BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017727
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 97.4 bits (241), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
KGPW+ EED K+ + ++KYGT W + + + R GK CR RW N+L P +K ++E
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTK-QWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
EED II + +G+RW+ IA LPGRTDN +KN+WN+
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
KGPW+ EED ++ ++++KYG W + + + R GK CR RW N+L P +K ++E
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPK-RWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
EED II + +G+RW+ IA LPGRTDN +KN+WN+
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
KGPW+ EED ++ ++KYG W + + + R GK CR RW N+L P +K ++E
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
EED II + +G+RW+ IA LPGRTDN IKN+WN+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 93.6 bits (231), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
KGPW+ EED ++ ++KYG W + + + R GK CR RW N+L P +K ++E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
EED II + +G+RW+ IA LPGRTDN IKN+WN+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
KGPW+ EED ++ ++KYG W + + + R GK CR RW N+L P +K ++E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
EED II + +G+RW+ IA LPGRTDN IKN+WN+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
KGP++ ED +++Y+++ G NW + + R K CR RW N+L P + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQ-NWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTP 59
Query: 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
EED I Y+ +GS+WS+IA +PGRTDN IKN WN+
Sbjct: 60 EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIA--LPQKIGLKRCGKSCRLRWLNYLRPNIKHGG 70
KK ++PEED LK + ++G+ IA P R + CR RW NYL P+I H
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPN-----RNARQCRDRWKNYLAPSISHTP 64
Query: 71 FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
++ EED ++ G +W+IIA PGRTD IKN W T
Sbjct: 65 WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
K ++ EED KL+ + +YG +WI + Q + + R + CR RW NY+ P ++ +S
Sbjct: 1 KVKFTEEEDLKLQQLVMRYG-AKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSP 58
Query: 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYW 109
EED ++ Y G +W+ I+ L R+DN+I+N W
Sbjct: 59 EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKH 68
++ PWSPEED L +YG N I+ K R + R RW+ R KH
Sbjct: 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKIS---KFLKNRSDNNIRNRWMMIARHRAKH 104
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 66 IKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
+K ++EEED II + +G+RW+ IA LPGRTDN IKN+WN+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 66 IKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
+K ++EEED I+ + +G+RW+ IA LPGRTDN IKN+WN+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
KGPW+ EED +L ++KYG W + + + R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 69 GGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWN 110
G +++EED + L G RWS+IA L GR + W+
Sbjct: 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
KGPW+ EED ++ + ++KYG W + + + R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 69 GGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWN 110
G +++EED + L G RWS+IA L GR + W+
Sbjct: 4 GPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
KGPW+ EED ++ ++KYG W + + + R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 69 GGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWN 110
G +++EED + L G RWS+IA L GR + W+
Sbjct: 4 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 17 WSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFS 72
W ED LK + KYG W + + ++ K C+ RW +L P+IK +S
Sbjct: 12 WRNTEDEILKAAVMKYGKN-QWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
K W+ EED KLK +E+ GT +W + + R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
K W+ EED KLK +E+ GT +W + + R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNP 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,857,097
Number of Sequences: 62578
Number of extensions: 367144
Number of successful extensions: 791
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 32
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)