | .++|.+++.+ +.+|+|+.
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~D---p~i~aI~~ 84 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFND---SSVKAILT 84 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHC---TTEEEEEE
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhC---CCCCEEEE
Confidence 46899999998886432 11 2345567899887665322 1112 2 4567777765 67899988
Q ss_pred EecCCCcccccc
Q 017726 144 VHNETATGVTNN 155 (367)
Q Consensus 144 ~~~~n~tG~~~~ 155 (367)
+-..+-+-.+.|
T Consensus 85 ~rGG~g~~rlL~ 96 (327)
T 4h1h_A 85 VIGGFNSNQLLP 96 (327)
T ss_dssp SCCCSCGGGGGG
T ss_pred cCCchhHHHHhh
Confidence 776666666665
No 266
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=37.09 E-value=77 Score=26.77 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=45.3
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+. .+ ..-+++...|. .||.-++.+.+.++++. .++.=+=|
T Consensus 87 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~-~tg~~l~~~~~~~La~~--pnIvgiKd 161 (297)
T 2rfg_A 87 YAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI--DIPIIVYNIPP-RAVVDIKPETMARLAAL--PRIVGVKD 161 (297)
T ss_dssp HHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC--SSCEEEEECHH-HHSCCCCHHHHHHHHTS--TTEEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcc-ccCCCCCHHHHHHHHcC--CCEEEEEe
Confidence 3456677788776665555455565555443322 11 12244444443 58988999999999865 67766666
Q ss_pred eee
Q 017726 176 GVS 178 (367)
Q Consensus 176 ~~~ 178 (367)
.+.
T Consensus 162 s~g 164 (297)
T 2rfg_A 162 ATT 164 (297)
T ss_dssp CSC
T ss_pred CCC
Confidence 553
No 267
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=36.73 E-value=1.1e+02 Score=25.06 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=43.9
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
++++.|++.++-..+ ..+...|-+|++..-.. ......++..+.++..+..+-. |.+++++++++ .. .+.
T Consensus 29 ~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~i 102 (266)
T 3grp_A 29 KALVTGATGGIGEAIARCFHAQGAIVGLHGTRE--DKLKEIAADLGKDVFVFSANLS---DRKSIKQLAEVAEREM-EGI 102 (266)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHCSSEEEEECCTT---SHHHHHHHHHHHHHHH-TSC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCceEEEEeecC---CHHHHHHHHHHHHHHc-CCC
Confidence 344455666665433 44667788887765522 2233445556777777776533 45655555543 11 255
Q ss_pred cEEEEEecCCCcc
Q 017726 139 KAICIVHNETATG 151 (367)
Q Consensus 139 ~lv~~~~~~n~tG 151 (367)
++++-+......+
T Consensus 103 D~lvnnAg~~~~~ 115 (266)
T 3grp_A 103 DILVNNAGITRDG 115 (266)
T ss_dssp CEEEECCCCC---
T ss_pred CEEEECCCCCCCC
Confidence 6666555443333
No 268
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=36.71 E-value=1.5e+02 Score=23.84 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=44.3
Q ss_pred EEecCChhHHHHHH-HHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESA-LTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~-~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
+++ .|++.++-.. ...+...|-+|++..-.. ......++..+.++..+..+-. |.+++++.+++ .. .+.
T Consensus 9 vlV-TGas~gIG~a~a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~~-g~i 81 (247)
T 3rwb_A 9 ALV-TGAAQGIGKAIAARLAADGATVIVSDINA--EGAKAAAASIGKKARAIAADIS---DPGSVKALFAEIQALT-GGI 81 (247)
T ss_dssp EEE-ETTTSHHHHHHHHHHHHTTCEEEEECSCH--HHHHHHHHHHCTTEEECCCCTT---CHHHHHHHHHHHHHHH-SCC
T ss_pred EEE-ECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCceEEEEcCCC---CHHHHHHHHHHHHHHC-CCC
Confidence 444 4555555443 344566788888765522 2223344445777777665532 55655555543 11 256
Q ss_pred cEEEEEecCCCccc
Q 017726 139 KAICIVHNETATGV 152 (367)
Q Consensus 139 ~lv~~~~~~n~tG~ 152 (367)
++++-+....+.+.
T Consensus 82 d~lv~nAg~~~~~~ 95 (247)
T 3rwb_A 82 DILVNNASIVPFVA 95 (247)
T ss_dssp SEEEECCCCCCCCC
T ss_pred CEEEECCCCCCCCC
Confidence 77766655444443
No 269
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=36.43 E-value=1.5e+02 Score=25.42 Aligned_cols=73 Identities=16% Similarity=0.061 Sum_probs=46.8
Q ss_pred cCCCCCeEEEEeCCcchH-----HH---HHHHHHhCCceEEEeCCC--CCCC---C---HHHHHHHHhccCCCCccEEEE
Q 017726 80 TLSPGDRIISFLIGQFSL-----LW---IDQQQRLNFNVDVVESDW--GEGA---K---LDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~-----~~---~~~~~~~g~~~~~v~~~~--~~~~---d---~e~l~~~i~~~~~~~~~lv~~ 143 (367)
.+++||+|-+..|+.... .+ ....+..|.+++.-+.-. .+.+ | .++|.+++.+ +.+|+|+.
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~D---p~i~aI~~ 84 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRD---PNVKAILT 84 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHC---TTEEEEEE
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhC---CCCCEEEE
Confidence 468999999988865532 22 345566899988765322 1111 2 4567777765 57899988
Q ss_pred EecCCCcccccc
Q 017726 144 VHNETATGVTNN 155 (367)
Q Consensus 144 ~~~~n~tG~~~~ 155 (367)
+-..+-+-.+.|
T Consensus 85 ~rGG~g~~rlL~ 96 (331)
T 4e5s_A 85 TLGGYNSNGLLK 96 (331)
T ss_dssp SCCCSCGGGGGG
T ss_pred ccccccHHHHHh
Confidence 776666666665
No 270
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=36.26 E-value=35 Score=28.59 Aligned_cols=63 Identities=8% Similarity=-0.003 Sum_probs=40.3
Q ss_pred CCCeEEEEeCC-cch---HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 83 PGDRIISFLIG-QFS---LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 83 ~gd~vl~~~~~-~~~---~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
.|.+|+++.+. ..+ ..+...++..|+++..+|+-.-...+.+.+.+.+.+. .....|++++++
T Consensus 20 ~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~--~~~d~lifTS~n 86 (286)
T 1jr2_A 20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHP--EDYGGLIFTSPR 86 (286)
T ss_dssp --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCG--GGCSEEEECCHH
T ss_pred cCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCc--ccccEEEEeCHH
Confidence 35678888775 433 4456778889999998886432224566677776432 245788888764
No 271
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=36.11 E-value=1.6e+02 Score=23.57 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=44.5
Q ss_pred eEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEE
Q 017726 62 PFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI 141 (367)
Q Consensus 62 ~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv 141 (367)
.++++++|..|...+ ..++..|-.|.+.++... ......++..++.+ +.-+ ++.+++ ....+|
T Consensus 33 ~VLVVGgG~va~~ka-~~Ll~~GA~VtVvap~~~-~~l~~l~~~~~i~~--i~~~----~~~~dL---------~~adLV 95 (223)
T 3dfz_A 33 SVLVVGGGTIATRRI-KGFLQEGAAITVVAPTVS-AEINEWEAKGQLRV--KRKK----VGEEDL---------LNVFFI 95 (223)
T ss_dssp CEEEECCSHHHHHHH-HHHGGGCCCEEEECSSCC-HHHHHHHHTTSCEE--ECSC----CCGGGS---------SSCSEE
T ss_pred EEEEECCCHHHHHHH-HHHHHCCCEEEEECCCCC-HHHHHHHHcCCcEE--EECC----CCHhHh---------CCCCEE
Confidence 477778887666653 345556777777777533 22334444334433 3211 223332 133566
Q ss_pred EEEecCCCccccccHHHHHHHHHhcCCCcEEE-Eee
Q 017726 142 CIVHNETATGVTNNLSKVRKLLDEYRHPALFL-VDG 176 (367)
Q Consensus 142 ~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi-~D~ 176 (367)
+.+ ||...--..+.+.|+ .+++|- +|.
T Consensus 96 IaA-----T~d~~~N~~I~~~ak---~gi~VNvvD~ 123 (223)
T 3dfz_A 96 VVA-----TNDQAVNKFVKQHIK---NDQLVNMASS 123 (223)
T ss_dssp EEC-----CCCTHHHHHHHHHSC---TTCEEEC---
T ss_pred EEC-----CCCHHHHHHHHHHHh---CCCEEEEeCC
Confidence 654 333333455666664 466644 554
No 272
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=35.77 E-value=23 Score=29.21 Aligned_cols=63 Identities=8% Similarity=0.020 Sum_probs=39.3
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
.|.+|+++.+.. ...+...++..|+++..+|+-.-...|.+.+.+.+.+-. .....|++++++
T Consensus 7 ~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~-~~~d~iiftS~~ 69 (261)
T 1wcw_A 7 DAVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALA-QGVDLFLATTGV 69 (261)
T ss_dssp -CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHH-TCCSEEEECCHH
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhc-cCCCEEEEeCHH
Confidence 477899998864 555667788899998887754322225555555443210 135788888764
No 273
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=35.68 E-value=1.8e+02 Score=23.75 Aligned_cols=86 Identities=10% Similarity=-0.035 Sum_probs=44.3
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
++++.|++.++-..+ ..+...|-+|++..-...... .....+..+.++..+..+-. |.+++++.+++ .. .+
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~ 81 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVT---DRHSVAAFAQAAVDTW-GR 81 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTT---CHHHHHHHHHHHHHHH-SC
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCC---CHHHHHHHHHHHHHHc-CC
Confidence 344455666665444 345667888877655322211 22233344667777666532 45555555443 11 25
Q ss_pred ccEEEEEecCCCccc
Q 017726 138 IKAICIVHNETATGV 152 (367)
Q Consensus 138 ~~lv~~~~~~n~tG~ 152 (367)
.++++-+..-.+.+.
T Consensus 82 iD~lVnnAG~~~~~~ 96 (264)
T 3tfo_A 82 IDVLVNNAGVMPLSP 96 (264)
T ss_dssp CCEEEECCCCCCCCC
T ss_pred CCEEEECCCCCCCCC
Confidence 667766654444443
No 274
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=35.45 E-value=36 Score=27.60 Aligned_cols=61 Identities=15% Similarity=0.037 Sum_probs=31.0
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC--CCCHHHHHHHHhccCCCCccEEEEEec
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVHN 146 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~e~l~~~i~~~~~~~~~lv~~~~~ 146 (367)
+|.+|+++.............+..|+++..+++-... ..+.+.+.+.+.+ .+...|+++++
T Consensus 119 ~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~---~~~d~v~ftS~ 181 (240)
T 3mw8_A 119 SGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQS---FGIDTIVVTSG 181 (240)
T ss_dssp TTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHH---HTCCEEECCSH
T ss_pred CCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHh---CCCCEEEEcCH
Confidence 5667777665433333445556667777766643211 1234555555443 13456665543
No 275
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=35.23 E-value=1.7e+02 Score=23.31 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=44.1
Q ss_pred EecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 64 LIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 64 ~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
++..|++.++-..+ ..+...|-+|++..-...... .....+..+.++..+..+-. |.+.+++.+++ .. .+.
T Consensus 8 vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~-~~i 83 (247)
T 3lyl_A 8 ALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNIS---DIESIQNFFAEIKAEN-LAI 83 (247)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHTT-CCC
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCC---CHHHHHHHHHHHHHHc-CCC
Confidence 44455555554433 345667878877655322211 22333445677777776533 55665555543 21 356
Q ss_pred cEEEEEecCCCcc
Q 017726 139 KAICIVHNETATG 151 (367)
Q Consensus 139 ~lv~~~~~~n~tG 151 (367)
+.++.+....+.+
T Consensus 84 d~li~~Ag~~~~~ 96 (247)
T 3lyl_A 84 DILVNNAGITRDN 96 (247)
T ss_dssp SEEEECCCCCCCC
T ss_pred CEEEECCCCCCCC
Confidence 7776665444333
No 276
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=34.59 E-value=30 Score=28.71 Aligned_cols=63 Identities=10% Similarity=-0.120 Sum_probs=42.2
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCC-CCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG-AKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
-|.+|+++.|...+..+...++..|+++..+|+-.-.. .+.+.+.+.+.+- ...+.|++++++
T Consensus 13 ~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l--~~~d~vifTS~n 76 (269)
T 3re1_A 13 SAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFEL--LNYSAVIVVSKP 76 (269)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTG--GGSSEEEECSHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhc--cCCCEEEEECHH
Confidence 47789999996666566677888999998887643221 2345566665532 245788888753
No 277
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=34.40 E-value=61 Score=23.84 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH-HHHHHHhc--CCCcE-EEEeeeec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK-VRKLLDEY--RHPAL-FLVDGVSS 179 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~-i~~~~~~~--~~~~~-vi~D~~~~ 179 (367)
...+.+.+.+.+++. ++..|++-.|-|..|..-+..+ +.+++++. ..++. .++||-.+
T Consensus 38 ~~~~~~~l~~li~e~---~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERlT 99 (138)
T 1nu0_A 38 GTPDWNIIERLLKEW---QPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLS 99 (138)
T ss_dssp TEECHHHHHHHHHHH---CCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_pred cchHHHHHHHHHHHc---CCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 345789999999973 5788999999999998876432 33333331 14554 45898765
No 278
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=34.24 E-value=63 Score=24.15 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH----HHH-HHHHhcCCCcE-EEEeeeec
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS----KVR-KLLDEYRHPAL-FLVDGVSS 179 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~----~i~-~~~~~~~~~~~-vi~D~~~~ 179 (367)
..+.+.|.+.+++ .++..|++-.|-|..|+.-+.. .+. .++++ .++. +++||.++
T Consensus 41 ~~~~~~l~~li~~---~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~--~~lpV~~vDEr~T 101 (150)
T 1vhx_A 41 DYGLSRLSELIKD---YTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETT--YNVPVVLWDERLT 101 (150)
T ss_dssp BCCHHHHHHHHTT---SEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHH--HCSCEEEECCSSC
T ss_pred HHHHHHHHHHHHH---cCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHh--hCCCEEEecCCCC
Confidence 3478999999997 4688999999988888775422 333 33344 4665 45898866
No 279
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=33.97 E-value=2.3e+02 Score=24.38 Aligned_cols=73 Identities=10% Similarity=-0.097 Sum_probs=46.5
Q ss_pred cCCCCCeEEEEeCCcchH-----H---HHHHHHHhCCceEEEeCCCC--CCC---C---HHHHHHHHhccCCCCccEEEE
Q 017726 80 TLSPGDRIISFLIGQFSL-----L---WIDQQQRLNFNVDVVESDWG--EGA---K---LDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~-----~---~~~~~~~~g~~~~~v~~~~~--~~~---d---~e~l~~~i~~~~~~~~~lv~~ 143 (367)
.+++||+|-+..|+.... . .....+..|.+++.-+.-.. +.+ | .++|.+++.+ +.+|+|+.
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~D---p~i~aI~~ 85 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRN---PNVSCIMS 85 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHC---TTEEEEEE
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhC---CCCCEEEE
Confidence 468999999998865431 1 23445668999887543221 111 2 3567777764 57899988
Q ss_pred EecCCCcccccc
Q 017726 144 VHNETATGVTNN 155 (367)
Q Consensus 144 ~~~~n~tG~~~~ 155 (367)
.-..+-+-.+.|
T Consensus 86 ~rGG~g~~rlL~ 97 (336)
T 3sr3_A 86 TIGGMNSNSLLP 97 (336)
T ss_dssp SCCCSCGGGGGG
T ss_pred ccccccHHHHhh
Confidence 776666666665
No 280
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=33.80 E-value=2.1e+02 Score=23.89 Aligned_cols=77 Identities=12% Similarity=0.032 Sum_probs=43.5
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
++..+++..+ .|++ +++.+|++...+.- ..+..+++.++.++++.-...+++.|+..... +-+....
T Consensus 178 ~~~~~v~~H~-af~Y----f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~-------~~~~~~~ 245 (286)
T 3gi1_A 178 RSKTFVTQHT-AFSY----LAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNV-------NPKIAHA 245 (286)
T ss_dssp SCCEEEEEES-CCHH----HHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTS-------CTHHHHH
T ss_pred CCCEEEEECC-chHH----HHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------ChHHHHH
Confidence 5667776655 4443 26789999877643 23445566655555443111467777765432 2244456
Q ss_pred HHHhcCCCcEEE
Q 017726 162 LLDEYRHPALFL 173 (367)
Q Consensus 162 ~~~~~~~~~~vi 173 (367)
++++ .|+.++
T Consensus 246 la~~--~g~~v~ 255 (286)
T 3gi1_A 246 IAKS--TGAKVK 255 (286)
T ss_dssp HHHT--TTCEEE
T ss_pred HHHH--hCCeEE
Confidence 6777 788765
No 281
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=33.46 E-value=2e+02 Score=23.61 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=45.3
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
++++.|++.++-..+ ..+...|-+|++..-.. .......+..+.++..+..+-. |.+++++++++ .. .+.
T Consensus 29 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~i 102 (277)
T 4dqx_A 29 VCIVTGGGSGIGRATAELFAKNGAYVVVADVNE--DAAVRVANEIGSKAFGVRVDVS---SAKDAESMVEKTTAKW-GRV 102 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHCTTEEEEECCTT---CHHHHHHHHHHHHHHH-SCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCceEEEEecCC---CHHHHHHHHHHHHHHc-CCC
Confidence 344455566665433 44667788888776532 2223344445777777766532 55666555543 11 255
Q ss_pred cEEEEEecCCCccc
Q 017726 139 KAICIVHNETATGV 152 (367)
Q Consensus 139 ~lv~~~~~~n~tG~ 152 (367)
++++-+......+.
T Consensus 103 D~lv~nAg~~~~~~ 116 (277)
T 4dqx_A 103 DVLVNNAGFGTTGN 116 (277)
T ss_dssp CEEEECCCCCCCBC
T ss_pred CEEEECCCcCCCCC
Confidence 67766655444443
No 282
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=33.10 E-value=1.3e+02 Score=25.77 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=7.8
Q ss_pred CCccEEEEEecCC
Q 017726 136 HTIKAICIVHNET 148 (367)
Q Consensus 136 ~~~~lv~~~~~~n 148 (367)
+.+++|++++|+.
T Consensus 85 ~~iDaV~I~tP~~ 97 (350)
T 4had_A 85 DVIDAVYIPLPTS 97 (350)
T ss_dssp SSCSEEEECSCGG
T ss_pred CCCCEEEEeCCCc
Confidence 3456777766653
No 283
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=33.03 E-value=2e+02 Score=23.42 Aligned_cols=85 Identities=6% Similarity=0.001 Sum_probs=43.9
Q ss_pred EEecCChhHHHHHH-HHccCCCCCeEEEEeCCcchH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESA-LTNTLSPGDRIISFLIGQFSL--LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~-~~~~~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
.++..||+.++-.. ...+.+.|-+|++..-..... ......+..+.++..+..+-. |.+++++.+++ .. .
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~~-g 106 (271)
T 4iin_A 31 NVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAA---SESDFIEAIQTIVQSD-G 106 (271)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHHH-S
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCC---CHHHHHHHHHHHHHhc-C
Confidence 34445555555443 344566787877765422221 122334455777777776533 45555555443 11 2
Q ss_pred CccEEEEEecCCCcc
Q 017726 137 TIKAICIVHNETATG 151 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG 151 (367)
+.+.++.+......+
T Consensus 107 ~id~li~nAg~~~~~ 121 (271)
T 4iin_A 107 GLSYLVNNAGVVRDK 121 (271)
T ss_dssp SCCEEEECCCCCCCC
T ss_pred CCCEEEECCCcCCCc
Confidence 566776665443333
No 284
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=32.90 E-value=2e+02 Score=23.41 Aligned_cols=86 Identities=7% Similarity=0.029 Sum_probs=44.8
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSL--LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
++++.|++.++-..+ ..+...|-+|++........ ......+..|.++..+..+-. |.+++++.+++ .. .
T Consensus 20 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~~-g 95 (270)
T 3is3_A 20 VALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIR---QVPEIVKLFDQAVAHF-G 95 (270)
T ss_dssp EEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT---SHHHHHHHHHHHHHHH-S
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCC---CHHHHHHHHHHHHHHc-C
Confidence 444455666665433 44667788887754322221 122334445777777776533 55666555543 11 2
Q ss_pred CccEEEEEecCCCccc
Q 017726 137 TIKAICIVHNETATGV 152 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG~ 152 (367)
+.++++-+......+.
T Consensus 96 ~id~lvnnAg~~~~~~ 111 (270)
T 3is3_A 96 HLDIAVSNSGVVSFGH 111 (270)
T ss_dssp CCCEEECCCCCCCCCC
T ss_pred CCCEEEECCCCCCCCC
Confidence 4566665544344443
No 285
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=32.88 E-value=2e+02 Score=23.54 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=43.1
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
+++ .|++.++-..+ ..+.+.|-+|++..-...... .....+..+.++..+..+-. |.+++++.+++ .. .+
T Consensus 35 ~lV-TGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~---d~~~v~~~~~~~~~~~-g~ 109 (276)
T 3r1i_A 35 ALI-TGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVT---QPDQVRGMLDQMTGEL-GG 109 (276)
T ss_dssp EEE-ESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTT---CHHHHHHHHHHHHHHH-SC
T ss_pred EEE-eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC---CHHHHHHHHHHHHHHc-CC
Confidence 444 45555664433 445667878777655322221 22333445666666665532 55666555543 11 25
Q ss_pred ccEEEEEecCCCcc
Q 017726 138 IKAICIVHNETATG 151 (367)
Q Consensus 138 ~~lv~~~~~~n~tG 151 (367)
.++++-+......+
T Consensus 110 iD~lvnnAg~~~~~ 123 (276)
T 3r1i_A 110 IDIAVCNAGIVSVQ 123 (276)
T ss_dssp CSEEEECCCCCCCC
T ss_pred CCEEEECCCCCCCC
Confidence 66776655444433
No 286
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=32.61 E-value=2.1e+02 Score=23.51 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=43.9
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
++++.|++.++-..+ ..+...|-+|++..-...... .....+..+.++..+..+-. |.+++++++++ .. .+
T Consensus 26 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~ 101 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVT---STDEVHAAVAAAVERF-GP 101 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTT---CHHHHHHHHHHHHHHH-CS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCC---CHHHHHHHHHHHHHHc-CC
Confidence 344455555664433 345667888877655322111 22223334667777766533 55665555543 11 25
Q ss_pred ccEEEEEecCCCccc
Q 017726 138 IKAICIVHNETATGV 152 (367)
Q Consensus 138 ~~lv~~~~~~n~tG~ 152 (367)
.++++-+......+.
T Consensus 102 id~lv~nAg~~~~~~ 116 (279)
T 3sju_A 102 IGILVNSAGRNGGGE 116 (279)
T ss_dssp CCEEEECCCCCCCSC
T ss_pred CcEEEECCCCCCCCC
Confidence 566666554444443
No 287
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=32.55 E-value=89 Score=22.55 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCH-HHHHHHHhccCCCCccEEEEEecCCCccccccH-------HHHHHHHHhcCCCcE
Q 017726 121 AKL-DVLASKLAADTAHTIKAICIVHNETATGVTNNL-------SKVRKLLDEYRHPAL 171 (367)
Q Consensus 121 ~d~-e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~-------~~i~~~~~~~~~~~~ 171 (367)
+++ |-+..++.. +...++++|.| |+|...|- +++.+.++- -|+-
T Consensus 54 v~pRei~~~Al~~----~A~~vIl~HNH-PSG~~~PS~~D~~~T~~l~~a~~l--l~I~ 105 (126)
T 2qlc_A 54 IHPREIFKAAIRE----SAHSIILVHNH-PSGDVQPSNADKQVTSILKKAGDL--LQIE 105 (126)
T ss_dssp CCHHHHHHHHHHT----TCSEEEEEEEC-SSSCCSCCHHHHHHHHHHHHHHHH--HTCE
T ss_pred ecHHHHHHHHHHc----CCcEEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHH--CCCe
Confidence 344 456666763 44777777754 88888762 235566655 4554
No 288
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=32.53 E-value=33 Score=28.14 Aligned_cols=63 Identities=6% Similarity=-0.089 Sum_probs=40.7
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCC-CCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG-AKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
.|.+|+++.|...+..+...++..|+++..+|+-.-.. .+.+.+.+.+.+- ...+.|++++++
T Consensus 5 ~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l--~~~d~vifTS~~ 68 (254)
T 4es6_A 5 SGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDL--DRYCAVVVVSKP 68 (254)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTG--GGCSEEEECSHH
T ss_pred CCCEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhc--cCCCEEEEECHH
Confidence 47789999986555556677888999998887643211 1334666665432 245788888753
No 289
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=31.96 E-value=29 Score=31.38 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=27.6
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
.++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 56 ~idp~~Gt~~dfk~Lv~~aH~--~Gi~VilD~V~ 87 (448)
T 1g94_A 56 ELQSRGGNRAQFIDMVNRCSA--AGVDIYVDTLI 87 (448)
T ss_dssp CSCBTTBCHHHHHHHHHHHHH--TTCEEEEEEEC
T ss_pred ccCCCCCCHHHHHHHHHHHHH--CCCEEEEEEee
Confidence 345578999999999999999 99999999763
No 290
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=31.18 E-value=2.1e+02 Score=23.43 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=43.5
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
++++.|++.++-..+ ..+...|-+|++..-...... .....+..|.++..+..+-. |.+++++.+++ .. .+
T Consensus 28 ~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~ 103 (271)
T 4ibo_A 28 TALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVT---SESEIIEAFARLDEQG-ID 103 (271)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTT---CHHHHHHHHHHHHHHT-CC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC---CHHHHHHHHHHHHHHC-CC
Confidence 344455666664433 446677888877654222111 22223345667776665532 55666555543 11 25
Q ss_pred ccEEEEEecCCCcc
Q 017726 138 IKAICIVHNETATG 151 (367)
Q Consensus 138 ~~lv~~~~~~n~tG 151 (367)
.++++-+..-...+
T Consensus 104 iD~lv~nAg~~~~~ 117 (271)
T 4ibo_A 104 VDILVNNAGIQFRK 117 (271)
T ss_dssp CCEEEECCCCCCCC
T ss_pred CCEEEECCCCCCCC
Confidence 66666655433333
No 291
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=31.17 E-value=2.1e+02 Score=23.33 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=46.7
Q ss_pred EEecCChhHHHHHH-HHccCCCCCeEEEEeCCcc----------hHH---HHHHHHHhCCceEEEeCCCCCCCCHHHHHH
Q 017726 63 FLIPTTGTGAWESA-LTNTLSPGDRIISFLIGQF----------SLL---WIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128 (367)
Q Consensus 63 v~~~~ggt~al~~~-~~~~~~~gd~vl~~~~~~~----------~~~---~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~ 128 (367)
++++.|++.++-.. ...+...|-+|++.+-... ... .....+..+.++..+..+-. |.+++++
T Consensus 12 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~v~~ 88 (287)
T 3pxx_A 12 VVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVR---DRAAVSR 88 (287)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTT---CHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCC---CHHHHHH
Confidence 34445555555443 3446667888877653200 111 12223445667777766533 4565555
Q ss_pred HHhc---cCCCCccEEEEEecCCCccccccHHHHHHH
Q 017726 129 KLAA---DTAHTIKAICIVHNETATGVTNNLSKVRKL 162 (367)
Q Consensus 129 ~i~~---~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~ 162 (367)
.+++ .. .+.++++-+....+.+...+.+.+.+.
T Consensus 89 ~~~~~~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~ 124 (287)
T 3pxx_A 89 ELANAVAEF-GKLDVVVANAGICPLGAHLPVQAFADA 124 (287)
T ss_dssp HHHHHHHHH-SCCCEEEECCCCCCCCTTCCTHHHHHH
T ss_pred HHHHHHHHc-CCCCEEEECCCcCcccCcCCHHHHHHH
Confidence 5443 11 255666655544433322344444433
No 292
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=30.95 E-value=2e+02 Score=23.58 Aligned_cols=83 Identities=8% Similarity=-0.007 Sum_probs=43.5
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
++++.|++.++-..+ ..+...|-+|++..-.. ......++..+.++..+..+-. |.+++++.+++ .. .+.
T Consensus 31 ~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~i 104 (277)
T 3gvc_A 31 VAIVTGAGAGIGLAVARRLADEGCHVLCADIDG--DAADAAATKIGCGAAACRVDVS---DEQQIIAMVDACVAAF-GGV 104 (277)
T ss_dssp EEEETTTTSTHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHCSSCEEEECCTT---CHHHHHHHHHHHHHHH-SSC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHcCCcceEEEecCC---CHHHHHHHHHHHHHHc-CCC
Confidence 344455565554433 34566788888776532 2223334445666666665532 55655555443 11 256
Q ss_pred cEEEEEecCCCcc
Q 017726 139 KAICIVHNETATG 151 (367)
Q Consensus 139 ~lv~~~~~~n~tG 151 (367)
++++-+......+
T Consensus 105 D~lvnnAg~~~~~ 117 (277)
T 3gvc_A 105 DKLVANAGVVHLA 117 (277)
T ss_dssp CEEEECCCCCCCB
T ss_pred CEEEECCCCCCCC
Confidence 7776655444333
No 293
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=30.71 E-value=2.4e+02 Score=23.93 Aligned_cols=77 Identities=9% Similarity=0.108 Sum_probs=45.8
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC-CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~-~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+.-.. -..-+++...| ..||.-++.+.+.+++++. .++.-+=|.+
T Consensus 109 la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P-~~tg~~l~~~~~~~La~~~-pnIvgiKdss 186 (315)
T 3si9_A 109 LAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIP-SRSVIDMAVETMRDLCRDF-KNIIGVKDAT 186 (315)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH-HHHSCCCCHHHHHHHHHHC-TTEEEEEECS
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCc-hhhCCCCCHHHHHHHHhhC-CCEEEEEeCC
Confidence 4456777888877665555555665554444332100 11223444333 4689999999999999842 5776666754
No 294
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=30.57 E-value=1e+02 Score=25.58 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=43.4
Q ss_pred chHHHHHHHHHhCCceE-EEeCCCCC-------------CCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-----c
Q 017726 95 FSLLWIDQQQRLNFNVD-VVESDWGE-------------GAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-----N 155 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~-~v~~~~~~-------------~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-----~ 155 (367)
++..+...++..|.++. .+|+++.. ..+.+++++.+...-..=|.++- .||-+|..+ .
T Consensus 67 ~~~~~a~~A~~~G~EvllHlPMep~~~p~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~G---vnNHmGS~~T~~~~~ 143 (261)
T 2qv5_A 67 SLQRWMQDARREGHEILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTG---VMNYLGGRFLAEQSA 143 (261)
T ss_dssp SHHHHHHHHHHHTCCEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCCCCSE---EEEEECTTGGGCHHH
T ss_pred CHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCcCcCcCCCCHHHHHHHHHHHHHHCCCcEE---EecccccchhcCHHH
Confidence 33346677777887654 45655322 14567777766642101223333 344566544 3
Q ss_pred HHHHHHHHHhcCCCcEEEEeee
Q 017726 156 LSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
++.+.+.+++ +|.+++-+.+
T Consensus 144 M~~vm~~L~~--~gL~FlDS~T 163 (261)
T 2qv5_A 144 LEPVMRDIGK--RGLLFLDDGS 163 (261)
T ss_dssp HHHHHHHHHH--TTCEEEECSC
T ss_pred HHHHHHHHHH--CCCEEEcCCC
Confidence 6777888888 8766554433
No 295
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=30.55 E-value=60 Score=26.62 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHHHHHHhCCce-EEEeCCCCC-------------CCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-----cHHHH
Q 017726 99 WIDQQQRLNFNV-DVVESDWGE-------------GAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-----NLSKV 159 (367)
Q Consensus 99 ~~~~~~~~g~~~-~~v~~~~~~-------------~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-----~~~~i 159 (367)
+...++..|.++ ..+|+++.+ ..+.++++..+...-..=|.++-+ +|-+|..+ .++.+
T Consensus 44 ~a~~A~~~G~EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~Gv---nNHmGS~~T~~~~~m~~v 120 (245)
T 2nly_A 44 QAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGL---NNHMGSKIVENEKIMRAI 120 (245)
T ss_dssp HHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEE---EEEECTTGGGCHHHHHHH
T ss_pred HHHHHHHCCCEEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEE---ecccccchhcCHHHHHHH
Confidence 556777788763 445654321 245666666655421011234433 34466543 36778
Q ss_pred HHHHHhcCCCcEEEEe
Q 017726 160 RKLLDEYRHPALFLVD 175 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D 175 (367)
.+.+++ +|.+ ++|
T Consensus 121 m~~l~~--~gL~-fvD 133 (245)
T 2nly_A 121 LEVVKE--KNAF-IID 133 (245)
T ss_dssp HHHHHH--TTCE-EEE
T ss_pred HHHHHH--CCCE-EEc
Confidence 888888 8855 555
No 296
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=30.00 E-value=1.5e+02 Score=27.87 Aligned_cols=84 Identities=10% Similarity=0.061 Sum_probs=53.5
Q ss_pred CCeEEEEeCC--cchH---HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH
Q 017726 84 GDRIISFLIG--QFSL---LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK 158 (367)
Q Consensus 84 gd~vl~~~~~--~~~~---~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~ 158 (367)
+.+|++..++ .+.. .....++..|.+++.+..+ +.++++.+++.+ .++++|.++... +.....+..
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~----vP~e~iv~aa~~---~~~diVgLS~l~--t~~~~~m~~ 168 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVM----VPAEKILRTAKE---VNADLIGLSGLI--TPSLDEMVN 168 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSS----BCHHHHHHHHHH---HTCSEEEEECCS--THHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCC----CCHHHHHHHHHH---cCCCEEEEEecC--CCCHHHHHH
Confidence 3456665442 2221 2446677789988877544 568888888876 367899888744 344556777
Q ss_pred HHHHHHhcCCCcEEEEee
Q 017726 159 VRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~ 176 (367)
+.+.+++...++.|++=+
T Consensus 169 ~i~~Lr~~g~~i~ViVGG 186 (579)
T 3bul_A 169 VAKEMERQGFTIPLLIGG 186 (579)
T ss_dssp HHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHcCCCCeEEEEc
Confidence 777777733457776643
No 297
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=29.69 E-value=2.4e+02 Score=23.53 Aligned_cols=75 Identities=9% Similarity=0.053 Sum_probs=44.3
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+. .+ ..-+++...|. .||.-++.+.+.+++++. .++.=+=|
T Consensus 87 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiilYn~P~-~tg~~l~~~~~~~La~~~-pnivgiK~ 162 (289)
T 2yxg_A 87 LSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESI--NLPIVLYNVPS-RTAVNLEPKTVKLLAEEY-SNISAVKE 162 (289)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEEECHH-HHSCCCCHHHHHHHHHHC-TTEEEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcc-ccCcCCCHHHHHHHHHhC-CCEEEEEe
Confidence 4456677788766665555455565555443322 11 12244444443 589889999999999442 56665656
Q ss_pred ee
Q 017726 176 GV 177 (367)
Q Consensus 176 ~~ 177 (367)
.+
T Consensus 163 s~ 164 (289)
T 2yxg_A 163 AN 164 (289)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 298
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=29.26 E-value=40 Score=30.34 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=27.2
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
.++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 61 ~idp~~Gt~~df~~lv~~aH~--~Gi~VilD~V~ 92 (441)
T 1lwj_A 61 SFKAEYGSEREFKEMIEAFHD--SGIKVVLDLPI 92 (441)
T ss_dssp EECTTTCCHHHHHHHHHHHHH--TTCEEEEEECT
T ss_pred ccCcccCCHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 345567888999999999999 99999999763
No 299
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=29.24 E-value=2.4e+02 Score=23.59 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=46.2
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC-CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~-~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+.-.. -..-+++...| ..||.-++.+.+.++++. .++.=+=|.+
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P-~~tg~~l~~~~~~~La~~--pnivgiK~s~ 164 (291)
T 3a5f_A 88 MSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVP-GRTGLNITPGTLKELCED--KNIVAVXEAS 164 (291)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECH-HHHSCCCCHHHHHHHTTS--TTEEEEEECS
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc-cccCCCCCHHHHHHHHcC--CCEEEEeCCC
Confidence 3455677788766665555555677776665544210 11223444433 358988999999999865 6776666654
No 300
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=29.24 E-value=2.1e+02 Score=23.80 Aligned_cols=124 Identities=11% Similarity=-0.051 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCCceEEecCChhHHHH-------HHHHccCCCCCeEEEEeCCcchHH----HHHHHHHhCCceEEEe
Q 017726 46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWE-------SALTNTLSPGDRIISFLIGQFSLL----WIDQQQRLNFNVDVVE 114 (367)
Q Consensus 46 ~~~~~la~~~~~~~~~~v~~~~ggt~al~-------~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~~~g~~~~~v~ 114 (367)
.+++.+..++.. - +.+++.++..|+.. .++....+ .-.|++-.. ..+.. ..+.++..|+.-.-+-
T Consensus 20 ~l~~lv~~li~~-v-~gl~v~GttGE~~~Ls~~Er~~v~~~~~~-rvpviaGvg-~~~t~~ai~la~~A~~~Gadavlv~ 95 (283)
T 2pcq_A 20 AFRELAQALEPL-V-DGLLVYGSNGEGVHLTPEERARGLRALRP-RKPFLVGLM-EETLPQAEGALLEAKAAGAMALLAT 95 (283)
T ss_dssp HHHHHHHHHGGG-S-SCCEETCTTTTGGGSCHHHHHHHHHTCCC-SSCCEEEEC-CSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHhh-C-CEEEECCcCcCchhcCHHHHHHHHHHHHh-CCcEEEeCC-CCCHHHHHHHHHHHHhcCCCEEEec
Confidence 455555555544 3 22444333334433 23344444 334554433 23321 4456677888876665
Q ss_pred CCCCCCC-CHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 115 SDWGEGA-KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 115 ~~~~~~~-d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
.+.-+.. +.+.+.+-.+.-. +..-+++...| ..||.-++.+.+.++++. .++.-+=|.+
T Consensus 96 ~P~y~~~~~~~~l~~~f~~va-~~lPiilYn~P-~~tg~~l~~~~~~~La~~--pnivgiKdss 155 (283)
T 2pcq_A 96 PPRYYHGSLGAGLLRYYEALA-EKMPLFLYHVP-QNTKVDLPLEAVEALAPH--PNVLGIKDSS 155 (283)
T ss_dssp CCCTTGGGTTTHHHHHHHHHH-HHSCEEEEECH-HHHCCCCCHHHHHHHTTS--TTEEEEEECS
T ss_pred CCcCCCCCCHHHHHHHHHHHh-cCCCEEEEeCc-cccCcCCCHHHHHHHhcC--CCEEEEEECC
Confidence 4544444 4444433322211 11123444433 358988999999999875 6777777765
No 301
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=29.17 E-value=26 Score=29.46 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=38.3
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
.|.+|+++.+.. ...+...++..|+++..+|+-.-...|.+.+.+.+.+-. .....|++++++
T Consensus 32 ~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~-~~~d~lifTS~n 94 (286)
T 3d8t_A 32 FTMRIAYAGLRR-KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELA-QGVDLFLATTGV 94 (286)
T ss_dssp -CCEEEECCSSC-HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHT-TCCSEEEECCHH
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhc-cCCCEEEEECHH
Confidence 477899998865 555667778889998887753221113344544443210 135788888764
No 302
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=28.85 E-value=37 Score=31.05 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=26.5
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
++...|+..+++++++.||+ +|+.||+|.+
T Consensus 71 id~~~Gt~~df~~lv~~aH~--~Gi~VilD~V 100 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHS--RNVQVYGDVV 100 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHH--CCCEEEEEEc
Confidence 45567888999999999999 9999999976
No 303
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=28.61 E-value=2.6e+02 Score=23.38 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=42.2
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+. .+ ..-+++...|. .||.-++.+.+.+++++. .++.-+=|
T Consensus 87 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~-~tg~~l~~~~~~~La~~~-pnivgiKd 162 (294)
T 2ehh_A 87 LTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV--DIPIIIYNIPS-RTCVEISVDTMFKLASEC-ENIVASKE 162 (294)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEEECHH-HHSCCCCHHHHHHHHHHC-TTEEEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCc-ccCcCCCHHHHHHHHhhC-CCEEEEEe
Confidence 3455666787766555454445565554433322 11 12234444333 588888889899998442 46655556
Q ss_pred ee
Q 017726 176 GV 177 (367)
Q Consensus 176 ~~ 177 (367)
.+
T Consensus 163 s~ 164 (294)
T 2ehh_A 163 ST 164 (294)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 304
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=28.59 E-value=1.9e+02 Score=24.35 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=44.9
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+. .+ ..-+++...| ..||.-++.+.+.++++. .++.-+=|
T Consensus 103 la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilYn~P-~~tg~~l~~~~~~~La~~--pnIvgiKd 177 (304)
T 3cpr_A 103 LAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT--EVPICLYDIP-GRSGIPIESDTMRRLSEL--PTILAVXD 177 (304)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEEECH-HHHSSCCCHHHHHHHTTS--TTEEEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCc-cccCcCCCHHHHHHHHcC--CCEEEEec
Confidence 4456677888866665554455665555443322 11 1123333333 357988899999999865 67777767
Q ss_pred ee
Q 017726 176 GV 177 (367)
Q Consensus 176 ~~ 177 (367)
.+
T Consensus 178 ss 179 (304)
T 3cpr_A 178 AK 179 (304)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 305
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=28.55 E-value=2.5e+02 Score=23.81 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
++..+++..+ .|++ +++.+|++...+.. ..+..+++.++.++++.-...+++.|+.... .+-+.+..
T Consensus 189 ~~~~~v~~H~-af~Y----fa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~-------~~~~~~~~ 256 (312)
T 2o1e_A 189 EKKEFITQHT-AFGY----LAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEI-------ASSKVADT 256 (312)
T ss_dssp SCCEEEESSC-TTHH----HHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSC-------CCHHHHHH
T ss_pred CCCEEEEECC-chHH----HHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-------CChHHHHH
Confidence 5666665544 3443 36788998776532 2344567777777665432246677765432 23455666
Q ss_pred HHHhcCCCcEEE
Q 017726 162 LLDEYRHPALFL 173 (367)
Q Consensus 162 ~~~~~~~~~~vi 173 (367)
++++ .|+.++
T Consensus 257 ia~e--~g~~v~ 266 (312)
T 2o1e_A 257 LASE--IGAKTE 266 (312)
T ss_dssp HHHH--TCCEEE
T ss_pred HHHH--hCCcEE
Confidence 7787 777653
No 306
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=28.53 E-value=3.3e+02 Score=24.52 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhcCC--------CCceEEecC-Ch---hHHHHHHHHccCCCCCeEEEEeCCcchHH----HHHHHH
Q 017726 41 PALTKTLLEDIKKIFKTT--------SGTPFLIPT-TG---TGAWESALTNTLSPGDRIISFLIGQFSLL----WIDQQQ 104 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~--------~~~~v~~~~-gg---t~al~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~ 104 (367)
......+++.+.++++.. .+..+++++ +| |.....+...+...|.+|++.+...+... ....++
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 455667788888888742 133333333 22 22222233334456777766655433221 223344
Q ss_pred HhCCceEEEeCCCCCCCCHHHH-HHHHhccCCCCccEEEEEecCCCc---cccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 105 RLNFNVDVVESDWGEGAKLDVL-ASKLAADTAHTIKAICIVHNETAT---GVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 105 ~~g~~~~~v~~~~~~~~d~e~l-~~~i~~~~~~~~~lv~~~~~~n~t---G~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
..|+++..... ..|+.++ .+.+..-.....++|++.++.... .....+..+.+..+ ++.+++++|+..+
T Consensus 153 ~~gvpv~~~~~----~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~--pd~vlLVvDA~~g 225 (443)
T 3dm5_A 153 RYHIEVFGNPQ----EKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIH--PHEVILVIDGTIG 225 (443)
T ss_dssp GGTCEEECCTT----CCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEEGGGG
T ss_pred hcCCcEEecCC----CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhc--CceEEEEEeCCCc
Confidence 55655443221 1244332 222221100246889988763211 01112333333333 3678899998753
No 307
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=28.48 E-value=2e+02 Score=23.17 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=40.7
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
++++.|++.++-..+ ..+...|-+|++..-...... .....+..+.++..+..+-. |.+++++++++ .. .+
T Consensus 8 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~~-g~ 83 (257)
T 3imf_A 8 VVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVR---NTDDIQKMIEQIDEKF-GR 83 (257)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTT---CHHHHHHHHHHHHHHH-SC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC---CHHHHHHHHHHHHHHc-CC
Confidence 344455666665443 445667888877655222111 11122223556666665532 45555555543 11 24
Q ss_pred ccEEEEEecCC
Q 017726 138 IKAICIVHNET 148 (367)
Q Consensus 138 ~~lv~~~~~~n 148 (367)
.++++-+....
T Consensus 84 id~lv~nAg~~ 94 (257)
T 3imf_A 84 IDILINNAAGN 94 (257)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 56666554433
No 308
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=28.25 E-value=39 Score=30.84 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=26.7
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 73 idp~~Gt~~df~~lv~~aH~--~Gi~VilD~V~ 103 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKS--NDINVYGDVVM 103 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred cCCCCCCHHHHHHHHHHHHH--CCCEEEEEEcc
Confidence 44567888899999999999 99999999763
No 309
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=28.24 E-value=39 Score=30.89 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=26.9
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 75 idp~~Gt~~df~~Lv~~aH~--~Gi~VilD~V~ 105 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKN--NGIQVYGDVVM 105 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred cCCCCCCHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 45567888999999999999 99999999763
No 310
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=28.20 E-value=2.7e+02 Score=23.37 Aligned_cols=76 Identities=7% Similarity=-0.007 Sum_probs=43.4
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC-CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~-~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+.-.. -..-+++...| ..||.-++.+.+.++++- .++.-+=|.+
T Consensus 94 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P-~~tg~~l~~~~~~~La~~--pnivgiKdss 170 (297)
T 3flu_A 94 LSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVP-GRTVVSMTNDTILRLAEI--PNIVGVKEAS 170 (297)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH-HHHSSCCCHHHHHHHTTS--TTEEEEEECS
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECC-chhccCCCHHHHHHHHcC--CCEEEEEeCC
Confidence 3456677788766665554455555544443332100 01223333333 358988899999999854 6776666654
No 311
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=28.16 E-value=40 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=26.7
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 79 id~~~Gt~~df~~lv~~~H~--~Gi~VilD~V~ 109 (435)
T 1mxg_A 79 VETRFGSKEELVRLIQTAHA--YGIKVIADVVI 109 (435)
T ss_dssp SSCSSCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHH--CCCEEEEEECc
Confidence 45567888899999999999 99999999764
No 312
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=27.94 E-value=1.9e+02 Score=28.16 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=48.4
Q ss_pred CCeEEEEeCCcchH-----HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH
Q 017726 84 GDRIISFLIGQFSL-----LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK 158 (367)
Q Consensus 84 gd~vl~~~~~~~~~-----~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~ 158 (367)
..+|++...+--.+ ......+..|++++..... .++|++.++..+ .++++|.+|... ++...-+++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~----v~~eeiv~aA~e---~~adiVglSsl~--~~~~~~~~~ 674 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLF----QTPREVAQQAVD---ADVHAVGVSTLA--AGHKTLVPE 674 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTT----CCHHHHHHHHHH---TTCSEEEEEECS--SCHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCC----CCHHHHHHHHHH---cCCCEEEEeeec--HHHHHHHHH
Confidence 34677766643222 1345667789998865443 467887777766 467999999764 344455788
Q ss_pred HHHHHHh
Q 017726 159 VRKLLDE 165 (367)
Q Consensus 159 i~~~~~~ 165 (367)
+.+.+++
T Consensus 675 vi~~Lr~ 681 (762)
T 2xij_A 675 LIKELNS 681 (762)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888888
No 313
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=27.86 E-value=40 Score=31.17 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=26.3
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
++...|+..+++++++.||+ +|+.||+|.+
T Consensus 74 idp~~Gt~~dfk~Lv~~aH~--~Gi~VilD~V 103 (515)
T 1hvx_A 74 VRTKYGTKAQYLQAIQAAHA--AGMQVYADVV 103 (515)
T ss_dssp SSCSSCCHHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHH--CCCEEEEEEe
Confidence 44567888899999999999 9999999976
No 314
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=27.82 E-value=2.5e+02 Score=22.91 Aligned_cols=85 Identities=7% Similarity=-0.027 Sum_probs=43.5
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
++++.|++.++-..+ ..+...|-+|++..-...... .....+..+.++..+..+-. |.+++++.+++ .. .+
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~ 105 (270)
T 3ftp_A 30 VAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVN---DATAVDALVESTLKEF-GA 105 (270)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTT---CHHHHHHHHHHHHHHH-SC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCC---CHHHHHHHHHHHHHHc-CC
Confidence 444455666665433 345667888877665322211 22333445666666665432 55666555543 11 24
Q ss_pred ccEEEEEecCCCcc
Q 017726 138 IKAICIVHNETATG 151 (367)
Q Consensus 138 ~~lv~~~~~~n~tG 151 (367)
.++++-+..-...+
T Consensus 106 iD~lvnnAg~~~~~ 119 (270)
T 3ftp_A 106 LNVLVNNAGITQDQ 119 (270)
T ss_dssp CCEEEECCCCCCCB
T ss_pred CCEEEECCCCCCCC
Confidence 56666555433333
No 315
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=27.82 E-value=1.2e+02 Score=28.32 Aligned_cols=77 Identities=18% Similarity=0.056 Sum_probs=49.2
Q ss_pred CCCCCeEEEEeCCcchHH-----HHHHHHHhCCceEEEe---CCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 81 LSPGDRIISFLIGQFSLL-----WIDQQQRLNFNVDVVE---SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~-----~~~~~~~~g~~~~~v~---~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+.+++.|+.+....+++. ........|+++.... ....+..|.+++...++.- +|+.++.+| |-
T Consensus 336 ~~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~---~Pk~vipvH-----Ge 407 (562)
T 3bk2_A 336 IKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLT---TPRFFLPWH-----GE 407 (562)
T ss_dssp CCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSCCHHHHHHHHHHH---CCSEEEEES-----BC
T ss_pred CCCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCCCHHHHHHHHHhc---CCCEEEEEc-----CC
Confidence 478898888765444431 2233445677776532 1234566889998888762 578888887 44
Q ss_pred cccHHHHHHHHHh
Q 017726 153 TNNLSKVRKLLDE 165 (367)
Q Consensus 153 ~~~~~~i~~~~~~ 165 (367)
.-.+.+..+++++
T Consensus 408 ~~~~~~~~~~~~~ 420 (562)
T 3bk2_A 408 VRHQMNFKWLAES 420 (562)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4456667777777
No 316
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=27.58 E-value=2.6e+02 Score=23.14 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=29.5
Q ss_pred CCHHHHHHHHhccC-CCCccEEEEEecCCCccccc-cHHHHHHHHHhcCCCcEEEEeee
Q 017726 121 AKLDVLASKLAADT-AHTIKAICIVHNETATGVTN-NLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 121 ~d~e~l~~~i~~~~-~~~~~lv~~~~~~n~tG~~~-~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
++.+++........ -...++++++. ..+.+... -+.++.+.+++ +|+.+++|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~~~~a~~--~g~~v~~D~~ 163 (306)
T 2abq_A 108 IKKEHVQALLEQLTELEKGDVLVLAG-SVPQAMPQTIYRSMTQIAKE--RGAFVAVDTS 163 (306)
T ss_dssp CCHHHHHHHHHHHTTCCTTCEEEEES-CCCTTSCTTHHHHHHHHHHT--TTCEEEEECC
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEec-CCCCCCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 55666654322100 02457777653 22322211 25567777777 8999999964
No 317
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=27.52 E-value=2.5e+02 Score=22.90 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=37.7
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA 132 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~ 132 (367)
+++++|++.++-.++ ..+...|-+|++.+-..-... .....+..|.++..+..+-. |.+++++.+++
T Consensus 9 valVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt---~~~~v~~~~~~ 77 (254)
T 4fn4_A 9 VVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVS---KKKDVEEFVRR 77 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT---SHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC---CHHHHHHHHHH
Confidence 444455666665544 346677888887765322211 23334556778887776643 45555555443
No 318
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=27.46 E-value=72 Score=25.56 Aligned_cols=35 Identities=6% Similarity=0.127 Sum_probs=27.2
Q ss_pred CccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 137 TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
.|..|+ |..-|..|......++.+++++ ||+.++.
T Consensus 167 ~Pa~vi-cEi~~~dG~mar~~~l~~fA~~--h~l~~it 201 (217)
T 1g57_A 167 KPAGVL-CELTNDDGTMARAPECIEFANK--HNMALVT 201 (217)
T ss_dssp CSCEEE-EEBBCTTSSBCCHHHHHHHHHH--TTCEEEE
T ss_pred CceEEE-EEEeCCCCCccCHHHHHHHHHH--cCCCEEE
Confidence 345554 5455788999999999999999 9998773
No 319
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=27.02 E-value=2.7e+02 Score=23.10 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=43.8
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
+++ .|++.++-..+ ..+...|-+|++..-...... .....+..+.++..+..+-. |.+.+++++++ .. .+
T Consensus 34 vlV-TGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~ 108 (301)
T 3tjr_A 34 AVV-TGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVR---HLDEMVRLADEAFRLL-GG 108 (301)
T ss_dssp EEE-ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHHH-SS
T ss_pred EEE-eCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCC---CHHHHHHHHHHHHHhC-CC
Confidence 444 55555665433 345667878877655322211 22223344667777766533 55666555543 11 25
Q ss_pred ccEEEEEecCCCccc
Q 017726 138 IKAICIVHNETATGV 152 (367)
Q Consensus 138 ~~lv~~~~~~n~tG~ 152 (367)
.++++-+..-...|.
T Consensus 109 id~lvnnAg~~~~~~ 123 (301)
T 3tjr_A 109 VDVVFSNAGIVVAGP 123 (301)
T ss_dssp CSEEEECCCCCCCBC
T ss_pred CCEEEECCCcCCCCC
Confidence 567766654443343
No 320
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=26.98 E-value=57 Score=26.33 Aligned_cols=59 Identities=10% Similarity=-0.032 Sum_probs=37.8
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCC-CHHHHHHHHhccCCCCccEEEEEecC
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGA-KLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
|.+|+++.|...+..+...++..|+++..+|+-.-... +.+.+...+. ..+.|++++++
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~-----~~d~viftS~~ 60 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELS-----RADILIFISTS 60 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHT-----TCSEEEECSHH
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhc-----CCCEEEEECHH
Confidence 56799999877666666778889999888875421111 2333333343 35788888754
No 321
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=26.87 E-value=2.4e+02 Score=22.46 Aligned_cols=84 Identities=6% Similarity=0.051 Sum_probs=43.3
Q ss_pred EecCChhHHHHHHH-HccCCCCCeEEEEeCCcchH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 64 LIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSL--LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 64 ~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
+++.|++.++-..+ ..+...|-+|++........ ......+..+.++..+..+-. |.+++++.+++ .. .+
T Consensus 7 ~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~ 82 (246)
T 3osu_A 7 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVA---DADEVKAMIKEVVSQF-GS 82 (246)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTT---CHHHHHHHHHHHHHHH-SC
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCC---CHHHHHHHHHHHHHHc-CC
Confidence 44455565665433 44667788887754422221 122333445677777766533 55666555543 11 25
Q ss_pred ccEEEEEecCCCcc
Q 017726 138 IKAICIVHNETATG 151 (367)
Q Consensus 138 ~~lv~~~~~~n~tG 151 (367)
.++++-+......+
T Consensus 83 id~lv~nAg~~~~~ 96 (246)
T 3osu_A 83 LDVLVNNAGITRDN 96 (246)
T ss_dssp CCEEEECCCCCCCC
T ss_pred CCEEEECCCCCCCC
Confidence 56666555443333
No 322
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=26.64 E-value=2.2e+02 Score=23.98 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+. .+ +..-+++...|. .||.-++.+.+.++++. .++.-+=|
T Consensus 98 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~~lPiilYn~P~-~tg~~l~~~~~~~La~~--pnIvgiK~ 173 (303)
T 2wkj_A 98 LAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA-DGLPMVVYNIPA-LSGVKLTLDQINTLVTL--PGVGALXQ 173 (303)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-TTCCEEEEECHH-HHCCCCCHHHHHHHHTS--TTEEEEEE
T ss_pred HHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC-CCCCEEEEeCcc-ccCCCCCHHHHHHHhcC--CCEEEEeC
Confidence 4456677888876665555555566655443322 11 112244444443 68988999999999865 67776767
Q ss_pred eee
Q 017726 176 GVS 178 (367)
Q Consensus 176 ~~~ 178 (367)
.+.
T Consensus 174 s~g 176 (303)
T 2wkj_A 174 TSG 176 (303)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 323
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=26.50 E-value=71 Score=26.11 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=32.9
Q ss_pred CC-eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCH---HHHHHHHhccCCCCccEEEEEec
Q 017726 84 GD-RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL---DVLASKLAADTAHTIKAICIVHN 146 (367)
Q Consensus 84 gd-~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~---e~l~~~i~~~~~~~~~lv~~~~~ 146 (367)
|. +|+++.+..........++..|+++..+++-... .+. +.+.+.+.+ .+...|+++++
T Consensus 130 g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~-~~~~~~~~~~~~l~~---~~~d~v~ftS~ 192 (261)
T 1wcw_A 130 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHL-PDPEGILRLEEALLR---GEVDALAFVAA 192 (261)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEE-ECHHHHHHHHHHHHH---TCCSEEEECSH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEe-cCCccHHHHHHHHHc---CCCCEEEEECH
Confidence 77 7888777554444455666778887777653222 222 333334432 23466766654
No 324
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=26.28 E-value=2.5e+02 Score=22.54 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=42.2
Q ss_pred EEecCChhHHHHHH-HHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESA-LTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~-~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
+++ .|++.++-.. ...+...|-+|++..-.. .......+..+.++..+..+-. |.+++++.+++ .. .+.
T Consensus 11 ~lV-TGas~gIG~a~a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~~-g~i 83 (255)
T 4eso_A 11 AIV-IGGTHGMGLATVRRLVEGGAEVLLTGRNE--SNIARIREEFGPRVHALRSDIA---DLNEIAVLGAAAGQTL-GAI 83 (255)
T ss_dssp EEE-ETCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHGGGEEEEECCTT---CHHHHHHHHHHHHHHH-SSE
T ss_pred EEE-ECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCcceEEEccCC---CHHHHHHHHHHHHHHh-CCC
Confidence 455 4455555443 344666788887775532 2223344445667777766533 55555555432 11 245
Q ss_pred cEEEEEecCCCcc
Q 017726 139 KAICIVHNETATG 151 (367)
Q Consensus 139 ~lv~~~~~~n~tG 151 (367)
++++.+......+
T Consensus 84 d~lv~nAg~~~~~ 96 (255)
T 4eso_A 84 DLLHINAGVSELE 96 (255)
T ss_dssp EEEEECCCCCCCB
T ss_pred CEEEECCCCCCCC
Confidence 6665554433333
No 325
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=26.26 E-value=2.6e+02 Score=22.70 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=43.8
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
++++.|++.++-..+ ..+...|-+|++..-...... .....+..+.++..+..+-. |.+.+++++++ .. .
T Consensus 30 ~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~---d~~~v~~~~~~~~~~~-g 105 (269)
T 4dmm_A 30 IALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVS---QESEVEALFAAVIERW-G 105 (269)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT---SHHHHHHHHHHHHHHH-S
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCC---CHHHHHHHHHHHHHHc-C
Confidence 444455566664433 446677888877544222211 22333445667777766533 55665555543 11 2
Q ss_pred CccEEEEEecCCCcc
Q 017726 137 TIKAICIVHNETATG 151 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG 151 (367)
+.++++-+......+
T Consensus 106 ~id~lv~nAg~~~~~ 120 (269)
T 4dmm_A 106 RLDVLVNNAGITRDT 120 (269)
T ss_dssp CCCEEEECCCCCCCC
T ss_pred CCCEEEECCCCCCCC
Confidence 456666555444333
No 326
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=26.24 E-value=60 Score=25.77 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=27.0
Q ss_pred ccEEEEEec--CCCccccccHHHHHHHHHhcCCCcEEE
Q 017726 138 IKAICIVHN--ETATGVTNNLSKVRKLLDEYRHPALFL 173 (367)
Q Consensus 138 ~~lv~~~~~--~n~tG~~~~~~~i~~~~~~~~~~~~vi 173 (367)
|..+ +|.. -|..|......++.+++++ ||+.++
T Consensus 159 Pa~v-icEiv~~~~dG~mar~~~l~~fA~~--h~l~~i 193 (206)
T 3mio_A 159 PAGA-ICEIVSQKDEGSMAHTDELRVFADE--HGLALI 193 (206)
T ss_dssp SBEE-EEEBBCSSSTTSBCCHHHHHHHHHH--HTCEEE
T ss_pred ceEE-EEEEeeeCCCCCcCCHHHHHHHHHH--cCCcEE
Confidence 4555 5555 6788999999999999999 999877
No 327
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=26.21 E-value=2.1e+02 Score=27.75 Aligned_cols=84 Identities=21% Similarity=0.214 Sum_probs=53.4
Q ss_pred CCeEEEEeCCcchH-----HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH
Q 017726 84 GDRIISFLIGQFSL-----LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK 158 (367)
Q Consensus 84 gd~vl~~~~~~~~~-----~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~ 158 (367)
..+|++...+--.+ ......+..|++++....+ .++|++.++..+ .++++|.+|... +++..-+++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~----v~~eeiv~aA~e---~~adiVglSsl~--~~~~~~~~~ 666 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLF----QTPEETARQAVE---ADVHVVGVSSLA--GGHLTLVPA 666 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTT----BCHHHHHHHHHH---TTCSEEEEEECS--SCHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCC----CCHHHHHHHHHH---cCCCEEEEeeec--HhHHHHHHH
Confidence 34677766642222 1345677789999775443 467887777766 467999999854 344455788
Q ss_pred HHHHHHhcCC-CcEEEEee
Q 017726 159 VRKLLDEYRH-PALFLVDG 176 (367)
Q Consensus 159 i~~~~~~~~~-~~~vi~D~ 176 (367)
+.+.+++... +++|++=+
T Consensus 667 vi~~L~~~G~~~i~VivGG 685 (727)
T 1req_A 667 LRKELDKLGRPDILITVGG 685 (727)
T ss_dssp HHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHhcCCCCCEEEEcC
Confidence 8888887221 45666543
No 328
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=26.18 E-value=2.6e+02 Score=22.69 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=42.6
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSL--LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
+++ .|++.++-..+ ..+...|-+|++........ ......+..+.++..+..+-. |.+++++.+++ .. .
T Consensus 30 ~lV-TGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---~~~~v~~~~~~~~~~~-g 104 (267)
T 3u5t_A 30 AIV-TGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVS---DPAAVRRLFATAEEAF-G 104 (267)
T ss_dssp EEE-ESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHHH-S
T ss_pred EEE-eCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCC---CHHHHHHHHHHHHHHc-C
Confidence 455 45555664433 34566788887753322221 122333445667777766533 55666555543 11 2
Q ss_pred CccEEEEEecCCCcc
Q 017726 137 TIKAICIVHNETATG 151 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG 151 (367)
+.++++-+..-.+.+
T Consensus 105 ~iD~lvnnAG~~~~~ 119 (267)
T 3u5t_A 105 GVDVLVNNAGIMPLT 119 (267)
T ss_dssp CEEEEEECCCCCCCC
T ss_pred CCCEEEECCCCCCCC
Confidence 456666554433333
No 329
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=26.07 E-value=1.2e+02 Score=28.25 Aligned_cols=77 Identities=17% Similarity=0.018 Sum_probs=49.3
Q ss_pred CCCCCeEEEEeCCcchHH-----HHHHHHHhCCceEEE---eCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 81 LSPGDRIISFLIGQFSLL-----WIDQQQRLNFNVDVV---ESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~-----~~~~~~~~g~~~~~v---~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+.+||.|+.+....+++. ........|++++.- .....+..+-+++...++. -+|+.++.+| |-
T Consensus 321 ~~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~---~~Pk~~ipvH-----Ge 392 (555)
T 3zq4_A 321 INPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRL---IKPKFFMPIH-----GE 392 (555)
T ss_dssp CCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCCCCCSSCCHHHHHHHHHH---SCEEEEEEES-----BC
T ss_pred cCCCCEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcceEEeCCCCHHHHHHHHHH---hCCCEEEEcC-----CC
Confidence 468999998877555542 122345578877641 1222456688999988875 3678887776 54
Q ss_pred cccHHHHHHHHHh
Q 017726 153 TNNLSKVRKLLDE 165 (367)
Q Consensus 153 ~~~~~~i~~~~~~ 165 (367)
.-.+.+.++++++
T Consensus 393 ~~~~~~~~~~a~~ 405 (555)
T 3zq4_A 393 YRMQKMHVKLATD 405 (555)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666777776
No 330
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=25.72 E-value=2e+02 Score=26.50 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=59.5
Q ss_pred CChHHHHHHHccCC-CCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhH-HHHHHHHccCCCCCeEEEEeCCcch
Q 017726 19 HIPDQVIRAMNRNN-EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG-AWESALTNTLSPGDRIISFLIGQFS 96 (367)
Q Consensus 19 ~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~-al~~~~~~~~~~gd~vl~~~~~~~~ 96 (367)
++++.+.+.+.+.. .....+. ..++. ..++.-. +.++..+.|++ .+...+.++..+| .+++..|. -+
T Consensus 8 ~L~~~~~~~l~~~~g~~~~r~~----Q~~~i---~~il~g~--d~lv~apTGsGKTl~~~lp~l~~~g-~~lvi~P~-~a 76 (523)
T 1oyw_A 8 NLESGAKQVLQETFGYQQFRPG----QEEII---DTVLSGR--DCLVVMPTGGGKSLCYQIPALLLNG-LTVVVSPL-IS 76 (523)
T ss_dssp SHHHHHHHHHHHTTCCSSCCTT----HHHHH---HHHHTTC--CEEEECSCHHHHHHHHHHHHHHSSS-EEEEECSC-HH
T ss_pred CCCHHHHHHHHHHhCCCCCCHH----HHHHH---HHHHcCC--CEEEECCCCcHHHHHHHHHHHHhCC-CEEEECCh-HH
Confidence 45677777777732 2221121 11222 2223222 33555555542 2222233333444 45555562 22
Q ss_pred H-H-HHHHHHHhCCceEEEeCCCCCCCCHHH---HHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcE
Q 017726 97 L-L-WIDQQQRLNFNVDVVESDWGEGAKLDV---LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171 (367)
Q Consensus 97 ~-~-~~~~~~~~g~~~~~v~~~~~~~~d~e~---l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~ 171 (367)
. . +....+..|+++..+... .+.+. ....+.. ..+++++.+ | +.+.... ..+.... ..=.+
T Consensus 77 L~~q~~~~l~~~gi~~~~l~~~----~~~~~~~~~~~~~~~---~~~~ilv~T-p----e~l~~~~-~~~~l~~-~~~~~ 142 (523)
T 1oyw_A 77 LMKDQVDQLQANGVAAACLNST----QTREQQLEVMTGCRT---GQIRLLYIA-P----ERLMLDN-FLEHLAH-WNPVL 142 (523)
T ss_dssp HHHHHHHHHHHTTCCEEEECTT----SCHHHHHHHHHHHHH---TCCSEEEEC-H----HHHTSTT-HHHHHTT-SCEEE
T ss_pred HHHHHHHHHHHcCCcEEEEeCC----CCHHHHHHHHHHHhc---CCCCEEEEC-H----HHHhChH-HHHHHhh-CCCCE
Confidence 2 1 334455577777666432 12222 2222322 245666554 2 2222111 1222222 13346
Q ss_pred EEEeeeeccC
Q 017726 172 FLVDGVSSIC 181 (367)
Q Consensus 172 vi~D~~~~~~ 181 (367)
|++||+|...
T Consensus 143 vViDEaH~i~ 152 (523)
T 1oyw_A 143 LAVDEAHCIS 152 (523)
T ss_dssp EEESSGGGGC
T ss_pred EEEeCccccC
Confidence 8899999764
No 331
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=25.66 E-value=1.2e+02 Score=22.15 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 280 RLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 280 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
..++.|.+.+++.|+.+... .+..++-+.. .+.+.+++.++|
T Consensus 26 sRr~fL~~la~~kGf~v~~~----~S~~VTHVV~-E~~s~~~~~~~L 67 (133)
T 2dun_A 26 SRRAFLTGLARSKGFRVLDA----CSSEATHVVM-EETSAEEAVSWQ 67 (133)
T ss_dssp HHHHHHHHHHHHHTEEECSS----CCTTCCEEEE-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEeccc----cCCCceEEEe-cCCCHHHHHHHH
Confidence 35566677777779988876 3444455555 567888999888
No 332
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=25.63 E-value=2.5e+02 Score=22.29 Aligned_cols=85 Identities=9% Similarity=-0.017 Sum_probs=45.6
Q ss_pred EecCChhHHHHHHHHccCCCC---CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccE
Q 017726 64 LIPTTGTGAWESALTNTLSPG---DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKA 140 (367)
Q Consensus 64 ~~~~ggt~al~~~~~~~~~~g---d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~l 140 (367)
++.+|.-..++.++.++...+ +.+++... .....-...|+..|+++..++... +.-+++.+.+++ .++++
T Consensus 13 vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~-~~~a~~l~~A~~~gIp~~~~~~~~---~~~~~~~~~L~~---~~~Dl 85 (215)
T 3kcq_A 13 VLISGRGSNLEALAKAFSTEESSVVISCVISN-NAEARGLLIAQSYGIPTFVVKRKP---LDIEHISTVLRE---HDVDL 85 (215)
T ss_dssp EEESSCCHHHHHHHHHTCCC-CSEEEEEEEES-CTTCTHHHHHHHTTCCEEECCBTT---BCHHHHHHHHHH---TTCSE
T ss_pred EEEECCcHHHHHHHHHHHcCCCCcEEEEEEeC-CcchHHHHHHHHcCCCEEEeCccc---CChHHHHHHHHH---hCCCE
Confidence 343443345555565544332 33333332 111112356788999988775431 122666677765 46788
Q ss_pred EEEEecCCCccccccHHHH
Q 017726 141 ICIVHNETATGVTNNLSKV 159 (367)
Q Consensus 141 v~~~~~~n~tG~~~~~~~i 159 (367)
+++.. .|.+.|-+-+
T Consensus 86 ivlag----y~~IL~~~~l 100 (215)
T 3kcq_A 86 VCLAG----FMSILPEKFV 100 (215)
T ss_dssp EEESS----CCSCCCHHHH
T ss_pred EEEeC----CceEeCHHHH
Confidence 88765 5667776533
No 333
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=25.45 E-value=42 Score=22.24 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeee
Q 017726 156 LSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
-.+|++++++ +|+.++.|..
T Consensus 29 A~~I~~~A~e--~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAEL--YDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHH--TTCCEEECHH
T ss_pred HHHHHHHHHH--cCCCEEeCHH
Confidence 4679999999 9999999953
No 334
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=25.38 E-value=51 Score=29.98 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=29.2
Q ss_pred EEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 141 ICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 141 v~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
.-.-.++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 85 ~d~~~idp~~Gt~~df~~lv~~~H~--~Gi~VilD~V~ 120 (478)
T 2guy_A 85 QDIYSLNENYGTADDLKALSSALHE--RGMYLMVDVVA 120 (478)
T ss_dssp EEEEEECTTSCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred ccccccCccCCCHHHHHHHHHHHHH--CCCEEEEEECc
Confidence 3334455678888999999999999 99999999764
No 335
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=25.28 E-value=50 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=18.7
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
+|.+|+++............++..|+++..+++
T Consensus 140 ~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~v 172 (269)
T 3re1_A 140 PGSRVLIMRGNEGRELLAEQLRERGVGVDYLPL 172 (269)
T ss_dssp SSCEEEEEECSSCCCHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEEccCccHHHHHHHHHHCCCEEEEEeE
Confidence 556677666643333334455556777666654
No 336
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=25.23 E-value=2.6e+02 Score=23.01 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE-Eee
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL-VDG 176 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi-~D~ 176 (367)
+...++..|.++.....+.+..-..+.++.++. .+++.|++.... +. ......+.+++ .+++++ +|.
T Consensus 24 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~----~~vdgiIi~~~~-~~----~~~~~~~~~~~--~~iPvV~~~~ 91 (313)
T 3m9w_A 24 FVKKAESLGAKVFVQSANGNEETQMSQIENMIN----RGVDVLVIIPYN-GQ----VLSNVVKEAKQ--EGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH----TTCSEEEEECSS-TT----SCHHHHHHHHT--TTCEEEEESS
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH----cCCCEEEEeCCC-hh----hhHHHHHHHHH--CCCeEEEECC
Confidence 456677789988877654321111234555555 467888776532 11 23345555566 788765 564
No 337
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=24.85 E-value=52 Score=30.41 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=27.2
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
.++...|+..+++++++.||+ +|+.||.|-+.
T Consensus 71 ~vdp~~Gt~~dfk~Lv~~aH~--~Gi~VilD~V~ 102 (549)
T 4aie_A 71 AIDPQYGTMADMDELISKAKE--HHIKIVMDLVV 102 (549)
T ss_dssp EECTTTCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CcCcccCCHHHHHHHHHHHHH--CCCEEEEEECc
Confidence 344567989999999999999 99999999763
No 338
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=24.80 E-value=2.9e+02 Score=22.75 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHh-CCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc-ccccHHHHHHHHHh
Q 017726 103 QQRL-NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTNNLSKVRKLLDE 165 (367)
Q Consensus 103 ~~~~-g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG-~~~~~~~i~~~~~~ 165 (367)
++.. |.+++.+-. .+.++++.+++.+ .++++|.++...++.- ....+.++.+.+++
T Consensus 152 L~~~~G~eVi~LG~----~vp~e~iv~aa~e---~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~ 209 (262)
T 1xrs_B 152 LERYEMIDAYNLGS----QVANEDFIKKAVE---LEADVLLVSQTVTQKNVHIQNMTHLIELLEA 209 (262)
T ss_dssp GGGCTTEEEEECCS----SBCHHHHHHHHHH---TTCSEEEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred HHhcCCcEEEECCC----CCCHHHHHHHHHH---cCCCEEEEEeecCCccchHHHHHHHHHHHHh
Confidence 4455 776665543 2578888888776 4678888876543211 34457777777776
No 339
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=24.75 E-value=2.3e+02 Score=23.65 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=44.5
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
..+.++..|+.-.-+-.+.-+..+.+.+.+-.+. .+ +- -+++...| ..||.-++.+.+.++++. .++.-+=|
T Consensus 91 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~l-PiilYn~P-~~tg~~l~~~~~~~La~~--pnIvgiK~ 165 (293)
T 1f6k_A 91 LGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET-GS-NMIVYSIP-FLTGVNMGIEQFGELYKN--PKVLGVKF 165 (293)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-CC-CEEEEECH-HHHCCCCCHHHHHHHHTS--TTEEEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CC-CEEEEECc-cccCcCCCHHHHHHHhcC--CCEEEEEE
Confidence 4456677888876665555555565554433322 11 11 23444433 368988899999999865 67776667
Q ss_pred ee
Q 017726 176 GV 177 (367)
Q Consensus 176 ~~ 177 (367)
.+
T Consensus 166 s~ 167 (293)
T 1f6k_A 166 TA 167 (293)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 340
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.65 E-value=2.4e+02 Score=23.51 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=42.3
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL 162 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~ 162 (367)
++..+++..+ .|++ +++.+|++...+... +..+++.++.++++.-...+.+.|+..... +-+....+
T Consensus 189 ~~~~~v~~H~-af~Y----f~~~yGl~~~~~~~~-~~eps~~~l~~l~~~ik~~~v~~If~e~~~-------~~~~~~~i 255 (291)
T 1pq4_A 189 PQRKFIVFHP-SWAY----FARDYNLVQIPIEVE-GQEPSAQELKQLIDTAKENNLTMVFGETQF-------STKSSEAI 255 (291)
T ss_dssp SCCEEEESSC-CCHH----HHHHTTCEEEESCBT-TBCCCHHHHHHHHHHHHTTTCCEEEEETTS-------CCHHHHHH
T ss_pred CCCEEEEECC-chHH----HHHHCCCEEeecccC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------ChHHHHHH
Confidence 4666666544 4443 367789987765432 345666666655543211467777765432 22333455
Q ss_pred HHhcCCCcEEE
Q 017726 163 LDEYRHPALFL 173 (367)
Q Consensus 163 ~~~~~~~~~vi 173 (367)
+++ .|+.++
T Consensus 256 a~~--~g~~v~ 264 (291)
T 1pq4_A 256 AAE--IGAGVE 264 (291)
T ss_dssp HHH--HTCEEE
T ss_pred HHH--cCCeEE
Confidence 777 666543
No 341
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=24.64 E-value=45 Score=29.92 Aligned_cols=32 Identities=6% Similarity=0.138 Sum_probs=27.2
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
.++...|+..+++++.+.||+ +|+.||.|.+.
T Consensus 73 ~idp~~Gt~~d~~~lv~~ah~--~Gi~vilD~V~ 104 (424)
T 2dh2_A 73 QIDPNFGSKEDFDSLLQSAKK--KSIRVILDLTP 104 (424)
T ss_dssp EECGGGCCHHHHHHHHHHHHH--TTCEEEEECCT
T ss_pred ccCccCCCHHHHHHHHHHHHH--CCCEEEEEECC
Confidence 345568888999999999999 99999999764
No 342
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=24.54 E-value=2.8e+02 Score=22.36 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=43.3
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEE-eCCcchH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISF-LIGQFSL-LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~-~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
++++.|++.++-..+ ..+...|-+|++. ....... ......+..+.++..+..+-. |.+++++++++ .. .
T Consensus 6 ~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~~-g 81 (258)
T 3oid_A 6 CALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVG---QPAKIKEMFQQIDETF-G 81 (258)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTT---CHHHHHHHHHHHHHHH-S
T ss_pred EEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCC---CHHHHHHHHHHHHHHc-C
Confidence 344455666665444 4466778888775 3321111 122233445667777766533 55666555543 11 2
Q ss_pred CccEEEEEecCCCcc
Q 017726 137 TIKAICIVHNETATG 151 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG 151 (367)
+.++++-+......+
T Consensus 82 ~id~lv~nAg~~~~~ 96 (258)
T 3oid_A 82 RLDVFVNNAASGVLR 96 (258)
T ss_dssp CCCEEEECCCCCCCS
T ss_pred CCCEEEECCCCCCCC
Confidence 456666655433333
No 343
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=24.34 E-value=2.8e+02 Score=22.27 Aligned_cols=85 Identities=8% Similarity=-0.039 Sum_probs=42.5
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC-CCcc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSL-LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA-HTIK 139 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~-~~~~ 139 (367)
+++ .|++.++-..+ ..+...|-+|++..-..... ......+..|.++..+..+-. |.+++++.+++-.. .+.+
T Consensus 10 vlV-TGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~g~id 85 (252)
T 3h7a_A 10 VAV-IGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDAR---NEDEVTAFLNAADAHAPLE 85 (252)
T ss_dssp EEE-ECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTT---CHHHHHHHHHHHHHHSCEE
T ss_pred EEE-ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCC---CHHHHHHHHHHHHhhCCce
Confidence 444 45555554433 44566787877765532222 122333444677777776533 45555555443100 2455
Q ss_pred EEEEEecCCCcc
Q 017726 140 AICIVHNETATG 151 (367)
Q Consensus 140 lv~~~~~~n~tG 151 (367)
+++-+......+
T Consensus 86 ~lv~nAg~~~~~ 97 (252)
T 3h7a_A 86 VTIFNVGANVNF 97 (252)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEECCCcCCCC
Confidence 665554433333
No 344
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=24.29 E-value=3.2e+02 Score=23.04 Aligned_cols=75 Identities=8% Similarity=0.019 Sum_probs=44.2
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEe-CCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVE-SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL 162 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~-~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~ 162 (367)
+..+++..+ .|++ +++.+|++...+. +..+..+++.++.++++.-...+.+.|+.....++ +.+..+
T Consensus 190 ~~~~v~~H~-af~Y----fa~~yGl~~~~~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~~~-------k~~~~i 257 (307)
T 3ujp_A 190 QRFLVSCEG-AFSY----LARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQKQV 257 (307)
T ss_dssp GCEEEEEES-TTHH----HHHHTTCEEEEEESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHHHHT
T ss_pred CCEEEEECc-hHHH----HHHHCCCcEEEeeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCCCh-------HHHHHH
Confidence 345555544 3443 3678999877553 44455566666655554321256788877654333 556677
Q ss_pred HHhcCCCcEE
Q 017726 163 LDEYRHPALF 172 (367)
Q Consensus 163 ~~~~~~~~~v 172 (367)
+++ .|+.+
T Consensus 258 a~e--~g~~v 265 (307)
T 3ujp_A 258 AQA--TGARF 265 (307)
T ss_dssp TTT--TCCEE
T ss_pred HHH--hCCce
Confidence 777 77765
No 345
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.23 E-value=2.2e+02 Score=22.99 Aligned_cols=64 Identities=5% Similarity=-0.018 Sum_probs=35.6
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE-Eeee
Q 017726 100 IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL-VDGV 177 (367)
Q Consensus 100 ~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi-~D~~ 177 (367)
...++..|.++.....+.+..-..+.++..+. .+++.|++..... ....+.+++ .+++++ +|..
T Consensus 30 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~----~~vdgiIi~~~~~--------~~~~~~l~~--~~iPvV~i~~~ 94 (276)
T 3jy6_A 30 SSILESRGYIGVLFDANADIEREKTLLRAIGS----RGFDGLILQSFSN--------PQTVQEILH--QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT----TTCSEEEEESSCC--------HHHHHHHHT--TSSCEEEESCC
T ss_pred HHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEecCCc--------HHHHHHHHH--CCCCEEEEecc
Confidence 45567778888887765321111123333333 4678888775432 455555666 677654 5643
No 346
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=24.22 E-value=2.8e+02 Score=22.28 Aligned_cols=82 Identities=13% Similarity=0.020 Sum_probs=43.5
Q ss_pred EEecCChhHHHHHH-HHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESA-LTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~-~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
+++ .|++..+-.. ...+...|-+|++.+-... ......+..+.++..+..+-. |.+++++.+++ .. .+.
T Consensus 11 vlV-TGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~~-g~i 83 (259)
T 4e6p_A 11 ALI-TGSARGIGRAFAEAYVREGATVAIADIDIE--RARQAAAEIGPAAYAVQMDVT---RQDSIDAAIAATVEHA-GGL 83 (259)
T ss_dssp EEE-ETCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHCTTEEEEECCTT---CHHHHHHHHHHHHHHS-SSC
T ss_pred EEE-ECCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHhCCCceEEEeeCC---CHHHHHHHHHHHHHHc-CCC
Confidence 455 4455555443 3446667888887765222 223344445666666665532 55666555543 11 256
Q ss_pred cEEEEEecCCCcc
Q 017726 139 KAICIVHNETATG 151 (367)
Q Consensus 139 ~lv~~~~~~n~tG 151 (367)
++++-+......+
T Consensus 84 d~lv~~Ag~~~~~ 96 (259)
T 4e6p_A 84 DILVNNAALFDLA 96 (259)
T ss_dssp CEEEECCCCCCCB
T ss_pred CEEEECCCcCCCC
Confidence 7776665444433
No 347
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=24.21 E-value=2.8e+02 Score=22.31 Aligned_cols=81 Identities=11% Similarity=-0.006 Sum_probs=42.2
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
+++..||+.++-..+ ..+...|-+|++..-...... ........+.++..+..+-. |.+.+++++++ .. .+
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~~-g~ 106 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLS---HSDAIAAFATGVLAAH-GR 106 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTT---CHHHHHHHHHHHHHHH-SC
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCC---CHHHHHHHHHHHHHhc-CC
Confidence 344455666665444 345667878877655322211 22233345667777766533 45665555443 11 24
Q ss_pred ccEEEEEecC
Q 017726 138 IKAICIVHNE 147 (367)
Q Consensus 138 ~~lv~~~~~~ 147 (367)
.++++.+...
T Consensus 107 id~lv~~Ag~ 116 (262)
T 3rkr_A 107 CDVLVNNAGV 116 (262)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCc
Confidence 6677665543
No 348
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=24.08 E-value=2.1e+02 Score=22.46 Aligned_cols=96 Identities=8% Similarity=-0.102 Sum_probs=47.8
Q ss_pred EEecCChhHHHHHH-HHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC--CCC
Q 017726 63 FLIPTTGTGAWESA-LTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT--AHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~-~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~ 137 (367)
+++| ||+.++-.. ...+...|-+|++..-...... .....+..+.++..+..+-. |.+++++++++-. ..+
T Consensus 5 vlIT-Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 5 AVIT-GASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVS---KAESVEEFSKKVLERFGD 80 (235)
T ss_dssp EEEE-SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT---CHHHHHHHCC-HHHHHSS
T ss_pred EEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccC---CHHHHHHHHHHHHHhcCC
Confidence 4454 455555443 3445667877777655322211 12222245777777776532 5667666654310 025
Q ss_pred ccEEEEEecCCCccccc--cHHHHHHH
Q 017726 138 IKAICIVHNETATGVTN--NLSKVRKL 162 (367)
Q Consensus 138 ~~lv~~~~~~n~tG~~~--~~~~i~~~ 162 (367)
.++++.+....+.+.+. +.+.+.+.
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~ 107 (235)
T 3l77_A 81 VDVVVANAGLGYFKRLEELSEEEFHEM 107 (235)
T ss_dssp CSEEEECCCCCCCCCTTTSCHHHHHHH
T ss_pred CCEEEECCccccccCcccCCHHHHHHH
Confidence 67776665544444332 34444433
No 349
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=24.03 E-value=2.9e+02 Score=22.48 Aligned_cols=82 Identities=7% Similarity=-0.095 Sum_probs=42.6
Q ss_pred EEecCChhHHHHHH-HHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESA-LTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~-~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
++++.|++.++-.. ...+...|-+|++..-...... ...+....+.++..+..+-. |.+++++++++ .. .
T Consensus 29 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~~-g 104 (277)
T 4fc7_A 29 VAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVR---APPAVMAAVDQALKEF-G 104 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT---CHHHHHHHHHHHHHHH-S
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCC---CHHHHHHHHHHHHHHc-C
Confidence 34445556566443 3456677888877655322211 22222334677777776533 45555555543 11 2
Q ss_pred CccEEEEEecCC
Q 017726 137 TIKAICIVHNET 148 (367)
Q Consensus 137 ~~~lv~~~~~~n 148 (367)
+.++++-+....
T Consensus 105 ~id~lv~nAg~~ 116 (277)
T 4fc7_A 105 RIDILINCAAGN 116 (277)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCcCC
Confidence 556666555433
No 350
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=23.90 E-value=49 Score=29.40 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=26.2
Q ss_pred CCccccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 148 n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
...|+..+++++++.||+ +|+.||.|.+..
T Consensus 63 ~~~Gt~~d~~~lv~~~h~--~Gi~VilD~V~N 92 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHG--KGVQAIADIVIN 92 (405)
T ss_dssp CTTCCHHHHHHHHHHHHH--TTCEEEEEECCS
T ss_pred ccCCCHHHHHHHHHHHHH--CCCEEEEEECcC
Confidence 556888899999999999 999999998643
No 351
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=23.85 E-value=1.2e+02 Score=26.18 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=10.3
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeee
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
+|.+.+.+.+++ ++.+|++++.
T Consensus 260 ~d~~~i~~~~~~--~~~vv~vEe~ 281 (342)
T 2bfd_B 260 WDVDTICKSVIK--TGRLLISHEA 281 (342)
T ss_dssp CCHHHHHHHHHH--HSCEEEEEEE
T ss_pred CCHHHHHHHHhc--CCEEEEEEeC
Confidence 344555555555 3334444433
No 352
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=23.81 E-value=3e+02 Score=22.44 Aligned_cols=85 Identities=6% Similarity=0.020 Sum_probs=43.6
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSL--LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
++++.|++.++-..+ ..+...|-+|++........ ......+..|.++..+..+-. |.+++++.+++ .. .
T Consensus 33 ~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g 108 (271)
T 3v2g_A 33 TAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNR---DAEAIEQAIRETVEAL-G 108 (271)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHHH-S
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCC---CHHHHHHHHHHHHHHc-C
Confidence 344455555664433 44667788887764322111 122333445777777776533 56666655543 11 2
Q ss_pred CccEEEEEecCCCcc
Q 017726 137 TIKAICIVHNETATG 151 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG 151 (367)
+.++++-+......+
T Consensus 109 ~iD~lvnnAg~~~~~ 123 (271)
T 3v2g_A 109 GLDILVNSAGIWHSA 123 (271)
T ss_dssp CCCEEEECCCCCCCC
T ss_pred CCcEEEECCCCCCCC
Confidence 456666554433333
No 353
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=23.75 E-value=2.7e+02 Score=23.26 Aligned_cols=75 Identities=8% Similarity=-0.001 Sum_probs=43.1
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEe-CCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVE-SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~-~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
..+++..+ .|.+ +++.+|++...+. ...+..+++.++.++++.-...+.+.|+..... +-+.+..++
T Consensus 184 ~~~v~~H~-af~Y----f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~-------~~~~~~~ia 251 (294)
T 3hh8_A 184 KLIVTSEG-CFKY----FSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSV-------DRRPMETVS 251 (294)
T ss_dssp CCEEEEES-CCHH----HHHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEETTS-------CSHHHHHHH
T ss_pred cEEEEECC-hHHH----HHHHcCCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------CcHHHHHHH
Confidence 55666655 4443 2677899877664 334445666655555443111467787775432 234566777
Q ss_pred HhcCCCcEEE
Q 017726 164 DEYRHPALFL 173 (367)
Q Consensus 164 ~~~~~~~~vi 173 (367)
++ .|+.++
T Consensus 252 ~~--~g~~v~ 259 (294)
T 3hh8_A 252 KD--SGIPIY 259 (294)
T ss_dssp HH--HCCCEE
T ss_pred HH--hCCcEE
Confidence 87 676654
No 354
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=23.70 E-value=2.7e+02 Score=21.99 Aligned_cols=82 Identities=13% Similarity=0.033 Sum_probs=40.1
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
+++ .|++.++-..+ ..+...|-+|++..-... ......+..+.++..+..+-. |.+++++.+++ .. .+.
T Consensus 6 vlV-TGas~GIG~a~a~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~~-g~i 78 (235)
T 3l6e_A 6 IIV-TGAGSGLGRALTIGLVERGHQVSMMGRRYQ--RLQQQELLLGNAVIGIVADLA---HHEDVDVAFAAAVEWG-GLP 78 (235)
T ss_dssp EEE-ESTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHGGGEEEEECCTT---SHHHHHHHHHHHHHHH-CSC
T ss_pred EEE-ECCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHhcCCceEEECCCC---CHHHHHHHHHHHHHhc-CCC
Confidence 444 45555664433 345667888877655221 222233333445666665532 45555555443 11 256
Q ss_pred cEEEEEecCCCcc
Q 017726 139 KAICIVHNETATG 151 (367)
Q Consensus 139 ~lv~~~~~~n~tG 151 (367)
++++-+......+
T Consensus 79 d~lvnnAg~~~~~ 91 (235)
T 3l6e_A 79 ELVLHCAGTGEFG 91 (235)
T ss_dssp SEEEEECCCC---
T ss_pred cEEEECCCCCCCC
Confidence 7776665444333
No 355
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=23.69 E-value=3.5e+02 Score=23.98 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCH
Q 017726 45 KTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKL 123 (367)
Q Consensus 45 ~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~ 123 (367)
++....++..++..+.+.|+=.+.|++.....+.... ++..|+..+....... ....++..|.++..+..+.
T Consensus 232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~------ 304 (429)
T 1sqg_A 232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG------ 304 (429)
T ss_dssp CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT------
T ss_pred CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch------
Confidence 3455566777777666667666666766665554433 3345666655332222 3344555677655444331
Q ss_pred HHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 124 DVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 124 e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
..+...+.. ...+.|++..|-+.+|.+
T Consensus 305 ~~~~~~~~~---~~fD~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 305 RYPSQWCGE---QQFDRILLDAPCSATGVI 331 (429)
T ss_dssp TCTHHHHTT---CCEEEEEEECCCCCGGGT
T ss_pred hhchhhccc---CCCCEEEEeCCCCccccc
Confidence 111121221 245788888887788865
No 356
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=23.66 E-value=72 Score=25.74 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=26.4
Q ss_pred EEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
+.++|-.-|..|......++.+++++ ||+.++.
T Consensus 180 a~VicEi~~ddG~mar~~~l~~fA~~--h~l~~it 212 (227)
T 1snn_A 180 ITTICEMMGDDGNAMSKNETKRYAEK--HNLIYLS 212 (227)
T ss_dssp EEEEEEEBCTTSSBCCHHHHHHHHHH--HTCCEEE
T ss_pred eEEEEEEeCCCCCcCCHHHHHHHHHH--cCCcEEE
Confidence 33455555788999999999999999 8888763
No 357
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=23.47 E-value=2.9e+02 Score=22.19 Aligned_cols=81 Identities=9% Similarity=-0.044 Sum_probs=42.5
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
++++.|++.++-..+ ..+...|-+|++..-...... .....+..+.++..+..+-. |.+.+++.+++ .. .+
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~ 89 (256)
T 3gaf_A 14 VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVT---DEQHREAVIKAALDQF-GK 89 (256)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHHH-SC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCC---CHHHHHHHHHHHHHHc-CC
Confidence 444455666665433 345667888877655322211 22333445677777766533 45555555443 11 25
Q ss_pred ccEEEEEecC
Q 017726 138 IKAICIVHNE 147 (367)
Q Consensus 138 ~~lv~~~~~~ 147 (367)
.++++-+...
T Consensus 90 id~lv~nAg~ 99 (256)
T 3gaf_A 90 ITVLVNNAGG 99 (256)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 5666655443
No 358
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=23.45 E-value=2.2e+02 Score=23.66 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=42.8
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
++..+++..+ .|++ +++.+|++...+.. ..+..+++.++.++++.-...+.+.|+..... +-+.+..
T Consensus 176 ~~~~~v~~H~-af~Y----f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~-------~~~~~~~ 243 (284)
T 3cx3_A 176 TQKTFVTQHT-AFSY----LAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNA-------SSKVAET 243 (284)
T ss_dssp SCCCEEEEES-CCHH----HHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSS-------CCHHHHH
T ss_pred CCCEEEEECC-chHH----HHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------CcHHHHH
Confidence 5667777666 3443 26778998776653 23444555555554332111456777665432 2344555
Q ss_pred HHHhcCCCcEEE
Q 017726 162 LLDEYRHPALFL 173 (367)
Q Consensus 162 ~~~~~~~~~~vi 173 (367)
++++ .|+.++
T Consensus 244 ia~~--~g~~v~ 253 (284)
T 3cx3_A 244 LVKS--TGVGLK 253 (284)
T ss_dssp HHSS--SSCCEE
T ss_pred HHHH--cCCeEE
Confidence 6777 676653
No 359
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=23.42 E-value=50 Score=30.57 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=26.2
Q ss_pred CCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 148 n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
...|+..+++++++.||+ +|+.||.|.+.
T Consensus 87 p~~Gt~~dfk~Lv~~aH~--~GI~VilD~V~ 115 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGG--AGVKVLYDVVP 115 (527)
T ss_dssp SSSCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHH--CCCEEEEEEee
Confidence 667999999999999999 99999999764
No 360
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=23.25 E-value=57 Score=29.74 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=30.0
Q ss_pred EEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
..-...++...|+..+++++++.||+ +|+.||.|.+.
T Consensus 84 ~~dy~~id~~~Gt~~df~~lv~~~H~--~Gi~VilD~V~ 120 (484)
T 2aaa_A 84 QQKIYDVNSNFGTADNLKSLSDALHA--RGMYLMVDVVP 120 (484)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHT--TTCEEEEEECC
T ss_pred cccccccCcccCCHHHHHHHHHHHHH--CCCEEEEEECc
Confidence 44444556678888899999999999 99999999764
No 361
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=23.23 E-value=2.9e+02 Score=22.07 Aligned_cols=83 Identities=11% Similarity=0.003 Sum_probs=41.9
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
++++.|++.++-..+ ..+...|-+|++..-... ......+..+.+...+..+-. |.+++++++++ .. .+.
T Consensus 11 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g~i 84 (248)
T 3op4_A 11 VALVTGASRGIGKAIAELLAERGAKVIGTATSES--GAQAISDYLGDNGKGMALNVT---NPESIEAVLKAITDEF-GGV 84 (248)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH--HHHHHHHHHGGGEEEEECCTT---CHHHHHHHHHHHHHHH-CCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHhcccceEEEEeCC---CHHHHHHHHHHHHHHc-CCC
Confidence 344455555654433 446677888877655322 222333444445555555432 55666655543 11 255
Q ss_pred cEEEEEecCCCcc
Q 017726 139 KAICIVHNETATG 151 (367)
Q Consensus 139 ~lv~~~~~~n~tG 151 (367)
++++-+......+
T Consensus 85 D~lv~nAg~~~~~ 97 (248)
T 3op4_A 85 DILVNNAGITRDN 97 (248)
T ss_dssp SEEEECCCCCCCC
T ss_pred CEEEECCCCCCCC
Confidence 6766655444333
No 362
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=23.09 E-value=2.6e+02 Score=23.16 Aligned_cols=77 Identities=5% Similarity=-0.081 Sum_probs=43.4
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEe-CCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE-SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~-~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
++..+++..+ .|++ +++.+|++...+. ...+..+++.++.++++.-...+.+.|+.... .+-+.+..
T Consensus 173 ~~~~~v~~H~-af~Y----f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~-------~~~~~~~~ 240 (284)
T 2prs_A 173 KGKGYFVFHD-AYGY----FEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQ-------FRPAVVES 240 (284)
T ss_dssp TTCCEEEEES-CCHH----HHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTT-------SCSHHHHH
T ss_pred CCCeEEEECc-cHHH----HHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-------CChHHHHH
Confidence 5667777766 3443 2577888766543 33445566666555544311145677765542 23344556
Q ss_pred HHHhcCCCcEEE
Q 017726 162 LLDEYRHPALFL 173 (367)
Q Consensus 162 ~~~~~~~~~~vi 173 (367)
++++ .|+.++
T Consensus 241 ia~~--~g~~v~ 250 (284)
T 2prs_A 241 VARG--TSVRMG 250 (284)
T ss_dssp HTTT--SCCEEE
T ss_pred HHHH--cCCeEE
Confidence 6777 777654
No 363
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=23.08 E-value=79 Score=26.39 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=34.2
Q ss_pred CC-eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCH---HHHHHHHhccCCCCccEEEEEec
Q 017726 84 GD-RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL---DVLASKLAADTAHTIKAICIVHN 146 (367)
Q Consensus 84 gd-~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~---e~l~~~i~~~~~~~~~lv~~~~~ 146 (367)
|. +|+++.+..........++..|+++..+++-... .+. +.+.+.+.+ .....|+++++
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~-~~~~~~~~~~~~l~~---~~~d~v~FtS~ 217 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHL-PDPEGILRLEEAVLR---GEVDALAFVAA 217 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEE-ECHHHHHHHHHHHHT---TCCSEEEESSH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEe-cCcccHHHHHHHHHc---CCCCEEEEECH
Confidence 66 7888877554444556667778888887764222 222 333344432 24567776654
No 364
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=23.03 E-value=3e+02 Score=22.27 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=41.5
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHT 137 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~ 137 (367)
+++ .|++..+-..+ ..+...|.+|++..-...... .....+..+.++..+..+-. |.+.+++++++ .. .+
T Consensus 34 vlI-TGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~---~~~~v~~~~~~~~~~~-g~ 108 (272)
T 1yb1_A 34 VLI-TGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCS---NREDIYSSAKKVKAEI-GD 108 (272)
T ss_dssp EEE-ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHHT-CC
T ss_pred EEE-ECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCC---CHHHHHHHHHHHHHHC-CC
Confidence 444 45555554433 345567777777654222111 11222333556666665532 55666555543 11 24
Q ss_pred ccEEEEEecCCCcc
Q 017726 138 IKAICIVHNETATG 151 (367)
Q Consensus 138 ~~lv~~~~~~n~tG 151 (367)
.++++-+......+
T Consensus 109 iD~li~~Ag~~~~~ 122 (272)
T 1yb1_A 109 VSILVNNAGVVYTS 122 (272)
T ss_dssp CSEEEECCCCCCCC
T ss_pred CcEEEECCCcCCCc
Confidence 56776665443333
No 365
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=22.85 E-value=3e+02 Score=26.08 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=43.5
Q ss_pred CCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHH
Q 017726 81 LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKV 159 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i 159 (367)
+.+||.|.+.-+...... ..-++...|+.+. +++.. +..+++...++. -++++|+........|...+++.+
T Consensus 136 v~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~v--pl~~~--~~~~~l~~~l~~---~~~~~li~~~~~~~~~~~~~~~~~ 208 (663)
T 1ry2_A 136 VRKGDTVAVYMPMVPEAIITLLAISRIGAIHS--VVFAG--FSSNSLRDRIND---GDSKVVITTDESNRGGKVIETKRI 208 (663)
T ss_dssp CCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE--ECCTT--SCHHHHHHHHHH---HTCSEEEEESBCCBTTBCCBHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEE--eeCCC--CCHHHHHHHHHh---cCCeEEEEccccccCCcccchHHH
Confidence 467888887766444433 2233445666444 44333 357778777775 356777776655555666676654
Q ss_pred HH
Q 017726 160 RK 161 (367)
Q Consensus 160 ~~ 161 (367)
.+
T Consensus 209 ~~ 210 (663)
T 1ry2_A 209 VD 210 (663)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 366
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=22.64 E-value=53 Score=29.85 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=29.5
Q ss_pred EEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
..-...++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 83 ~~dy~~idp~~Gt~~df~~lv~~~h~--~Gi~VilD~V~ 119 (475)
T 2z1k_A 83 TVDYFQVDPILGGNEALRHLLEVAHA--HGVRVILDGVF 119 (475)
T ss_dssp EEEEEEECGGGTCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CCCcCccCcccCCHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 34334455567888999999999999 99999999764
No 367
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=22.62 E-value=40 Score=30.67 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=27.3
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
.++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 66 ~idp~~Gt~~d~~~lv~~~h~--~Gi~VilD~V~ 97 (471)
T 1jae_A 66 IINTRSGDESAFTDMTRRCND--AGVRIYVDAVI 97 (471)
T ss_dssp CSEETTEEHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred cccCCCCCHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 445567888999999999999 99999999764
No 368
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=22.57 E-value=3.1e+02 Score=22.29 Aligned_cols=85 Identities=11% Similarity=-0.077 Sum_probs=42.2
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCC------------cchH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHH
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIG------------QFSL--LWIDQQQRLNFNVDVVESDWGEGAKLDVLA 127 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~------------~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~ 127 (367)
++++.|++.++-..+ ..+...|-+|++.+-. .... ......+..|.++..+..+-. |.+.++
T Consensus 17 ~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~ 93 (280)
T 3pgx_A 17 VAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVR---DDAALR 93 (280)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT---CHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCC---CHHHHH
Confidence 344445555554433 4456678888776431 0111 122233445667777665532 456555
Q ss_pred HHHhc---cCCCCccEEEEEecCCCcc
Q 017726 128 SKLAA---DTAHTIKAICIVHNETATG 151 (367)
Q Consensus 128 ~~i~~---~~~~~~~lv~~~~~~n~tG 151 (367)
+.+++ .. .+.++++-+......+
T Consensus 94 ~~~~~~~~~~-g~id~lvnnAg~~~~~ 119 (280)
T 3pgx_A 94 ELVADGMEQF-GRLDVVVANAGVLSWG 119 (280)
T ss_dssp HHHHHHHHHH-CCCCEEEECCCCCCCB
T ss_pred HHHHHHHHHc-CCCCEEEECCCCCCCC
Confidence 55543 11 2556666555444434
No 369
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=22.50 E-value=62 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=27.2
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
.++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 71 ~idp~~Gt~~df~~Lv~~aH~--~Gi~VilD~V~ 102 (557)
T 1zja_A 71 EVMKEYGTMEDFDRLMAELKK--RGMRLMVDVVI 102 (557)
T ss_dssp EECTTTCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred ccCcccCCHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 345567888999999999999 99999999764
No 370
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=22.50 E-value=3e+02 Score=22.00 Aligned_cols=120 Identities=15% Similarity=0.064 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH-HHHHHHHHhCC--ceEEEeCCCCCCCC
Q 017726 46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL-LWIDQQQRLNF--NVDVVESDWGEGAK 122 (367)
Q Consensus 46 ~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d 122 (367)
++-..+....+ +..|+=.+.|++.....+...+.++.+|+..+..-... .....++..|. ++..+.. |
T Consensus 50 ~~l~~l~~~~~---~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g------d 120 (242)
T 3r3h_A 50 QFMQMLIRLTR---AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG------P 120 (242)
T ss_dssp HHHHHHHHHHT---CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEES------C
T ss_pred HHHHHHHhhcC---cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc------C
Confidence 44444444433 33455444455444444444444466777776632221 12233444554 3444432 3
Q ss_pred HHHHHHHH-hccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 123 LDVLASKL-AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 123 ~e~l~~~i-~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
..++...+ .+......++|++..+ ......-++.+.++++ .|.++++|.+..
T Consensus 121 a~~~l~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~Lk---pGG~lv~d~~~~ 173 (242)
T 3r3h_A 121 ALDTLHSLLNEGGEHQFDFIFIDAD--KTNYLNYYELALKLVT---PKGLIAIDNIFW 173 (242)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEEESC--GGGHHHHHHHHHHHEE---EEEEEEEECSSS
T ss_pred HHHHHHHHhhccCCCCEeEEEEcCC--hHHhHHHHHHHHHhcC---CCeEEEEECCcc
Confidence 43332222 1100034577777643 1111111333333333 566666666543
No 371
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.33 E-value=2.8e+02 Score=21.55 Aligned_cols=85 Identities=7% Similarity=-0.094 Sum_probs=43.4
Q ss_pred EecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEE
Q 017726 64 LIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 64 ~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~ 143 (367)
+...+-.+++..+-. + ..|..|+++..+... .+-+..+++++.++.. .-++.+++.+-.....++-++
T Consensus 33 i~~~~l~~~v~~a~~-~-~~~~dVIISRGgta~----~lr~~~~iPVV~I~~s------~~Dil~al~~a~~~~~kIavv 100 (196)
T 2q5c_A 33 TKTASLTRASKIAFG-L-QDEVDAIISRGATSD----YIKKSVSIPSISIKVT------RFDTMRAVYNAKRFGNELALI 100 (196)
T ss_dssp EEECCHHHHHHHHHH-H-TTTCSEEEEEHHHHH----HHHTTCSSCEEEECCC------HHHHHHHHHHHGGGCSEEEEE
T ss_pred EEECCHHHHHHHHHH-h-cCCCeEEEECChHHH----HHHHhCCCCEEEEcCC------HhHHHHHHHHHHhhCCcEEEE
Confidence 455555677776554 3 567678888763322 1223456777777754 223333322210012355566
Q ss_pred EecCCCccccccHHHHHHHHH
Q 017726 144 VHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 144 ~~~~n~tG~~~~~~~i~~~~~ 164 (367)
..++... .++.+.++..
T Consensus 101 g~~~~~~----~~~~~~~ll~ 117 (196)
T 2q5c_A 101 AYKHSIV----DKHEIEAMLG 117 (196)
T ss_dssp EESSCSS----CHHHHHHHHT
T ss_pred eCcchhh----HHHHHHHHhC
Confidence 6554333 3555666654
No 372
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=22.26 E-value=2.8e+02 Score=21.66 Aligned_cols=83 Identities=10% Similarity=-0.015 Sum_probs=42.7
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEE
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI 141 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv 141 (367)
+++| ||+.++-..+ ..+...|-+|++..-.. .......+..+.++..+..+-. |.+.+++.+++.. ...+++
T Consensus 4 vlVT-Gas~gIG~~~a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~-~~~d~l 76 (230)
T 3guy_A 4 IVIT-GASSGLGAELAKLYDAEGKATYLTGRSE--SKLSTVTNCLSNNVGYRARDLA---SHQEVEQLFEQLD-SIPSTV 76 (230)
T ss_dssp EEEE-STTSHHHHHHHHHHHHTTCCEEEEESCH--HHHHHHHHTCSSCCCEEECCTT---CHHHHHHHHHSCS-SCCSEE
T ss_pred EEEe-cCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHhhccCeEeecCC---CHHHHHHHHHHHh-hcCCEE
Confidence 4444 4455554433 34566777777765522 2233344444555555554422 6788888877532 233566
Q ss_pred EEEecCCCccc
Q 017726 142 CIVHNETATGV 152 (367)
Q Consensus 142 ~~~~~~n~tG~ 152 (367)
+.+....+.+.
T Consensus 77 v~~Ag~~~~~~ 87 (230)
T 3guy_A 77 VHSAGSGYFGL 87 (230)
T ss_dssp EECCCCCCCSC
T ss_pred EEeCCcCCCCc
Confidence 55544333343
No 373
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=22.25 E-value=53 Score=30.02 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=25.3
Q ss_pred CCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 147 ETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 147 ~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
+...|+..+++++++.||+ +|+.||+|.+.
T Consensus 75 dp~~Gt~~d~~~Lv~~aH~--~Gi~VilD~V~ 104 (488)
T 1wza_A 75 NPDYGTLEDFHKLVEAAHQ--RGIKVIIDLPI 104 (488)
T ss_dssp CGGGCCHHHHHHHHHHHHH--TTCEEEEECCC
T ss_pred CcccCCHHHHHHHHHHHHH--CCCEEEEEecc
Confidence 3456888889999999999 99999999763
No 374
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=22.22 E-value=2.1e+02 Score=20.07 Aligned_cols=29 Identities=3% Similarity=-0.019 Sum_probs=18.9
Q ss_pred HHHhCCceEEEeCCCCCCCCHHHHHHHHh
Q 017726 103 QQRLNFNVDVVESDWGEGAKLDVLASKLA 131 (367)
Q Consensus 103 ~~~~g~~~~~v~~~~~~~~d~e~l~~~i~ 131 (367)
++..|.++..+....-+.+|.+.+.+.++
T Consensus 35 L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~ 63 (118)
T 3ju3_A 35 LKEEGISANLLYLKMFSPFPTEFVKNVLS 63 (118)
T ss_dssp HHHTTCCEEEEEECSSCSCCHHHHHHHHT
T ss_pred HHHCCCceEEEEECeEecCCHHHHHHHHc
Confidence 34456777766666555667777777775
No 375
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=22.19 E-value=48 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.6
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++...|...+++++++.||+ +|+.|++|.+.
T Consensus 76 i~~~~Gt~~~~~~lv~~~h~--~Gi~vi~D~V~ 106 (449)
T 3dhu_A 76 INPEYGTLADFKALTDRAHE--LGMKVMLDIVY 106 (449)
T ss_dssp CCGGGCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred cCcccCCHHHHHHHHHHHHH--CCCEEEEEEcc
Confidence 33456777889999999999 99999999763
No 376
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural genomics center for infectious D ssgcid, tRNA methyltransferase; 1.70A {Mycobacterium abscessus}
Probab=22.09 E-value=78 Score=25.71 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=33.2
Q ss_pred CHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 122 KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 122 d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
.+|-+.++++.....++++|+++ |.|..++-+...+++++ .+++++|
T Consensus 66 ~~ePl~~Al~~~~~~~~~vI~ls----P~G~~f~Q~~a~eLa~~--~~lillC 112 (246)
T 3quv_A 66 KPTVWGDALDEICTSETLLVVPT----PAGYPFTQETAWQWSTE--DHLVIAC 112 (246)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEEE----EEEEECCHHHHHHHTTC--SEEEEEC
T ss_pred eHHHHHHHHHHHHhcCCcEEEEC----CCCCccCHHHHHHHhCC--CCEEEEe
Confidence 56777777665321244566665 58999999999999987 6777665
No 377
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.09 E-value=2.9e+02 Score=22.32 Aligned_cols=67 Identities=9% Similarity=0.071 Sum_probs=36.4
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE-Eee
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL-VDG 176 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi-~D~ 176 (367)
+...++..|.++.....+.+..-..+.++.++. .+++.|++.... + .......+.+++ .+++++ +|.
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~----~~vdgiI~~~~~-~----~~~~~~~~~~~~--~~iPvV~~~~ 97 (293)
T 3l6u_A 30 FKAEAKANKYEALVATSQNSRISEREQILEFVH----LKVDAIFITTLD-D----VYIGSAIEEAKK--AGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH----TTCSEEEEECSC-T----TTTHHHHHHHHH--TTCCEEEESS
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH----cCCCEEEEecCC-h----HHHHHHHHHHHH--cCCCEEEecC
Confidence 345677789998887765322111234555554 467888776432 1 123344455555 677654 554
No 378
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=22.05 E-value=2.6e+02 Score=22.86 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHHHHHHhCCceEEE-eCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE-Eee
Q 017726 99 WIDQQQRLNFNVDVV-ESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL-VDG 176 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v-~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi-~D~ 176 (367)
+...++..|.++..+ ..+.+..--.+.++.++. .+++.|++..... . ......+.+++ .+++++ +|.
T Consensus 26 i~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~----~~vdgiIi~~~~~-~----~~~~~~~~~~~--~~iPvV~~~~ 94 (305)
T 3g1w_A 26 FEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIA----KNPAGIAISAIDP-V----ELTDTINKAVD--AGIPIVLFDS 94 (305)
T ss_dssp HHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHH----HCCSEEEECCSST-T----TTHHHHHHHHH--TTCCEEEESS
T ss_pred HHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHH----hCCCEEEEcCCCH-H----HHHHHHHHHHH--CCCcEEEECC
Confidence 345667789888874 322211111233444454 3568887754321 1 22334444555 677554 564
Q ss_pred e
Q 017726 177 V 177 (367)
Q Consensus 177 ~ 177 (367)
.
T Consensus 95 ~ 95 (305)
T 3g1w_A 95 G 95 (305)
T ss_dssp C
T ss_pred C
Confidence 3
No 379
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=21.74 E-value=1.4e+02 Score=25.54 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
+|.+.+.+.+++ ++.+|++++.+
T Consensus 241 ~d~~~i~~~~~~--~~~vvvvEe~~ 263 (324)
T 1w85_B 241 LDIETIIGSVEK--TGRAIVVQEAQ 263 (324)
T ss_dssp CCHHHHHHHHHH--HSCEEEEEEEE
T ss_pred CCHHHHHHHHhh--CCcEEEEeCCC
Confidence 455666666666 44444444443
No 380
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=21.63 E-value=56 Score=30.61 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=26.5
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 85 idp~~Gt~~df~~lv~~aH~--~Gi~VilD~V~ 115 (570)
T 1m53_A 85 IMKEYGTMEDFDSLVAEMKK--RNMRLMIDVVI 115 (570)
T ss_dssp ECGGGCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred cCcccCCHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 44467888899999999999 99999999764
No 381
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=21.35 E-value=55 Score=29.89 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=29.4
Q ss_pred EEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
..-...++...|+..+++++++.||+ +|+.||.|.+.
T Consensus 89 ~~dy~~idp~~Gt~~df~~Lv~~aH~--~Gi~VilD~V~ 125 (488)
T 2wc7_A 89 THDYYQVDPMLGGNEAFKELLDAAHQ--RNIKVVLDGVF 125 (488)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CcCccccCcccCCHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 33334455567888999999999999 99999999764
No 382
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=21.34 E-value=3.3e+02 Score=22.33 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=29.8
Q ss_pred hCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 106 LNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 106 ~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
.|++++..+.. |.+.+.++++ ....|+.+..... +.....+.+.|++ .|
T Consensus 55 ~~v~~v~~D~~-----d~~~l~~~~~-----~~d~vi~~a~~~~---~~~~~~l~~aa~~--~g 103 (307)
T 2gas_A 55 LGVILLEGDIN-----DHETLVKAIK-----QVDIVICAAGRLL---IEDQVKIIKAIKE--AG 103 (307)
T ss_dssp TTCEEEECCTT-----CHHHHHHHHT-----TCSEEEECSSSSC---GGGHHHHHHHHHH--HC
T ss_pred CCCEEEEeCCC-----CHHHHHHHHh-----CCCEEEECCcccc---cccHHHHHHHHHh--cC
Confidence 46665554443 6788888886 3466665543211 3445678888887 55
No 383
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=21.32 E-value=3.7e+02 Score=22.58 Aligned_cols=97 Identities=16% Similarity=0.066 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HHHHHHHhCC-ceEEEeCCCCCCCCH
Q 017726 46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNF-NVDVVESDWGEGAKL 123 (367)
Q Consensus 46 ~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~-~~~~v~~~~~~~~d~ 123 (367)
+....++..++..+.+.|+=.+.|++.....+.....++..|+..+....... ....++..|. ++..+.. |.
T Consensus 105 ~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~------D~ 178 (315)
T 1ixk_A 105 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS------SS 178 (315)
T ss_dssp HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS------CG
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEEC------Ch
Confidence 34455567777776666776677777766656554545456776666322221 3334455576 4444432 22
Q ss_pred HHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 124 DVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 124 e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
..+.. .. ...+.|++..|-+.+|.+
T Consensus 179 ~~~~~-~~----~~fD~Il~d~Pcsg~g~~ 203 (315)
T 1ixk_A 179 LHIGE-LN----VEFDKILLDAPCTGSGTI 203 (315)
T ss_dssp GGGGG-GC----CCEEEEEEECCTTSTTTC
T ss_pred hhccc-cc----ccCCEEEEeCCCCCcccc
Confidence 22211 11 346788888777777765
No 384
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=21.28 E-value=3.4e+02 Score=22.25 Aligned_cols=43 Identities=9% Similarity=0.007 Sum_probs=27.0
Q ss_pred CHHHHHHHHhccCCCCccEEEEEecCCCcc-ccccHHHHHHHHHhcCCC-cE
Q 017726 122 KLDVLASKLAADTAHTIKAICIVHNETATG-VTNNLSKVRKLLDEYRHP-AL 171 (367)
Q Consensus 122 d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG-~~~~~~~i~~~~~~~~~~-~~ 171 (367)
|.+.+.++++ .+..|+.+......+ .+.-...+.+.|++ .+ +.
T Consensus 66 d~~~l~~~~~-----~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~--~g~v~ 110 (313)
T 1qyd_A 66 DHQRLVDALK-----QVDVVISALAGGVLSHHILEQLKLVEAIKE--AGNIK 110 (313)
T ss_dssp CHHHHHHHHT-----TCSEEEECCCCSSSSTTTTTHHHHHHHHHH--SCCCS
T ss_pred CHHHHHHHHh-----CCCEEEECCccccchhhHHHHHHHHHHHHh--cCCCc
Confidence 6888988886 356666554432221 33446778888888 66 53
No 385
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.24 E-value=2.8e+02 Score=23.03 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=38.0
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE-Eee
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL-VDG 176 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi-~D~ 176 (367)
+...++..|.++.....+.+..--.+.++..+. .+++.|++.... + .......+.+++ .|++++ +|.
T Consensus 25 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~----~~vdgiIi~~~~-~----~~~~~~~~~~~~--~giPvV~~~~ 92 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT----KGVKVLVIASID-G----TTLSDVLKQAGE--QGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH----HTCSEEEECCSS-G----GGGHHHHHHHHH--TTCEEEEESS
T ss_pred HHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH----cCCCEEEEEcCC-c----hhHHHHHHHHHH--CCCCEEEECC
Confidence 345677789988877644321111234555555 356888776432 1 123445555666 788765 564
No 386
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=21.06 E-value=67 Score=30.92 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=30.7
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 139 ~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
...-...++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 93 d~~Dy~~idp~~Gt~~df~~Lv~~aH~--~GikVilD~V~ 130 (686)
T 1qho_A 93 WTRDFKQIEEHFGNWTTFDTLVNDAHQ--NGIKVIVDFVP 130 (686)
T ss_dssp SEEEEEEECTTTCCHHHHHHHHHHHHH--TTCEEEEEECT
T ss_pred CcccccccCcccCCHHHHHHHHHHHHH--CCCEEEEEecc
Confidence 344445556678999999999999999 99999999763
No 387
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=20.92 E-value=95 Score=21.47 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=34.4
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCC
Q 017726 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQ 200 (367)
Q Consensus 139 ~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~ 200 (367)
|++++|...-.|+.+ .+++.+.+++ +|+-+-++.+...-... ...+.|+++.+++
T Consensus 5 kIll~Cg~G~sTS~l--~~k~~~~~~~--~gi~~~i~a~~~~~~~~---~~~~~Dvil~~pq 59 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLL--VSKMRAQAEK--YEVPVIIEAFPETLAGE---KGQNADVVLLGPQ 59 (106)
T ss_dssp EEEEECSSSTTTHHH--HHHHHHHHHH--SCCSEEEEEECSSSTTH---HHHHCSEEEECTT
T ss_pred EEEEECCCchhHHHH--HHHHHHHHHH--CCCCeEEEEecHHHHHh---hccCCCEEEEccc
Confidence 678888866666633 3489999999 88876666553321111 1124688877654
No 388
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=20.87 E-value=2.2e+02 Score=20.71 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=39.6
Q ss_pred hCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEe-cCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 106 LNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVH-NETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 106 ~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~-~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
.|+++..+..-. ++ + .++.+.|.+ .+..+|+... |.++.....|...|++.|-. ++++++..
T Consensus 48 ~Gl~v~~v~k~~~eG--~-p~I~d~I~~---geIdlVInt~~pl~~~~h~~D~~~IrR~A~~--~~IP~~T~ 111 (134)
T 2xw6_A 48 TGLTVEKLLSGPLGG--D-QQMGARVAE---GRILAVIFFRDPLTAQPHEPDVQALLRVCDV--HGVPLATN 111 (134)
T ss_dssp HCCCCEECSCGGGTH--H-HHHHHHHHT---TCEEEEEEECCTTTCCTTSCCSHHHHHHHHH--HTCCEECS
T ss_pred hCceEEEEEecCCCC--c-chHHHHHHC---CCccEEEEccCcccCCCccchHHHHHHHHHH--cCCCeEcC
Confidence 688877775322 33 2 357777775 3566665443 11333335688999999999 99998865
No 389
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=20.85 E-value=68 Score=30.87 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=28.9
Q ss_pred EEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
..-...++...|+..+++++++.||+ +|+.||+|.+
T Consensus 102 ~~dy~~idp~~Gt~~dfk~Lv~~aH~--~GI~VilD~V 137 (686)
T 1d3c_A 102 ARDFKKTNPAYGTIADFQNLIAAAHA--KNIKVIIDFA 137 (686)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred cccccccCcccCCHHHHHHHHHHHHH--CCCEEEEEeC
Confidence 33344455667888899999999999 9999999976
No 390
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=20.84 E-value=3.2e+02 Score=21.79 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=41.2
Q ss_pred EEecCChhHHHHH-HHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCc
Q 017726 63 FLIPTTGTGAWES-ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTI 138 (367)
Q Consensus 63 v~~~~ggt~al~~-~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~ 138 (367)
+++ .|++.++-. +...+...|-+|++..-.. .......+..+.++..+..+-. |.+++++.+++ .. .+.
T Consensus 12 vlI-TGas~gIG~~~a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~-g~i 84 (261)
T 3n74_A 12 ALI-TGAGSGFGEGMAKRFAKGGAKVVIVDRDK--AGAERVAGEIGDAALAVAADIS---KEADVDAAVEAALSKF-GKV 84 (261)
T ss_dssp EEE-ETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHCTTEEEEECCTT---SHHHHHHHHHHHHHHH-SCC
T ss_pred EEE-ECCCchHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHhCCceEEEEecCC---CHHHHHHHHHHHHHhc-CCC
Confidence 444 455555543 3344566787887775522 2233444556777777776533 45555555443 11 245
Q ss_pred cEEEEEec
Q 017726 139 KAICIVHN 146 (367)
Q Consensus 139 ~lv~~~~~ 146 (367)
++++.+..
T Consensus 85 d~li~~Ag 92 (261)
T 3n74_A 85 DILVNNAG 92 (261)
T ss_dssp CEEEECCC
T ss_pred CEEEECCc
Confidence 66665543
No 391
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=20.83 E-value=4.2e+02 Score=24.15 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=52.5
Q ss_pred hHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE--EEEeCCcch--
Q 017726 21 PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI--ISFLIGQFS-- 96 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v--l~~~~~~~~-- 96 (367)
...+++.+.+..............++..+.+++.++-+ ..++..+||-++..++....-. |..+ +..+.+...
T Consensus 173 g~~ll~~F~~~~~~~~~~~~~~~~~~~i~~ir~~~~~~--kvvvalSGGvDSsvla~ll~~~-g~~v~av~vd~g~~~~~ 249 (503)
T 2ywb_A 173 GMQILENFLELAGVKRDWTPEHVLEELLREVRERAGKD--RVLLAVSGGVDSSTLALLLAKA-GVDHLAVFVDHGLLRLG 249 (503)
T ss_dssp HHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTS--EEEEEECSSHHHHHHHHHHHHH-TCEEEEEEEECSCSCTT
T ss_pred cHHHHHHHHHHhhhhccccchhhhHHHHHhhhhhccCc--cEEEEecCCcchHHHHHHHHHc-CCeEEEEEEeCCCCChH
Confidence 35566665543333323334566777788888887643 3467778887665544332111 5544 334443311
Q ss_pred H--HHHHHHHHhCCceEEEeCC
Q 017726 97 L--LWIDQQQRLNFNVDVVESD 116 (367)
Q Consensus 97 ~--~~~~~~~~~g~~~~~v~~~ 116 (367)
. .....++.+|+++..++.+
T Consensus 250 e~~~v~~~~~~lgi~~~vv~~~ 271 (503)
T 2ywb_A 250 EREEVEGALRALGVNLLVVDAK 271 (503)
T ss_dssp HHHHHHHHHHHTTCCEEEEECH
T ss_pred HHHHHHHHHHHhCCCEEEEECc
Confidence 1 1446677789999988754
No 392
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=20.75 E-value=3.6e+02 Score=22.29 Aligned_cols=86 Identities=15% Similarity=0.042 Sum_probs=42.3
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEeCCcchHH-HHHHHHHhC-CceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFLIGQFSLL-WIDQQQRLN-FNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g-~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
++++.||+.++-..+ ..+...|-+|++..-...... .....+..+ .++..+..+-. |.+.+++++++ .. .
T Consensus 43 ~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~-g 118 (293)
T 3rih_A 43 SVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVS---DPGSCADAARTVVDAF-G 118 (293)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTT---CHHHHHHHHHHHHHHH-S
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCC---CHHHHHHHHHHHHHHc-C
Confidence 445555666665443 446667878877655322221 212222223 45666665532 55555555443 11 2
Q ss_pred CccEEEEEecCCCccc
Q 017726 137 TIKAICIVHNETATGV 152 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG~ 152 (367)
+.++++-+....+.+.
T Consensus 119 ~iD~lvnnAg~~~~~~ 134 (293)
T 3rih_A 119 ALDVVCANAGIFPEAR 134 (293)
T ss_dssp CCCEEEECCCCCCCCC
T ss_pred CCCEEEECCCCCCCCC
Confidence 5566665544444343
No 393
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=20.62 E-value=3.8e+02 Score=22.71 Aligned_cols=73 Identities=10% Similarity=-0.031 Sum_probs=46.0
Q ss_pred cCCCCCeEEEEeCCcchH--H---HHHHHHHhCCceEEEeCCCC--CCC---C---HHHHHHHHhccCCCCccEEEEEec
Q 017726 80 TLSPGDRIISFLIGQFSL--L---WIDQQQRLNFNVDVVESDWG--EGA---K---LDVLASKLAADTAHTIKAICIVHN 146 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~--~---~~~~~~~~g~~~~~v~~~~~--~~~---d---~e~l~~~i~~~~~~~~~lv~~~~~ 146 (367)
.+++||+|-+..|..... . .....+..|.+++.-+.-.. +.+ | .++|.+++.+ +.+++|+..-.
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~D---p~i~aI~~~rG 89 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDM---PDITAVWCLRG 89 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHS---TTEEEEEESCC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhC---CCCCEEEEccC
Confidence 367899998888865432 1 23455668998886554321 111 2 3567777764 57889988876
Q ss_pred CCCcccccc
Q 017726 147 ETATGVTNN 155 (367)
Q Consensus 147 ~n~tG~~~~ 155 (367)
..-+-.+.|
T Consensus 90 Gyga~rlLp 98 (311)
T 1zl0_A 90 GYGCGQLLP 98 (311)
T ss_dssp SSCGGGGTT
T ss_pred CcCHHHHhh
Confidence 666656665
No 394
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=20.51 E-value=62 Score=28.87 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.5
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++...|...+++++++.||+ +|+.||+|.+.
T Consensus 67 ~~~~~G~~~d~~~lv~~~h~--~Gi~VilD~V~ 97 (422)
T 1ua7_A 67 GNRYLGTEQEFKEMCAAAEE--YGIKVIVDAVI 97 (422)
T ss_dssp EETTTEEHHHHHHHHHHHHT--TTCEEEEEECC
T ss_pred cCCCCCCHHHHHHHHHHHHH--CCCEEEEEecc
Confidence 34457999999999999999 99999999764
No 395
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.45 E-value=97 Score=21.59 Aligned_cols=58 Identities=7% Similarity=-0.000 Sum_probs=34.7
Q ss_pred CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCC
Q 017726 136 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQ 200 (367)
Q Consensus 136 ~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~ 200 (367)
++.+++++|...-.|+.+ ..++.+.+++ +|+-+-+.+... +. ++-...+.|+++.+++
T Consensus 5 ~~mkIlL~C~aGmSTsll--v~km~~~a~~--~gi~v~i~a~~~-~~--~~~~~~~~DvvLLgPQ 62 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQL--ANAINEGANL--TEVRVIANSGAY-GA--HYDIMGVYDLIILAPQ 62 (108)
T ss_dssp CCEEEEEEESSSSHHHHH--HHHHHHHHHH--HTCSEEEEEEET-TS--CTTTGGGCSEEEECGG
T ss_pred cCceEEEECCCCCCHHHH--HHHHHHHHHH--CCCceEEEEcch-HH--HHhhccCCCEEEEChH
Confidence 456888899876666653 3578888888 776655544211 11 1111125788877655
No 396
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=20.44 E-value=1.6e+02 Score=25.10 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=12.7
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
+|.+.+.+.+++ ++-++++++.+
T Consensus 242 ~d~~~i~~~~~~--~~~vv~vEe~~ 264 (324)
T 1umd_B 242 WDYEAVMNSVAK--TGRVVLVSDAP 264 (324)
T ss_dssp CCHHHHHHHHHH--HSCEEEEEEEE
T ss_pred CCHHHHHHHHhc--CCeEEEEecCC
Confidence 455666666666 44444555443
No 397
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=20.44 E-value=3.6e+02 Score=22.19 Aligned_cols=54 Identities=7% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCHHHHHHHHhccC-CCCccEEEEEecCCCccccc-cHHHHHHHHHhcCCCcEEEEeee
Q 017726 121 AKLDVLASKLAADT-AHTIKAICIVHNETATGVTN-NLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 121 ~d~e~l~~~i~~~~-~~~~~lv~~~~~~n~tG~~~-~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
++.+++....+... -...++++++. ..+.+... -+.++.+.+++ +++.+++|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~~~~a~~--~g~~v~~D~~ 163 (306)
T 2jg5_A 108 ITSTQFEQLLQQIKNTTSEDIVIVAG-SVPSSIPSDAYAQIAQITAQ--TGAKLVVDAE 163 (306)
T ss_dssp CCHHHHHHHHHHHTTCCTTCEEEEES-CCCTTSCTTHHHHHHHHHHH--HCCEEEEECC
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeC-CCCCCCChHHHHHHHHHHHH--CCCEEEEECC
Confidence 45566654332100 02456776652 22223211 25667777887 8899999964
No 398
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=20.40 E-value=1.6e+02 Score=25.30 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=31.4
Q ss_pred eEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 62 PFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 62 ~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
.|+-.++|..+.-.+..+-. -|=++.+..|...+..-....+.+|++++.++.
T Consensus 89 ~Vv~aSsGN~g~alA~~aa~-~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 89 TLIEPTSGNMGISMAFMAAM-KGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp EEEEECSSHHHHHHHHHHHH-HTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred EEEEeCCcHHHHHHHHHHHH-cCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 47777888877776665421 132333333433443333567889999988864
No 399
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=20.39 E-value=1.6e+02 Score=25.24 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=10.7
Q ss_pred hCCceEEEeCCCCCCCCHHHHHHHHh
Q 017726 106 LNFNVDVVESDWGEGAKLDVLASKLA 131 (367)
Q Consensus 106 ~g~~~~~v~~~~~~~~d~e~l~~~i~ 131 (367)
.|+++..+....-..+|.+.+.+.+.
T Consensus 241 ~Gi~v~vi~~~~l~P~d~~~i~~~~~ 266 (338)
T 1qs0_B 241 SGVDAEVIDLRSLWPLDLDTIVESVK 266 (338)
T ss_dssp HCCCCEEEECSEEESCCHHHHHHHHH
T ss_pred cCCCEEEEeecccCCCCHHHHHHHHh
Confidence 34444444433223344444444443
No 400
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=20.28 E-value=3.9e+02 Score=22.46 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=23.6
Q ss_pred CccEEEEEecCCCccccc-cHHHHHHHHHhcCCCcEEEEeee
Q 017726 137 TIKAICIVHNETATGVTN-NLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG~~~-~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
..++++++. ..+.+... -+.++.+.+++ +|+.+++|..
T Consensus 147 ~~~~v~~~g-~~~~~~~~~~~~~~~~~a~~--~g~~v~~D~~ 185 (330)
T 2jg1_A 147 KVEAVAISG-SLPKGLNQDYYAQIIERCQN--KGVPVILDCS 185 (330)
T ss_dssp GCSEEEEES-CCCBTSCTTHHHHHHHHHHT--TTCCEEEECC
T ss_pred CCCEEEEEC-CCCCCCCHHHHHHHHHHHHH--CCCEEEEECC
Confidence 347777653 22333222 25567777887 8999999965
No 401
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=20.23 E-value=1.2e+02 Score=25.23 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=25.7
Q ss_pred CccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 137 TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
++++|+++ |.|..++-+...+++++ .+++++|
T Consensus 106 ~~~vI~ls----P~G~~f~Q~~a~~La~~--~~liliC 137 (276)
T 4h3z_A 106 GARVVMMS----PQGATLNHDKVMRFAAE--PGLILLC 137 (276)
T ss_dssp SCEEEEEE----EEEEECCHHHHHHHHTS--SEEEEEC
T ss_pred CceEEEEC----CCCCeeehHHHHHhhcc--CCEEEEe
Confidence 45677765 58999999999999987 7777765
No 402
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=20.22 E-value=3.3e+02 Score=21.65 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=42.4
Q ss_pred EEecCChhHHHHHHH-HccCCCCCeEEEEe-CCcchH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCC
Q 017726 63 FLIPTTGTGAWESAL-TNTLSPGDRIISFL-IGQFSL-LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAH 136 (367)
Q Consensus 63 v~~~~ggt~al~~~~-~~~~~~gd~vl~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~ 136 (367)
.++..|++.++-..+ ..+.+.|-+|++.. ...... ......+..+.++..+..+-. |.+.+++.+++ .. .
T Consensus 15 ~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~~-g 90 (256)
T 3ezl_A 15 IAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVG---DWDSTKQAFDKVKAEV-G 90 (256)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTT---CHHHHHHHHHHHHHHT-C
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCC---CHHHHHHHHHHHHHhc-C
Confidence 445566666665443 34566787777754 211111 222334445666776665532 55555555543 11 2
Q ss_pred CccEEEEEecCCC
Q 017726 137 TIKAICIVHNETA 149 (367)
Q Consensus 137 ~~~lv~~~~~~n~ 149 (367)
+.++++.+.....
T Consensus 91 ~id~lv~~Ag~~~ 103 (256)
T 3ezl_A 91 EIDVLVNNAGITR 103 (256)
T ss_dssp CEEEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 4566665544333
No 403
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=20.20 E-value=61 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCCcEEEEeee
Q 017726 156 LSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
-.+|++++++ +|++++.|..
T Consensus 29 A~~I~e~A~e--~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANE--VGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHH--TTCCEEECHH
T ss_pred HHHHHHHHHH--cCCCEEECHH
Confidence 4579999999 9999999953
No 404
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=20.06 E-value=73 Score=30.64 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=28.5
Q ss_pred EEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
..-...++...|+..+++++++.||+ +|+.||+|.+
T Consensus 98 ~~Dy~~idp~~Gt~~df~~Lv~~aH~--~GIkVilD~V 133 (680)
T 1cyg_A 98 ARDFKKPNPFFGTLSDFQRLVDAAHA--KGIKVIIDFA 133 (680)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred chhccccCcccCCHHHHHHHHHHHHH--CCCEEEEEeC
Confidence 33334455567888899999999999 9999999975
No 405
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=20.04 E-value=64 Score=30.13 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=26.6
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 71 id~~~Gt~~df~~lv~~~h~--~Gi~VilD~V~ 101 (558)
T 1uok_A 71 IMNEFGTMEDWDELLHEMHE--RNMKLMMDLVV 101 (558)
T ss_dssp ECGGGCCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred cCcccCCHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 44467888899999999999 99999999764
No 406
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=20.04 E-value=67 Score=29.97 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=26.4
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 71 id~~~Gt~~d~~~lv~~~h~--~Gi~vilD~V~ 101 (555)
T 2ze0_A 71 IMDEFGTMDDFDELLAQAHR--RGLKVILDLVI 101 (555)
T ss_dssp ECGGGCCHHHHHHHHHHHHH--TTCEEEEEEEC
T ss_pred cCcccCCHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 44467888899999999999 99999999764
No 407
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=20.02 E-value=73 Score=30.65 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=29.2
Q ss_pred EEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
..-...++...|+..+++++++.||+ +|+.||+|.+.
T Consensus 103 ~~dy~~idp~~Gt~~dfk~Lv~~aH~--~GikVilD~V~ 139 (683)
T 3bmv_A 103 ARDFKRTNPYFGSFTDFQNLINTAHA--HNIKVIIDFAP 139 (683)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHH--TTCEEEEEECT
T ss_pred cccccccCcccCCHHHHHHHHHHHHH--CCCEEEEEEcc
Confidence 33344455567888899999999999 99999999763
Done!