RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017726
(367 letters)
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 465 bits (1199), Expect = e-164
Identities = 87/367 (23%), Positives = 158/367 (43%), Gaps = 24/367 (6%)
Query: 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
P L PGP++ +V+RAM+ PA+ ++ + +F+T + L
Sbjct: 9 LNPPSRLLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTML 68
Query: 65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
+ T E+ L + + PGD+++ + G+F L + +R V +E WGE D
Sbjct: 69 VDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPD 128
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
+ + + + V +T+T + L+++ ++ R+ ALF D +S+
Sbjct: 129 QVEDAVK---RIRPRLLLTVQGDTSTTMLQPLAELGEICR--RYDALFYTDATASLGGNP 183
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV-------------- 230
D WG+D G QK L P+G + S + EA + K V
Sbjct: 184 LETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243
Query: 231 ----FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR 286
+FD + ++ +T + L+G R LI +EGL+ I RH+ G A
Sbjct: 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALV 303
Query: 287 LAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF 346
++A GL+ + + V V++P IN + + + + + +G + GKV+
Sbjct: 304 KGIQAMGLETFG-DLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVW 362
Query: 347 RIGHLGH 353
RIG +G+
Sbjct: 363 RIGTMGY 369
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 461 bits (1188), Expect = e-163
Identities = 90/357 (25%), Positives = 165/357 (46%), Gaps = 10/357 (2%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
+ + PGP + +V+ AM + + + ++ IF+T + +
Sbjct: 16 IPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVS 75
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
+ E+ L+N L GDR++ + G ++ ++ +R +V +E L+ L
Sbjct: 76 GSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETL 135
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
A A H K + + H ++++G+ L V ++ +H L +VD V+S+C + F
Sbjct: 136 A---RAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICH--QHDCLLIVDAVASLCGVPFY 190
Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW-----KDYIKFY 241
MD+W ID TG+QK L P G+ + SPKAL+ + ++ F W +Y Y
Sbjct: 191 MDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCY 250
Query: 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
+ + +T + L++ LR AL I EEGLEN I+R + + GL +
Sbjct: 251 DEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDP 310
Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
TVT +++P ++ ++ + A ++L + GL GK +R+G +G + V
Sbjct: 311 RHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQ 367
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 460 bits (1187), Expect = e-163
Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 10/358 (2%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
+ + L PGP ++ +V+ A + + + + + + + I+ +F+T +
Sbjct: 15 LSKPLSVPTRLLLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNP 74
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
++ +G A E+AL N L PGD ++ G + + + R+ V + GE
Sbjct: 75 LTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEH 134
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
L + LA H + +VH E++TGV L +L R+ L LVD V+S+
Sbjct: 135 YTLQEVEEGLAQ---HKPVLLFLVHGESSTGVVQPLDGFGELCH--RYQCLLLVDSVASL 189
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--FFDWKDYI 238
+ MD+ GID+ + SQK L+ P G+ ++ + KA + K+ V + D
Sbjct: 190 GGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLA 249
Query: 239 KFY---NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
K + +T + LY LR +L LI E+GLEN RHR ++ GLK
Sbjct: 250 KLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLK 309
Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
+ E T+T V VP+ N +IV +++ + GL +V RIG LG+
Sbjct: 310 FFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 367
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 460 bits (1185), Expect = e-163
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 7/353 (1%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
K LF GPV +V+ M +RS + +E +++ + G L+P
Sbjct: 18 KPKYKLFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEVLLVP 77
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
++GTG E+++ N +S G +++ +IG F + + + V+E + G+ K + L
Sbjct: 78 SSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDL 137
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
L + ++A+ I +NET+TGV N L ++ K+ H L VD VS++ D +
Sbjct: 138 DDALRKN--PDVEAVTITYNETSTGVLNPLPELAKVAK--EHDKLVFVDAVSAMGGADIK 193
Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246
D+WG+DV + SQKA +P G+ I S + LE ++ +FD Y+K+
Sbjct: 194 FDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKES 253
Query: 247 WPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
P TP + ++G+ AL +I + G E +E + + K R V GL + S
Sbjct: 254 TPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILA-EPGHES 312
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
T+TAV+ P I E V A ++ L G V K FRIGH+G++
Sbjct: 313 PTITAVLTPPGIKGDE-VYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFED 364
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 459 bits (1183), Expect = e-162
Identities = 89/358 (24%), Positives = 152/358 (42%), Gaps = 7/358 (1%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
M Y GPV+ +V+R + R PA L + +++ +K + +
Sbjct: 1 MRYPEHADPVITLTAGPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLS-N 59
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
P ++ E+A + +SP D +++ G + + +R + ++ +E + E
Sbjct: 60 KPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEA 119
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
+A L A I + + H++T +G N + + L+ H A +VD VSS
Sbjct: 120 IDPQAVADMLKAH--PEITVVSVCHHDTPSGTINPIDAIGALVSA--HGAYLIVDAVSSF 175
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV--RVFFDWKDYI 238
+ ++ D+ +TG K L P G+ ++ S +A K D+
Sbjct: 176 GGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWE 235
Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298
++ +P+TPS+ + GL ALDL EG E V RH KA R V A GL
Sbjct: 236 NAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWA 295
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
+ S T TAV P ++ + + A RY + G + GK+ RIGH+G +
Sbjct: 296 ASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQ 353
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 459 bits (1182), Expect = e-162
Identities = 102/358 (28%), Positives = 174/358 (48%), Gaps = 9/358 (2%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
++ + P + L PGP + V++AMN + + PA AL + ++ +++T +
Sbjct: 27 LEPLEVPSR-LLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENP 85
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
+ TGT A E+ + N + PGD ++ + G F +D R +V + WGE
Sbjct: 86 LTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV 145
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
L+ L + L H + +VH ET+TG L V +L L LVD V+S+
Sbjct: 146 FSLEELRTALE---THRPAILALVHAETSTGARQPLEGVGELCR--EFGTLLLVDTVTSL 200
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--FFDWKDYI 238
+ +D WG+D+A + SQK L G S +A+E + ++ + D
Sbjct: 201 GGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLG 260
Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298
K++ + +T I L Y LR AL LI +EGL N +RH++ + +E GL
Sbjct: 261 KYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHV 320
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
++E+ T+T V +P ++ + RR +N+ +G GL ++AGKV+R+G +G +
Sbjct: 321 -EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR 377
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 458 bits (1181), Expect = e-162
Identities = 103/352 (29%), Positives = 158/352 (44%), Gaps = 11/352 (3%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
L PGP + P +V+ AM+R + P + + E ++ +F+T + F +
Sbjct: 17 TPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLS 76
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
+G G E+ L N L GD I+ G + D R +V VV+S G+ LD +
Sbjct: 77 ASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEI 136
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
L H + + +++TGV L V L +H L +VD V+S+
Sbjct: 137 RDALL---IHKPSVLFLTQGDSSTGVLQGLEGVGALCH--QHNCLLIVDTVASLGGAPMF 191
Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW-----KDYIKFY 241
MD W ID TGSQK L P G+ V S +A+E K + + W DY +
Sbjct: 192 MDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCF 251
Query: 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
+ +T S LLYGLR A+ + EEGL +I RH K ++ G +
Sbjct: 252 GRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYA-DP 310
Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
+ TVT + VP ++ + + A + Y + + GL AG+VFRIG +G
Sbjct: 311 KDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQ 362
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 455 bits (1172), Expect = e-160
Identities = 91/369 (24%), Positives = 166/369 (44%), Gaps = 26/369 (7%)
Query: 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
+ PGPV + +V+R M+ PA + +E ++++F+T + +
Sbjct: 7 LCTPLRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYP 66
Query: 65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
I T E+ L + + P D ++ + G+F L + +R NV ++E +WG +
Sbjct: 67 IDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPE 126
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
+ ++ K + +VH ET+TG + L + + ALF+VD V++I +
Sbjct: 127 DIIREIK---KVKPKIVAMVHGETSTGRIHPLKAIGEACR--TEDALFIVDAVATIGGCE 181
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV---------------- 228
++DEW ID A+ G+QK LS+P+GM + + + + K V
Sbjct: 182 VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGN 241
Query: 229 ----RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKA 284
+FD +++ +T + +LY LR + L+ EEGLE ERHR A
Sbjct: 242 RPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301
Query: 285 TRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGK 344
++A GL+ + VT V +P I+ + ++ + + +AGK
Sbjct: 302 LAAGIKAMGLRLFG-DDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGK 360
Query: 345 VFRIGHLGH 353
++RIG +G+
Sbjct: 361 IWRIGTMGY 369
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 443 bits (1142), Expect = e-156
Identities = 104/353 (29%), Positives = 168/353 (47%), Gaps = 15/353 (4%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGT 70
L GP I + V+ A NN + S L+ ++ + + + P +IP GT
Sbjct: 5 LLHVGPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGT 64
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
A E ++T+ L P D+I+ G F W +R NV V+ G+ K + ++
Sbjct: 65 SAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEV 123
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
K + + H ET+TGV + V + ++ L +VDGVSS+ A + + +EW
Sbjct: 124 RK---SEYKLVALTHVETSTGVREPVKDVINKIR--KYVELIVVDGVSSVGAEEVKAEEW 178
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF----DWKDYIKFYNLGTF 246
+DV LT SQKAL G+G++ SPKAL + S+ ++ +W ++ G
Sbjct: 179 NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA 238
Query: 247 -WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
+ TP + ++ L A LI +EG+EN I+RH + A R +EA GL+ ++ E +S
Sbjct: 239 AYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYS 298
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
+TVT VI+ V + G++ A K FRIGH+G +
Sbjct: 299 NTVTGVILKVADPQK--VLAGTVNEGVEFAPGVHP-AFKYFRIGHMGWVTPND 348
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 433 bits (1117), Expect = e-153
Identities = 83/349 (23%), Positives = 154/349 (44%), Gaps = 17/349 (4%)
Query: 10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG 69
+ L PGPV + + + A+ R +R+ A + +++ F+T G ++ +G
Sbjct: 2 DWLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTE-GEVLILTGSG 60
Query: 70 TGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASK 129
T A E+ + N +PG+R++ + G+FS + + V+ ++ +G+ + + +A
Sbjct: 61 TLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVA-- 118
Query: 130 LAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE 189
+ +VH+ET+TG +L + + E L D V+S+ + ++
Sbjct: 119 -----KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEA 173
Query: 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249
G+D A +GSQK L P G+G V SP+ALE K + D +K G +
Sbjct: 174 MGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPR---GYYLDLARELKAQKEGES-AW 229
Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
TP+I L+ + A L+ + E + E GL+ + FS V
Sbjct: 230 TPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEEGGLRPV---PKRFSPAVA 285
Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
A +P + + V+ A+ + + G + GKVFR+ +G +
Sbjct: 286 AFYLPEGVPYAR-VKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYE 333
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 433 bits (1115), Expect = e-152
Identities = 94/366 (25%), Positives = 173/366 (47%), Gaps = 25/366 (6%)
Query: 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT---P 62
+ L +PGP+ + V +A++ + + SP ++ + +L++ + +FK+ + + P
Sbjct: 2 TKSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQP 61
Query: 63 FLIPTTGTGAWESALTNTL---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWG 118
F++ +GT W+ +N + +P ++ G FS + D + VDVV G
Sbjct: 62 FVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIG 121
Query: 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178
E L+++ KL+ ++ A+ + H +T+T V ++L + + + + F+VD V
Sbjct: 122 ESVPLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVC 178
Query: 179 SICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE----ASKTAKSVRVFFD- 233
SI +F DEWG+D ALT SQKA+ P G+ I S + ++ SK F
Sbjct: 179 SIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSL 238
Query: 234 --WKDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV- 289
W ++ Y G + TP +QL+ L AL I EEGL + HR + + ++
Sbjct: 239 RRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLV 298
Query: 290 EAWGLKNCTQK-EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFR 347
L + ++ + +TAV V + V + + + + G++K + K R
Sbjct: 299 NGLQLTSVSRYPSNMSAHGLTAVYVADPPD----VIAFLKSHGVVIAGGIHKDIGPKYIR 354
Query: 348 IGHLGH 353
IGH+G
Sbjct: 355 IGHMGV 360
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 425 bits (1096), Expect = e-150
Identities = 88/346 (25%), Positives = 152/346 (43%), Gaps = 14/346 (4%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTP-FLIPTTGT 70
L PGP IP++V +A+ R + P V + + + E + +F G + +G+
Sbjct: 3 LLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGS 62
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
E+ L N ++ + G FS + + +V++ GE + +A L
Sbjct: 63 LGMEAGLANL--DRGPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARAL 120
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
+ + +VH ET+TGV N + L E ALF +D V+++ + F M
Sbjct: 121 KR---RRYRMVALVHGETSTGVLNPAEAIGALAKE--AGALFFLDAVTTLGMLPFSMRAM 175
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
G+D A TGSQK LS P G+ + AS +A +A + + D + + G + +T
Sbjct: 176 GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRG--WYLDLARVAEHWERGGY-HHT 232
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
+ L Y L ALDL+ EEG+ R R + ++A G + + TV
Sbjct: 233 TPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYP--KASPLPTVLV 290
Query: 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
V P +++ + RA +++ G+ G+V R+G +G
Sbjct: 291 VRPPEGVDADR-LVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGAR 335
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 426 bits (1098), Expect = e-149
Identities = 74/360 (20%), Positives = 151/360 (41%), Gaps = 14/360 (3%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
+ +Y F GPV ++V +R+ + + + + K G
Sbjct: 12 HENLYFQ-GMLNFTVGPVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEG 70
Query: 61 -TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE 119
+ + TG+ E+ + N + D+++ G F ++ + ++ + G+
Sbjct: 71 SKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGK 130
Query: 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179
+ KL + + +ET+T V + + + + + F+ D VS+
Sbjct: 131 KLTKE----KLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKK--NNMFFVCDCVSA 184
Query: 180 ICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239
A F M+E G DV +TGSQK L+ P G+ ++ +P+ +E + +K ++FD KD +K
Sbjct: 185 FLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALK 244
Query: 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCT 298
G P+TP++ +L + L I + G + + R R ++ +
Sbjct: 245 NQERGQ-TPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELV- 302
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
E ++ VT+V P+ N+ +I + Y + + ++ +FR+GH+G L
Sbjct: 303 --SESPANGVTSV-HPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHED 359
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 376 bits (967), Expect = e-130
Identities = 69/356 (19%), Positives = 137/356 (38%), Gaps = 11/356 (3%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLI 65
L PGP+ V AM ++ + + + + + + + + G T L+
Sbjct: 2 SRNYLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLL 61
Query: 66 PTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDV 125
+G+ A E+ L + L P D+++ G + ++ + + +
Sbjct: 62 QGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQA 121
Query: 126 LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF 185
+ + L AD TI I +VH+ET TG+ N + +V L R+ ++VD +SS I
Sbjct: 122 IDAILNAD--PTISHIAMVHSETTTGMLNPIDEVGALAH--RYGKTYIVDAMSSFGGIPM 177
Query: 186 RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245
+ ID ++ + K + G V A + L A K + + +
Sbjct: 178 DIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHG 237
Query: 246 FWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304
W +T + AL + + G+ +R+++ ++ + A G +E
Sbjct: 238 KWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLL-DDELH 296
Query: 305 SDTVTAVIVPSHINSS--EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
S +TA P E RR ++ + +++ FRIG++G +
Sbjct: 297 SPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQ--SDCFRIGNIGEVYAAD 350
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 361 bits (929), Expect = e-124
Identities = 69/366 (18%), Positives = 131/366 (35%), Gaps = 30/366 (8%)
Query: 15 PGPVHIPDQVI----RAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
I + ++ S A + LL ++K ++ +IP +GT
Sbjct: 4 ALRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGT 61
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNF--NVDVVESDWGEGAKLDV--- 125
E A+ L+ + + G FS W ++ F + V+ ++ E +
Sbjct: 62 YGME-AVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFA 120
Query: 126 ---LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR-HPALFLVDGVSSIC 181
+ + +A + H ET++G+ + ++ L + L ++D ++S C
Sbjct: 121 PVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGC 180
Query: 182 AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241
+ M E GIDV ++ QK S G+V S A++ ++ +S D K ++
Sbjct: 181 -VWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIM 239
Query: 242 ----NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC 297
N G + T L R A+ E G + + + LG R + G+++
Sbjct: 240 RAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESV 299
Query: 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG-----KVFRIGHLG 352
E + + V A+ L + G+ G K FR+G G
Sbjct: 300 A-AEGFEAPGVVVSYTE---RDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFG 355
Query: 353 HLNEVM 358
Sbjct: 356 LDKLTD 361
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii
atcc 33406}
Length = 362
Score = 244 bits (626), Expect = 1e-78
Identities = 67/355 (18%), Positives = 135/355 (38%), Gaps = 26/355 (7%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY------RSPAVPALTKTLLEDIKKIFKTTSGTP 62
F PGP + V + M ++ RS + KT +++K + + S
Sbjct: 4 NKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYE 63
Query: 63 FLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122
L + T WE + N + + + G FS + + L E+ +G+G
Sbjct: 64 VLFLASATEIWERIIQNCVE--KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFY 121
Query: 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA 182
+ A+ IC+ HNET++GV+ + + D+ AL VD VSS+
Sbjct: 122 PADITVPADAE------IICLTHNETSSGVSMPVEDINTFRDKN-KDALIFVDAVSSLPY 174
Query: 183 IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK----TAKSVRVFFDWKDYI 238
D ID QK LP G+G+ + + +E SK KS+ + +
Sbjct: 175 PK--FDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSML 232
Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL-KNC 297
+ + P TP+ ++ L + + + + ++ +E+ +
Sbjct: 233 EKARVNQT-PETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFG 291
Query: 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
+ + ++T ++ + + EI + + +++++G G RI +
Sbjct: 292 VEDAK--LRSMTTIVANTTMLPGEI-NKILEPFDMAVGAGYGSKKETQIRIANFP 343
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 64.0 bits (156), Expect = 2e-11
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 17/186 (9%)
Query: 102 QQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161
L + D E +L + + H TG +++ +
Sbjct: 139 LADMLQQGYTLRLVDSPE---------ELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTA 189
Query: 162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALE 220
L AL + D S A+ + + G D A+ + K L+ P V SP+ +
Sbjct: 190 LSH--ECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCD 247
Query: 221 ASKTAK----SVRVFFDW-KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275
F Y + + T I L + LD+ + + ++
Sbjct: 248 LVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR 307
Query: 276 ERHRRL 281
+ L
Sbjct: 308 RKSLAL 313
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer,
structural genomics; HET: PLP; 1.50A {Mycobacterium
tuberculosis} PDB: 3vom_A*
Length = 398
Score = 63.0 bits (154), Expect = 3e-11
Identities = 56/307 (18%), Positives = 98/307 (31%), Gaps = 64/307 (20%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY-----RSPAVPALTKTLLEDIKKIFKTTSGTPF 63
++ F GP + + ++ + R V L + + ++F
Sbjct: 40 RDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFS------- 92
Query: 64 LIPTT---------GTGAWESALTNTLSPGDRIISFLIGQFSLLW---IDQQQRLNFNVD 111
+P T W++A + R + G+FS + + + +
Sbjct: 93 -LPDGYEVILGNGGATAFWDAAAFGLI--DKRSLHLTYGEFSAKFASAVSKNPFVG-EPI 148
Query: 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171
++ SD G + I HNET+TGV V E AL
Sbjct: 149 IITSDPGSAPEPQ--TDPSVDV-------IAWAHNETSTGV-----AVAVRRPEGSDDAL 194
Query: 172 FLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE-ASKTAKSVR- 229
++D S + + E QK + G+ + SP AL A + R
Sbjct: 195 VVIDATSGAGGLPVDIAETDAYYF--APQKNFASDGGLWLAIMSPAALSRIEAIAATGRW 252
Query: 230 --VFFDWKDYIKF------YNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRR 280
F ++ YN TP+I L L +D + G L+ ++R
Sbjct: 253 VPDFLSLPIAVENSLKNQTYN-------TPAIATLALLAEQIDWLVGNGGLDWAVKRTAD 305
Query: 281 LGKATRL 287
+ RL
Sbjct: 306 --SSQRL 310
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 53.9 bits (129), Expect = 4e-08
Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 12/224 (5%)
Query: 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHT--IKAICIVHN 146
+F +++ Q LN + EG + + L I I
Sbjct: 164 AFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGV 223
Query: 147 ETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL- 205
TG N+ + K D ++ ++ + +WG+D A S K L+
Sbjct: 224 HFYTGQHFNIPAITKAGQA--KGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAG 281
Query: 206 PTGMGIVCASPKALEASK----TAKSVRVFFDWKDYIKFY---NLGTFWPYTPSIQLLYG 258
G+ K K + +K K + F P I L+
Sbjct: 282 AGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCS 341
Query: 259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
L A+L++ + ++ + ++ L ++ K+ ++
Sbjct: 342 LHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKK 385
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 52.9 bits (128), Expect = 6e-08
Identities = 42/236 (17%), Positives = 67/236 (28%), Gaps = 47/236 (19%)
Query: 81 LSPGDRIISFLIGQFSLL--------WIDQQQRLNFNVDVVE-SDWGEGA-KLDVLASKL 130
GD I+ + R + VLA+ L
Sbjct: 98 WHQGDEIL------LTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL 151
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY--RHPALFLVDGVSSI--CAIDFR 186
T + + + H TG L+++ + + +P LVDG S +DF
Sbjct: 152 GPKT----RLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFS 207
Query: 187 MDEWGID-VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL-G 244
+D A TG K + P G+G + L + W+
Sbjct: 208 --RLEVDYYAFTG-HKWFAGPAGVGGLYIHGDCLGEINP-----TYVGWRSITYGAKGEP 259
Query: 245 TFW---PY-----TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292
T W T + GL AAL L +G + + + W
Sbjct: 260 TGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAIC-----QRSEFLW 310
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 2e-07
Identities = 70/404 (17%), Positives = 130/404 (32%), Gaps = 128/404 (31%)
Query: 31 NNEDY----RS------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG----AWESA 76
N +DY R V L K E + ++ +TT + G W
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ---GLNILEW--- 218
Query: 77 LTNTLSPGDRI------ISF-LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASK 129
L N + D+ IS LIG ++ Q ++ V + G L S
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIG---VI-----QLAHYVVTAKLLGFTPGE----LRSY 266
Query: 130 LAADTAHT---IKAICIVHNETATGVTNNLSKVRKLL--------DEYRHPAL------- 171
L T H+ + A+ I ++ ++ K +L + Y + +L
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 172 ------------FLVDGVSSICAIDFRMDEWGIDVALTGSQK-ALSL---PTGMGIVCAS 215
+ ++ + +++ + L ++ +SL + +V
Sbjct: 327 SLENNEGVPSPMLSISNLT-QEQVQDYVNK--TNSHLPAGKQVEISLVNGAKNL-VVSGP 382
Query: 216 PKALE----------ASKTAKSVRVFFDWKDYIKFYN--LGTFWPY-TPSIQLLYGLRAA 262
P++L A R+ F + +KF N L P+ + L A
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLPVASPFHSH-----L-LVPA 435
Query: 263 LDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD--TVTAVIVPSHINSS 320
DLI ++ ++N + + K ++ V T + SD ++ I ++
Sbjct: 436 SDLINKDLVKNNVSFN---AKDIQIPVY------DT--FDG-SDLRVLSGSISERIVD-- 481
Query: 321 EIVRRA--WQRYN-------LSLGLGLNKVAGKVFRIGHLGHLN 355
I+R W+ L G G +G L H N
Sbjct: 482 CIIRLPVKWETTTQFKATHILDFG------PGGASGLGVLTHRN 519
Score = 45.4 bits (107), Expect = 2e-05
Identities = 50/251 (19%), Positives = 75/251 (29%), Gaps = 83/251 (33%)
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQ----RLNFNVDVVESDWGEGAK----- 122
W A D G FS+L I ++F GE K
Sbjct: 1645 VWNRA--------DNHFKDTYG-FSILDIVINNPVNLTIHFG--------GEKGKRIREN 1687
Query: 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD--EYRHPALFLVDGVSSI 180
+ + D + I NE +T T + LL ++ PAL L+
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQFTQPALTLM----EK 1741
Query: 181 CAIDFR-MDEWGI---DVALTGSQKALSLPTGMG----IVCASPKALEASKTAKSV--RV 230
A F + G+ D G SL G + + + + V R
Sbjct: 1742 -AA-FEDLKSKGLIPADATFAG----HSL----GEYAALASLA-DVMSIESLVEVVFYR- 1789
Query: 231 FFDWKDYIKFYNLGTFW----PYTPSIQLLYGLRAALD-----LIF-EEGLENVIERHRR 280
G P + YG+ A++ F +E L+ V+E R
Sbjct: 1790 -------------GMTMQVAVPRDELGRSNYGM-IAINPGRVAASFSQEALQYVVE---R 1832
Query: 281 LGKATRLAVEA 291
+GK T VE
Sbjct: 1833 VGKRTGWLVEI 1843
Score = 32.3 bits (73), Expect = 0.28
Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 45/157 (28%)
Query: 38 PAVPALTKTLLEDIKKIFKTTSGTPF----LIPTTGTGAWE-SALT---NTLSPGDRI-I 88
PA+ + K ED+K + F L G E +AL + +S + +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSL----G----EYAALASLADVMSIESLVEV 1785
Query: 89 SFLIGQF--SLLWIDQQQRLNF-----NVDVVESDWGEGAKLDVLASKLAADTAHTIKAI 141
F G + D+ R N+ N V + + + A L + ++ T +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA-LQYVVERVGKRTG---WLV 1841
Query: 142 CIV-HN---------------ETATGVTNNLSKVRKL 162
IV +N +T T V N + K++K+
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTNVLNFI-KLQKI 1877
Score = 31.2 bits (70), Expect = 0.74
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 107 NFNVD---VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163
N+NV+ V + G+ LD + + L I I + +L +V L
Sbjct: 1845 NYNVENQQYVAA--GDLRALDTVTNVLNFIKLQKIDII-------ELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 3e-07
Identities = 70/454 (15%), Positives = 122/454 (26%), Gaps = 159/454 (35%)
Query: 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPF 63
MY ++ L+ V V R L + LLE G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNV----------SRLQPYLKLRQALLELRPAKNVLIDGVL- 159
Query: 64 LIPTTGTGAWESALT-NTLSPGDRIISFLIGQFSLLWID------------QQQRLNFNV 110
G+G ++ + + F + W++ Q+L + +
Sbjct: 160 -----GSG--KTWVALDVCLSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 111 D---VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167
D SD KL + H+I+A ++R+LL
Sbjct: 210 DPNWTSRSDHSSNIKLRI----------HSIQA-----------------ELRRLLKSKP 242
Query: 168 HP-ALFLVDGVSSI---------CAI----------DFRMDEWGIDVALTGSQKALSLPT 207
+ L ++ V + C I DF ++L L+
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 208 GMGI----VCASPKAL--EASKT--------AKSVRVFFD-WKDYIKFYNLGTFWPYTPS 252
+ + P+ L E T A+S+R W D K N T
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVN---CDKLTTI 358
Query: 253 IQL-LYGLRAAL------DL-IFEEGL---ENVIERHRRLGKATRLAVEAWG-------- 293
I+ L L A L +F ++ W
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-------------IWFDVIKSDVM 405
Query: 294 --LKNCTQK---EEWFSDTVTAV------IVPSHINSSEIVRRAWQRYNLSL-----GLG 337
+ + E+ ++ ++ + N + R YN+ L
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 338 LNKVAGKVFR-IGHLGHLN-----EVMFNFQLLF 365
+ + IGH HL E M F+++F
Sbjct: 466 PPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVF 497
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 38.5 bits (90), Expect = 0.002
Identities = 38/291 (13%), Positives = 91/291 (31%), Gaps = 46/291 (15%)
Query: 20 IPDQVIRAMNRNNEDYRS------PAVPALTKT-LLEDIKKIFKTTSGTPFLIPTTG-TG 71
+ ++ +A+ + Y + + + + I G T G
Sbjct: 21 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGARE 80
Query: 72 AWESALTNTLSPGDRII-------SFLIGQFSLLWIDQQQRLNFNVDVV-ESDWGEGA-K 122
A + + + ++ S + +R N+ +V ++D+ + A
Sbjct: 81 AKFAVMHSLAKKDAWVVMDENCHYSSYVA-----A----ERAGLNIALVPKTDYPDYAIT 131
Query: 123 LDVLASKLAADT-AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC 181
+ A + + I + + G ++ K+ K+ EY LV+G +I
Sbjct: 132 PENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYD--VPLLVNGAYAIG 189
Query: 182 AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD-YIKF 240
+ + E G D + K+++ +G++ + E +K+ ++
Sbjct: 190 RMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEK-----YKNKEVEL 244
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291
T + L A+ + E I+R + R
Sbjct: 245 LGC------TARGATIITLMASFPHVRER-----IKRWDEEVEKARRFAAE 284
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 36.8 bits (86), Expect = 0.009
Identities = 34/227 (14%), Positives = 63/227 (27%), Gaps = 52/227 (22%)
Query: 54 IFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--------WIDQQQR 105
+ + A ++ G +I S L W+ R
Sbjct: 90 VL--GADR-----AVLLSLLAEASSSRAGLGYEVI------VSRLDDEANIAPWLRAAHR 136
Query: 106 LNFNVDVVESDWGEGA-KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164
V E D G S ++ T + + + G +L + KL
Sbjct: 137 YGAKVKWAEVDIETGELPTWQWESLISKST----RLVAVNSASGTLGGVTDLRAMTKL-- 190
Query: 165 EYRHPALFLVDGVSSIC--AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS 222
+ AL +VD ++ +D R E DV + P +V P + +
Sbjct: 191 VHDVGALVVVDHSAAAPYRLLDIR--ETDADVVTVNAHAWGG-PPIGAMVFRDPSVMNSF 247
Query: 223 KTAKSVRVFFDWKDYIKFYNLGTFWPY-----TPSIQLLYGLRAALD 264
+ + + P LL G+ A+++
Sbjct: 248 GSVSTNP----YATG----------PARLEIGVHQFGLLAGVVASIE 280
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 33.2 bits (76), Expect = 0.12
Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 21/147 (14%)
Query: 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL----- 98
+ + IF T S GT A +AL L P D ++S + L
Sbjct: 78 SLDRVY--ANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIG 135
Query: 99 ---WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155
+ V D +G K+D+ K +IK I I + +TG
Sbjct: 136 MDDSKKVGSLREYGVKYKMVDLKDG-KVDINTVKEELKKDDSIKLIHI---QRSTGYGWR 191
Query: 156 -------LSKVRKLLDEYRHPALFLVD 175
++++ K + E + VD
Sbjct: 192 KSLRIAEIAEIIKSIREVNENVIVFVD 218
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 32.4 bits (74), Expect = 0.22
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 19/144 (13%)
Query: 46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL------W 99
TL +FKT + +GT A + L L P D ++ + L
Sbjct: 63 TLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIR 122
Query: 100 IDQQQRL-NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155
Q L +F++ E +D T T K I I + + G +
Sbjct: 123 KQGQGSLKDFHIGYSSVPLLENGDVDFPRIA-KKMTPKT-KMIGI---QRSRGYADRPSF 177
Query: 156 ----LSKVRKLLDEYRHPALFLVD 175
+ ++ + + VD
Sbjct: 178 TIEKIKEMIVFVKNINPEVIVFVD 201
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 32.0 bits (72), Expect = 0.28
Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 41/204 (20%)
Query: 106 LNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNE---TATGVTNNLSKVRK 161
+ N+ +VE+ G+ + V + A + V + ++++ ++ K
Sbjct: 196 VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAK 255
Query: 162 LLDEYRHPALFLVDGVSSIC----------AIDFRMDEWGIDVALTGSQKALSLPTGMGI 211
+ + Y P +++G +I A +R+D S K L P G G+
Sbjct: 256 ICENYDIP--HIINGAYAIQNNYYLEKLKKAFKYRVDAVVSS-----SDKNLLTPIGGGL 308
Query: 212 VCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL 271
V D + +P S + +L + +
Sbjct: 309 VY--------------------STDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNY 348
Query: 272 ENVIERHRRLGKATRLAVEAWGLK 295
+++ + K + K
Sbjct: 349 LELVKNQKNSKKLLDELLNDLSKK 372
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 30.9 bits (71), Expect = 0.65
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 144 VHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGID 193
+NE G + V +++ + L VD V +I I F +++ +D
Sbjct: 148 ANNEV--GTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVD 195
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 31.0 bits (71), Expect = 0.68
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA 182
L L + + DT + +I V+NE GV +++ + ++ ++ VD S+
Sbjct: 153 LKELEAAMRDDTI--LVSIMHVNNEI--GVVQDIAAIGEMCRA--RGIIYHVDATQSVGK 206
Query: 183 IDFRMDEWGID 193
+ + + +D
Sbjct: 207 LPIDLSQLKVD 217
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 30.6 bits (70), Expect = 0.78
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 15 PGPVHIPDQVIRAMNRNNEDYRSPA-VPALTKTLLEDIKKIFKTT--SGTPFLIPTTG-T 70
GP ++ +++ + + Y V AL + + + ++++ + + + T G T
Sbjct: 43 DGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV-TAGAT 101
Query: 71 GAWESALTNTLSPGDRIISF 90
A +A+T + GD +I F
Sbjct: 102 EALYAAITALVRNGDEVICF 121
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 30.5 bits (69), Expect = 0.84
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 30/152 (19%)
Query: 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF----------LIG 93
+ + ++F T S GT A +AL L PG+ ++S +IG
Sbjct: 77 SLDAVY--ARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIG 134
Query: 94 Q-FSLLWIDQQQRLNFNVDVVESDWGEGAKLDV--LASKLAADTAHTIKAICIVHNETAT 150
+ F ++ + D E K ++ + L D +VH + +T
Sbjct: 135 ITENSN---MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDE----SIT-LVHIQRST 186
Query: 151 GVTNN-------LSKVRKLLDEYRHPALFLVD 175
G + + + R + VD
Sbjct: 187 GYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 30.3 bits (69), Expect = 1.1
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 15 PGPVHIPDQVIRAMNRNNEDYRSPA-VPALTKTLLEDIKKIFKTT--SGTPFLIPTTG-T 70
GP + A+ Y L + + ++ F T L+ T G T
Sbjct: 38 DGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLV-TVGAT 96
Query: 71 GAWESALTNTLSPGDRIISF 90
A +A+ + PG ++
Sbjct: 97 EAIAAAVLGLVEPGSEVLLI 116
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 30.2 bits (69), Expect = 1.1
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 37 SPAVPALTKTLLEDIKKIFK--TTSGTPFLIPTTGTGAWESALTNTLSPG 84
S + A+ LL+++KK+ + +L + W S+L T S
Sbjct: 686 SYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAE 735
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome,
ribosomal R ribosomal protein, STM1; 3.00A
{Saccharomyces cerevisiae} PDB: 3izc_s 3izs_s 3j16_G*
3o5h_M 3jyw_8
Length = 312
Score = 29.7 bits (66), Expect = 1.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL 205
+K+R+ L+EY+ + VD VSS + R + G V L G +
Sbjct: 13 AKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRR 61
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 29.3 bits (66), Expect = 1.8
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 23/123 (18%)
Query: 69 GTGAWESALTNTLSPGDRIISFLIGQFSLL-------WIDQQQRLNFNVDVVESDWGEGA 121
GT A +AL L PGD ++ + L +N+ EG
Sbjct: 92 GTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGG 151
Query: 122 KLDV--LASKLAADTAHTIKAICIVHNETATGVTNN-------LSKVRKLLDEYRHPALF 172
+D +A+ + ++T K I I + + G + ++ + E + +
Sbjct: 152 LVDFEAVAAAIHSNT----KMIGI---QRSKGYATRPSFTISQIKEMIAFVKEIKPDVVV 204
Query: 173 LVD 175
VD
Sbjct: 205 FVD 207
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 29.2 bits (66), Expect = 2.2
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 15 PGPVHIPDQVIRAMNRNNED--YRSPA-VPALTKTLLEDIKKIFKTT--SGTPFLIPTTG 69
P P + A++ + Y P LTK L ++ L+ T G
Sbjct: 41 PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLV-TVG 99
Query: 70 -TGAWESALTNTLSPGDRIISF 90
GA +A + GD +I
Sbjct: 100 GYGALFTAFQALVDEGDEVIII 121
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 29.2 bits (66), Expect = 2.5
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 15 PGPVHIPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTT 68
P + + + A N + R P L + L + ++ T T L+
Sbjct: 50 HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVG 109
Query: 69 GTGAWESALTNTLSPGDRIISF 90
A + + + GD +I
Sbjct: 110 AYEALYATIQGHVDEGDEVIII 131
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.6
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 23 QVIRAMNRNNEDYRSP-AVPALT-KTLLE 49
Q ++ + + + Y + + PAL K +E
Sbjct: 20 QALKKLQASLKLY-ADDSAPALAIKATME 47
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 28.6 bits (64), Expect = 2.7
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR 286
+ + L++G+R +L + + + V+ H G +
Sbjct: 131 YERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVK 170
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural
genomics, national institute allergy and infectious
diseases; HET: FAD; 2.10A {Burkholderia thailandensis}
PDB: 4f7d_A*
Length = 271
Score = 28.2 bits (63), Expect = 4.2
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRL 287
+ L + R +L + + +++ + H LG R
Sbjct: 153 VVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIRE 187
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_S 3izc_S 3izs_S
Length = 178
Score = 27.8 bits (61), Expect = 5.6
Identities = 1/51 (1%), Positives = 6/51 (11%), Gaps = 4/51 (7%)
Query: 157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS----QKAL 203
+ + + V + +
Sbjct: 16 LPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEI 66
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 27.9 bits (63), Expect = 5.9
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 15 PGPVHIPDQVIRAMNRNNEDYRSPA-VPALTKTLLE----DIKKIFKTTSGTPFLIPTTG 69
P P + + V RA+ R ++ Y PA +PAL + L E + + + TSG
Sbjct: 38 PPPPFLLEAVRRALGRQDQ-YAPPAGLPALREALAEEFAVEPESVV-VTSG--------A 87
Query: 70 TGAWESALTNTLSPGDRIISF 90
T A L + + PGD ++
Sbjct: 88 TEALYVLLQSLVGPGDEVVVL 108
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 317
Score = 27.4 bits (60), Expect = 7.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
K+ +LLD+Y + D V S RM
Sbjct: 15 LKIIQLLDDYPKCFIVGADNVGSKQMQQIRMS 46
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 27.5 bits (62), Expect = 7.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 253 IQLLYGLRAALDLIFEE---GLENVIERHRRLGKATRLA---VEAWGL 294
+ L G RAA +++F + G N IER AT +A V G+
Sbjct: 331 LTALLGGRAAEEVVFGDVTSGAANDIER------ATEIARNMVCQLGM 372
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 27.6 bits (62), Expect = 8.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 253 IQLLYGLRAALDLIFEE---GLENVIERHRRLGKATRLA---VEAWGL 294
I + RAA +++F++ G EN + AT LA + WG+
Sbjct: 344 IAVALAGRAAEEIVFDDVTTGAENDFRQ------ATELARRMITEWGM 385
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 27.2 bits (61), Expect = 8.4
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
W ++ +G+ +L + + L+++ R L
Sbjct: 142 WTAPNETRIYFGVNTEPELFYIDELKSLERSMRNL 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,801,760
Number of extensions: 351822
Number of successful extensions: 854
Number of sequences better than 10.0: 1
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 59
Length of query: 367
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,049,298
Effective search space: 1101409056
Effective search space used: 1101409056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)