Query 017727
Match_columns 367
No_of_seqs 298 out of 1381
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 1.1E-36 2.3E-41 305.9 12.4 120 1-121 1-120 (459)
2 PLN03212 Transcription repress 100.0 2.4E-36 5.1E-41 285.4 11.0 118 3-121 14-131 (249)
3 KOG0048 Transcription factor, 100.0 2.1E-35 4.6E-40 277.7 11.4 111 10-121 5-115 (238)
4 KOG0049 Transcription factor, 99.8 2.1E-19 4.5E-24 187.2 6.9 112 1-114 347-459 (939)
5 KOG0049 Transcription factor, 99.7 9.2E-18 2E-22 175.1 7.9 113 7-120 246-413 (939)
6 PF13921 Myb_DNA-bind_6: Myb-l 99.6 3.5E-16 7.6E-21 117.3 3.4 60 17-79 1-60 (60)
7 COG5147 REB1 Myb superfamily p 99.5 4.5E-15 9.9E-20 153.6 5.6 109 8-118 14-122 (512)
8 KOG0050 mRNA splicing protein 99.5 1.5E-14 3.2E-19 148.4 2.6 107 11-120 4-110 (617)
9 KOG0051 RNA polymerase I termi 99.4 4.5E-13 9.8E-18 140.5 6.0 105 13-121 383-515 (607)
10 PF00249 Myb_DNA-binding: Myb- 99.4 8.3E-13 1.8E-17 95.6 5.5 46 68-113 1-48 (48)
11 PF00249 Myb_DNA-binding: Myb- 99.3 6.4E-13 1.4E-17 96.3 0.5 48 14-62 1-48 (48)
12 PF13921 Myb_DNA-bind_6: Myb-l 99.2 9.2E-12 2E-16 93.3 5.0 46 71-116 1-46 (60)
13 smart00717 SANT SANT SWI3, AD 99.2 3.2E-11 6.9E-16 84.0 6.1 47 68-114 1-48 (49)
14 PLN03212 Transcription repress 99.2 2.7E-11 5.9E-16 115.6 5.8 58 63-120 20-79 (249)
15 KOG0048 Transcription factor, 99.1 7.5E-11 1.6E-15 111.5 4.2 57 64-120 5-63 (238)
16 cd00167 SANT 'SWI3, ADA2, N-Co 99.1 3E-10 6.5E-15 78.1 6.1 44 70-113 1-45 (45)
17 PLN03091 hypothetical protein; 99.0 2.3E-10 5E-15 116.6 5.1 58 63-120 9-68 (459)
18 smart00717 SANT SANT SWI3, AD 98.9 3.9E-10 8.4E-15 78.5 2.2 48 14-63 1-48 (49)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 2.7E-09 5.9E-14 73.3 1.9 45 16-62 1-45 (45)
20 KOG0051 RNA polymerase I termi 98.7 2.8E-08 6.1E-13 104.9 6.0 102 13-116 307-431 (607)
21 COG5147 REB1 Myb superfamily p 98.3 7.2E-08 1.6E-12 100.6 -2.2 95 13-111 290-394 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.5 7.4E-05 1.6E-09 57.1 2.4 49 13-62 2-54 (57)
23 KOG0457 Histone acetyltransfer 97.4 0.00023 5.1E-09 73.1 6.3 50 65-114 69-119 (438)
24 KOG0050 mRNA splicing protein 97.4 0.00014 3E-09 76.1 4.2 55 66-120 5-60 (617)
25 TIGR02894 DNA_bind_RsfA transc 97.4 0.00025 5.3E-09 64.6 5.0 52 67-119 3-61 (161)
26 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00057 1.2E-08 52.2 6.1 46 68-113 3-54 (57)
27 PF13325 MCRS_N: N-terminal re 97.3 0.00057 1.2E-08 64.2 6.5 101 16-119 1-132 (199)
28 KOG0457 Histone acetyltransfer 97.3 0.0001 2.2E-09 75.7 1.7 90 11-102 69-180 (438)
29 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00074 1.6E-08 53.6 3.5 49 68-116 1-67 (90)
30 PF08914 Myb_DNA-bind_2: Rap1 96.8 0.002 4.2E-08 50.5 4.5 51 68-118 2-62 (65)
31 KOG1279 Chromatin remodeling f 96.6 0.0029 6.3E-08 66.7 5.4 46 67-112 252-297 (506)
32 COG5259 RSC8 RSC chromatin rem 96.6 0.0027 5.9E-08 66.1 4.9 45 68-112 279-323 (531)
33 PRK13923 putative spore coat p 96.4 0.0044 9.6E-08 57.0 4.7 51 66-117 3-60 (170)
34 COG5259 RSC8 RSC chromatin rem 96.3 0.0015 3.1E-08 68.0 1.3 46 13-61 278-323 (531)
35 KOG1279 Chromatin remodeling f 96.2 0.0035 7.5E-08 66.2 3.0 49 10-61 249-297 (506)
36 PF13873 Myb_DNA-bind_5: Myb/S 95.8 0.022 4.9E-07 44.5 5.6 48 68-115 2-71 (78)
37 PLN03142 Probable chromatin-re 95.4 0.039 8.4E-07 62.9 7.8 99 16-116 826-987 (1033)
38 PF08914 Myb_DNA-bind_2: Rap1 95.3 0.0048 1E-07 48.4 0.0 52 14-65 2-60 (65)
39 TIGR02894 DNA_bind_RsfA transc 95.2 0.0057 1.2E-07 55.8 0.1 51 12-64 2-57 (161)
40 PF13837 Myb_DNA-bind_4: Myb/S 94.9 0.0047 1E-07 49.0 -1.0 48 14-61 1-63 (90)
41 COG5114 Histone acetyltransfer 94.8 0.034 7.4E-07 56.0 4.4 48 67-114 62-110 (432)
42 COG5114 Histone acetyltransfer 93.4 0.023 5E-07 57.1 0.2 48 14-63 63-110 (432)
43 PF09111 SLIDE: SLIDE; InterP 93.2 0.17 3.7E-06 44.0 5.1 51 65-115 46-112 (118)
44 PRK13923 putative spore coat p 93.1 0.023 4.9E-07 52.4 -0.4 50 12-63 3-57 (170)
45 PF13873 Myb_DNA-bind_5: Myb/S 92.1 0.041 8.8E-07 43.1 -0.1 50 13-62 1-69 (78)
46 KOG1194 Predicted DNA-binding 92.0 0.45 9.7E-06 50.0 7.2 50 67-116 186-235 (534)
47 PF12776 Myb_DNA-bind_3: Myb/S 91.9 0.51 1.1E-05 37.8 6.0 47 70-116 1-65 (96)
48 KOG2656 DNA methyltransferase 91.0 0.15 3.3E-06 52.5 2.6 82 37-119 75-187 (445)
49 KOG4282 Transcription factor G 91.0 0.57 1.2E-05 46.6 6.5 51 68-118 54-118 (345)
50 COG5118 BDP1 Transcription ini 87.8 0.9 2E-05 47.0 5.3 47 69-115 366-412 (507)
51 PF08281 Sigma70_r4_2: Sigma-7 85.1 2.7 5.9E-05 30.3 5.3 41 73-114 12-52 (54)
52 KOG4167 Predicted DNA-binding 79.6 3.3 7.2E-05 46.0 5.6 47 68-114 619-665 (907)
53 PF11626 Rap1_C: TRF2-interact 74.7 3 6.4E-05 34.0 2.8 25 10-34 43-75 (87)
54 COG5118 BDP1 Transcription ini 74.3 1.6 3.5E-05 45.2 1.5 45 13-60 364-408 (507)
55 KOG4282 Transcription factor G 72.0 1.5 3.3E-05 43.6 0.7 49 14-62 54-113 (345)
56 PRK11179 DNA-binding transcrip 70.2 7.5 0.00016 34.3 4.6 46 73-119 8-54 (153)
57 PF04545 Sigma70_r4: Sigma-70, 68.7 14 0.00031 26.3 5.0 41 74-115 7-47 (50)
58 smart00595 MADF subfamily of S 66.5 8.3 0.00018 30.4 3.7 28 89-117 29-56 (89)
59 PRK11169 leucine-responsive tr 65.8 8.9 0.00019 34.3 4.2 47 73-120 13-60 (164)
60 PF11626 Rap1_C: TRF2-interact 64.2 9.7 0.00021 31.0 3.8 17 64-80 43-59 (87)
61 PF13404 HTH_AsnC-type: AsnC-t 64.1 19 0.00042 25.6 4.8 38 74-112 3-41 (42)
62 KOG4468 Polycomb-group transcr 62.5 12 0.00025 41.1 4.9 48 68-115 88-145 (782)
63 PF09111 SLIDE: SLIDE; InterP 60.7 5 0.00011 34.9 1.6 36 10-45 45-82 (118)
64 TIGR02985 Sig70_bacteroi1 RNA 58.6 25 0.00053 29.6 5.5 37 77-114 119-155 (161)
65 PF01388 ARID: ARID/BRIGHT DNA 57.0 29 0.00063 27.7 5.4 39 77-115 39-90 (92)
66 PF12776 Myb_DNA-bind_3: Myb/S 56.3 5.6 0.00012 31.7 1.1 45 16-60 1-60 (96)
67 KOG4329 DNA-binding protein [G 55.2 56 0.0012 34.1 8.1 45 69-113 278-323 (445)
68 PF11035 SnAPC_2_like: Small n 55.1 45 0.00099 34.1 7.3 49 68-117 21-73 (344)
69 KOG2656 DNA methyltransferase 53.2 9.3 0.0002 39.8 2.3 49 11-61 127-180 (445)
70 smart00344 HTH_ASNC helix_turn 50.9 32 0.00068 28.0 4.7 45 74-119 3-48 (108)
71 smart00501 BRIGHT BRIGHT, ARID 50.8 38 0.00083 27.4 5.2 38 78-115 36-86 (93)
72 PF10545 MADF_DNA_bdg: Alcohol 49.3 23 0.00049 27.0 3.4 29 89-117 28-57 (85)
73 PF07750 GcrA: GcrA cell cycle 46.8 27 0.00059 31.8 4.0 41 70-111 2-42 (162)
74 TIGR02937 sigma70-ECF RNA poly 46.6 46 0.00099 27.0 5.1 34 81-115 120-153 (158)
75 KOG2009 Transcription initiati 46.5 19 0.00042 39.2 3.4 46 66-111 407-452 (584)
76 cd08319 Death_RAIDD Death doma 46.0 32 0.0007 28.1 4.0 30 76-106 2-31 (83)
77 PF13325 MCRS_N: N-terminal re 44.6 45 0.00098 31.8 5.2 47 70-117 1-50 (199)
78 PF04504 DUF573: Protein of un 42.6 86 0.0019 26.3 6.1 48 69-116 5-65 (98)
79 PRK09652 RNA polymerase sigma 39.9 65 0.0014 27.6 5.2 31 82-113 139-169 (182)
80 cd06171 Sigma70_r4 Sigma70, re 38.5 1E+02 0.0022 20.5 5.1 36 75-111 14-49 (55)
81 cd08803 Death_ank3 Death domai 38.2 55 0.0012 26.8 4.2 31 76-107 4-34 (84)
82 PRK11924 RNA polymerase sigma 37.8 71 0.0015 27.3 5.1 28 85-113 139-166 (179)
83 cd08317 Death_ank Death domain 37.0 43 0.00093 26.8 3.4 31 76-107 4-34 (84)
84 KOG4468 Polycomb-group transcr 36.3 33 0.00071 37.9 3.3 48 14-63 88-144 (782)
85 PF13404 HTH_AsnC-type: AsnC-t 35.7 13 0.00028 26.5 0.1 38 20-60 3-40 (42)
86 COG1522 Lrp Transcriptional re 34.6 75 0.0016 27.2 4.7 48 73-121 7-55 (154)
87 KOG4167 Predicted DNA-binding 34.6 19 0.00041 40.5 1.2 44 14-60 619-662 (907)
88 PRK09643 RNA polymerase sigma 34.5 87 0.0019 28.1 5.3 29 84-113 147-175 (192)
89 PF07638 Sigma70_ECF: ECF sigm 33.8 90 0.002 28.2 5.3 37 76-113 140-176 (185)
90 cd08318 Death_NMPP84 Death dom 33.6 63 0.0014 26.2 3.8 27 79-106 10-36 (86)
91 PRK09641 RNA polymerase sigma 32.9 94 0.002 27.1 5.2 28 86-114 151-178 (187)
92 PRK04217 hypothetical protein; 32.2 1.1E+02 0.0024 26.4 5.3 44 69-114 41-84 (110)
93 PF09420 Nop16: Ribosome bioge 32.0 1E+02 0.0022 27.9 5.3 47 67-113 113-163 (164)
94 PRK11179 DNA-binding transcrip 31.2 19 0.00041 31.7 0.5 45 19-66 8-52 (153)
95 PRK09413 IS2 repressor TnpA; R 31.1 79 0.0017 26.9 4.3 45 13-62 9-53 (121)
96 smart00005 DEATH DEATH domain, 29.3 75 0.0016 24.8 3.5 31 75-106 4-35 (88)
97 TIGR02939 RpoE_Sigma70 RNA pol 29.0 94 0.002 27.2 4.5 28 86-114 153-180 (190)
98 cd08804 Death_ank2 Death domai 28.9 82 0.0018 25.6 3.7 31 76-107 4-34 (84)
99 TIGR02954 Sig70_famx3 RNA poly 28.6 1.2E+02 0.0027 26.2 5.2 29 86-115 134-162 (169)
100 PRK12523 RNA polymerase sigma 28.2 1.4E+02 0.003 26.1 5.4 36 79-115 127-162 (172)
101 PRK09047 RNA polymerase factor 28.0 1.5E+02 0.0033 25.2 5.5 29 85-114 120-148 (161)
102 PRK12512 RNA polymerase sigma 27.9 1.4E+02 0.003 26.3 5.4 30 85-115 145-174 (184)
103 TIGR02948 SigW_bacill RNA poly 27.8 1.2E+02 0.0026 26.5 4.9 28 86-114 151-178 (187)
104 KOG0384 Chromodomain-helicase 27.7 57 0.0012 38.8 3.5 74 13-94 1132-1206(1373)
105 PRK11169 leucine-responsive tr 27.6 18 0.00038 32.4 -0.4 45 19-66 13-57 (164)
106 PF02954 HTH_8: Bacterial regu 27.6 1.3E+02 0.0029 20.9 4.2 34 74-108 5-38 (42)
107 PF07750 GcrA: GcrA cell cycle 27.5 32 0.0007 31.4 1.3 34 16-52 2-36 (162)
108 PRK09637 RNA polymerase sigma 27.5 1.3E+02 0.0029 26.8 5.3 29 85-114 120-148 (181)
109 PRK09648 RNA polymerase sigma 27.4 1.4E+02 0.0031 26.4 5.4 29 85-114 153-181 (189)
110 PRK12532 RNA polymerase sigma 27.1 1.9E+02 0.0041 25.7 6.2 27 85-112 150-176 (195)
111 PRK12531 RNA polymerase sigma 27.0 1.5E+02 0.0032 26.6 5.4 28 86-114 156-183 (194)
112 PF11035 SnAPC_2_like: Small n 26.8 1.7E+02 0.0038 30.0 6.3 87 14-114 21-127 (344)
113 PRK09645 RNA polymerase sigma 26.6 1.5E+02 0.0033 25.7 5.4 29 85-114 132-160 (173)
114 KOG2009 Transcription initiati 26.5 49 0.0011 36.2 2.6 50 8-60 403-452 (584)
115 KOG3841 TEF-1 and related tran 26.4 2.1E+02 0.0044 30.3 6.9 28 7-34 69-96 (455)
116 TIGR02943 Sig70_famx1 RNA poly 26.3 1.6E+02 0.0034 26.5 5.5 34 80-114 140-173 (188)
117 PRK12515 RNA polymerase sigma 26.1 1.6E+02 0.0034 26.2 5.4 29 85-114 145-173 (189)
118 PRK12529 RNA polymerase sigma 25.8 1.9E+02 0.004 25.6 5.8 33 84-117 140-172 (178)
119 PRK11923 algU RNA polymerase s 25.2 1.4E+02 0.0031 26.4 5.1 28 86-114 153-180 (193)
120 PRK12530 RNA polymerase sigma 24.8 1.6E+02 0.0036 26.3 5.4 27 86-113 149-175 (189)
121 PF09197 Rap1-DNA-bind: Rap1, 24.8 1.1E+02 0.0025 26.3 4.1 47 70-116 1-78 (105)
122 PRK09642 RNA polymerase sigma 24.6 1.8E+02 0.004 24.8 5.4 29 85-114 120-148 (160)
123 cd08777 Death_RIP1 Death Domai 24.5 97 0.0021 25.3 3.5 30 77-107 3-32 (86)
124 PRK09651 RNA polymerase sigma 24.3 1.6E+02 0.0036 25.7 5.2 32 86-118 134-165 (172)
125 cd08805 Death_ank1 Death domai 24.3 1E+02 0.0023 25.2 3.6 26 76-102 4-29 (84)
126 PRK06759 RNA polymerase factor 23.5 2E+02 0.0043 24.3 5.4 28 86-114 121-148 (154)
127 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 22.8 1.9E+02 0.0041 21.7 4.4 35 74-109 7-41 (50)
128 TIGR02952 Sig70_famx2 RNA poly 22.5 2E+02 0.0044 24.6 5.3 28 86-114 137-164 (170)
129 PRK12524 RNA polymerase sigma 22.2 2E+02 0.0043 25.8 5.4 28 85-113 150-177 (196)
130 PRK12527 RNA polymerase sigma 22.1 2.3E+02 0.0049 24.3 5.5 28 86-114 120-147 (159)
131 PF07555 NAGidase: beta-N-acet 21.5 1.9E+02 0.0041 29.1 5.5 55 15-85 10-64 (306)
132 PRK12514 RNA polymerase sigma 21.4 2.1E+02 0.0046 25.0 5.3 28 86-114 144-171 (179)
133 cd08311 Death_p75NR Death doma 21.3 1.1E+02 0.0025 24.5 3.2 33 73-107 2-34 (77)
134 PRK12528 RNA polymerase sigma 21.3 2.3E+02 0.0051 24.2 5.5 30 84-114 126-155 (161)
135 COG2963 Transposase and inacti 21.2 2.9E+02 0.0064 22.8 5.8 41 68-109 5-46 (116)
136 PRK12536 RNA polymerase sigma 20.8 2.3E+02 0.0049 25.0 5.4 30 84-114 142-171 (181)
137 TIGR02999 Sig-70_X6 RNA polyme 20.7 2.4E+02 0.0051 24.6 5.4 28 86-114 149-176 (183)
138 PRK09649 RNA polymerase sigma 20.7 2.1E+02 0.0045 25.5 5.2 29 86-115 145-173 (185)
139 cd08779 Death_PIDD Death Domai 20.3 1.3E+02 0.0029 24.4 3.4 32 77-109 3-37 (86)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=305.89 Aligned_cols=120 Identities=62% Similarity=1.159 Sum_probs=116.6
Q ss_pred CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHH
Q 017727 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIIC 80 (367)
Q Consensus 1 mGR~pc~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll 80 (367)
|||++||+|..++||+||+|||++|+++|++||. .+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|+
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~-~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLL 79 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGH-GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCc-CCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999998 799999999977999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727 81 SLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR 121 (367)
Q Consensus 81 eLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr 121 (367)
+++++||++|++||++|||||+++||+||+.+++++++.+.
T Consensus 80 eL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~ 120 (459)
T PLN03091 80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120 (459)
T ss_pred HHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999987654
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=2.4e-36 Score=285.45 Aligned_cols=118 Identities=56% Similarity=1.175 Sum_probs=113.7
Q ss_pred CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHH
Q 017727 3 RAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSL 82 (367)
Q Consensus 3 R~pc~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleL 82 (367)
|+|||+|++++|++||+|||++|+++|++||. .+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|+++
T Consensus 14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~-~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel 92 (249)
T PLN03212 14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGE-GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL 92 (249)
T ss_pred CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCc-ccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHH
Confidence 78999999999999999999999999999998 69999999997799999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727 83 YISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR 121 (367)
Q Consensus 83 v~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr 121 (367)
+..||++|+.||++|||||+++||+||+.++++++++..
T Consensus 93 ~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 93 HRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred HHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence 999999999999999999999999999999999887644
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=100.00 E-value=2.1e-35 Score=277.67 Aligned_cols=111 Identities=56% Similarity=1.033 Sum_probs=106.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 017727 10 ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSR 89 (367)
Q Consensus 10 p~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~k 89 (367)
+.+.||+||+|||++|+++|++||. ++|..||+.+|++|++|+||+||.|||+|++++|.||+|||++|++|++.+|++
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~-~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr 83 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGK-HNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR 83 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCC-CCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence 4455899999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727 90 WSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR 121 (367)
Q Consensus 90 WskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr 121 (367)
|+.||++|||||++.|||+|++++|+|+.+..
T Consensus 84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999987654
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.78 E-value=2.1e-19 Score=187.24 Aligned_cols=112 Identities=24% Similarity=0.425 Sum_probs=103.6
Q ss_pred CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHH
Q 017727 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIIC 80 (367)
Q Consensus 1 mGR~pc~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll 80 (367)
|||......|++++|+||++||.+|+.+|.+||. ..|.+|-+.++ +|+..|||+||+|.|+...|.+.||-.||+.|+
T Consensus 347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~-kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~ 424 (939)
T KOG0049|consen 347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGA-KDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLL 424 (939)
T ss_pred hhhheeccCccccCCCCCCHHHHHHHHHHHHhCc-cchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHH
Confidence 6899999999999999999999999999999998 79999999999 999999999999999999999999999999999
Q ss_pred HHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 81 SLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 81 eLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.+|.+|| ++|.+||..||.||..|.+.|=...+.
T Consensus 425 ~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 425 YAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HHHHHHccchHHHHHHHccccchhHHHHHHHHHHH
Confidence 9999999 599999999999999666554444343
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.71 E-value=9.2e-18 Score=175.07 Aligned_cols=113 Identities=24% Similarity=0.451 Sum_probs=104.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccch------------------------------
Q 017727 7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRL------------------------------ 56 (367)
Q Consensus 7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~------------------------------ 56 (367)
...|.++|-.|++|||++|+.+...+|. .+|.+||..+|++|++.||..
T Consensus 246 ~l~P~~nk~~WS~EE~E~L~AiA~A~~~-~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~ 324 (939)
T KOG0049|consen 246 ELNPKWNKEHWSNEEVEKLKALAEAPKF-VSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITS 324 (939)
T ss_pred hcCCccchhccChHHHHHHHHHHhcccc-ccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhh
Confidence 3578999999999999999999999998 799999999998899999977
Q ss_pred ------------------------hhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHH
Q 017727 57 ------------------------RWLNYLRPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNT 111 (367)
Q Consensus 57 ------------------------RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~ 111 (367)
||...|+|.+++|+||.+||.+|+.+|.+||. .|.+|-..+|||++.|||.||.+
T Consensus 325 ~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n 404 (939)
T KOG0049|consen 325 INSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN 404 (939)
T ss_pred ccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence 77888999999999999999999999999996 59999999999999999999999
Q ss_pred HhhhHhhhh
Q 017727 112 RLKKKLLGR 120 (367)
Q Consensus 112 ~Lkkkl~~r 120 (367)
.|..+.+..
T Consensus 405 vL~~s~K~~ 413 (939)
T KOG0049|consen 405 VLNRSAKVE 413 (939)
T ss_pred HHHHhhccC
Confidence 998776543
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.61 E-value=3.5e-16 Score=117.27 Aligned_cols=60 Identities=42% Similarity=0.916 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHH
Q 017727 17 WSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNII 79 (367)
Q Consensus 17 WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~L 79 (367)
||+|||++|+.+|.+||. +|..||+.|+ .|++.+|+.||.++|+|.+++++||.+||.+|
T Consensus 1 WT~eEd~~L~~~~~~~g~--~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN--DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS---HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc--CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999997 8999999997 89999999999999999999999999999987
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.54 E-value=4.5e-15 Score=153.57 Aligned_cols=109 Identities=30% Similarity=0.503 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIG 87 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G 87 (367)
.+..++.|.|+..||+.|..+|++||+ .+|.+||..+. .|++++|+.||.++++|.++++.|+.|||+.|+.+..++|
T Consensus 14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~-nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~ 91 (512)
T COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGP-NNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELG 91 (512)
T ss_pred ccceecCCCCCCcchhHHHHHHhhccc-ccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcC
Confidence 346788999999999999999999999 68999999998 6999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727 88 SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118 (367)
Q Consensus 88 ~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~ 118 (367)
.+|+.||..+++||..+|.+||...+.....
T Consensus 92 ~~wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 92 TQWSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred chhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999998887665
No 8
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.5e-14 Score=148.43 Aligned_cols=107 Identities=29% Similarity=0.561 Sum_probs=101.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 017727 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRW 90 (367)
Q Consensus 11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kW 90 (367)
-++-|.|+.-||+.|..+|.+||. ..|..|++.+. ..+++||+.||..+|+|.|++..|+.|||++|+.+...+...|
T Consensus 4 ~~kggvwrntEdeilkaav~kyg~-nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qw 81 (617)
T KOG0050|consen 4 EIKGGVWRNTEDEVLKAAVMKYGK-NQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQW 81 (617)
T ss_pred EEecceecccHHHHHHHHHHHcch-HHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCcc
Confidence 367889999999999999999999 79999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhhHhhhh
Q 017727 91 SIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 91 skIAk~LPGRT~~qcKnRW~~~Lkkkl~~r 120 (367)
..|+..| |||++||-.||+.++-......
T Consensus 82 rtIa~i~-gr~~~qc~eRy~~ll~~~~s~~ 110 (617)
T KOG0050|consen 82 RTIADIM-GRTSQQCLERYNNLLDVYVSYH 110 (617)
T ss_pred chHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence 9999999 9999999999999998776543
No 9
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.37 E-value=4.5e-13 Score=140.46 Aligned_cols=105 Identities=25% Similarity=0.572 Sum_probs=94.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC--CCCCCCCHHHHHHHHHHHH------
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN--IKHGGFSEEEDNIICSLYI------ 84 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~--ikkg~WT~EED~~LleLv~------ 84 (367)
++|.||+||++.|..+|.++|. .|..|++.|+ |.+..||+||+++..+. .+++.||.||++.|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~--~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~ 458 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN--DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREA 458 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc--cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999998 9999999996 99999999999999987 5999999999999999995
Q ss_pred -Hh-------------------CCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727 85 -SI-------------------GSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR 121 (367)
Q Consensus 85 -~~-------------------G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr 121 (367)
++ +-+|+.|++.+..|+..|||.+|+.++.......+
T Consensus 459 ~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~ 515 (607)
T KOG0051|consen 459 LQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKR 515 (607)
T ss_pred hcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcc
Confidence 33 12699999999999999999999999987765443
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.37 E-value=8.3e-13 Score=95.64 Aligned_cols=46 Identities=30% Similarity=0.588 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-HHHHHhhCC-CCCHHHHHHHHHHHh
Q 017727 68 HGGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNTRL 113 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~k-WskIAk~LP-GRT~~qcKnRW~~~L 113 (367)
+++||+|||++|++++.+||.. |..||..|| +||..||++||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999998 999999999 999999999999874
No 11
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.28 E-value=6.4e-13 Score=96.25 Aligned_cols=48 Identities=42% Similarity=0.882 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL 62 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 62 (367)
|++||+|||++|+++|.+||. .+|..||..|+.+|++.||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-DNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-THHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-cHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998 469999999988999999999999875
No 12
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.24 E-value=9.2e-12 Score=93.29 Aligned_cols=46 Identities=33% Similarity=0.653 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 71 FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 71 WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
||+|||.+|+++|..||++|..||++|+.||..+|++||+..|+++
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~ 46 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPK 46 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCccc
Confidence 9999999999999999999999999996699999999999977644
No 13
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.21 E-value=3.2e-11 Score=83.99 Aligned_cols=47 Identities=40% Similarity=0.792 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 68 HGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
+++||++||.+|+.++..|| .+|..||..|++||+.+|++||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.17 E-value=2.7e-11 Score=115.65 Aligned_cols=58 Identities=22% Similarity=0.408 Sum_probs=53.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC-CCCCHHHHHHHHHHHhhhHhhhh
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQL-PGRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~L-PGRT~~qcKnRW~~~Lkkkl~~r 120 (367)
++.+++++||+|||++|+++|++|| .+|..||+.+ ++||+.|||.||.++|++.+.+.
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg 79 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 79 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC
Confidence 3578999999999999999999999 5899999998 69999999999999999988753
No 15
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.08 E-value=7.5e-11 Score=111.49 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHHHHHHHHhhhHhhhh
Q 017727 64 PNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLP-GRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 64 P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LP-GRT~~qcKnRW~~~Lkkkl~~r 120 (367)
+.+.+|+||+|||.+|+++|++||. +|..||+.++ +|++++||-||.++|++.|+++
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg 63 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRG 63 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCC
Confidence 4456899999999999999999995 6999999999 9999999999999999998753
No 16
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.08 E-value=3e-10 Score=78.07 Aligned_cols=44 Identities=34% Similarity=0.689 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727 70 GFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~L 113 (367)
+||.+||..|+.++..|| .+|..||+.|++||..+|++||..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999999999999999998753
No 17
>PLN03091 hypothetical protein; Provisional
Probab=99.02 E-value=2.3e-10 Score=116.61 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=52.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC-CCCCHHHHHHHHHHHhhhHhhhh
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQL-PGRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~L-PGRT~~qcKnRW~~~Lkkkl~~r 120 (367)
+..+++++||+|||++|+++|.+||. +|..||+.+ +|||+.|||.||.++|++.|+++
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKg 68 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCC
Confidence 36789999999999999999999995 799999998 59999999999999999887643
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.94 E-value=3.9e-10 Score=78.47 Aligned_cols=48 Identities=40% Similarity=0.888 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 63 (367)
+++||++||.+|+.++.+||. .+|..||..++ +|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~-~~w~~Ia~~~~-~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence 478999999999999999995 49999999999 9999999999998764
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.77 E-value=2.7e-09 Score=73.27 Aligned_cols=45 Identities=42% Similarity=0.904 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc
Q 017727 16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL 62 (367)
Q Consensus 16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 62 (367)
+||+|||..|+.++.+||. .+|..||..++ +|++.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~-~~w~~Ia~~~~-~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc-CCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence 5999999999999999995 59999999998 899999999998753
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.66 E-value=2.8e-08 Score=104.89 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=83.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--------------CC--------CceeecccccCccCccccchhhcccccCCC-CCC
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGT--------------GG--------NWIALPQKIGLKRCGKSCRLRWLNYLRPNI-KHG 69 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~--------------~~--------nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~i-kkg 69 (367)
+-+.|++|||+.|-..|..|-. .. -|..|...|+ -|+.+.+..+-++..+|-- ++|
T Consensus 307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~rg 385 (607)
T KOG0051|consen 307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKRG 385 (607)
T ss_pred hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCccccccC
Confidence 3488999999999999997711 01 2566777788 5999988774334444422 999
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+..
T Consensus 386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g 431 (607)
T KOG0051|consen 386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG 431 (607)
T ss_pred CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence 9999999999999999999999999999 999999999999887764
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.29 E-value=7.2e-08 Score=100.65 Aligned_cols=95 Identities=22% Similarity=0.567 Sum_probs=83.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccC--CCCCCCCCHHHHHHHHHHHHHhC---
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP--NIKHGGFSEEEDNIICSLYISIG--- 87 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P--~ikkg~WT~EED~~LleLv~~~G--- 87 (367)
.+|.||+||++.|..++..+|. .|..|...+ +|-+..||+||++|..+ .+++++|+.||+.+|...+...-
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~--~w~~ig~~~--~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~ 365 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG--SWTEIGKLL--GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEA 365 (512)
T ss_pred hhccCccccccccccccccccc--hhhHhhhhh--ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHH
Confidence 4789999999999999999997 999999887 49999999999999988 68899999999999998887432
Q ss_pred -----CCHHHHHhhCCCCCHHHHHHHHHH
Q 017727 88 -----SRWSIIAAQLPGRTDNDIKNYWNT 111 (367)
Q Consensus 88 -----~kWskIAk~LPGRT~~qcKnRW~~ 111 (367)
-.|..|+..+++|....|+..+.+
T Consensus 366 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 394 (512)
T COG5147 366 QQSSRILWLLIAQNIRNRLQHHCRDKYGV 394 (512)
T ss_pred hhhhhhhHHHHHHhhhccccCCCCCcccc
Confidence 269999999998888888765543
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.46 E-value=7.4e-05 Score=57.06 Aligned_cols=49 Identities=10% Similarity=0.280 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCc---eeecccccCcc-Cccccchhhcccc
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNW---IALPQKIGLKR-CGKSCRLRWLNYL 62 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW---~~IA~~lg~~R-s~kQCR~RW~n~L 62 (367)
++-.||+||..+++++|+.+|. ++| ..|++.|+..| +..||+.+...|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~-g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGG-PDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999997 799 99999987566 9999999987764
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.43 E-value=0.00023 Score=73.09 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 65 NIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 65 ~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.+-...||.+|+.+|++++..|| ++|..||.++..||..+|+.+|.++.-
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 45567899999999999999999 899999999999999999999987653
No 24
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.00014 Score=76.14 Aligned_cols=55 Identities=27% Similarity=0.479 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhh
Q 017727 66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 66 ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~r 120 (367)
++-|.|+.-||++|..+|.+||. .|++|++.++-.|+.||++||...+.+.|++-
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~t 60 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKT 60 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhh
Confidence 57789999999999999999995 79999999999999999999999999988754
No 25
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.37 E-value=0.00025 Score=64.58 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 67 KHGGFSEEEDNIICSLYISI---GS----RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~---G~----kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
+...||.|||.+|-+.|-+| |+ -+..+++.| +||+.+|.-|||..+|++...
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence 56789999999999999887 43 499999999 999999999999999988753
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.35 E-value=0.00057 Score=52.20 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CH---HHHHhhCC-CC-CHHHHHHHHHHHh
Q 017727 68 HGGFSEEEDNIICSLYISIGS-RW---SIIAAQLP-GR-TDNDIKNYWNTRL 113 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~-kW---skIAk~LP-GR-T~~qcKnRW~~~L 113 (367)
+-.||+||..+.++++..+|. +| ..|++.|. .| |..||+.+...+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 557999999999999999997 99 99999884 45 9999999987654
No 27
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.28 E-value=0.00057 Score=64.24 Aligned_cols=101 Identities=23% Similarity=0.401 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceeeccccc--CccCccccchhhcccc-cCCC--------------------CCCCCC
Q 017727 16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIG--LKRCGKSCRLRWLNYL-RPNI--------------------KHGGFS 72 (367)
Q Consensus 16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg--~~Rs~kQCR~RW~n~L-~P~i--------------------kkg~WT 72 (367)
+|++++|-.|+.+|.. |. +-..|+..+. ..-|-..+.+||+..| +|.+ .+-+||
T Consensus 1 rW~~~DDl~Li~av~~-~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS 77 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFS 77 (199)
T ss_pred CCCchhhHHHHHHHHH-hc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCC
Confidence 6999999999999987 33 5666655443 2345677888998765 4433 356899
Q ss_pred HHHHHHHHHHHHHhCC---CHHHHHh----hC-CCCCHHHHHHHHHHHhhhHhhh
Q 017727 73 EEEDNIICSLYISIGS---RWSIIAA----QL-PGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 73 ~EED~~LleLv~~~G~---kWskIAk----~L-PGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
.+|+++|......... .+.+|=. .| ++||+.++.++|..+.+..+..
T Consensus 78 ~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 78 KEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred HHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 9999999997766543 5777643 23 7899999999999887777763
No 28
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.28 E-value=0.0001 Score=75.66 Aligned_cols=90 Identities=23% Similarity=0.434 Sum_probs=64.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc-cCCCCCCCCC-------HHHHHHHHHH
Q 017727 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL-RPNIKHGGFS-------EEEDNIICSL 82 (367)
Q Consensus 11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L-~P~ikkg~WT-------~EED~~LleL 82 (367)
.+-...||.+|+-+|++++..||. |||..||.++| .|+...|+++|.+++ +..+-.-+|. ..||...-.-
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~-GNW~dIA~hIG-tKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~ 146 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGF-GNWQDIADHIG-TKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKN 146 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCC-CcHHHHHHHHc-ccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhccc
Confidence 345678999999999999999999 89999999999 999999999999865 3333222322 2233333222
Q ss_pred -HHHhCC-------------CHHHHHhhCCCCCH
Q 017727 83 -YISIGS-------------RWSIIAAQLPGRTD 102 (367)
Q Consensus 83 -v~~~G~-------------kWskIAk~LPGRT~ 102 (367)
+..++. .=.+|+.+||+|.+
T Consensus 147 ~~~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~d 180 (438)
T KOG0457|consen 147 RAEPFQPTDLVPRKPGVSNPLRREISGYMPGRLD 180 (438)
T ss_pred ccccCCCCCCCCCCCCCCCchHHHHhhhCccchh
Confidence 222221 24688999999864
No 29
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.98 E-value=0.00074 Score=53.62 Aligned_cols=49 Identities=27% Similarity=0.506 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--C------CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 017727 68 HGGFSEEEDNIICSLYIS------IG--S------RWSIIAAQL----PGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~------~G--~------kWskIAk~L----PGRT~~qcKnRW~~~Lkkk 116 (367)
+..||.+|...||+++.. ++ + -|..||..| ..||+.||+++|+++.+.-
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 357999999999999877 22 1 399999987 4699999999999966553
No 30
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.80 E-value=0.002 Score=50.54 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------C-CHHHHHhhCC-CCCHHHHHHHHHHHhhhHhh
Q 017727 68 HGGFSEEEDNIICSLYISIG--------S-RWSIIAAQLP-GRTDNDIKNYWNTRLKKKLL 118 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G--------~-kWskIAk~LP-GRT~~qcKnRW~~~Lkkkl~ 118 (367)
+.+||.|||.+|+..|+.+. + =|.++++.-| .+|-...|+||...|+.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~ 62 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR 62 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence 46899999999999997642 1 2999999887 99999999999988877643
No 31
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.59 E-value=0.0029 Score=66.72 Aligned_cols=46 Identities=11% Similarity=0.217 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTR 112 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~ 112 (367)
.++.||++|..+|++++..||..|.+||.++.+||..||--++..+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999988654
No 32
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.56 E-value=0.0027 Score=66.07 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727 68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTR 112 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~ 112 (367)
...||.+|..+|++.+..||..|.+||+++..||..||--||-++
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 358999999999999999999999999999999999999999754
No 33
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.39 E-value=0.0044 Score=57.03 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-------CHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 66 IKHGGFSEEEDNIICSLYISIGS-------RWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 66 ikkg~WT~EED~~LleLv~~~G~-------kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
.+...||.|||.+|-+.|..|+. -...++..| +||..+|..||+..++++.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence 35679999999999999988874 277888888 9999999999999999764
No 34
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.33 E-value=0.0015 Score=68.04 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY 61 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~ 61 (367)
....||.+|..+|++.|+.||. +|.+||.++| +|+..||..|+.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD--dW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD--DWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh--hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 5668999999999999999997 9999999999 99999999999774
No 35
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.15 E-value=0.0035 Score=66.19 Aligned_cols=49 Identities=24% Similarity=0.639 Sum_probs=44.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727 10 ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY 61 (367)
Q Consensus 10 p~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~ 61 (367)
....++.||.+|+.+|+++|++||. +|.+||.+++ .|+..||-.++.+.
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~d--dW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGD--DWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhcc--cHHHHHhccC-CCCHHHHHHHHHhc
Confidence 3456788999999999999999998 9999999999 99999999998764
No 36
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.82 E-value=0.022 Score=44.55 Aligned_cols=48 Identities=31% Similarity=0.471 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-----------------CHHHHHhhC-----CCCCHHHHHHHHHHHhhh
Q 017727 68 HGGFSEEEDNIICSLYISIGS-----------------RWSIIAAQL-----PGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~-----------------kWskIAk~L-----PGRT~~qcKnRW~~~Lkk 115 (367)
...||.+|.++|++++.+|.. -|..|+..| +.||..+||.+|.++...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999988631 399999877 369999999999987654
No 37
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.45 E-value=0.039 Score=62.91 Aligned_cols=99 Identities=19% Similarity=0.381 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccch-------h-------------------------------
Q 017727 16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRL-------R------------------------------- 57 (367)
Q Consensus 16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~-------R------------------------------- 57 (367)
.|+.-+=..++.+..+||. .+...||..|. +++...++. |
T Consensus 826 ~w~~~~f~~f~~~~~~~gr-~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~ 903 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGR-NDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI 903 (1033)
T ss_pred cccHHHHHHHHHHHHHhCH-hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888889999999997 68999999997 677655543 1
Q ss_pred ----------hccc-c-cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhh------------CCCCCHHHHHHHHHHH
Q 017727 58 ----------WLNY-L-RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQ------------LPGRTDNDIKNYWNTR 112 (367)
Q Consensus 58 ----------W~n~-L-~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~------------LPGRT~~qcKnRW~~~ 112 (367)
|... + -+..++..||+|||+.|+-.+.+|| .+|.+|-.. |..||+..|..|..++
T Consensus 904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 1110 1 1233455699999999999999999 689999542 3579999999999988
Q ss_pred hhhH
Q 017727 113 LKKK 116 (367)
Q Consensus 113 Lkkk 116 (367)
++--
T Consensus 984 ~~~~ 987 (1033)
T PLN03142 984 IRLI 987 (1033)
T ss_pred HHHH
Confidence 8643
No 38
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.29 E-value=0.0048 Score=48.38 Aligned_cols=52 Identities=31% Similarity=0.496 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-----C--CCceeecccccCccCccccchhhcccccCC
Q 017727 14 KGPWSPEEDAKLKDYIEKYGT-----G--GNWIALPQKIGLKRCGKSCRLRWLNYLRPN 65 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~-----~--~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ 65 (367)
+.++|.|||+.|+++|..+.. . .=|..+++.-++.++-.+-|+||.+.|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 457999999999999976632 1 238888888766788888999999988764
No 39
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.17 E-value=0.0057 Score=55.85 Aligned_cols=51 Identities=24% Similarity=0.568 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC-----CceeecccccCccCccccchhhcccccC
Q 017727 12 VKKGPWSPEEDAKLKDYIEKYGTGG-----NWIALPQKIGLKRCGKSCRLRWLNYLRP 64 (367)
Q Consensus 12 lKKG~WT~EEDekL~~lV~kyG~~~-----nW~~IA~~lg~~Rs~kQCR~RW~n~L~P 64 (367)
.+.-.||.|||.+|.+.|-+|=..| .+..|++.| +||+..|.-||+.+++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--~RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--NRTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--cccHHHhcchHHHHHHH
Confidence 3567899999999999999993212 477888888 59999999999998874
No 40
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.93 E-value=0.0047 Score=48.99 Aligned_cols=48 Identities=23% Similarity=0.641 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHH------hC---C-CC--Cceeecccc---cCccCccccchhhccc
Q 017727 14 KGPWSPEEDAKLKDYIEK------YG---T-GG--NWIALPQKI---GLKRCGKSCRLRWLNY 61 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~k------yG---~-~~--nW~~IA~~l---g~~Rs~kQCR~RW~n~ 61 (367)
+-.||.+|...|+.++.. ++ . .. -|..||..| |..|++.||+.||.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 357999999999999887 21 1 11 499999987 4679999999999874
No 41
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.80 E-value=0.034 Score=55.95 Aligned_cols=48 Identities=19% Similarity=0.404 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 67 KHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
--..|+..|+.+|++...-.| ++|..||.++..|+...||.+|..+.-
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 345799999999999999999 799999999999999999999987654
No 42
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=93.42 E-value=0.023 Score=57.13 Aligned_cols=48 Identities=23% Similarity=0.574 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 63 (367)
---|+..|+.+|++.....|- +||..||..+| .|....|+++|.+++.
T Consensus 63 ~e~WgadEEllli~~~~TlGl-GNW~dIadyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGL-GNWEDIADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCC-CcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence 346999999999999999999 89999999999 9999999999998765
No 43
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=93.17 E-value=0.17 Score=44.02 Aligned_cols=51 Identities=29% Similarity=0.472 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhC------------CCCCHHHHHHHHHHHhhh
Q 017727 65 NIKHGGFSEEEDNIICSLYISIGS----RWSIIAAQL------------PGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 65 ~ikkg~WT~EED~~LleLv~~~G~----kWskIAk~L------------PGRT~~qcKnRW~~~Lkk 115 (367)
..++..||++||..|+-++.+||- .|..|-..+ ..||+..|..|..++++-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 556789999999999999999996 799887643 469999999999998864
No 44
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=93.13 E-value=0.023 Score=52.43 Aligned_cols=50 Identities=22% Similarity=0.545 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC-----CceeecccccCccCccccchhhccccc
Q 017727 12 VKKGPWSPEEDAKLKDYIEKYGTGG-----NWIALPQKIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 12 lKKG~WT~EEDekL~~lV~kyG~~~-----nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 63 (367)
.+...||.|||.+|.+.|-.|+..+ -...++..| +|++..|..||..+++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr 57 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR 57 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence 4678899999999999999997633 244555555 6999999999977665
No 45
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=92.14 E-value=0.041 Score=43.08 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHh-----CC----------CCCceeeccccc----CccCccccchhhcccc
Q 017727 13 KKGPWSPEEDAKLKDYIEKY-----GT----------GGNWIALPQKIG----LKRCGKSCRLRWLNYL 62 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~ky-----G~----------~~nW~~IA~~lg----~~Rs~kQCR~RW~n~L 62 (367)
++..||++|.+.|+++|.+| |. ..-|..|+..+. ..|+..+|+.+|.+..
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999988 31 125999998772 3699999999998754
No 46
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=92.02 E-value=0.45 Score=50.00 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
-...||.||-.++-+++..||..+.+|-+.||.|+-..+..+|+...+.+
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~ 235 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR 235 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999998776654
No 47
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=91.85 E-value=0.51 Score=37.83 Aligned_cols=47 Identities=30% Similarity=0.547 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHh---CC----------CHHHHHhhC---CC--CCHHHHHHHHHHHhhhH
Q 017727 70 GFSEEEDNIICSLYISI---GS----------RWSIIAAQL---PG--RTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~---G~----------kWskIAk~L---PG--RT~~qcKnRW~~~Lkkk 116 (367)
.||+++++.|++++.+. |+ .|..|++.| +| .|..||++||..+.+.-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y 65 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY 65 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 49999999999998553 22 399999887 33 57899999998766543
No 48
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=91.03 E-value=0.15 Score=52.46 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=62.4
Q ss_pred CceeecccccCccCccccchhhcccccCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCCHH
Q 017727 37 NWIALPQKIGLKRCGKSCRLRWLNYLRPN-------------------------IKHGGFSEEEDNIICSLYISIGSRWS 91 (367)
Q Consensus 37 nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~-------------------------ikkg~WT~EED~~LleLv~~~G~kWs 91 (367)
.|.-++=... .|...-...||....++. +....||.+|-.-|..|++.|.-+|.
T Consensus 75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 5776664444 666666666776652221 12356999999999999999999999
Q ss_pred HHHhh-----CCC-CCHHHHHHHHHHHhhhHhhh
Q 017727 92 IIAAQ-----LPG-RTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 92 kIAk~-----LPG-RT~~qcKnRW~~~Lkkkl~~ 119 (367)
.||.. ++. ||-.++|.||+...++-++.
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA 187 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA 187 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence 99976 666 99999999999988876654
No 49
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=90.96 E-value=0.57 Score=46.60 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHh----------CCCHHHHHhhC----CCCCHHHHHHHHHHHhhhHhh
Q 017727 68 HGGFSEEEDNIICSLYISI----------GSRWSIIAAQL----PGRTDNDIKNYWNTRLKKKLL 118 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~----------G~kWskIAk~L----PGRT~~qcKnRW~~~Lkkkl~ 118 (367)
...|+.+|-..||++.... +.-|..||+.+ .-||+.+||++|.++.++-.+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999997653 23499999965 349999999999998776443
No 50
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=87.78 E-value=0.9 Score=46.97 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 69 GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 69 g~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.+||.+|-++..++...+|..++.|+..+|.|...|||-+|.+--|+
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 47999999999999999999999999999999999999999765443
No 51
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=85.08 E-value=2.7 Score=30.34 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 73 EEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 73 ~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
++++..++.++...|-.|.+||..+ |.|...|+.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4677888889999999999999999 9999999998766554
No 52
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=79.60 E-value=3.3 Score=46.02 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
...||+.|-.+.-+++..|.+.+-.|++.++++|..+|-.+|++..|
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK 665 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKK 665 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999998876544
No 53
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=74.74 E-value=3 Score=33.99 Aligned_cols=25 Identities=36% Similarity=0.704 Sum_probs=14.4
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHhCC
Q 017727 10 ANVKKGPWSPEEDAKL--------KDYIEKYGT 34 (367)
Q Consensus 10 p~lKKG~WT~EEDekL--------~~lV~kyG~ 34 (367)
|.-..|-||+|+|+.| ..++++||.
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG~ 75 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHGE 75 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH-H
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhCH
Confidence 3445788999999999 456677774
No 54
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=74.33 E-value=1.6 Score=45.19 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcc
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n 60 (367)
.--+||.+|-+++.++....|+ ++..|+..++ .|..+|+..+|.+
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGt--dF~LIs~lfP-~R~RkqIKaKfi~ 408 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGT--DFSLISSLFP-NRERKQIKAKFIK 408 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcc--hHHHHHHhcC-chhHHHHHHHHHH
Confidence 3457999999999999999998 8999999999 9999999998866
No 55
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=72.00 E-value=1.5 Score=43.57 Aligned_cols=49 Identities=27% Similarity=0.473 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHh----CC----CCCceeecccc---cCccCccccchhhcccc
Q 017727 14 KGPWSPEEDAKLKDYIEKY----GT----GGNWIALPQKI---GLKRCGKSCRLRWLNYL 62 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~ky----G~----~~nW~~IA~~l---g~~Rs~kQCR~RW~n~L 62 (367)
...|+.+|-..|+.+..+. .. ..-|..||..+ |..|++.+|+.+|.+..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3689999999999987643 11 12599999854 46799999999998743
No 56
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=70.23 E-value=7.5 Score=34.30 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 73 EEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 73 ~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
.+-|.+|+.+..+-|. .|++||+.+ |-|...|+.|++.+....+.+
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 3578899988888885 799999999 999999999999988877664
No 57
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=68.66 E-value=14 Score=26.31 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 74 EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+++..++.+.-..|-.+.+||..| |-|...|+.+-...+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 456666666666667899999999 99999999888776654
No 58
>smart00595 MADF subfamily of SANT domain.
Probab=66.52 E-value=8.3 Score=30.45 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.1
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 89 RWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 89 kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
-|..||..| |-|..+|+.+|+++-..-.
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~LR~~y~ 56 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNLRDRYR 56 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 499999999 5599999999998765443
No 59
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=65.75 E-value=8.9 Score=34.29 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhh
Q 017727 73 EEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 73 ~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~r 120 (367)
.+-|.+|+.+..+-|. .|++||+.+ |-|...|+.|++.+.+..+.++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEE
Confidence 5678888888888875 899999999 9999999999999888877643
No 60
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=64.22 E-value=9.7 Score=30.96 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=10.2
Q ss_pred CCCCCCCCCHHHHHHHH
Q 017727 64 PNIKHGGFSEEEDNIIC 80 (367)
Q Consensus 64 P~ikkg~WT~EED~~Ll 80 (367)
|.-..|-||+|+|+.|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55678999999999994
No 61
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=64.09 E-value=19 Score=25.62 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHH
Q 017727 74 EEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTR 112 (367)
Q Consensus 74 EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~ 112 (367)
+=|..|+.+...-|. .|.+||+.+ |=|...|..|+..+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 457888888888885 799999999 99999999998754
No 62
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=62.50 E-value=12 Score=41.14 Aligned_cols=48 Identities=8% Similarity=0.402 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHh----------hCCCCCHHHHHHHHHHHhhh
Q 017727 68 HGGFSEEEDNIICSLYISIGSRWSIIAA----------QLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~kWskIAk----------~LPGRT~~qcKnRW~~~Lkk 115 (367)
+..||-.|+.-...+++++|..+.+|-+ ...-+|..|+|.+|+..+++
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~ 145 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRR 145 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHH
Confidence 6789999999999999999999999832 23346888999988876653
No 63
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=60.72 E-value=5 Score=34.93 Aligned_cols=36 Identities=44% Similarity=0.596 Sum_probs=28.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCCceeecccc
Q 017727 10 ANVKKGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKI 45 (367)
Q Consensus 10 p~lKKG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~l 45 (367)
|+-++..||.|||.-|+-.+.+||- .+.|..|-..+
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI 82 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 3667889999999999999999997 35899887765
No 64
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=58.65 E-value=25 Score=29.57 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 77 NIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 77 ~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..++.+.-..|-.+.+||+.+ |.|...|+.+....++
T Consensus 119 r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~ 155 (161)
T TIGR02985 119 RKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALK 155 (161)
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 334444344577899999999 9999999999887544
No 65
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=57.05 E-value=29 Score=27.72 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCC--------CHHHHHhhCCC---CC--HHHHHHHHHHHhhh
Q 017727 77 NIICSLYISIGS--------RWSIIAAQLPG---RT--DNDIKNYWNTRLKK 115 (367)
Q Consensus 77 ~~LleLv~~~G~--------kWskIAk~LPG---RT--~~qcKnRW~~~Lkk 115 (367)
-.|..+|.+.|+ +|..||+.|.- -+ ..++|..|..+|..
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 39 YKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 357778888885 69999999822 22 36899999887753
No 66
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=56.34 E-value=5.6 Score=31.71 Aligned_cols=45 Identities=24% Similarity=0.575 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---C-----Cceeeccccc----CccCccccchhhcc
Q 017727 16 PWSPEEDAKLKDYIEKY---GTG---G-----NWIALPQKIG----LKRCGKSCRLRWLN 60 (367)
Q Consensus 16 ~WT~EEDekL~~lV~ky---G~~---~-----nW~~IA~~lg----~~Rs~kQCR~RW~n 60 (367)
.||+++++.|++++... |.. + .|..|+..|. ...+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999988654 321 1 3777777664 33455667777644
No 67
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=55.22 E-value=56 Score=34.15 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHHHh
Q 017727 69 GGFSEEEDNIICSLYISIGSRWSIIAA-QLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 69 g~WT~EED~~LleLv~~~G~kWskIAk-~LPGRT~~qcKnRW~~~L 113 (367)
..|+++|-+..-+.++.||+.+..|-+ .++.|+--.|-.+|+...
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWK 323 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWK 323 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhh
Confidence 479999999999999999999999965 689999999999886543
No 68
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=55.11 E-value=45 Score=34.07 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHh-CC---CHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 68 HGGFSEEEDNIICSLYISI-GS---RWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~-G~---kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
-..||.-|.+.|+.+.... |. .-.+|++.++||+..+|++.- ..||.++
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl-~~LK~rv 73 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFL-QQLKGRV 73 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHH-HHHHHHH
Confidence 4579999999998887655 54 357899999999999999854 4455444
No 69
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=53.16 E-value=9.3 Score=39.84 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccc-----ccCccCccccchhhccc
Q 017727 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQK-----IGLKRCGKSCRLRWLNY 61 (367)
Q Consensus 11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~-----lg~~Rs~kQCR~RW~n~ 61 (367)
.+....||.||.+-|..++++|-- .|-.||.. .+..|+-....+||..+
T Consensus 127 ~l~dn~WskeETD~LF~lck~fDL--Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v 180 (445)
T KOG2656|consen 127 HLNDNSWSKEETDYLFDLCKRFDL--RFFVIADRYDNQQYKKSRTVEDLKERYYSV 180 (445)
T ss_pred hhccccccHHHHHHHHHHHHhcCe--eEEEEeeccchhhccccccHHHHHHHHHHH
Confidence 344567999999999999999987 89999998 66669999999999665
No 70
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=50.89 E-value=32 Score=27.97 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 74 EEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 74 EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
+.|..|+.+....|. .+..||+.+ |-+...|+.+...+.+..+..
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 568888888888774 799999999 999999999999998887665
No 71
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=50.82 E-value=38 Score=27.38 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCC-----CCHHHHHHHHHHHhhh
Q 017727 78 IICSLYISIGS--------RWSIIAAQLPG-----RTDNDIKNYWNTRLKK 115 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LPG-----RT~~qcKnRW~~~Lkk 115 (367)
.|..+|.+.|+ +|..||..|.- .....+|..|..+|.+
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 57777888775 69999999832 2467889999888765
No 72
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=49.28 E-value=23 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=22.9
Q ss_pred CHHHHHhhCCC-CCHHHHHHHHHHHhhhHh
Q 017727 89 RWSIIAAQLPG-RTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 89 kWskIAk~LPG-RT~~qcKnRW~~~Lkkkl 117 (367)
-|..||..|.. -+..+|+.||+++...-.
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~ 57 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDRYR 57 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 49999999953 678899999998665433
No 73
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=46.79 E-value=27 Score=31.85 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHH
Q 017727 70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~ 111 (367)
.||+|+.++|.+|. .-|-.=++||+.|.|.|.+.|.-+-+.
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhc
Confidence 59999999999887 457888999999987999999876553
No 74
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=46.61 E-value=46 Score=26.98 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 81 SLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 81 eLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.++-..|..+.+||+.+ |-|...|+.+....+++
T Consensus 120 ~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 120 VLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred hhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34334577899999999 77999999888775443
No 75
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=46.49 E-value=19 Score=39.24 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHH
Q 017727 66 IKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111 (367)
Q Consensus 66 ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~ 111 (367)
...++|+.+|-++-..+....|...+.|+..+|+|+..|||.++..
T Consensus 407 ~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred cccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999987743
No 76
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=45.96 E-value=32 Score=28.14 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 017727 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIK 106 (367)
Q Consensus 76 D~~LleLv~~~G~kWskIAk~LPGRT~~qcK 106 (367)
|+.|..+....|..|..+|.+| |=|..+|.
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I~ 31 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDIY 31 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 5678899999999999999999 66666553
No 77
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=44.57 E-value=45 Score=31.76 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhC---CCCCHHHHHHHHHHHhhhHh
Q 017727 70 GFSEEEDNIICSLYISIGSRWSIIAAQL---PGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G~kWskIAk~L---PGRT~~qcKnRW~~~Lkkkl 117 (367)
.|++++|-.|+.+|. .|+.-..|++-+ -.-|-..|..||+.+|-...
T Consensus 1 rW~~~DDl~Li~av~-~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~ 50 (199)
T PF13325_consen 1 RWKPEDDLLLINAVE-QTNDLESVHLGVKFSCKFTLQEIEERWYALLYDPV 50 (199)
T ss_pred CCCchhhHHHHHHHH-HhcCHHHHHccCCcCCcCcHHHHHHHHHHHHcChh
Confidence 499999999999885 466666666544 34689999999999986443
No 78
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=42.56 E-value=86 Score=26.26 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHh----CC----CHHHHHhhCC-----CCCHHHHHHHHHHHhhhH
Q 017727 69 GGFSEEEDNIICSLYISI----GS----RWSIIAAQLP-----GRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 69 g~WT~EED~~LleLv~~~----G~----kWskIAk~LP-----GRT~~qcKnRW~~~Lkkk 116 (367)
.-||++++..|++.+..| |. .|..+-..+. .=|..|+.++-+.+.++-
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 469999999999998776 62 4555444332 237788888776655443
No 79
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=39.89 E-value=65 Score=27.65 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=24.0
Q ss_pred HHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727 82 LYISIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 82 Lv~~~G~kWskIAk~LPGRT~~qcKnRW~~~L 113 (367)
+....|-.+.+||+.| |.+...|+.+....+
T Consensus 139 l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~ 169 (182)
T PRK09652 139 LREIEGLSYEEIAEIM-GCPIGTVRSRIFRAR 169 (182)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3334567899999999 899999988876533
No 80
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=38.46 E-value=1e+02 Score=20.51 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHH
Q 017727 75 EDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111 (367)
Q Consensus 75 ED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~ 111 (367)
++..++.++..-|-.+..||+.+ |-+...|+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~ 49 (55)
T cd06171 14 REREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHR 49 (55)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHH
Confidence 34555566556778999999998 7777777765544
No 81
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=38.20 E-value=55 Score=26.78 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 76 D~~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
|..|..+....|..|.++|..| |=+...|..
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~~ 34 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEINQ 34 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHHHH
Confidence 6778888999999999999999 666665543
No 82
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=37.77 E-value=71 Score=27.34 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=22.8
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~L 113 (367)
..|-...+||+.| |-|...|+++.....
T Consensus 139 ~~~~~~~eIA~~l-gis~~tv~~~~~ra~ 166 (179)
T PRK11924 139 VEGLSYREIAEIL-GVPVGTVKSRLRRAR 166 (179)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3466899999999 899999998876643
No 83
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=37.04 E-value=43 Score=26.80 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 76 D~~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
|..|..+.+..|..|.++|++| |=+..+|..
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI~~ 34 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDIDL 34 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567888899999999999999 666655543
No 84
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=36.35 E-value=33 Score=37.86 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCc---------cCccccchhhccccc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLK---------RCGKSCRLRWLNYLR 63 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~---------Rs~kQCR~RW~n~L~ 63 (367)
|..||..|.+-...+++.+|. ++.+|-+.+... ++-.|.|.+|++.++
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK--dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK--DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc--cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 668999999999999999998 898884333222 334567877766543
No 85
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=35.68 E-value=13 Score=26.52 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcc
Q 017727 20 EEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60 (367)
Q Consensus 20 EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n 60 (367)
+=|.+|+.+...-|. ..|..||+.+| =+...|+.|+..
T Consensus 3 ~~D~~Il~~Lq~d~r-~s~~~la~~lg--lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGR-RSYAELAEELG--LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TT-S-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-ccHHHHHHHHC--cCHHHHHHHHHH
Confidence 458899999999887 79999999996 777788887653
No 86
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=34.63 E-value=75 Score=27.20 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727 73 EEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR 121 (367)
Q Consensus 73 ~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr 121 (367)
.+-|.+|+++.+.-+. .+..||+.+ |-|...|++|-+.+.+..+.++-
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCceeeE
Confidence 3567788888777775 799999999 99999999999988888776543
No 87
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=34.62 E-value=19 Score=40.45 Aligned_cols=44 Identities=14% Similarity=0.380 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n 60 (367)
.-.||+.|-.++.+++-.|.. ++..|++.+. +++.+||-+-|..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~K--DF~~v~km~~-~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSK--DFIFVQKMVK-SKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhcc--cHHHHHHHhc-cccHHHHHHHHHH
Confidence 356999999999999999987 8999999998 9999999886644
No 88
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=34.55 E-value=87 Score=28.14 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=23.5
Q ss_pred HHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727 84 ISIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 84 ~~~G~kWskIAk~LPGRT~~qcKnRW~~~L 113 (367)
...|-...+||..| |-+...|++|+...+
T Consensus 147 ~~~g~s~~EIA~~l-g~s~~tV~~rl~rar 175 (192)
T PRK09643 147 DMQGYSVADAARML-GVAEGTVKSRCARGR 175 (192)
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 34567899999999 999999999985433
No 89
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=33.78 E-value=90 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 76 D~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~L 113 (367)
...++++..-.|-.+.+||+.| |-|...|+.+|....
T Consensus 140 ~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR 176 (185)
T PF07638_consen 140 QRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRAR 176 (185)
T ss_pred HHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3444445445577999999999 999999999998764
No 90
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.61 E-value=63 Score=26.21 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 017727 79 ICSLYISIGSRWSIIAAQLPGRTDNDIK 106 (367)
Q Consensus 79 LleLv~~~G~kWskIAk~LPGRT~~qcK 106 (367)
|..+....|..|.++|++| |-+..+|.
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI~ 36 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEIR 36 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3346688899999999999 77777663
No 91
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=32.89 E-value=94 Score=27.14 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=22.5
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|..+.+||..| |-|...|+++.....+
T Consensus 151 ~~~s~~eIA~~l-gis~~~v~~~l~Rar~ 178 (187)
T PRK09641 151 EDLSLKEISEIL-DLPVGTVKTRIHRGRE 178 (187)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 466899999999 9999999988765443
No 92
>PRK04217 hypothetical protein; Provisional
Probab=32.21 E-value=1.1e+02 Score=26.39 Aligned_cols=44 Identities=14% Similarity=-0.055 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 69 GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 69 g~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..-|.+| ..++.+....|-...+||+.+ |-+...|+.+++...+
T Consensus 41 ~~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArk 84 (110)
T PRK04217 41 IFMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARK 84 (110)
T ss_pred ccCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3455666 677777777888999999999 9999999999886443
No 93
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=31.98 E-value=1e+02 Score=27.89 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC----CCCHHHHHHHHHHHh
Q 017727 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLP----GRTDNDIKNYWNTRL 113 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LP----GRT~~qcKnRW~~~L 113 (367)
....-|..|...|..|+.+||..+...+.-.. -.|..||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 45578899999999999999999999996442 489999998876543
No 94
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=31.24 E-value=19 Score=31.72 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCC
Q 017727 19 PEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNI 66 (367)
Q Consensus 19 ~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~i 66 (367)
.+-|.+|+.+.++-|. ..|..||+.+| -+...|+.|+.+....++
T Consensus 8 D~~D~~Il~~Lq~d~R-~s~~eiA~~lg--lS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 8 DNLDRGILEALMENAR-TPYAELAKQFG--VSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred CHHHHHHHHHHHHcCC-CCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 3579999999999887 79999999996 888899999987655443
No 95
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=31.10 E-value=79 Score=26.90 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL 62 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 62 (367)
++..||.|+-..++..+...|. .-..||..++. ..+-..+|.+.+
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g~--sv~evA~e~gI---s~~tl~~W~r~y 53 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPGM--TVSLVARQHGV---AASQLFLWRKQY 53 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCCC--CHHHHHHHHCc---CHHHHHHHHHHH
Confidence 4577999998877777766665 67788888873 333445676654
No 96
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=29.31 E-value=75 Score=24.82 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=22.9
Q ss_pred HHHHHHHHHHH-hCCCHHHHHhhCCCCCHHHHH
Q 017727 75 EDNIICSLYIS-IGSRWSIIAAQLPGRTDNDIK 106 (367)
Q Consensus 75 ED~~LleLv~~-~G~kWskIAk~LPGRT~~qcK 106 (367)
-+..|..++.. .|..|..+|+.| |=+..+|.
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~L-g~~~~~i~ 35 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKL-GLSEADID 35 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHc-CCCHHHHH
Confidence 34567777777 899999999999 44555543
No 97
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=29.00 E-value=94 Score=27.21 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=22.2
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|-...+||..| |-|...|+++....++
T Consensus 153 ~~~s~~EIA~~l-gis~~tv~~~l~rar~ 180 (190)
T TIGR02939 153 EGLSYEDIARIM-DCPVGTVRSRIFRARE 180 (190)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 355799999999 8889999988765443
No 98
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=28.86 E-value=82 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 76 D~~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
|..|-.+....|..|..+|+.| |=+...|..
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 4567778889999999999999 777776654
No 99
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=28.64 E-value=1.2e+02 Score=26.18 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=22.6
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.|-...+||..| |-|...|+++....+++
T Consensus 134 ~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~ 162 (169)
T TIGR02954 134 HDLTIKEIAEVM-NKPEGTVKTYLHRALKK 162 (169)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 455789999999 88999999888765543
No 100
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=28.20 E-value=1.4e+02 Score=26.07 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 79 ICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 79 LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
++.|....|-...+||..| |.+...|+.+-..-+++
T Consensus 127 v~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 162 (172)
T PRK12523 127 AFLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQ 162 (172)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3333344567899999999 99999999987665544
No 101
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=27.95 E-value=1.5e+02 Score=25.15 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=23.2
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..|-.-.+||..| |-+...|+.|....++
T Consensus 120 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~ 148 (161)
T PRK09047 120 WEDMDVAETAAAM-GCSEGSVKTHCSRATH 148 (161)
T ss_pred HhcCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3466789999999 9999999998765443
No 102
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=27.88 E-value=1.4e+02 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=23.6
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..|-...+||..| |-+...|+.+....+++
T Consensus 145 ~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~ 174 (184)
T PRK12512 145 VEGASIKETAAKL-SMSEGAVRVALHRGLAA 174 (184)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999987655443
No 103
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=27.79 E-value=1.2e+02 Score=26.50 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=21.9
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|..-.+||..| |.|...|+++....++
T Consensus 151 ~g~s~~eIA~~l-gis~~~v~~~l~Rar~ 178 (187)
T TIGR02948 151 EDLSLKEISEIL-DLPVGTVKTRIHRGRE 178 (187)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 356789999999 8899999988765443
No 104
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=27.73 E-value=57 Score=38.76 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHh-CCCHH
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISI-GSRWS 91 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~-G~kWs 91 (367)
.---|..++|.+|+-.|-+||. ++|.+|-.-- .-|... ...+...+-.+.+=..+-..|+.+...+ +.+|.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGy-gswe~Ir~Dp------~L~l~d-Ki~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~ 1203 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGY-GSWEAIRLDP------DLGLTD-KIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTP 1203 (1373)
T ss_pred cccCCCchhhhhHhhhhhhccc-ccHHHhccCc------cccchh-hhcccccCCchHHHHHHHHHHHHHHhhcccCCCc
Confidence 3455999999999999999999 8999873211 111110 0111111334445555666666666655 44454
Q ss_pred HHH
Q 017727 92 IIA 94 (367)
Q Consensus 92 kIA 94 (367)
+..
T Consensus 1204 ~~~ 1206 (1373)
T KOG0384|consen 1204 KKL 1206 (1373)
T ss_pred hhh
Confidence 433
No 105
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=27.62 E-value=18 Score=32.39 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCC
Q 017727 19 PEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNI 66 (367)
Q Consensus 19 ~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~i 66 (367)
.+-|.+|+.+.++-|. ..|..||+.+| -+...|+.|+.+..+.++
T Consensus 13 D~~D~~IL~~Lq~d~R-~s~~eiA~~lg--lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGR-ISNVELSKRVG--LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCC-CCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 5679999999999887 79999999996 778889999877655443
No 106
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=27.59 E-value=1.3e+02 Score=20.95 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHH
Q 017727 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNY 108 (367)
Q Consensus 74 EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnR 108 (367)
-|...|.++...++++.++.|+.| |=+...+..+
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~k 38 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL-GISRRTLYRK 38 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHH
Confidence 367889999999999999999999 6666555543
No 107
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=27.53 E-value=32 Score=31.37 Aligned_cols=34 Identities=18% Similarity=0.447 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceeeccccc-CccCcc
Q 017727 16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIG-LKRCGK 52 (367)
Q Consensus 16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg-~~Rs~k 52 (367)
.||.|+.++|.+|..+ |. .=.+||..|| ..|++.
T Consensus 2 ~Wtde~~~~L~~lw~~-G~--SasqIA~~lg~vsRnAV 36 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GL--SASQIARQLGGVSRNAV 36 (162)
T ss_pred CCCHHHHHHHHHHHHc-CC--CHHHHHHHhCCcchhhh
Confidence 4999999999999865 65 7899999998 455443
No 108
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=27.46 E-value=1.3e+02 Score=26.79 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=23.6
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..|-...+||..| |-|...|+.+....++
T Consensus 120 ~~g~~~~EIA~~l-gis~~tV~~~l~Rar~ 148 (181)
T PRK09637 120 LEGLSQKEIAEKL-GLSLSGAKSRVQRGRV 148 (181)
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4567899999999 9999999998865443
No 109
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=27.36 E-value=1.4e+02 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=23.0
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..|....+||..| |-+...|+.+....++
T Consensus 153 ~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~ 181 (189)
T PRK09648 153 VVGLSAEETAEAV-GSTPGAVRVAQHRALA 181 (189)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3466899999999 8899999988765443
No 110
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=27.09 E-value=1.9e+02 Score=25.75 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=21.9
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTR 112 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~ 112 (367)
..|-.-.+||..| |-|...|+.|....
T Consensus 150 ~~g~s~~EIA~~l-gis~~tVk~~l~Ra 176 (195)
T PRK12532 150 ILGFSSDEIQQMC-GISTSNYHTIMHRA 176 (195)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHH
Confidence 3466789999999 99999999887653
No 111
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=26.97 E-value=1.5e+02 Score=26.62 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=22.3
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|-...+||..| |-|...|+.|....++
T Consensus 156 eg~s~~EIA~~l-gis~~tVk~rl~ra~~ 183 (194)
T PRK12531 156 EELPHQQVAEMF-DIPLGTVKSRLRLAVE 183 (194)
T ss_pred cCCCHHHHHHHh-CcCHHHHHHHHHHHHH
Confidence 466789999999 9999999988765444
No 112
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=26.75 E-value=1.7e+02 Score=30.04 Aligned_cols=87 Identities=17% Similarity=0.324 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHHHh-CC-CCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHH-h----
Q 017727 14 KGPWSPEEDAKLKDYIEKY-GT-GGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYIS-I---- 86 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~ky-G~-~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~-~---- 86 (367)
-..||.-|...|+.+.+.. |. .-+-..|++.+. +|+..++++ |.+.|+ ++.+.+++++ |
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~-~Rs~aEI~~-fl~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELP-GRSEAEIRD-FLQQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhcc-CcCHHHHHH-HHHHHH------------HHHHHHHHHHhccccc
Confidence 4569999999999988865 42 124456777887 898888876 333333 3455556555 2
Q ss_pred -CC------------CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 87 -GS------------RWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 87 -G~------------kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
|. -|..+|+.+.|.-...+---|-.+|-
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 21 19999999999999999988887774
No 113
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=26.63 E-value=1.5e+02 Score=25.67 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=23.1
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..|-.-.+||..| |.+...|+.|....++
T Consensus 132 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~ 160 (173)
T PRK09645 132 YRGWSTAQIAADL-GIPEGTVKSRLHYALR 160 (173)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3466789999999 9999999998775543
No 114
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=26.50 E-value=49 Score=36.25 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcc
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n 60 (367)
..+....++|+.+|-++...+....|. +...|+..++ .|..+|++..+..
T Consensus 403 ~sk~~~~~~w~~se~e~fyka~~~~gs--~~slis~l~p-~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 403 YSKKLETDKWDASETELFYKALSERGS--DFSLISNLFP-LRDRKQIKAKFKK 452 (584)
T ss_pred ccCccccCcccchhhHHhhhHHhhhcc--cccccccccc-cccHHHHHHHHhh
Confidence 345667889999999999999999998 8999999998 9999999987754
No 115
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=26.43 E-value=2.1e+02 Score=30.28 Aligned_cols=28 Identities=21% Similarity=0.541 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 017727 7 CDKANVKKGPWSPEEDAKLKDYIEKYGT 34 (367)
Q Consensus 7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~ 34 (367)
.++.+.-.|.|++.=|+...++...|.+
T Consensus 69 ~D~~~daegvWSpdIEqsFqEALaiypp 96 (455)
T KOG3841|consen 69 TDNQRDAEGVWSPDIEQSFQEALAIYPP 96 (455)
T ss_pred CccccccccccChhHHHHHHHHHhhcCC
Confidence 3444466788999999999999998866
No 116
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=26.28 E-value=1.6e+02 Score=26.47 Aligned_cols=34 Identities=9% Similarity=-0.016 Sum_probs=25.0
Q ss_pred HHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 80 CSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 80 leLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
+.+....|-...+||..| |-|...|+.|....++
T Consensus 140 ~~l~~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~ 173 (188)
T TIGR02943 140 FMMREVLGFESDEICQEL-EISTSNCHVLLYRARL 173 (188)
T ss_pred HHHHHHhCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 333334567899999999 9999999888765443
No 117
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=26.12 E-value=1.6e+02 Score=26.19 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=23.4
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..|-...+||..| |-|...|+++....++
T Consensus 145 ~~~~s~~eIA~~l-gis~~tV~~~l~Rar~ 173 (189)
T PRK12515 145 YHEKSVEEVGEIV-GIPESTVKTRMFYARK 173 (189)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3466799999999 8899999999876443
No 118
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=25.80 E-value=1.9e+02 Score=25.61 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=26.6
Q ss_pred HHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 84 ISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 84 ~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
...|-...+||..| |-+...|+.|....+++-+
T Consensus 140 ~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~~ 172 (178)
T PRK12529 140 TLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTCL 172 (178)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 34466899999999 9999999999887666543
No 119
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=25.24 E-value=1.4e+02 Score=26.37 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=21.7
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|-...+||..| |-|...|+.+....++
T Consensus 153 ~g~s~~eIA~~l-gis~~tv~~~l~Rar~ 180 (193)
T PRK11923 153 DGLSYEDIASVM-QCPVGTVRSRIFRARE 180 (193)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 355789999999 8889999988765443
No 120
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=24.83 E-value=1.6e+02 Score=26.29 Aligned_cols=27 Identities=4% Similarity=-0.027 Sum_probs=22.5
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~L 113 (367)
.|-...+||..| |-+...|+.|....+
T Consensus 149 ~g~s~~EIA~~l-gis~~tVk~~l~RAr 175 (189)
T PRK12530 149 LELSSEQICQEC-DISTSNLHVLLYRAR 175 (189)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 466899999999 999999999876443
No 121
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=24.82 E-value=1.1e+02 Score=26.33 Aligned_cols=47 Identities=19% Similarity=0.383 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHh------------CC-C------------------HHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 70 GFSEEEDNIICSLYISI------------GS-R------------------WSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~------------G~-k------------------WskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
.||.+||-.|...|.++ |. . ....++..|..|.+.-|+||+..+..-
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p~HT~~sWRDR~RKfv~~~ 78 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNPRHTENSWRDRYRKFVSEY 78 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTTTS-HHHHHHHHHHTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCCccchhHHHHHHHHHHHHc
Confidence 47999999999888653 11 1 677788899999999999999877644
No 122
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=24.58 E-value=1.8e+02 Score=24.82 Aligned_cols=29 Identities=14% Similarity=-0.073 Sum_probs=22.8
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..|-.-.+||..| |-+...|++|....++
T Consensus 120 ~~g~s~~EIA~~l-gis~~tV~~~l~Rar~ 148 (160)
T PRK09642 120 LEEKSYQEIALQE-KIEVKTVEMKLYRARK 148 (160)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3466789999999 9999999988765443
No 123
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=24.48 E-value=97 Score=25.32 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 77 NIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 77 ~~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
+.|-.+....|..|..+|+.| |=+..+|..
T Consensus 3 ~~l~~l~~~lG~~Wk~lar~L-G~s~~eI~~ 32 (86)
T cd08777 3 KHLDLLRENLGKKWKRCARKL-GFTESEIEE 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 345556678899999999999 788877765
No 124
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=24.32 E-value=1.6e+02 Score=25.74 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=25.6
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~ 118 (367)
.|-...+||+.| |-+...|+.+....++.-++
T Consensus 134 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~~~~ 165 (172)
T PRK09651 134 DGLTYSEIAHKL-GVSVSSVKKYVAKATEHCLL 165 (172)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Confidence 455799999999 99999999998776665443
No 125
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=24.27 E-value=1e+02 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCH
Q 017727 76 DNIICSLYISIGSRWSIIAAQLPGRTD 102 (367)
Q Consensus 76 D~~LleLv~~~G~kWskIAk~LPGRT~ 102 (367)
|.+|-.+....|..|.++|.+| |=+.
T Consensus 4 ~~~l~~Ia~~LG~dW~~Lar~L-~vs~ 29 (84)
T cd08805 4 EMKMAVIREHLGLSWAELAREL-QFSV 29 (84)
T ss_pred hhHHHHHHHHhcchHHHHHHHc-CCCH
Confidence 5677788899999999999998 4444
No 126
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=23.47 E-value=2e+02 Score=24.30 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=21.2
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|-...+||..| |.+...|+.+-...++
T Consensus 121 ~~~s~~EIA~~l-~is~~tV~~~~~ra~~ 148 (154)
T PRK06759 121 VGKTMGEIALET-EMTYYQVRWIYRQALE 148 (154)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 355789999998 8899999887655443
No 127
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=22.80 E-value=1.9e+02 Score=21.75 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHH
Q 017727 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYW 109 (367)
Q Consensus 74 EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW 109 (367)
++|+-.+.++...|-.=.+||+.+ ||+.+.|+++-
T Consensus 7 ~~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~yl 41 (50)
T PF11427_consen 7 DAEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRYL 41 (50)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHHh
Confidence 455666778888999999999999 99999888754
No 128
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=22.52 E-value=2e+02 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=21.3
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|-.-.+||+.| |-+...|+.+-...++
T Consensus 137 ~g~s~~eIA~~l-~is~~tv~~~l~ra~~ 164 (170)
T TIGR02952 137 QNLPIAEVARIL-GKTEGAVKILQFRAIK 164 (170)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 356789999999 8888888887654433
No 129
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=22.15 E-value=2e+02 Score=25.80 Aligned_cols=28 Identities=11% Similarity=-0.079 Sum_probs=21.7
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~L 113 (367)
..|-.+.+||+.| |-+...|+.+-...+
T Consensus 150 ~~g~s~~eIA~~l-gis~~tV~~~l~Ra~ 177 (196)
T PRK12524 150 IEGLSNPEIAEVM-EIGVEAVESLTARGK 177 (196)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3466899999999 888888888765543
No 130
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=22.06 E-value=2.3e+02 Score=24.27 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=22.1
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|-.-.+||..| |-+...|+.|....++
T Consensus 120 ~~~s~~eIA~~l-gis~~tv~~~l~ra~~ 147 (159)
T PRK12527 120 EGLSHQQIAEHL-GISRSLVEKHIVNAMK 147 (159)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 455789999999 9999999998764443
No 131
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=21.51 E-value=1.9e+02 Score=29.12 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHH
Q 017727 15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYIS 85 (367)
Q Consensus 15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~ 85 (367)
.|||.|+-..|++...++|. |-=..| .+.+.--|.+|+. +++++|-..|.+|+..
T Consensus 10 ~PWs~e~R~~l~~f~~~~km--N~YiYA-----PKdDpyhr~~Wre---------~Yp~~el~~l~~L~~~ 64 (306)
T PF07555_consen 10 RPWSHEDRLDLIRFLGRYKM--NTYIYA-----PKDDPYHRSKWRE---------PYPEEELAELKELADA 64 (306)
T ss_dssp S---HHHHHHHHHHHHHTT----EEEE-------TT-TTTTTTTTS------------HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC--ceEEEC-----CCCChHHHhhhcc---------cCCHHHHHHHHHHHHH
Confidence 48999999999999999998 322222 2344444556643 5666666666666543
No 132
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=21.43 E-value=2.1e+02 Score=24.98 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=22.2
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|-.-.+||..| |.|...|+.+....++
T Consensus 144 ~g~s~~eIA~~l-gis~~tV~~~l~Rar~ 171 (179)
T PRK12514 144 EGLSYKELAERH-DVPLNTMRTWLRRSLL 171 (179)
T ss_pred cCCCHHHHHHHH-CCChHHHHHHHHHHHH
Confidence 356789999999 9999999988765443
No 133
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=21.28 E-value=1.1e+02 Score=24.54 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 73 EEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 73 ~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
.||-++|+.. -..|..|..+|..| |=+...|++
T Consensus 2 ~~~v~~ll~~-~nlG~dW~~LA~~L-G~~~~~I~~ 34 (77)
T cd08311 2 QEEVEKLLES-GRPGRDWRSLAGEL-GYEDEAIDT 34 (77)
T ss_pred hHHHHHHHhC-CCCccCHHHHHHHc-CCCHHHHHH
Confidence 5777777732 25678999999999 777777765
No 134
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=21.27 E-value=2.3e+02 Score=24.23 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=23.3
Q ss_pred HHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 84 ISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 84 ~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.-.|-...+||..+ |-+...|+.|....++
T Consensus 126 ~~~g~s~~EIA~~l-~is~~tV~~~l~ra~~ 155 (161)
T PRK12528 126 QVDGLGYGEIATEL-GISLATVKRYLNKAAM 155 (161)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 33566899999999 8999999988765543
No 135
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=21.19 E-value=2.9e+02 Score=22.81 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCC-CHHHHHHHH
Q 017727 68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGR-TDNDIKNYW 109 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGR-T~~qcKnRW 109 (367)
+..||.|.-..+++++..-|..=+.||+.+ |- ..++++..+
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~-gv~~~~~l~~W~ 46 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREF-GIVSATQLYKWR 46 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHh-CCCChHHHHHHH
Confidence 568999999999999999999899999999 75 666665433
No 136
>PRK12536 RNA polymerase sigma factor; Provisional
Probab=20.82 E-value=2.3e+02 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.076 Sum_probs=23.7
Q ss_pred HHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 84 ISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 84 ~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
...|-...+||+.| |.+...|+++-...++
T Consensus 142 ~~~g~s~~EIA~~l-~is~~tV~~~l~rar~ 171 (181)
T PRK12536 142 KLEGLSVAETAQLT-GLSESAVKVGIHRGLK 171 (181)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34566899999999 9999999998765443
No 137
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=20.72 E-value=2.4e+02 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.3
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
.|-...+||..| |-+...|+.|....++
T Consensus 149 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~ 176 (183)
T TIGR02999 149 AGLTVEEIAELL-GVSVRTVERDWRFARA 176 (183)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 455789999999 9999999998765443
No 138
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=20.67 E-value=2.1e+02 Score=25.52 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=23.1
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 86 IGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 86 ~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.|-.-.+||..| |-+...|+.|....+++
T Consensus 145 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 173 (185)
T PRK09649 145 LGLSYADAAAVC-GCPVGTIRSRVARARDA 173 (185)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 455789999999 99999999988655443
No 139
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=20.27 E-value=1.3e+02 Score=24.41 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCHHHHHhhCCCCCHH---HHHHHH
Q 017727 77 NIICSLYISIGSRWSIIAAQLPGRTDN---DIKNYW 109 (367)
Q Consensus 77 ~~LleLv~~~G~kWskIAk~LPGRT~~---qcKnRW 109 (367)
..|..+....|..|..+|.+| |=+.. .|+.+|
T Consensus 3 ~~l~~ia~~LG~~Wk~lar~L-Glse~~Id~Ie~~~ 37 (86)
T cd08779 3 SNLLSIAGRLGLDWQAIGLHL-GLSYRELQRIKYNN 37 (86)
T ss_pred hHHHHHHHHHhHHHHHHHHHc-CCCHHHHHHHHHHC
Confidence 457888999999999999998 43333 344444
Done!