Query 017727
Match_columns 367
No_of_seqs 298 out of 1381
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 7.3E-34 2.5E-38 234.0 10.0 105 11-117 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.7E-33 9.4E-38 232.4 9.2 103 14-118 1-103 (107)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 6E-33 2E-37 236.4 8.9 109 7-117 20-128 (128)
4 3osg_A MYB21; transcription-DN 100.0 1E-32 3.4E-37 235.3 10.2 106 8-116 5-110 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 9E-33 3.1E-37 236.7 9.6 104 14-119 2-105 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 8.3E-31 2.8E-35 230.4 7.9 108 8-117 52-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 7.3E-30 2.5E-34 224.4 6.2 104 11-116 3-107 (159)
8 2dim_A Cell division cycle 5-l 99.8 1.6E-21 5.4E-26 150.7 2.2 67 8-76 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 6.4E-21 2.2E-25 162.1 5.9 75 41-116 1-76 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 4E-18 1.4E-22 160.4 7.2 107 9-116 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 6.1E-18 2.1E-22 133.2 5.4 59 54-113 9-67 (73)
12 2din_A Cell division cycle 5-l 99.7 4.6E-17 1.6E-21 124.3 6.6 58 61-119 2-59 (66)
13 2juh_A Telomere binding protei 99.7 2.8E-17 9.5E-22 140.8 3.4 84 8-92 11-103 (121)
14 2d9a_A B-MYB, MYB-related prot 99.7 1E-16 3.6E-21 120.0 5.8 56 63-118 3-59 (60)
15 2cu7_A KIAA1915 protein; nucle 99.7 2.4E-16 8.2E-21 122.4 8.0 58 62-119 3-60 (72)
16 2d9a_A B-MYB, MYB-related prot 99.6 4.7E-17 1.6E-21 121.9 3.2 57 9-67 3-59 (60)
17 1gvd_A MYB proto-oncogene prot 99.6 7.1E-17 2.4E-21 117.7 3.1 52 12-65 1-52 (52)
18 2roh_A RTBP1, telomere binding 99.6 1.4E-16 4.8E-21 136.6 4.8 80 9-89 26-114 (122)
19 1guu_A C-MYB, MYB proto-oncoge 99.6 6.8E-16 2.3E-20 112.4 6.5 50 66-115 1-51 (52)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 1.2E-16 4E-21 116.4 2.3 52 12-65 1-52 (52)
21 1ity_A TRF1; helix-turn-helix, 99.6 2E-16 6.7E-21 121.9 3.1 64 8-72 4-68 (69)
22 2dim_A Cell division cycle 5-l 99.6 9.3E-16 3.2E-20 118.3 5.9 57 63-119 4-61 (70)
23 1gvd_A MYB proto-oncogene prot 99.6 1.3E-15 4.3E-20 111.1 6.2 50 66-115 1-51 (52)
24 1ity_A TRF1; helix-turn-helix, 99.6 1.8E-15 6.2E-20 116.5 7.1 59 61-119 3-64 (69)
25 1w0t_A Telomeric repeat bindin 99.6 2.4E-15 8.4E-20 110.2 6.9 50 67-116 1-53 (53)
26 1x41_A Transcriptional adaptor 99.6 3.2E-15 1.1E-19 112.4 6.3 53 63-115 3-56 (60)
27 3sjm_A Telomeric repeat-bindin 99.5 1.1E-14 3.6E-19 111.6 7.0 52 66-117 9-63 (64)
28 3sjm_A Telomeric repeat-bindin 99.5 1.6E-15 5.4E-20 116.2 2.3 56 11-67 8-64 (64)
29 2yum_A ZZZ3 protein, zinc fing 99.5 6.2E-15 2.1E-19 114.9 5.5 57 63-119 3-65 (75)
30 1x41_A Transcriptional adaptor 99.5 2.4E-15 8.4E-20 113.1 2.7 55 9-65 3-57 (60)
31 2din_A Cell division cycle 5-l 99.5 1.1E-15 3.6E-20 116.7 0.2 60 7-70 2-61 (66)
32 2elk_A SPCC24B10.08C protein; 99.5 3.5E-14 1.2E-18 106.3 6.8 50 64-113 5-56 (58)
33 2yum_A ZZZ3 protein, zinc fing 99.5 3.6E-15 1.2E-19 116.3 0.9 62 8-70 2-67 (75)
34 1w0t_A Telomeric repeat bindin 99.5 9.2E-15 3.2E-19 107.1 2.2 50 13-63 1-51 (53)
35 2ltp_A Nuclear receptor corepr 99.2 4.7E-15 1.6E-19 120.1 0.0 57 61-117 9-65 (89)
36 2elk_A SPCC24B10.08C protein; 99.5 1.5E-14 5.2E-19 108.3 2.7 52 10-62 5-56 (58)
37 2cu7_A KIAA1915 protein; nucle 99.4 1.6E-14 5.5E-19 112.1 1.5 58 8-68 3-60 (72)
38 2aje_A Telomere repeat-binding 99.4 2E-13 6.8E-18 114.3 4.5 83 4-87 3-94 (105)
39 2cqr_A RSGI RUH-043, DNAJ homo 99.4 4.9E-13 1.7E-17 105.1 5.9 52 64-115 14-69 (73)
40 3osg_A MYB21; transcription-DN 99.4 5.7E-13 2E-17 113.2 6.7 55 63-117 6-60 (126)
41 1gv2_A C-MYB, MYB proto-oncoge 99.4 5.4E-13 1.8E-17 109.3 5.5 51 65-115 1-52 (105)
42 2llk_A Cyclin-D-binding MYB-li 99.3 3.4E-13 1.2E-17 106.1 3.0 58 6-68 15-72 (73)
43 3zqc_A MYB3; transcription-DNA 99.3 3.3E-13 1.1E-17 115.2 2.8 84 7-97 47-130 (131)
44 2ckx_A NGTRF1, telomere bindin 99.3 7.8E-13 2.7E-17 106.4 4.7 69 15-85 1-79 (83)
45 2yus_A SWI/SNF-related matrix- 99.3 1.4E-12 4.7E-17 103.8 5.1 48 65-112 15-62 (79)
46 2k9n_A MYB24; R2R3 domain, DNA 99.3 2.8E-12 9.5E-17 106.0 5.8 50 68-117 1-51 (107)
47 2yus_A SWI/SNF-related matrix- 99.3 1.7E-12 5.8E-17 103.3 3.0 53 6-61 10-62 (79)
48 2ckx_A NGTRF1, telomere bindin 99.3 9.5E-12 3.3E-16 100.0 7.3 49 69-117 1-54 (83)
49 1ign_A Protein (RAP1); RAP1,ye 99.2 3.6E-12 1.2E-16 120.1 4.8 55 64-118 4-64 (246)
50 2ltp_A Nuclear receptor corepr 98.9 1E-12 3.4E-17 106.3 0.0 55 7-64 9-63 (89)
51 2juh_A Telomere binding protei 99.2 1.3E-11 4.6E-16 105.6 6.5 55 62-116 11-70 (121)
52 1x58_A Hypothetical protein 49 99.2 1.8E-11 6.2E-16 93.7 6.4 49 67-115 7-58 (62)
53 2aje_A Telomere repeat-binding 99.2 2E-11 6.8E-16 102.2 7.1 54 63-116 8-66 (105)
54 2cjj_A Radialis; plant develop 99.2 2.8E-11 9.6E-16 99.2 6.5 50 67-116 7-60 (93)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.2 6.7E-12 2.3E-16 98.7 2.0 56 7-63 11-68 (73)
56 2roh_A RTBP1, telomere binding 99.1 7.5E-11 2.6E-15 101.1 7.2 54 63-116 26-84 (122)
57 2eqr_A N-COR1, N-COR, nuclear 99.0 8.8E-10 3E-14 83.2 6.6 48 67-114 11-58 (61)
58 3hm5_A DNA methyltransferase 1 98.9 1.8E-09 6E-14 88.7 7.2 65 52-120 18-87 (93)
59 2cjj_A Radialis; plant develop 98.8 5.9E-10 2E-14 91.4 0.8 49 13-62 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 5.9E-09 2E-13 81.6 6.1 50 65-115 5-58 (72)
61 2iw5_B Protein corest, REST co 98.6 2.9E-08 1E-12 93.0 6.7 49 67-115 132-180 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.6 2E-08 6.9E-13 75.7 2.9 52 7-61 5-56 (61)
63 1x58_A Hypothetical protein 49 98.6 1.5E-08 5.2E-13 77.5 2.2 49 12-63 6-57 (62)
64 1wgx_A KIAA1903 protein; MYB D 98.5 1.1E-07 3.8E-12 74.9 5.9 49 67-115 7-59 (73)
65 2xag_B REST corepressor 1; ami 98.4 2.4E-07 8.1E-12 94.9 5.6 46 69-114 381-426 (482)
66 1fex_A TRF2-interacting telome 98.4 3.8E-07 1.3E-11 68.7 5.0 47 68-114 2-58 (59)
67 2cqq_A RSGI RUH-037, DNAJ homo 98.3 8.7E-08 3E-12 75.0 0.8 52 10-63 4-57 (72)
68 1fex_A TRF2-interacting telome 98.2 3.1E-07 1.1E-11 69.2 1.0 48 14-63 2-58 (59)
69 2yqk_A Arginine-glutamic acid 98.1 8.9E-06 3E-10 61.7 7.0 49 63-111 4-53 (63)
70 1wgx_A KIAA1903 protein; MYB D 98.1 8.4E-07 2.9E-11 69.8 1.2 49 14-63 8-58 (73)
71 2iw5_B Protein corest, REST co 98.0 1.6E-06 5.6E-11 81.2 2.7 51 10-63 129-179 (235)
72 1ug2_A 2610100B20RIK gene prod 98.0 9.1E-06 3.1E-10 66.5 5.9 48 69-116 34-84 (95)
73 4eef_G F-HB80.4, designed hema 97.9 1.7E-06 5.7E-11 68.3 0.3 43 68-110 20-66 (74)
74 1ofc_X ISWI protein; nuclear p 97.9 2.5E-05 8.6E-10 75.9 8.5 99 15-115 111-275 (304)
75 4iej_A DNA methyltransferase 1 97.8 3.7E-05 1.3E-09 63.1 7.3 62 56-121 22-88 (93)
76 2lr8_A CAsp8-associated protei 97.0 3.1E-06 1.1E-10 65.9 0.0 45 70-115 16-63 (70)
77 4a69_C Nuclear receptor corepr 97.6 8.9E-05 3E-09 60.5 6.2 44 68-111 43-86 (94)
78 2crg_A Metastasis associated p 97.6 0.00016 5.3E-09 56.0 6.7 44 68-111 8-52 (70)
79 4eef_G F-HB80.4, designed hema 97.5 1.4E-05 4.7E-10 63.1 0.4 45 14-59 20-66 (74)
80 2yqk_A Arginine-glutamic acid 97.3 0.00014 4.8E-09 55.0 3.1 50 8-60 3-53 (63)
81 3hm5_A DNA methyltransferase 1 97.2 9E-05 3.1E-09 60.8 1.6 50 12-63 28-81 (93)
82 2ebi_A DNA binding protein GT- 97.1 0.00054 1.9E-08 54.1 4.8 49 68-116 4-66 (86)
83 2xag_B REST corepressor 1; ami 97.0 0.00024 8.2E-09 72.9 2.6 48 11-61 377-424 (482)
84 2y9y_A Imitation switch protei 96.7 0.0045 1.5E-07 61.7 9.1 100 15-115 124-291 (374)
85 4b4c_A Chromodomain-helicase-D 96.5 0.0056 1.9E-07 55.0 7.7 45 70-114 136-195 (211)
86 4a69_C Nuclear receptor corepr 96.4 0.0011 3.9E-08 53.9 1.8 43 14-59 43-85 (94)
87 2crg_A Metastasis associated p 96.2 0.0016 5.6E-08 50.2 2.0 45 13-60 7-52 (70)
88 2ebi_A DNA binding protein GT- 96.2 0.00048 1.6E-08 54.4 -1.3 50 13-62 3-63 (86)
89 1ug2_A 2610100B20RIK gene prod 96.1 0.0019 6.4E-08 52.9 1.8 46 14-60 33-79 (95)
90 2lr8_A CAsp8-associated protei 94.8 0.0014 4.8E-08 51.0 0.0 47 14-62 14-61 (70)
91 4iej_A DNA methyltransferase 1 94.1 0.017 6E-07 47.3 1.7 49 12-62 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 92.7 0.32 1.1E-05 37.2 6.6 47 66-112 5-56 (64)
93 4b4c_A Chromodomain-helicase-D 92.2 0.19 6.7E-06 44.9 5.8 51 66-116 5-60 (211)
94 1ofc_X ISWI protein; nuclear p 92.1 0.23 7.9E-06 48.2 6.5 48 68-115 110-158 (304)
95 1irz_A ARR10-B; helix-turn-hel 84.8 0.51 1.7E-05 36.0 2.5 50 11-60 4-55 (64)
96 2xb0_X Chromo domain-containin 82.5 0.99 3.4E-05 43.1 4.1 29 15-44 169-197 (270)
97 2xb0_X Chromo domain-containin 76.8 5.5 0.00019 37.9 7.2 48 68-115 3-55 (270)
98 2o8x_A Probable RNA polymerase 62.0 12 0.00042 26.4 4.8 41 74-115 18-58 (70)
99 2li6_A SWI/SNF chromatin-remod 57.6 8.7 0.0003 31.6 3.7 38 78-115 53-98 (116)
100 1ku3_A Sigma factor SIGA; heli 57.3 16 0.00055 26.6 4.8 41 74-115 13-57 (73)
101 2lm1_A Lysine-specific demethy 55.5 23 0.00077 28.4 5.8 38 78-115 48-97 (107)
102 2rq5_A Protein jumonji; develo 54.6 63 0.0022 26.9 8.6 77 12-115 5-96 (121)
103 2jrz_A Histone demethylase jar 53.4 20 0.0007 29.4 5.3 39 78-116 44-94 (117)
104 2p7v_B Sigma-70, RNA polymeras 52.2 17 0.00058 26.1 4.1 40 75-115 9-52 (68)
105 2cxy_A BAF250B subunit, HBAF25 49.6 27 0.00091 29.0 5.5 40 78-117 55-106 (125)
106 2rq5_A Protein jumonji; develo 49.4 5.7 0.00019 33.4 1.3 59 23-84 45-113 (121)
107 2eqy_A RBP2 like, jumonji, at 49.1 27 0.00092 28.9 5.4 39 78-116 46-96 (122)
108 1kkx_A Transcription regulator 47.8 15 0.00051 30.8 3.6 39 78-116 52-98 (123)
109 1u78_A TC3 transposase, transp 46.4 1E+02 0.0036 24.1 8.7 87 16-109 6-100 (141)
110 1c20_A DEAD ringer protein; DN 45.9 26 0.00088 29.2 4.8 41 77-117 55-108 (128)
111 2y9y_A Imitation switch protei 45.5 36 0.0012 33.9 6.5 47 68-114 123-171 (374)
112 3hug_A RNA polymerase sigma fa 43.9 32 0.0011 26.1 4.8 41 74-115 40-80 (92)
113 3i4p_A Transcriptional regulat 43.5 18 0.00062 30.5 3.6 45 74-119 3-48 (162)
114 3cz6_A DNA-binding protein RAP 42.2 16 0.00053 32.7 3.0 25 10-34 110-142 (168)
115 2li6_A SWI/SNF chromatin-remod 41.8 6 0.0002 32.6 0.3 40 24-64 53-98 (116)
116 2kk0_A AT-rich interactive dom 39.8 41 0.0014 28.7 5.2 39 78-116 68-119 (145)
117 2jxj_A Histone demethylase jar 38.6 19 0.00066 28.2 2.8 38 78-115 40-89 (96)
118 1x3u_A Transcriptional regulat 36.6 78 0.0027 22.7 5.8 42 71-115 17-58 (79)
119 1or7_A Sigma-24, RNA polymeras 36.4 57 0.0019 27.0 5.6 30 85-115 154-183 (194)
120 1tty_A Sigma-A, RNA polymerase 35.4 54 0.0018 24.7 4.8 40 75-115 22-65 (87)
121 2yqf_A Ankyrin-1; death domain 32.9 69 0.0024 25.7 5.3 35 72-107 14-48 (111)
122 2jrz_A Histone demethylase jar 32.7 9.5 0.00033 31.5 0.1 42 23-64 43-93 (117)
123 2dbb_A Putative HTH-type trans 32.5 69 0.0023 26.2 5.4 46 74-120 9-55 (151)
124 3ulq_B Transcriptional regulat 32.5 94 0.0032 23.9 5.9 46 67-115 26-71 (90)
125 3c57_A Two component transcrip 31.5 83 0.0029 24.1 5.4 43 70-115 27-69 (95)
126 1ig6_A MRF-2, modulator recogn 30.7 26 0.00088 28.2 2.4 38 78-115 37-87 (107)
127 1fse_A GERE; helix-turn-helix 30.4 88 0.003 21.9 5.0 44 69-115 10-53 (74)
128 1je8_A Nitrate/nitrite respons 30.1 83 0.0028 23.5 5.0 43 70-115 21-63 (82)
129 1rp3_A RNA polymerase sigma fa 28.5 85 0.0029 26.6 5.5 37 77-114 193-229 (239)
130 2e1c_A Putative HTH-type trans 28.3 67 0.0023 27.5 4.7 46 73-119 26-72 (171)
131 1c20_A DEAD ringer protein; DN 27.8 9.6 0.00033 31.8 -0.7 41 24-64 56-106 (128)
132 1xsv_A Hypothetical UPF0122 pr 27.7 1E+02 0.0035 24.6 5.5 40 74-114 28-67 (113)
133 2jpc_A SSRB; DNA binding prote 27.6 1.1E+02 0.0039 20.7 5.1 38 76-115 3-40 (61)
134 3mzy_A RNA polymerase sigma-H 26.9 80 0.0027 25.0 4.7 29 85-114 122-150 (164)
135 2eqy_A RBP2 like, jumonji, at 26.7 15 0.0005 30.6 0.2 42 23-64 45-95 (122)
136 2cyy_A Putative HTH-type trans 26.0 88 0.003 25.6 4.9 46 74-120 7-53 (151)
137 2k27_A Paired box protein PAX- 25.8 2.7E+02 0.0092 22.7 9.1 77 15-97 24-111 (159)
138 2of5_H Leucine-rich repeat and 24.9 77 0.0026 25.8 4.3 31 76-107 13-43 (118)
139 2o71_A Death domain-containing 24.8 87 0.003 25.7 4.6 29 78-107 26-54 (115)
140 3e7l_A Transcriptional regulat 24.7 1.1E+02 0.0038 21.7 4.7 33 73-106 18-50 (63)
141 1k78_A Paired box protein PAX5 24.2 2.1E+02 0.0071 23.0 6.9 99 12-116 28-146 (149)
142 2of5_A Death domain-containing 23.1 83 0.0028 25.8 4.2 29 78-107 26-54 (114)
143 2kk0_A AT-rich interactive dom 22.3 30 0.001 29.5 1.4 41 24-64 68-118 (145)
144 2q1z_A RPOE, ECF SIGE; ECF sig 22.2 38 0.0013 27.9 2.0 30 85-115 149-178 (184)
145 1ntc_A Protein (nitrogen regul 22.1 1.3E+02 0.0044 23.0 4.9 35 73-108 50-84 (91)
146 2rnj_A Response regulator prot 21.0 1E+02 0.0036 23.1 4.1 43 70-115 29-71 (91)
147 1p4w_A RCSB; solution structur 20.0 2.1E+02 0.0073 22.3 5.9 45 68-115 32-76 (99)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=7.3e-34 Score=233.98 Aligned_cols=105 Identities=44% Similarity=0.895 Sum_probs=99.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 017727 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRW 90 (367)
Q Consensus 11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kW 90 (367)
++++|+||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence 478999999999999999999998 68999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 91 SIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 91 skIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
+.||++|||||+++|++||+.++++++
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998864
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.7e-33 Score=232.36 Aligned_cols=103 Identities=33% Similarity=0.678 Sum_probs=99.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 017727 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSII 93 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskI 93 (367)
||+||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|+.|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I 78 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI 78 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence 689999999999999999998 69999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727 94 AAQLPGRTDNDIKNYWNTRLKKKLL 118 (367)
Q Consensus 94 Ak~LPGRT~~qcKnRW~~~Lkkkl~ 118 (367)
|++|||||+++|++||+.++++..+
T Consensus 79 a~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 79 SKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999888654
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=6e-33 Score=236.42 Aligned_cols=109 Identities=41% Similarity=0.858 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHh
Q 017727 7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISI 86 (367)
Q Consensus 7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~ 86 (367)
..+|++++|+||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++.+|
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 97 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 97 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999998 68999999998 999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 87 GSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 87 G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
|++|+.||++|||||+++|++||+.++++++
T Consensus 98 G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 98 GNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999998764
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=1e-32 Score=235.26 Aligned_cols=106 Identities=38% Similarity=0.693 Sum_probs=101.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIG 87 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G 87 (367)
.++..+||+||+|||++|+++|.+||. +|..||..|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999998 9999999998 9999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 88 SRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 88 ~kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
.+|+.||++|||||+++||+||+.++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988763
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=9e-33 Score=236.69 Aligned_cols=104 Identities=39% Similarity=0.833 Sum_probs=101.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 017727 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSII 93 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskI 93 (367)
||+||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 799999999999999999997 69999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 94 AAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 94 Ak~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
|++|||||+++|++||+++|++++..
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=8.3e-31 Score=230.38 Aligned_cols=108 Identities=43% Similarity=0.861 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIG 87 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G 87 (367)
..|.+++|+||+|||++|+++|.+||. .+|..||..|+ +|+++||+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 568999999999999999999999997 58999999998 9999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 88 SRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 88 ~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
++|+.||++|||||+++|++||+.++++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=7.3e-30 Score=224.36 Aligned_cols=104 Identities=33% Similarity=0.708 Sum_probs=61.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-C
Q 017727 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGS-R 89 (367)
Q Consensus 11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~-k 89 (367)
++++++||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~ 80 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKR 80 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCccc
Confidence 478999999999999999999998 69999999998 99999999999999999999999999999999999999996 7
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 90 WSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 90 WskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
|..||++|||||+.||++||+++|.+.
T Consensus 81 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 81 WSVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 999999999999999999999987653
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-21 Score=150.69 Aligned_cols=67 Identities=30% Similarity=0.661 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHH
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEED 76 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED 76 (367)
..+.+++|+||+|||++|+++|.+||. .+|..||..|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 457899999999999999999999997 69999999999 99999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.82 E-value=6.4e-21 Score=162.15 Aligned_cols=75 Identities=29% Similarity=0.624 Sum_probs=51.2
Q ss_pred ecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 41 LPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 41 IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
||+.|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|.+.
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence 788888 99999999999999999999999999999999999999996 7999999999999999999999987653
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.72 E-value=4e-18 Score=160.39 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=92.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC----CceeecccccCccCccccchhhcccccCCCC-----------------
Q 017727 9 KANVKKGPWSPEEDAKLKDYIEKYGTGG----NWIALPQKIGLKRCGKSCRLRWLNYLRPNIK----------------- 67 (367)
Q Consensus 9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~----nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ik----------------- 67 (367)
.+.++|++||+|||++|+++|++||... .|..||+.|+ +|++.|||.||+++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4578899999999999999999998721 2999999999 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 017727 68 ------------HGGFSEEEDNIICSLYIS-I--------------------------------GS-------------- 88 (367)
Q Consensus 68 ------------kg~WT~EED~~LleLv~~-~--------------------------------G~-------------- 88 (367)
+..||.+||-.|+..+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999998876 2 11
Q ss_pred -----------CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 89 -----------RWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 89 -----------kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
.|..||+.+|+||.+++|+||+..|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988765
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=6.1e-18 Score=133.22 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=47.3
Q ss_pred cchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727 54 CRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113 (367)
Q Consensus 54 CR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~L 113 (367)
.--||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 999999999998643
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.6e-17 Score=124.28 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=55.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 61 ~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
+|+|.+++++||+|||++|+++++.||.+|.+||+ |+|||+.|||+||+.+|++.+.+
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 79999999999999999999999999999999999 88999999999999999998764
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.65 E-value=2.8e-17 Score=140.80 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---CccCccccchhhccccc-----CCCCCC-CCCHHHHHH
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG---LKRCGKSCRLRWLNYLR-----PNIKHG-GFSEEEDNI 78 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L~-----P~ikkg-~WT~EED~~ 78 (367)
.++..++++||+|||+.|+++|++||. ++|..|+..+. .+|++.+|++||+++|+ |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 457889999999999999999999998 79999999852 38999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCCHHH
Q 017727 79 ICSLYISIGSRWSI 92 (367)
Q Consensus 79 LleLv~~~G~kWsk 92 (367)
|++++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1e-16 Score=120.03 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=52.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~ 118 (367)
+|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 6999999999999999999999999988654
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=2.4e-16 Score=122.44 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=55.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 62 LRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 62 L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
++|.+++++||+|||++|+++|.+||.+|..||++|||||++|||+||+.+++++++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987654
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=4.7e-17 Score=121.94 Aligned_cols=57 Identities=26% Similarity=0.625 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCC
Q 017727 9 KANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIK 67 (367)
Q Consensus 9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ik 67 (367)
.|.+++++||+|||++|+++|.+||. .+|..||..|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 47899999999999999999999997 59999999998 99999999999999999876
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=7.1e-17 Score=117.73 Aligned_cols=52 Identities=42% Similarity=0.944 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC
Q 017727 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN 65 (367)
Q Consensus 12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ 65 (367)
++||+||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 58999999999999999999998 68999999998 999999999999999984
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.63 E-value=1.4e-16 Score=136.62 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=73.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---CccCccccchhhcccc-----cCCCCCCCCCHHH-HHHH
Q 017727 9 KANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG---LKRCGKSCRLRWLNYL-----RPNIKHGGFSEEE-DNII 79 (367)
Q Consensus 9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L-----~P~ikkg~WT~EE-D~~L 79 (367)
+...++++||+|||+.|+++|++||. ++|..|++.+. .+|++.+|++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 45678999999999999999999998 79999998741 3899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 017727 80 CSLYISIGSR 89 (367)
Q Consensus 80 leLv~~~G~k 89 (367)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=6.8e-16 Score=112.36 Aligned_cols=50 Identities=30% Similarity=0.556 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 66 ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+++++||+|||++|+++|.+||. +|..||++|||||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 999999999999999999999999875
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=1.2e-16 Score=116.42 Aligned_cols=52 Identities=35% Similarity=0.752 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC
Q 017727 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN 65 (367)
Q Consensus 12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ 65 (367)
+++++||+|||++|+++|.+||. ++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998 69999999998 999999999999999984
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=2e-16 Score=121.89 Aligned_cols=64 Identities=23% Similarity=0.434 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccC-ccCccccchhhcccccCCCCCCCCC
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGL-KRCGKSCRLRWLNYLRPNIKHGGFS 72 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~-~Rs~kQCR~RW~n~L~P~ikkg~WT 72 (367)
.++..++++||+|||++|+++|++||. ++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 357789999999999999999999997 699999999975 8999999999999999999988764
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.3e-16 Score=118.26 Aligned_cols=57 Identities=25% Similarity=0.411 Sum_probs=53.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
.|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+++|++.+.+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4788999999999999999999999 79999999999999999999999999987753
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=1.3e-15 Score=111.07 Aligned_cols=50 Identities=32% Similarity=0.672 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 66 ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998865
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=1.8e-15 Score=116.47 Aligned_cols=59 Identities=29% Similarity=0.311 Sum_probs=54.4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhHhhh
Q 017727 61 YLRPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 61 ~L~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LP--GRT~~qcKnRW~~~Lkkkl~~ 119 (367)
...+..++++||+|||++|+++|.+|| ++|+.||+.|+ |||+.|||+||+++|++.+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 356778999999999999999999999 69999999999 999999999999999997754
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=2.4e-15 Score=110.22 Aligned_cols=50 Identities=32% Similarity=0.370 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhH
Q 017727 67 KHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G-~kWskIAk~LP--GRT~~qcKnRW~~~Lkkk 116 (367)
++++||+|||++|+++|.+|| ++|+.||+.|+ |||+.||++||.++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 579999999999999999999 69999999999 999999999999998753
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=3.2e-15 Score=112.41 Aligned_cols=53 Identities=11% Similarity=0.255 Sum_probs=49.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.+.+.+++||+|||++|+++|.+|| ++|.+||++|||||+.|||+||.++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999998764
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=1.1e-14 Score=111.58 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhHh
Q 017727 66 IKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 66 ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LP--GRT~~qcKnRW~~~Lkkkl 117 (367)
.++++||+|||++|+++|.+|| ++|+.||+.+| |||+.|||+||+++++..|
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999999999 59999999976 9999999999999998754
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=1.6e-15 Score=116.21 Aligned_cols=56 Identities=30% Similarity=0.568 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc-CccCccccchhhcccccCCCC
Q 017727 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG-LKRCGKSCRLRWLNYLRPNIK 67 (367)
Q Consensus 11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg-~~Rs~kQCR~RW~n~L~P~ik 67 (367)
..+|++||+|||++|+++|++||. ++|..||+.++ .+|++.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 357899999999999999999998 69999999864 389999999999999998764
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.2e-15 Score=114.90 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=53.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIG------SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G------~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||+++|++.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999 79999999999999999999999999886643
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.4e-15 Score=113.07 Aligned_cols=55 Identities=16% Similarity=0.513 Sum_probs=51.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC
Q 017727 9 KANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN 65 (367)
Q Consensus 9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ 65 (367)
.+.+++++||+|||++|+++|++||. .+|..||+.|+ +|+++||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 36899999999999999999999997 59999999999 999999999999999764
No 31
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-15 Score=116.67 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCC
Q 017727 7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGG 70 (367)
Q Consensus 7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~ 70 (367)
...|.+++++||+|||++|+++|+.||. +|..||+ ++ +|+++||+.||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 3578999999999999999999999998 9999999 76 79999999999999999877653
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.49 E-value=3.5e-14 Score=106.29 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 017727 64 PNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP-GRTDNDIKNYWNTRL 113 (367)
Q Consensus 64 P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LP-GRT~~qcKnRW~~~L 113 (367)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 89999999999 999999999998764
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.6e-15 Score=116.27 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCC----CCceeecccccCccCccccchhhcccccCCCCCCC
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTG----GNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGG 70 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~----~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~ 70 (367)
.+|.+++++||+|||++|+++|.+||.. .+|..||+.|+ +|+++||+.||.++|.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 3789999999999999999999999941 38999999999 99999999999999999887764
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.47 E-value=9.2e-15 Score=107.13 Aligned_cols=50 Identities=30% Similarity=0.587 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccC-ccCccccchhhccccc
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGL-KRCGKSCRLRWLNYLR 63 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~-~Rs~kQCR~RW~n~L~ 63 (367)
++++||+|||++|+++|++||. ++|..||..++. +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 6899999999999999999997 699999999975 6999999999999875
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.19 E-value=4.7e-15 Score=120.05 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=53.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 61 ~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
.+.|.+++++||+|||++|+++|..||.+|..||++|||||++||++||++++++.-
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 467899999999999999999999999999999999999999999999999988753
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.5e-14 Score=108.28 Aligned_cols=52 Identities=27% Similarity=0.534 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc
Q 017727 10 ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL 62 (367)
Q Consensus 10 p~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 62 (367)
..+.+++||+|||++|+++|++||. ++|..||+.|+.+|+++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999997 699999999987899999999999875
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=1.6e-14 Score=112.13 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCC
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKH 68 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikk 68 (367)
..|.+++++||+|||++|+++|.+||. +|..||..|+ +|++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999998 9999999999 999999999999999887666
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.38 E-value=2e-13 Score=114.34 Aligned_cols=83 Identities=19% Similarity=0.164 Sum_probs=68.7
Q ss_pred CccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---CccCccccchhhcccc-----cCCCCCCCCCHHH
Q 017727 4 APCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG---LKRCGKSCRLRWLNYL-----RPNIKHGGFSEEE 75 (367)
Q Consensus 4 ~pc~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L-----~P~ikkg~WT~EE 75 (367)
...-.+...++++||+|||+.|+++|++||. ++|..|++.+. .+||+.+|++||++++ +|.+++|.-+++|
T Consensus 3 ~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~ 81 (105)
T 2aje_A 3 HMLEDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQE 81 (105)
T ss_dssp ------CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCH
T ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHH
Confidence 3445668899999999999999999999998 79999999762 3899999999999998 6999999988888
Q ss_pred HHH-HHHHHHHhC
Q 017727 76 DNI-ICSLYISIG 87 (367)
Q Consensus 76 D~~-LleLv~~~G 87 (367)
-.. +++|+..+|
T Consensus 82 ~l~rv~~~~~~~~ 94 (105)
T 2aje_A 82 LLNRVLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 765 888877665
No 39
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=4.9e-13 Score=105.15 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=47.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 64 PNIKHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 64 P~ikkg~WT~EED~~LleLv~~~G----~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+.+.+++||.+||++|++++..|| .+|.+||++|||||+.||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 467889999999999999999999 6899999999999999999999987653
No 40
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.37 E-value=5.7e-13 Score=113.18 Aligned_cols=55 Identities=27% Similarity=0.532 Sum_probs=50.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
.+..++|+||+|||++|+++|.+||.+|..||+.|||||+.||+.||.++|.+.+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~ 60 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI 60 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc
Confidence 4578899999999999999999999999999999999999999999999987654
No 41
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.36 E-value=5.4e-13 Score=109.34 Aligned_cols=51 Identities=31% Similarity=0.666 Sum_probs=47.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 65 NIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 65 ~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
++++|+||+|||++|+++|.+||. +|..||+.|||||+.||+.||.++|.+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCC
Confidence 368999999999999999999997 799999999999999999999998754
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.33 E-value=3.4e-13 Score=106.10 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=48.4
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCC
Q 017727 6 CCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKH 68 (367)
Q Consensus 6 c~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikk 68 (367)
-...|.+++|+||+|||++|+++|++||. +|..||+.| +|++.||+.||.. |....+.
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 35679999999999999999999999998 699999999 7999999999985 5444443
No 43
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.33 E-value=3.3e-13 Score=115.21 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHh
Q 017727 7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISI 86 (367)
Q Consensus 7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~ 86 (367)
...|.+++|+||+|||++|+++|.+||. +|..||..|+ +|++.+|+.||.++|++.+..++|+.+- +......
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~k 119 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSK 119 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhh
Confidence 3568999999999999999999999997 8999999998 9999999999999999999999988653 1111223
Q ss_pred CCCHHHHHhhC
Q 017727 87 GSRWSIIAAQL 97 (367)
Q Consensus 87 G~kWskIAk~L 97 (367)
+.+|+.|++.|
T Consensus 120 k~~~~~i~k~~ 130 (131)
T 3zqc_A 120 KRKAADVPKKL 130 (131)
T ss_dssp -----------
T ss_pred hhhhhhcchhc
Confidence 45688887765
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=7.8e-13 Score=106.36 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeccc----ccCccCccccchhhcccc-----cCCCCCC-CCCHHHHHHHHHHHH
Q 017727 15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQK----IGLKRCGKSCRLRWLNYL-----RPNIKHG-GFSEEEDNIICSLYI 84 (367)
Q Consensus 15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~----lg~~Rs~kQCR~RW~n~L-----~P~ikkg-~WT~EED~~LleLv~ 84 (367)
++||+|||+.|+++|++||. ++|..|++. ++ +||+.+|++||++++ +|.+++| +..++...+++.|++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998 799999985 66 999999999999988 6776665 677777788988876
Q ss_pred H
Q 017727 85 S 85 (367)
Q Consensus 85 ~ 85 (367)
.
T Consensus 79 ~ 79 (83)
T 2ckx_A 79 Y 79 (83)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=103.81 Aligned_cols=48 Identities=10% Similarity=0.172 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727 65 NIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTR 112 (367)
Q Consensus 65 ~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~ 112 (367)
...+++||+|||++|++++.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999754
No 46
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.28 E-value=2.8e-12 Score=105.97 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727 68 HGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl 117 (367)
+|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i 51 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPAL 51 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccc
Confidence 589999999999999999996 89999999999999999999999887643
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=103.26 Aligned_cols=53 Identities=23% Similarity=0.516 Sum_probs=49.3
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727 6 CCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY 61 (367)
Q Consensus 6 c~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~ 61 (367)
.+.+....+++||+|||++|+++|++||. +|..||+.|+ +|++.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 45677788999999999999999999994 9999999999 89999999999998
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=9.5e-12 Score=100.01 Aligned_cols=49 Identities=24% Similarity=0.393 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHh
Q 017727 69 GGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 69 g~WT~EED~~LleLv~~~G~-kWskIAk~----LPGRT~~qcKnRW~~~Lkkkl 117 (367)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999997 99999996 899999999999999998654
No 49
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=3.6e-12 Score=120.06 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727 64 PNIKHGGFSEEEDNIICSLYISIGSR------WSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118 (367)
Q Consensus 64 P~ikkg~WT~EED~~LleLv~~~G~k------WskIAk~LPGRT~~qcKnRW~~~Lkkkl~ 118 (367)
+.+++++||+|||++|+++|+++|++ |..||++|||||+++||+||+++|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45788999999999999999999985 99999999999999999999999999876
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.86 E-value=1e-12 Score=106.34 Aligned_cols=55 Identities=24% Similarity=0.489 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccC
Q 017727 7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64 (367)
Q Consensus 7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P 64 (367)
...|.+++|+||+|||++|+++|.+||. +|..||..|+ +|++.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 5568999999999999999999999998 8999999999 99999999999998863
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.21 E-value=1.3e-11 Score=105.62 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=50.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhH
Q 017727 62 LRPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 62 L~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~----LPGRT~~qcKnRW~~~Lkkk 116 (367)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 556778999999999999999999997 99999998 49999999999999999863
No 52
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.21 E-value=1.8e-11 Score=93.67 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHH---hhCCCCCHHHHHHHHHHHhhh
Q 017727 67 KHGGFSEEEDNIICSLYISIGSRWSIIA---AQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G~kWskIA---k~LPGRT~~qcKnRW~~~Lkk 115 (367)
++.+||+|||+.|+++|++||.+|+.|+ ..+++||..++|+||+++.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 567999999999999998875
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.21 E-value=2e-11 Score=102.21 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=48.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQL----PGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~L----PGRT~~qcKnRW~~~Lkkk 116 (367)
.+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34568899999999999999999997 999999965 8999999999999999864
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.18 E-value=2.8e-11 Score=99.20 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 67 KHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G----~kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
.+++||.|||++|++++..|| ++|.+||++|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999988664
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.16 E-value=6.7e-12 Score=98.70 Aligned_cols=56 Identities=16% Similarity=0.443 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCC--CCceeecccccCccCccccchhhccccc
Q 017727 7 CDKANVKKGPWSPEEDAKLKDYIEKYGTG--GNWIALPQKIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~--~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 63 (367)
-+++...+++||+|||.+|+.+|.+||.. .+|..||+.|+ +|+.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 46678889999999999999999999931 38999999999 9999999999998764
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.13 E-value=7.5e-11 Score=101.12 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=48.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhH
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~----LPGRT~~qcKnRW~~~Lkkk 116 (367)
....++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 33457899999999999999999997 99999997 49999999999999999764
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=8.8e-10 Score=83.16 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..++||+||++++++++..||.+|..||..||+||..+|+.+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.8e-09 Score=88.72 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=59.7
Q ss_pred cccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhHhhhh
Q 017727 52 KSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQL-----PGRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 52 kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~L-----PGRT~~qcKnRW~~~Lkkkl~~r 120 (367)
.=+.++|.++|.+ ++||.||+..|++|+++||-+|..|+..+ ++||..++|+||..+.++-+..+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4578999999976 89999999999999999999999999999 58999999999999998877655
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.82 E-value=5.9e-10 Score=91.35 Aligned_cols=49 Identities=14% Similarity=0.410 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhcccc
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWLNYL 62 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 62 (367)
.+++||+|||.+|++++.+||. ...|..||..|+ +|+.++|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3678999999999999999984 147999999999 999999999998864
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.80 E-value=5.9e-09 Score=81.62 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 65 NIKHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 65 ~ikkg~WT~EED~~LleLv~~~G----~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..+.+.||.|||++|.+++++|+ .+|.+||++| |||..+|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 5899999998 99999999999988655
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.65 E-value=2.9e-08 Score=92.96 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..++||+||++++++++.+||++|..||+.|++||..|||++|++..++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999987765
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2e-08 Score=75.68 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727 7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY 61 (367)
Q Consensus 7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~ 61 (367)
.++.....++||+||++++.+++.+||. +|..||..|+ +|+..+|+.+|...
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 4556667899999999999999999996 8999999999 99999999998654
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.58 E-value=1.5e-08 Score=77.54 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeecc---cccCccCccccchhhccccc
Q 017727 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQ---KIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~---~lg~~Rs~kQCR~RW~n~L~ 63 (367)
..+.+||+|||+.|++.|++||. +|..|+. .+. +|+...+.+||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 47889999999999999999997 9999994 555 9999999999998654
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.53 E-value=1.1e-07 Score=74.85 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 67 KHGGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G~----kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
....||.+|+++|.+++..|+. +|.+||..|||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999984 799999999999999999999877443
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.38 E-value=2.4e-07 Score=94.91 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 69 GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 69 g~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..||+||-+++++++.+||..|..||+.++.||..|||++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999976444
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.36 E-value=3.8e-07 Score=68.73 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-CHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 017727 68 HGGFSEEEDNIICSLYISI--------GS-RWSIIAA-QLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~--------G~-kWskIAk-~LPGRT~~qcKnRW~~~Lk 114 (367)
+.+||+|||.+|++.|.++ |+ -|..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 44 3999999 7999999999999988764
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.33 E-value=8.7e-08 Score=74.99 Aligned_cols=52 Identities=13% Similarity=0.287 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhccccc
Q 017727 10 ANVKKGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 10 p~lKKG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 63 (367)
...+++.||.|||.+|.+++.+|+. ...|.+||..+ +|+.++|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 3456789999999999999999974 24799999997 5999999999987654
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.19 E-value=3.1e-07 Score=69.23 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCCceeecc-cccCccCccccchhhccccc
Q 017727 14 KGPWSPEEDAKLKDYIEKY--------GTGGNWIALPQ-KIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~ky--------G~~~nW~~IA~-~lg~~Rs~kQCR~RW~n~L~ 63 (367)
|.+||+|||+.|+++|.+| |. .-|..+++ .++ .++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 44 46999999 677 9999999999999875
No 69
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=8.9e-06 Score=61.67 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=44.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhh-CCCCCHHHHHHHHHH
Q 017727 63 RPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQ-LPGRTDNDIKNYWNT 111 (367)
Q Consensus 63 ~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~-LPGRT~~qcKnRW~~ 111 (367)
.|.++...||+||-++..+++.+||..|..|+++ ||+||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 4677888999999999999999999999999995 899999999988864
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.06 E-value=8.4e-07 Score=69.85 Aligned_cols=49 Identities=20% Similarity=0.468 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhccccc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 63 (367)
...||.||+.+|.+++..|+. ...|..||..+| +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 457999999999999999974 247999999999 8999999999988754
No 71
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.03 E-value=1.6e-06 Score=81.24 Aligned_cols=51 Identities=25% Similarity=0.446 Sum_probs=46.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc
Q 017727 10 ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 10 p~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 63 (367)
.....++||.||++++++++.+||. +|..||+.|+ +|+..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3356789999999999999999997 8999999999 9999999999988764
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.98 E-value=9.1e-06 Score=66.52 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 69 GGFSEEEDNIICSLYISIGS---RWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 69 g~WT~EED~~LleLv~~~G~---kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
--||.|||+.||..+++-|. .|+.||+.|.+|+.+||++||+.+++-.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 36999999999999999996 8999999999999999999999988753
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.90 E-value=1.7e-06 Score=68.29 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 017727 68 HGGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWN 110 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~----kWskIAk~LPGRT~~qcKnRW~ 110 (367)
...||.+|+++|..+++.|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 8999999999999999999874
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.90 E-value=2.5e-05 Score=75.94 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccch-------hhcc---------------------------
Q 017727 15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRL-------RWLN--------------------------- 60 (367)
Q Consensus 15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~-------RW~n--------------------------- 60 (367)
+.||..+...++.++.+||. .+|..||..|+ +++...++. ||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999998 79999999998 888766533 2200
Q ss_pred ----------------cccCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHHH
Q 017727 61 ----------------YLRPNIKHGGFSEEEDNIICSLYISIGS----RWSIIAA------------QLPGRTDNDIKNY 108 (367)
Q Consensus 61 ----------------~L~P~ikkg~WT~EED~~LleLv~~~G~----kWskIAk------------~LPGRT~~qcKnR 108 (367)
+.-+..+...||++||+.|+-++.+||- .|..|.. .+..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 0012234568999999999999999994 6999973 4467999999999
Q ss_pred HHHHhhh
Q 017727 109 WNTRLKK 115 (367)
Q Consensus 109 W~~~Lkk 115 (367)
.+++++-
T Consensus 269 c~tLi~~ 275 (304)
T 1ofc_X 269 CNTLITL 275 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.84 E-value=3.7e-05 Score=63.08 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=52.9
Q ss_pred hhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhHhhhhh
Q 017727 56 LRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLP-----GRTDNDIKNYWNTRLKKKLLGRR 121 (367)
Q Consensus 56 ~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LP-----GRT~~qcKnRW~~~Lkkkl~~rr 121 (367)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++-+..+.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 44556664 3689999999999999999999999999873 79999999999999988776543
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.99 E-value=3.1e-06 Score=65.86 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 70 GFSEEEDNIICSLYISIGS---RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G~---kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
-||.|||+.|+..+++-|. .|+.||+.| +||++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 899999999 99999999999988764
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.61 E-value=8.9e-05 Score=60.46 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHH
Q 017727 68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~ 111 (367)
...||+||.++..+++..||.+|..||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998864
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.57 E-value=0.00016 Score=55.98 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 017727 68 HGGFSEEEDNIICSLYISIGSRWSIIAA-QLPGRTDNDIKNYWNT 111 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~kWskIAk-~LPGRT~~qcKnRW~~ 111 (367)
...||+||-++..+++..||..|..|++ .||+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5999999999999873
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.54 E-value=1.4e-05 Score=63.11 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWL 59 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~ 59 (367)
.+.||.||+.+|..++.+|+. ...|.+||..+| +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 457999999999999999965 347999999999 999999999985
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00014 Score=55.04 Aligned_cols=50 Identities=10% Similarity=0.222 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecc-cccCccCccccchhhcc
Q 017727 8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQ-KIGLKRCGKSCRLRWLN 60 (367)
Q Consensus 8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~-~lg~~Rs~kQCR~RW~n 60 (367)
-.|.++...||+||-.+..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 357788899999999999999999998 8999998 588 9999999887643
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.22 E-value=9e-05 Score=60.78 Aligned_cols=50 Identities=14% Similarity=0.365 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc----CccCccccchhhccccc
Q 017727 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG----LKRCGKSCRLRWLNYLR 63 (367)
Q Consensus 12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg----~~Rs~kQCR~RW~n~L~ 63 (367)
++..+||.||+..|++|+++||. .|..|+..+. .+|+...++.||..+.+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 34489999999999999999998 8999999993 37999999999987543
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.08 E-value=0.00054 Score=54.08 Aligned_cols=49 Identities=14% Similarity=0.339 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------CHHHHHhhCC----CCCHHHHHHHHHHHhhhH
Q 017727 68 HGGFSEEEDNIICSLYISIGS----------RWSIIAAQLP----GRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~----------kWskIAk~LP----GRT~~qcKnRW~~~Lkkk 116 (367)
...||.+|-..||++...+.. .|..||..|. .||+.||+++|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999976321 5999999873 699999999999987763
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.00 E-value=0.00024 Score=72.90 Aligned_cols=48 Identities=25% Similarity=0.462 Sum_probs=43.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY 61 (367)
Q Consensus 11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~ 61 (367)
.....+||.||-+++++++.+||. +|..||+.++ +|+..||+..|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345789999999999999999997 9999999999 99999999998764
No 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.73 E-value=0.0045 Score=61.73 Aligned_cols=100 Identities=23% Similarity=0.339 Sum_probs=75.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccch-------hhcc---------------------------
Q 017727 15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRL-------RWLN--------------------------- 60 (367)
Q Consensus 15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~-------RW~n--------------------------- 60 (367)
+.||.-+=..++.++.+||. .+-..||..|+.+++...++. ||..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998 789999999953566544332 1100
Q ss_pred -------c------c----cCC-CCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhh------------CCCCCHHHHH
Q 017727 61 -------Y------L----RPN-IKHGGFSEEEDNIICSLYISIG----SRWSIIAAQ------------LPGRTDNDIK 106 (367)
Q Consensus 61 -------~------L----~P~-ikkg~WT~EED~~LleLv~~~G----~kWskIAk~------------LPGRT~~qcK 106 (367)
+ | .+. -+...||++||..||-++.+|| +.|.+|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 1 111 1345799999999999999999 469999543 3569999999
Q ss_pred HHHHHHhhh
Q 017727 107 NYWNTRLKK 115 (367)
Q Consensus 107 nRW~~~Lkk 115 (367)
.|...+++-
T Consensus 283 rRc~tLi~~ 291 (374)
T 2y9y_A 283 RRGNTLLQC 291 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999975
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.55 E-value=0.0056 Score=55.03 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHHHHHh--hC------------CCCCHHHHHHHHHHHhh
Q 017727 70 GFSEEEDNIICSLYISIG-SRWSIIAA--QL------------PGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G-~kWskIAk--~L------------PGRT~~qcKnRW~~~Lk 114 (367)
.||.+||..|+..+.+|| ++|..|-. .| ..+++..+..|-..+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 599999999999999999 89999975 21 12567789999876665
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.35 E-value=0.0011 Score=53.86 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWL 59 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~ 59 (367)
...||+||.++..+....||. +|..|+..|+ +|+..+|.+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHh
Confidence 467999999999999999997 8999999998 999999988764
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.24 E-value=0.0016 Score=50.21 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecc-cccCccCccccchhhcc
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQ-KIGLKRCGKSCRLRWLN 60 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~-~lg~~Rs~kQCR~RW~n 60 (367)
....||+||-.+..+++.+||. +|..|++ .|+ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 4567999999999999999998 8999999 588 9999999887653
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.18 E-value=0.00048 Score=54.38 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--------CCCceeeccccc---CccCccccchhhcccc
Q 017727 13 KKGPWSPEEDAKLKDYIEKYGT--------GGNWIALPQKIG---LKRCGKSCRLRWLNYL 62 (367)
Q Consensus 13 KKG~WT~EEDekL~~lV~kyG~--------~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L 62 (367)
+...||.+|...|+.+....-. ..-|..||..|. -.|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999975311 125999999874 5799999999998754
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.11 E-value=0.0019 Score=52.93 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CCCceeecccccCccCccccchhhcc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGT-GGNWIALPQKIGLKRCGKSCRLRWLN 60 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~-~~nW~~IA~~lg~~Rs~kQCR~RW~n 60 (367)
---||.|||..|+...++-|. ...|..||+.|+ +|+..|+.+|++.
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 345999999999999999986 458999999998 9999999999965
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.85 E-value=0.0014 Score=51.03 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CCCceeecccccCccCccccchhhcccc
Q 017727 14 KGPWSPEEDAKLKDYIEKYGT-GGNWIALPQKIGLKRCGKSCRLRWLNYL 62 (367)
Q Consensus 14 KG~WT~EEDekL~~lV~kyG~-~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 62 (367)
--.||.|||..|+..+++-|. ...|..||..| +|++.|+..|+...+
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLM 61 (70)
Confidence 346999999999999999887 34799999988 699999999998754
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.09 E-value=0.017 Score=47.26 Aligned_cols=49 Identities=14% Similarity=0.377 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc----CccCccccchhhcccc
Q 017727 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG----LKRCGKSCRLRWLNYL 62 (367)
Q Consensus 12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg----~~Rs~kQCR~RW~n~L 62 (367)
++...||.||...|.+|+++|.- .|..|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999997 8999999874 2688888999987754
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.74 E-value=0.32 Score=37.20 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHHHHHHH
Q 017727 66 IKHGGFSEEEDNIICSLYISIGSR---WSIIAAQL--PGRTDNDIKNYWNTR 112 (367)
Q Consensus 66 ikkg~WT~EED~~LleLv~~~G~k---WskIAk~L--PGRT~~qcKnRW~~~ 112 (367)
..+-.||+|..+..++++.++|.. +..|-+.| +|.|..+|+.+...+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 356689999999999999999964 88999886 799999999987653
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.21 E-value=0.19 Score=44.87 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhhH
Q 017727 66 IKHGGFSEEEDNIICSLYISIG---SRWSIIAAQ--LPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 66 ikkg~WT~EED~~LleLv~~~G---~kWskIAk~--LPGRT~~qcKnRW~~~Lkkk 116 (367)
-....||+.|-..|+.++.+|| .+|..|+.. |.+||...|+..+..++..-
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3557899999999999999999 589999965 78999999998887766543
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.12 E-value=0.23 Score=48.24 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 68 HGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.+.||..+....+.++.+||. .|..||..|+|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 457999999999999999996 899999999999999998877666643
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=84.79 E-value=0.51 Score=36.05 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=36.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC-CCceeeccccc-CccCccccchhhcc
Q 017727 11 NVKKGPWSPEEDAKLKDYIEKYGTG-GNWIALPQKIG-LKRCGKSCRLRWLN 60 (367)
Q Consensus 11 ~lKKG~WT~EEDekL~~lV~kyG~~-~nW~~IA~~lg-~~Rs~kQCR~RW~n 60 (367)
...+-.||+|..++.+++|++.|.+ ..+..|.+.|+ .+.+..++.-|.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3467789999999999999999952 23677877776 24566666655443
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=82.54 E-value=0.99 Score=43.07 Aligned_cols=29 Identities=38% Similarity=0.723 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeccc
Q 017727 15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQK 44 (367)
Q Consensus 15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~ 44 (367)
..|+.+||..|+..|-+||. ++|..|-.-
T Consensus 169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCT-TCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcC-CcHHHHhcC
Confidence 45999999999999999999 899998643
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=76.76 E-value=5.5 Score=37.91 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHh--hCCCCCHHHHHHHHHHHhhh
Q 017727 68 HGGFSEEEDNIICSLYISIG---SRWSIIAA--QLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G---~kWskIAk--~LPGRT~~qcKnRW~~~Lkk 115 (367)
+++||+.|-+.|++.+.+|| .+|..|+. .|+.|+...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 48999985 47999999999988877653
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=62.01 E-value=12 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 74 EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+.+..++.++...|-.+.+||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566667667889999999999 88999999877655443
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=57.58 E-value=8.7 Score=31.61 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 78 IICSLYISIGS--------RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.|..+|.+.|+ .|..||..|.--.+..+|..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 47778888885 799999998444478999999988865
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=57.34 E-value=16 Score=26.58 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 74 EEDNIICSLYIS----IGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 74 EED~~LleLv~~----~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+.+..++.+..- .|-.+.+||..| |-|...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344555555554 577999999999 99999999877665544
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.54 E-value=23 Score=28.41 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhh
Q 017727 78 IICSLYISIGS--------RWSIIAAQLPGRT----DNDIKNYWNTRLKK 115 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LPGRT----~~qcKnRW~~~Lkk 115 (367)
.|..+|.+.|+ .|.+||..|.--. ...+|..|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 57777778875 7999999993322 56889999888765
No 102
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=54.60 E-value=63 Score=26.94 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=50.7
Q ss_pred CCCCCCCHHHH--HHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-
Q 017727 12 VKKGPWSPEED--AKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGS- 88 (367)
Q Consensus 12 lKKG~WT~EED--ekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~- 88 (367)
.=+.+|.+.+. +.|.+..+..|. ....++.. + +|. |+ =-+|..+|.+.|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rGt--pl~~~P~i-~-gk~-----------lD------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQGI--TMDELPLI-G-GCE-----------LD------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTC--CCSSCCEE-T-TEE-----------CC------------HHHHHHHHHHTTSH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcCC--CCCCCCcC-C-CEe-----------cc------------HHHHHHHHHHcCcH
Confidence 34567988775 457777777787 45555422 2 221 11 1357788888885
Q ss_pred -------CHHHHHhhC--CCC---CHHHHHHHHHHHhhh
Q 017727 89 -------RWSIIAAQL--PGR---TDNDIKNYWNTRLKK 115 (367)
Q Consensus 89 -------kWskIAk~L--PGR---T~~qcKnRW~~~Lkk 115 (367)
.|.+||..| |.- ....+|..|..+|-.
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 799999998 322 256889999887765
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=53.39 E-value=20 Score=29.45 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=29.7
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhhH
Q 017727 78 IICSLYISIGS--------RWSIIAAQLPGRT----DNDIKNYWNTRLKKK 116 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LPGRT----~~qcKnRW~~~Lkkk 116 (367)
+|..+|.+.|+ .|.+|+..|.--. ...+|..|..+|-.-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57778888885 7999999983222 568899999888653
No 104
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=52.22 E-value=17 Score=26.09 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=29.6
Q ss_pred HHHHHHHHHH----HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 75 EDNIICSLYI----SIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 75 ED~~LleLv~----~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.+..++.+.. ..|-.+.+||..| |-|...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4445555544 3477999999999 99999999887766544
No 105
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.58 E-value=27 Score=29.00 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhhHh
Q 017727 78 IICSLYISIGS--------RWSIIAAQLPGRT----DNDIKNYWNTRLKKKL 117 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LPGRT----~~qcKnRW~~~Lkkkl 117 (367)
+|..+|.+.|+ .|.+||..|.--+ ...+|..|..+|..--
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 57777888885 7999999983322 5688999998887643
No 106
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=49.43 E-value=5.7 Score=33.43 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCC------CCCceeecccccCccCc----cccchhhcccccCCCCCCCCCHHHHHHHHHHHH
Q 017727 23 AKLKDYIEKYGT------GGNWIALPQKIGLKRCG----KSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYI 84 (367)
Q Consensus 23 ekL~~lV~kyG~------~~nW~~IA~~lg~~Rs~----kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~ 84 (367)
-+|..+|.+.|- ...|..||..|+...+. ...+..|.++|.|-- .++++|-..|.+-|.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 368888888873 35899999999855433 357888999987632 378888888876654
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.14 E-value=27 Score=28.94 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCC--C--HHHHHHHHHHHhhhH
Q 017727 78 IICSLYISIGS--------RWSIIAAQLPGR--T--DNDIKNYWNTRLKKK 116 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LPGR--T--~~qcKnRW~~~Lkkk 116 (367)
+|..+|.+.|+ +|.+|+..|.-- + ...+|..|..+|-.-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 57777888885 799999998322 1 468899998888664
No 108
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=47.81 E-value=15 Score=30.78 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727 78 IICSLYISIGS--------RWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LPGRT~~qcKnRW~~~Lkkk 116 (367)
.|..+|.+.|+ .|.+|+..|.--.+..+|..|..+|-+-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 46667777775 6999999984444899999999988764
No 109
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=46.38 E-value=1e+02 Score=24.10 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc------CCCCCCCCCHHHHHHHHHHHHHhCCC
Q 017727 16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR------PNIKHGGFSEEEDNIICSLYISIGSR 89 (367)
Q Consensus 16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~------P~ikkg~WT~EED~~LleLv~~~G~k 89 (367)
..|.++-..++.++. -|. .-..||+.++. +...++ ||..... ..-.....+++++..|+.+...-+-.
T Consensus 6 ~~s~~~r~~i~~~~~-~G~--s~~~ia~~lgi--s~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 6 ALSDTERAQLDVMKL-LNV--SLHEMSRKISR--SRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCHHHHHHHHHHHH-TTC--CHHHHHHHHTC--CHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred cCCHHHHHHHHHHHH-cCC--CHHHHHHHHCc--CHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 478888888877764 465 77899999873 333332 3322211 11122357888888888873322235
Q ss_pred HHHHHhhCCC--CCHHHHHHHH
Q 017727 90 WSIIAAQLPG--RTDNDIKNYW 109 (367)
Q Consensus 90 WskIAk~LPG--RT~~qcKnRW 109 (367)
=.+|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 57888888 4 5666665443
No 110
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=45.90 E-value=26 Score=29.17 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCC--------CHHHHHhhC--CCC---CHHHHHHHHHHHhhhHh
Q 017727 77 NIICSLYISIGS--------RWSIIAAQL--PGR---TDNDIKNYWNTRLKKKL 117 (367)
Q Consensus 77 ~~LleLv~~~G~--------kWskIAk~L--PGR---T~~qcKnRW~~~Lkkkl 117 (367)
-.|..+|.+.|+ .|.+||..| |.. ....+|..|..+|..--
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 357778888885 799999998 222 26789999998887643
No 111
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=45.47 E-value=36 Score=33.90 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHHHHHHHHhh
Q 017727 68 HGGFSEEEDNIICSLYISIGS-RWSIIAAQLP-GRTDNDIKNYWNTRLK 114 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~-kWskIAk~LP-GRT~~qcKnRW~~~Lk 114 (367)
.+.||.-+=..++.++.+||. .-..||..|. |+|...|+.+......
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 357999999999999999996 6999999997 9999999965554443
No 112
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.90 E-value=32 Score=26.08 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 74 EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+.++.++.++...|-.-.+||+.| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445666677667788999999999 89999999887665443
No 113
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.46 E-value=18 Score=30.53 Aligned_cols=45 Identities=9% Similarity=0.021 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 74 EEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 74 EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
+-|..|+.+..+-|. .|.+||+.+ |-|...|+.|++.+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 457888888877764 899999999 999999999999888877654
No 114
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=42.24 E-value=16 Score=32.74 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=19.2
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCC
Q 017727 10 ANVKKGPWSPEEDAKLK--------DYIEKYGT 34 (367)
Q Consensus 10 p~lKKG~WT~EEDekL~--------~lV~kyG~ 34 (367)
|.-.+|-||+|+|+.|. ++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 34567889999999876 57778874
No 115
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=41.84 E-value=6 Score=32.61 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=30.7
Q ss_pred HHHHHHHHhCC------CCCceeecccccCccCccccchhhcccccC
Q 017727 24 KLKDYIEKYGT------GGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64 (367)
Q Consensus 24 kL~~lV~kyG~------~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P 64 (367)
+|..+|.+.|- ...|..||..|+... +..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57778887763 348999999998444 77888888888765
No 116
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=39.82 E-value=41 Score=28.73 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC--------CHHHHHhhC--CCC---CHHHHHHHHHHHhhhH
Q 017727 78 IICSLYISIGS--------RWSIIAAQL--PGR---TDNDIKNYWNTRLKKK 116 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~L--PGR---T~~qcKnRW~~~Lkkk 116 (367)
.|..+|.+.|+ .|.+|+..| |.. ....+|..|..+|-.-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 57778888885 799999998 322 2578999999888664
No 117
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=38.64 E-value=19 Score=28.24 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=26.9
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCC---C-CHHHHHHHHHHHhhh
Q 017727 78 IICSLYISIGS--------RWSIIAAQLPG---R-TDNDIKNYWNTRLKK 115 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LPG---R-T~~qcKnRW~~~Lkk 115 (367)
.|..+|.+.|+ .|.+|+..|.- - ....+|..|..+|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 46777777774 79999999732 1 256788888776654
No 118
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.64 E-value=78 Score=22.66 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 71 FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 71 WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+|+.|-+ ++.++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4454444 44554 6778999999999 88999999877665544
No 119
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.44 E-value=57 Score=27.01 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=23.9
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..|-...+||..| |-+...|+.+....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 89999999887665543
No 120
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.39 E-value=54 Score=24.68 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 75 EDNIICSLYIS----IGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 75 ED~~LleLv~~----~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.++.++.+..- .|-.+.+||..| |-|...|+.+-...+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 44555555544 567999999999 99999999876655443
No 121
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=32.93 E-value=69 Score=25.69 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 72 SEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 72 T~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888899999999999999 777776654
No 122
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=32.65 E-value=9.5 Score=31.47 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCC------CCCceeecccccCccC---ccccchhhcccccC
Q 017727 23 AKLKDYIEKYGT------GGNWIALPQKIGLKRC---GKSCRLRWLNYLRP 64 (367)
Q Consensus 23 ekL~~lV~kyG~------~~nW~~IA~~lg~~Rs---~kQCR~RW~n~L~P 64 (367)
-+|..+|.+.|- ...|..|+..|+...+ +...+..|.++|.|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 357888888873 3489999999985443 34567777777754
No 123
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=32.55 E-value=69 Score=26.17 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhh
Q 017727 74 EEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 74 EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~r 120 (367)
+-|..|+.+....|. .+.+||+.+ |-+...|+.|.+.+.+..+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 446677777777664 899999999 8899999999999888777643
No 124
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.51 E-value=94 Score=23.88 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34467887777665544 788999999999 89999999988776654
No 125
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=31.48 E-value=83 Score=24.11 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655554 4 7788999999999 88999999877665544
No 126
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=30.66 E-value=26 Score=28.16 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCC--CC---CHHHHHHHHHHHhhh
Q 017727 78 IICSLYISIGS--------RWSIIAAQLP--GR---TDNDIKNYWNTRLKK 115 (367)
Q Consensus 78 ~LleLv~~~G~--------kWskIAk~LP--GR---T~~qcKnRW~~~Lkk 115 (367)
.|..+|.+.|+ .|.+||..|. .. ....+|..|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777788874 7999999983 21 246899999988865
No 127
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=30.39 E-value=88 Score=21.93 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 69 GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 69 g~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..+|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3567766666554 4 6678999999999 88999999877665543
No 128
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.10 E-value=83 Score=23.45 Aligned_cols=43 Identities=28% Similarity=0.316 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..|+.|-+.|. ++ ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665554 44 6788999999999 89999999877665544
No 129
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.48 E-value=85 Score=26.63 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 77 NIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 77 ~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..++.+....|-...+||+.| |-|...|+.+....++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALE 229 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 334444444577899999999 8999999887765443
No 130
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.34 E-value=67 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727 73 EEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (367)
Q Consensus 73 ~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~ 119 (367)
.+-|..|+.+....|. .+.+||+.+ |-+...|+.|.+.+.+..+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 3456677777777664 899999999 889999999998887776654
No 131
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=27.84 E-value=9.6 Score=31.83 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC------CCCceeecccccCccC----ccccchhhcccccC
Q 017727 24 KLKDYIEKYGT------GGNWIALPQKIGLKRC----GKSCRLRWLNYLRP 64 (367)
Q Consensus 24 kL~~lV~kyG~------~~nW~~IA~~lg~~Rs----~kQCR~RW~n~L~P 64 (367)
+|..+|.+.|- ...|..|+..|+...+ +..++..|.++|-|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777762 2479999999985443 34567778887765
No 132
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.72 E-value=1e+02 Score=24.62 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 74 EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
+.+..++.++...|-...+||..| |-|...|+.+....++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 345566667667788999999999 8899999887765443
No 133
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.64 E-value=1.1e+02 Score=20.72 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 76 D~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
+..++.+ -..|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455566 36688899999999 89999999887766554
No 134
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.85 E-value=80 Score=24.99 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=23.3
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk 114 (367)
..|-...+||+.| |-|...|+.+....++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRK 150 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3567899999999 8999999888765543
No 135
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.74 E-value=15 Score=30.60 Aligned_cols=42 Identities=21% Similarity=0.461 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCC------CCCceeecccccCccC---ccccchhhcccccC
Q 017727 23 AKLKDYIEKYGT------GGNWIALPQKIGLKRC---GKSCRLRWLNYLRP 64 (367)
Q Consensus 23 ekL~~lV~kyG~------~~nW~~IA~~lg~~Rs---~kQCR~RW~n~L~P 64 (367)
-+|..+|.+.|- ...|..|+..|+...+ +...|..|.++|.|
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357778887763 3479999999984443 23456667666543
No 136
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.00 E-value=88 Score=25.63 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhh
Q 017727 74 EEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120 (367)
Q Consensus 74 EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~r 120 (367)
+-|..|+.+....|. .+.+||+.+ |-+...|+.|.+.+.+..+..+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEE
Confidence 345667777776664 899999999 8999999999998887776543
No 137
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.78 E-value=2.7e+02 Score=22.66 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc------ccCCCC----CCCCCHHHHHHHHHHHH
Q 017727 15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY------LRPNIK----HGGFSEEEDNIICSLYI 84 (367)
Q Consensus 15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~------L~P~ik----kg~WT~EED~~LleLv~ 84 (367)
.+.|.++-..++.++. -|. ....||+.++. +... -.||.+. +.+... ....++++.+.|++++.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--s~~~IA~~lgi--s~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--RPCDISRQLRV--SHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--CHHHHHHHHTC--CSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC--CHHHHHHHHCc--CHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4689998888888884 465 78899999873 3322 2334332 222211 23578888888888876
Q ss_pred HhC-CCHHHHHhhC
Q 017727 85 SIG-SRWSIIAAQL 97 (367)
Q Consensus 85 ~~G-~kWskIAk~L 97 (367)
... -.-.+|+..|
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 643 2334455444
No 138
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.91 E-value=77 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 76 D~~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778889999999999999 777776644
No 139
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.79 E-value=87 Score=25.69 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 78 IICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 78 ~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
.|..+....|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56666888999999999999 777666643
No 140
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.74 E-value=1.1e+02 Score=21.73 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 017727 73 EEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIK 106 (367)
Q Consensus 73 ~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcK 106 (367)
.-|...|.++...++++.++.|+.| |=+...+.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~ 50 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLY 50 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHH
Confidence 3477888999999999999999998 55554443
No 141
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.22 E-value=2.1e+02 Score=22.99 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc------ccCCCCCCC----CCHHHHHHHHH
Q 017727 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY------LRPNIKHGG----FSEEEDNIICS 81 (367)
Q Consensus 12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~------L~P~ikkg~----WT~EED~~Lle 81 (367)
......|.|+-..++.++ .-|. ....||+.++ .....-.||.+. +.+....|. .++++.+.|++
T Consensus 28 ~~~~~~s~e~r~~iv~~~-~~G~--s~~~iA~~lg---is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~ 101 (149)
T 1k78_A 28 VNGRPLPDVVRQRIVELA-HQGV--RPCDISRQLR---VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAE 101 (149)
T ss_dssp CTTSCCCHHHHHHHHHHH-HTTC--CHHHHHHHHT---CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-HcCC--CHHHHHHHHC---cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHH
Q ss_pred HHHHhCC-CHHHHHhhC---------CCCCHHHHHHHHHHHhhhH
Q 017727 82 LYISIGS-RWSIIAAQL---------PGRTDNDIKNYWNTRLKKK 116 (367)
Q Consensus 82 Lv~~~G~-kWskIAk~L---------PGRT~~qcKnRW~~~Lkkk 116 (367)
++...+. .-.+|+..| ..-+...|+...+..+..+
T Consensus 102 ~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~~ 146 (149)
T 1k78_A 102 YKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQP 146 (149)
T ss_dssp HHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC----
T ss_pred HHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcCC
No 142
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=23.10 E-value=83 Score=25.78 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 017727 78 IICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (367)
Q Consensus 78 ~LleLv~~~G~kWskIAk~LPGRT~~qcKn 107 (367)
.|..+....|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999999 777766643
No 143
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.30 E-value=30 Score=29.53 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC------CCCceeecccccCccC----ccccchhhcccccC
Q 017727 24 KLKDYIEKYGT------GGNWIALPQKIGLKRC----GKSCRLRWLNYLRP 64 (367)
Q Consensus 24 kL~~lV~kyG~------~~nW~~IA~~lg~~Rs----~kQCR~RW~n~L~P 64 (367)
+|..+|.+.|- ...|..|+..|+...+ +..++..|.++|-|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 56677777763 2479999999985442 34577888888876
No 144
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=22.16 E-value=38 Score=27.91 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=23.5
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 85 ~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..|-...+||..| |-|...|+.+....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466889999999 88999999887765543
No 145
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.15 E-value=1.3e+02 Score=23.03 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHH
Q 017727 73 EEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNY 108 (367)
Q Consensus 73 ~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnR 108 (367)
.-|...|.+++..+|++.++.|+.| |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999999999999999 7666655443
No 146
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.95 E-value=1e+02 Score=23.10 Aligned_cols=43 Identities=26% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 70 ~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
..|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3555665555 444 6788999999999 89999999877665544
No 147
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.00 E-value=2.1e+02 Score=22.33 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727 68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (367)
Q Consensus 68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk 115 (367)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45678888776654 3 3688999999999 88999999877765554
Done!