Query 017728
Match_columns 367
No_of_seqs 284 out of 1363
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1536 Biotin holocarboxylase 100.0 2.2E-61 4.8E-66 482.7 25.7 332 24-364 281-648 (649)
2 PRK06955 biotin--protein ligas 100.0 2.5E-55 5.4E-60 426.7 27.7 257 92-355 15-294 (300)
3 TIGR00121 birA_ligase birA, bi 100.0 2.3E-55 5E-60 413.5 24.9 231 112-354 2-236 (237)
4 COG0340 BirA Biotin-(acetyl-Co 100.0 5.9E-55 1.3E-59 410.4 26.0 232 115-356 1-237 (238)
5 PRK08330 biotin--protein ligas 100.0 6E-54 1.3E-58 403.7 25.8 233 108-355 1-234 (236)
6 PRK11886 bifunctional biotin-- 100.0 1.7E-52 3.7E-57 409.7 27.0 249 92-355 64-316 (319)
7 PTZ00275 biotin-acetyl-CoA-car 100.0 3.7E-52 8.1E-57 401.6 24.6 238 107-355 14-282 (285)
8 PRK13325 bifunctional biotin-- 100.0 4.2E-51 9E-56 427.8 28.5 251 91-355 65-323 (592)
9 PTZ00276 biotin/lipoate protei 100.0 5.3E-51 1.1E-55 385.9 24.3 226 107-350 4-242 (245)
10 PRK08477 biotin--protein ligas 100.0 1.8E-48 3.9E-53 360.5 23.0 198 111-339 2-204 (211)
11 PRK05935 biotin--protein ligas 100.0 2.9E-41 6.3E-46 307.8 19.0 161 113-285 6-177 (190)
12 PF03099 BPL_LplA_LipB: Biotin 99.9 3.5E-22 7.6E-27 168.5 8.2 119 115-242 2-125 (125)
13 PF02237 BPL_C: Biotin protein 98.4 8.3E-07 1.8E-11 63.5 6.6 47 304-354 1-47 (48)
14 PRK14348 lipoate-protein ligas 93.3 1.4 3E-05 41.6 11.7 119 148-283 79-218 (221)
15 TIGR00545 lipoyltrans lipoyltr 91.9 0.41 9E-06 47.5 6.7 70 139-222 67-136 (324)
16 PRK14342 lipoate-protein ligas 88.2 9.9 0.00021 35.7 12.1 117 148-283 70-203 (213)
17 TIGR00214 lipB lipoate-protein 87.8 13 0.00029 34.0 12.5 116 148-283 50-183 (184)
18 COG0095 LplA Lipoate-protein l 87.2 1.4 3.1E-05 41.9 6.1 74 137-222 66-141 (248)
19 PRK14344 lipoate-protein ligas 84.6 22 0.00047 33.6 12.5 118 148-283 88-221 (223)
20 PRK14345 lipoate-protein ligas 84.4 21 0.00045 34.0 12.4 119 148-284 76-216 (234)
21 PRK03822 lplA lipoate-protein 81.2 4.8 0.0001 40.3 7.1 67 139-222 68-138 (338)
22 PRK14343 lipoate-protein ligas 81.0 31 0.00066 32.9 12.0 118 148-284 80-219 (235)
23 PRK14349 lipoate-protein ligas 77.1 57 0.0012 30.8 12.4 119 148-284 65-205 (220)
24 PRK14341 lipoate-protein ligas 76.2 65 0.0014 30.2 12.5 115 149-283 71-211 (213)
25 COG0321 LipB Lipoate-protein l 71.3 85 0.0019 29.6 11.9 119 148-284 76-211 (221)
26 PF14563 DUF4444: Domain of un 67.4 11 0.00023 26.3 3.7 20 324-343 12-31 (42)
27 PRK14061 unknown domain/lipoat 66.8 11 0.00025 40.2 5.8 60 150-221 298-361 (562)
28 PF01423 LSM: LSM domain ; In 66.1 18 0.0004 26.7 5.4 33 304-339 6-38 (67)
29 cd01731 archaeal_Sm1 The archa 63.0 23 0.0005 26.7 5.4 33 305-340 9-41 (68)
30 smart00651 Sm snRNP Sm protein 58.9 25 0.00054 26.0 5.0 33 304-339 6-38 (67)
31 cd06168 LSm9 The eukaryotic Sm 58.4 24 0.00052 27.5 4.9 33 305-340 9-41 (75)
32 cd00600 Sm_like The eukaryotic 57.0 26 0.00057 25.4 4.8 32 305-339 5-36 (63)
33 cd01717 Sm_B The eukaryotic Sm 56.5 24 0.00051 27.5 4.6 33 304-339 8-40 (79)
34 cd01728 LSm1 The eukaryotic Sm 55.1 30 0.00064 26.9 4.9 34 304-340 10-43 (74)
35 cd01726 LSm6 The eukaryotic Sm 54.6 37 0.0008 25.5 5.3 32 305-339 9-40 (67)
36 PRK14346 lipoate-protein ligas 52.5 2.1E+02 0.0046 27.2 12.0 59 214-283 156-228 (230)
37 PRK00737 small nuclear ribonuc 52.4 43 0.00094 25.6 5.4 33 305-340 13-45 (72)
38 PF10842 DUF2642: Protein of u 51.3 89 0.0019 23.9 6.8 38 298-340 13-50 (66)
39 PF04017 DUF366: Domain of unk 50.2 65 0.0014 29.5 6.9 74 161-246 63-139 (183)
40 cd01727 LSm8 The eukaryotic Sm 49.4 69 0.0015 24.5 6.2 32 305-339 8-39 (74)
41 PF01287 eIF-5a: Eukaryotic el 49.2 29 0.00064 26.6 4.0 23 324-346 7-29 (69)
42 cd01722 Sm_F The eukaryotic Sm 48.3 58 0.0012 24.6 5.5 33 304-339 9-41 (68)
43 cd01721 Sm_D3 The eukaryotic S 48.1 1.2E+02 0.0026 23.0 7.5 44 304-354 8-51 (70)
44 cd01719 Sm_G The eukaryotic Sm 47.8 45 0.00098 25.6 4.9 33 304-339 8-40 (72)
45 cd01733 LSm10 The eukaryotic S 46.5 1.2E+02 0.0025 23.7 7.1 45 304-355 17-61 (78)
46 cd01732 LSm5 The eukaryotic Sm 45.6 89 0.0019 24.3 6.3 42 305-351 12-53 (76)
47 cd01723 LSm4 The eukaryotic Sm 44.1 1.4E+02 0.0029 23.1 7.1 43 305-354 10-52 (76)
48 cd01729 LSm7 The eukaryotic Sm 43.8 52 0.0011 25.9 4.7 33 304-339 10-42 (81)
49 cd01724 Sm_D1 The eukaryotic S 43.2 1.5E+02 0.0033 23.8 7.5 33 304-339 9-41 (90)
50 PF09465 LBR_tudor: Lamin-B re 40.0 1.5E+02 0.0033 21.9 6.5 45 303-349 6-51 (55)
51 PRK14347 lipoate-protein ligas 39.0 3.3E+02 0.0072 25.5 12.6 118 149-283 69-208 (209)
52 smart00333 TUDOR Tudor domain. 39.0 1.1E+02 0.0024 21.4 5.6 45 303-350 3-48 (57)
53 COG2029 Uncharacterized conser 38.5 1.3E+02 0.0029 27.2 6.9 68 210-286 110-178 (189)
54 PRK09618 flgD flagellar basal 32.5 1.3E+02 0.0028 26.5 5.8 80 264-348 47-132 (142)
55 PF14326 DUF4384: Domain of un 32.3 1.9E+02 0.0041 22.4 6.3 35 304-341 4-38 (83)
56 PF11095 Gemin7: Gem-associate 31.0 2.3E+02 0.0051 22.5 6.5 43 293-338 10-53 (80)
57 cd01725 LSm2 The eukaryotic Sm 30.4 1.5E+02 0.0032 23.3 5.4 33 304-339 9-41 (81)
58 cd01720 Sm_D2 The eukaryotic S 26.2 2.4E+02 0.0051 22.6 5.9 37 300-339 8-44 (87)
59 cd04479 RPA3 RPA3: A subfamily 24.4 2E+02 0.0043 23.4 5.4 29 304-344 13-41 (101)
60 COG1958 LSM1 Small nuclear rib 23.4 2E+02 0.0042 22.2 4.9 32 305-339 16-47 (79)
61 PF08863 YolD: YolD-like prote 22.5 3.6E+02 0.0079 20.7 7.7 47 304-350 40-87 (92)
62 PF12945 YcgR_2: Flagellar pro 21.9 1.2E+02 0.0026 23.0 3.5 35 304-340 2-39 (87)
63 cd04468 S1_eIF5A S1_eIF5A: Euk 21.2 86 0.0019 24.2 2.4 20 325-345 7-26 (69)
64 PF08661 Rep_fac-A_3: Replicat 20.0 3.2E+02 0.0069 22.3 5.8 34 304-348 16-50 (109)
No 1
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.2e-61 Score=482.75 Aligned_cols=332 Identities=49% Similarity=0.831 Sum_probs=288.6
Q ss_pred hhhhccccccc---ccccccc--cCccccceEEEeccchhHHHH-------HHhhccCCC-cCCCCCC-ceeEEeccccc
Q 017728 24 SLVSANTKPFR---LSASSAA--MDSNSSCMLVLSGKSLAENEI-------AESLKSNST-LKLPDNS-EVSIHLQSEIV 89 (367)
Q Consensus 24 ~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~-~~~~~~~~~~~ 89 (367)
.++..+.+++. ..+..+. .+....|++++|+.++++.|+ ++.+.++++ ++.||+. ++.|.+.+|..
T Consensus 281 ~~~~~n~~~~~r~~~k~~a~~l~~d~k~~~sl~~~~~~s~~tei~d~~~~~~~~ld~s~~~~k~~D~s~k~~i~~~~E~d 360 (649)
T KOG1536|consen 281 ILLFRNLKPLKRLSEKLLASALECDSKASCSLVLCGFSSAETEIKDTNKEFLKGLDNSNSKLKSPDNSVKFVIILGSEED 360 (649)
T ss_pred hhhhcccchHHHHHHHHHHhhhccccccCceeEEeeccccchhhhhhHHHHHHhhhhhhhhccCCCcceeEEEEeccccc
Confidence 46677766654 3334443 334689999999999999998 888877766 9999998 99999988863
Q ss_pred -----cCCCCCHHHHHhhccccccCceEEEccCCCCHHHHHHHccCCCC--CeeEEEeCcccCCccCCCCccccCCCCce
Q 017728 90 -----KQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELP--VGAVCVADVQFKGRGRSKNAWESPKGCLM 162 (367)
Q Consensus 90 -----~~~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~--~g~vViA~~QTaGRGR~GR~W~Sp~G~L~ 162 (367)
..+.||.+.|+..|.+.+||+.++|.|+++||++.+..+..++| .|.+|+|..||+||||.||.|.||.|+++
T Consensus 361 i~~~~~s~nFdl~lY~k~i~tk~~G~~ll~a~V~tST~~ild~n~s~lpse~g~vvv~~~Q~sGRGRGgN~WlsP~G~~~ 440 (649)
T KOG1536|consen 361 ILVADDSPNFDLELYFKSINTKRFGRVLLWAPVLTSTMDILDHNFSELPSEVGLVVVANIQTSGRGRGGNVWLSPKGCAM 440 (649)
T ss_pred cccccCCCCcCHHHHHHHhhhhccCceEEEEeecchHHHHHhhhhhcCCcccceEEEEeEEeecccCCCCeeecCcceEe
Confidence 45789999999999999999999999999999999998888887 79999999999999999999999999999
Q ss_pred eeeeeeccCC----CCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECC-eEeEEEeeeeeccCCcceEEE
Q 017728 163 FSFTIQMEDG----RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILCTSTYRTKKFNVSI 237 (367)
Q Consensus 163 fSl~l~~~~~----~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~g-kKvgGILiE~~~~~~~~~vVI 237 (367)
||+++.++.. ..+|++++++.+|++++++.. .|+|+++++||||||||+++ -||||||+.+.+.++.++++|
T Consensus 441 ~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~---pGy~dIpvrIKWPNDlY~~~~lKvgGiLv~st~r~n~f~v~i 517 (649)
T KOG1536|consen 441 SSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYA---PGYPDIPVRIKWPNDLYVNGYLKVGGILVTSTYRSNKFNVSI 517 (649)
T ss_pred EEEEEEeecccccccchHHHHHHHHHHHHHHHhcC---CCCCCCceeeecCccceeeeccccceEEEEeeecCceEEEEE
Confidence 9999987643 345566667777777776654 58999999999999999999 999999999999999999999
Q ss_pred EeeecCCCCCCcchHHHHHHhhhcCCC----CCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEE
Q 017728 238 GIGLNVNNEEPTTCLNAVLRKLSDSTY----QFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQE 313 (367)
Q Consensus 238 GIGINvn~~~p~t~l~~~l~~~~~~~~----~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~ 313 (367)
|+||||.+..|++||++.+.++++... .+.+++|++++++.|+.++..|+++||+.++..|+++|+|.+|+|.+.+
T Consensus 518 GCGiNVtN~~PT~cLN~ll~~~n~e~~~~~l~~k~EkLiA~~~n~fe~~~k~f~d~G~~silp~YYeyWLHS~Q~V~L~d 597 (649)
T KOG1536|consen 518 GCGINVTNDGPTTCLNDLLDEMNEERNLLHLAIKAEKLIAAVFNKFEKYFKLFMDQGPKSILPLYYEYWLHSNQRVILED 597 (649)
T ss_pred eeeeEecCCCCceeHHHHHHhhchhhccccchhhHHHHHHHHHHHHHHHHHHHHhhCHHhHhHHHHHHHhccCcEEeccC
Confidence 999999999999999999887765332 4589999999999999999999999999999999999999999999987
Q ss_pred CCccEEEEeeEEEEEeCCCceEEEEeC------CCcEEEEcCCCceeecccCccccC
Q 017728 314 KNEDQVVENVVTIQGLTSSGYLLAIGD------DNQMCELHPDGNSSTYYPKRDKSS 364 (367)
Q Consensus 314 ~~~~~~~~~~G~i~GId~~G~Llv~~~------dG~~~~l~pdg~Sfd~~~gl~~~~ 364 (367)
.++. .++.|+|+.|+|+++.. +++++++|||||+|||||+||.-|
T Consensus 598 ~~e~------vii~~~dD~G~L~~~~~~~~~~~t~kv~~l~PDGNtFDmmknLI~~K 648 (649)
T KOG1536|consen 598 KGEA------VIIGGTDDIGFLQVSGLLLAVGDTNKVYELHPDGNTFDMMKNLIRHK 648 (649)
T ss_pred CCcc------eEEeeeecccceeeehhcccCCCCCceEEEcCCCcHHHHHHHhhccC
Confidence 7643 35789999999999854 459999999999999999999865
No 2
>PRK06955 biotin--protein ligase; Provisional
Probab=100.00 E-value=2.5e-55 Score=426.69 Aligned_cols=257 Identities=25% Similarity=0.310 Sum_probs=211.4
Q ss_pred CCCCHHHHHhhccccccCceEEEccCCCCHHHHHHHccCC-------CCCeeEEEeCcccCCccCCCCccccCCC-Ccee
Q 017728 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCE-------LPVGAVCVADVQFKGRGRSKNAWESPKG-CLMF 163 (367)
Q Consensus 92 ~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~-------~~~g~vViA~~QTaGRGR~GR~W~Sp~G-~L~f 163 (367)
=.++.+.+...+++..++..++++++++|||+++++.... .++|+||+|++||+||||+||+|+||+| +|||
T Consensus 15 ~~l~~~~i~~~~~~~~~~~~i~~~~~v~STN~~a~~~~~~~~~~~~~~~~g~vvvA~~QTaGRGR~GR~W~Sp~G~~L~~ 94 (300)
T PRK06955 15 WRIDRDRLDAHLAAAARAWPLEIVEETGSTNADLMARLKALPRSADALPAPIVRVAYEQTAGRGRQGRPWFAQPGNALLF 94 (300)
T ss_pred CCCCHHHHHhhcccccCCceEEEEeCCCCHHHHHHHHHHhcccccccCCCCeEEEECccccCCCCCcCcccCCCCCcEEE
Confidence 4689999999997766788899999999999999765321 4789999999999999999999999999 5999
Q ss_pred eeeeecc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCc-ceEEEEeee
Q 017728 164 SFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGL 241 (367)
Q Consensus 164 Sl~l~~~-~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~-~~vVIGIGI 241 (367)
|++++++ ....++.+++++|+||+++|+++.... +.+++||||||||++||||||||+|....++. ..+||||||
T Consensus 95 Si~l~~~~~~~~~~~Lsl~~glAv~~al~~~~~~~---~~~~~iKWPNDIl~~gkKiaGILiE~~~~~~~~~~vVIGIGI 171 (300)
T PRK06955 95 SVACVLPRPVAALAGLSLAVGVALAEALAALPAAL---GQRIALKWPNDLLIAGRKLAGILIETVWATPDATAVVIGIGL 171 (300)
T ss_pred EeEecCCCChHHhhhHHHHHHHHHHHHHHHhhccc---CCceeeeCCceeeECCcEEEEEEEEcccCCCCccEEEEEEEE
Confidence 9999875 334577899999999999999874322 24799999999999999999999998776544 469999999
Q ss_pred cCCCCCC----cchHHH-------H--HHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCE
Q 017728 242 NVNNEEP----TTCLNA-------V--LRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQR 308 (367)
Q Consensus 242 Nvn~~~p----~t~l~~-------~--l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~ 308 (367)
||++..+ .++++. . ...+...+..++|+++++.++++|+++|..|...||+.+.++|++++++.|++
T Consensus 172 Nv~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 251 (300)
T PRK06955 172 NVRRADAVAAEVDALRAREAALARGLPPVALAAACAGANLTDTLAAALNALAPALQAFGADGLAPFAARWHALHAYAGRE 251 (300)
T ss_pred eeCCCccccccccccccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCe
Confidence 9997532 111110 0 00111134678999999999999999999999999999999999999999999
Q ss_pred EEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCCceee
Q 017728 309 VIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSST 355 (367)
Q Consensus 309 V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg~Sfd 355 (367)
|++...++. .++ |+++|||++|+|+|++++| ++.+..++.++-
T Consensus 252 V~v~~~~~~-~~~--G~~~gId~~G~L~v~~~~g-~~~~~sGeV~~~ 294 (300)
T PRK06955 252 VVLLEDGAE-LAR--GVAHGIDETGQLLLDTPAG-RQAIAAGDVSLR 294 (300)
T ss_pred EEEEECCCc-EEE--EEEeeECCCceEEEEeCCC-eEEEEEEEEEEe
Confidence 999765433 233 8999999999999999888 578999998863
No 3
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=100.00 E-value=2.3e-55 Score=413.46 Aligned_cols=231 Identities=29% Similarity=0.446 Sum_probs=195.1
Q ss_pred EEEccCCCCHHHHHHHccCC-CCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeecc-CCCCcchhHHHHHHHHHHH
Q 017728 112 LIWSPRLPSTHDVVSHNFCE-LPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEA 189 (367)
Q Consensus 112 l~~~~~v~STN~~a~~~~~~-~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~-~~~~l~~ls~~~glAV~~a 189 (367)
++++++++|||+++++++.. .++++||+|++||+||||+||+|+||+|+||||++++++ +...++.+++++|+||++|
T Consensus 2 i~~~~~~~STn~~~~~~~~~~~~~~~vv~A~~QTaGRGR~gr~W~Sp~g~l~~S~~l~~~~~~~~~~~ls~~~~lAv~~a 81 (237)
T TIGR00121 2 VIVLDVIDSTNQYALELAKEGKLKGDLVVAEYQTAGRGRRGRKWLSPEGGLYFSLILRPDLPKSPAPGLTLVAGIAIAEV 81 (237)
T ss_pred EEEEeecCCHHHHHHHHHhcCCCCCeEEEEcccCCCCCCCCCcccCCCCceEEEEEECCCCChhHhhhhHHHHHHHHHHH
Confidence 67899999999999987643 458999999999999999999999999999999999875 3356788999999999999
Q ss_pred HHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCc-ceEEEEeeecCCCCCCcchHHHHHHhh-hcCCCCCC
Q 017728 190 INYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVNNEEPTTCLNAVLRKL-SDSTYQFR 267 (367)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~-~~vVIGIGINvn~~~p~t~l~~~l~~~-~~~~~~~~ 267 (367)
|+++. .+++||||||||++||||||||+|.....+. ..+||||||||++..++..+......+ ...+..++
T Consensus 82 l~~~~-------~~~~iKWPNDI~~~~kKi~GIL~E~~~~~~~~~~vviGIGiNv~~~~~~~~~~~~a~sl~~~~~~~~~ 154 (237)
T TIGR00121 82 LKELG-------DQVQVKWPNDILLKDKKLGGILTELTGKENRADYVVIGIGINVQNRKPAESLREQAISLSEEAGIDLD 154 (237)
T ss_pred HHHhC-------CCCCCcCCceEEECCeEEEEEEEEcccCCCCcCEEEEEEEEccCCCCCchhhcccceehHHhhCCCCC
Confidence 99873 4699999999999999999999998765443 569999999999764332222211111 12356899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEE
Q 017728 268 REDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCEL 347 (367)
Q Consensus 268 r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l 347 (367)
|+++++.++++|+.+|..|..+||+++.++|++++++.|++|++...++. ++ |++.|||++|+|+|+ ++|.++.+
T Consensus 155 ~~~ll~~l~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~~--G~~~gI~~~G~L~v~-~~~~~~~~ 229 (237)
T TIGR00121 155 RGELIEGFLRNFEENLEWFEQEGIDEILSKWEKLSAHIGREVSLTTGNGE--IE--GIARGIDKDGALLLE-DGGGIKKI 229 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhhccCCeEEEEeCCcE--EE--EEEEeECCCceEEEE-eCCeEEEE
Confidence 99999999999999999999999999999999999999999999876543 33 899999999999999 56778889
Q ss_pred cCCCcee
Q 017728 348 HPDGNSS 354 (367)
Q Consensus 348 ~pdg~Sf 354 (367)
..++.++
T Consensus 230 ~sGev~~ 236 (237)
T TIGR00121 230 ISGEISL 236 (237)
T ss_pred EEEEEEE
Confidence 9988875
No 4
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=100.00 E-value=5.9e-55 Score=410.42 Aligned_cols=232 Identities=29% Similarity=0.473 Sum_probs=201.9
Q ss_pred ccCCCCHHHHHHHccC-CCCCeeEEEeCcccCCccCCCCccccCCC-CceeeeeeeccC-CCCcchhHHHHHHHHHHHHH
Q 017728 115 SPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQMED-GRVVPLLQYVASLALTEAIN 191 (367)
Q Consensus 115 ~~~v~STN~~a~~~~~-~~~~g~vViA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~~~~-~~~l~~ls~~~glAV~~aL~ 191 (367)
+++++|||++|++++. +.+.+++|+|++||+||||+||.|+||+| +||||+++++.. ...++.+++++|+||++||+
T Consensus 1 ~~~i~STn~~a~~~~~~~~~~~~vvvA~~QTaGRGR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~al~ 80 (238)
T COG0340 1 FDEIDSTNTEAKERAASGAPEGTVVVAEEQTAGRGRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEALR 80 (238)
T ss_pred CCccchHHHHHHHHHHhCCCCCcEEEEeeeccCcCCCCCcccCCCCCCEEEEEEEcCCcChhhcchhHHHHHHHHHHHHH
Confidence 4789999999998874 57888899999999999999999999998 899999999875 36789999999999999999
Q ss_pred HhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCC-cceEEEEeeecCCCCCCc-chHHHHHHhhhcCCCCCCHH
Q 017728 192 YVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK-KFNVSIGIGLNVNNEEPT-TCLNAVLRKLSDSTYQFRRE 269 (367)
Q Consensus 192 ~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~-~~~vVIGIGINvn~~~p~-t~l~~~l~~~~~~~~~~~r~ 269 (367)
++. .+++||||||||++|||+||||+|+....+ ...+||||||||++..|+ ..+.....++......++|+
T Consensus 81 ~~~-------~~~~iKWPNDv~~~~kKl~GIL~E~~~~~~~~~~~viGIGINv~~~~~~~~~i~~~atsL~~~~~~~~r~ 153 (238)
T COG0340 81 KFG-------IDVRIKWPNDVLLNGKKLAGILVEAVGDENGLLAVVVGIGINVNNPPPDFEDIGQPATSLQEEGEEIDRE 153 (238)
T ss_pred HhC-------cccCccCCcceeECCcceEEEEEeeeecCCCceEEEEEEEEeeccCCcchhhhhhhhhhHHhhhCCCCHH
Confidence 974 579999999999999999999999987654 467999999999987553 12322223333223579999
Q ss_pred HHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcC
Q 017728 270 DVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHP 349 (367)
Q Consensus 270 ~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~p 349 (367)
+|++.++++|+.+|..|.+.++.+++++|++++.++|++|++..+++. +.. |++.|||++|+|+++.++|.++.+.+
T Consensus 154 ~l~~~ll~~l~~~~~~~~~~~~~~i~~~~~~~~~~~g~~V~~~~~~~~-~~g--g~a~~id~~G~L~l~~~~g~~~~~~~ 230 (238)
T COG0340 154 ELLAKLLKELEKYLRQFLREGFAPILARWRARSLSLGKEVRLTLGGGV-IFG--GIAKGIDEDGALLLETDDGEVQTIYS 230 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhccCCCEEEEEeCCCc-Eee--eEEEEECCCceEEEEeCCCeEEEEec
Confidence 999999999999999999999999999999999999999999988754 322 69999999999999999999999999
Q ss_pred CCceeec
Q 017728 350 DGNSSTY 356 (367)
Q Consensus 350 dg~Sfd~ 356 (367)
++.||+.
T Consensus 231 Gev~~~~ 237 (238)
T COG0340 231 GEVSLRR 237 (238)
T ss_pred cEEEeec
Confidence 9999875
No 5
>PRK08330 biotin--protein ligase; Provisional
Probab=100.00 E-value=6e-54 Score=403.74 Aligned_cols=233 Identities=27% Similarity=0.373 Sum_probs=196.0
Q ss_pred cCceEEEccCCCCHHHHHHHccCCCCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeeccC-CCCcchhHHHHHHHH
Q 017728 108 FGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMED-GRVVPLLQYVASLAL 186 (367)
Q Consensus 108 ~g~~l~~~~~v~STN~~a~~~~~~~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~-~~~l~~ls~~~glAV 186 (367)
+|+.++++++++|||+++++.....++|++|+|++||+||||+||+|.||+|+||||++++++. +..++.+++++|+||
T Consensus 1 ~g~~i~~~~~v~STn~~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~~~~~~av 80 (236)
T PRK08330 1 IGRNIIYFDEVDSTNEYAKRIAPDEEEGTVIVADRQTAGHGRKGRAWASPEGGLWMSVILKPKVSPEHLPKLVFLGALAV 80 (236)
T ss_pred CCceEEEEcccCcHHHHHHHHhcCCCCCEEEEECccccCCCCCCCeeeCCCCCeEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3788999999999999999877667899999999999999999999999999999999998753 345778999999999
Q ss_pred HHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeecCCCCCCcchHHHHHHhhhcCCCCC
Q 017728 187 TEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQF 266 (367)
Q Consensus 187 ~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~~~p~t~l~~~l~~~~~~~~~~ 266 (367)
+++|+++ | .+++||||||||++||||||||+|... ..+|||||||++++.|......+.+.....+..+
T Consensus 81 ~~~l~~~----g---~~~~iKWPNDI~~~~kKi~GILiE~~~----~~~viGiGiNv~~~~p~~l~~~atsL~~~~~~~~ 149 (236)
T PRK08330 81 VDTLREF----G---IEGKIKWPNDVLVNYKKIAGVLVEGKG----DFVVLGIGLNVNNEIPDELRETATSMKEVLGREV 149 (236)
T ss_pred HHHHHHc----C---CCccccCCCeEEECCeEEEEEeEEEeC----CEEEEEEEEecCCCCCcccccccccHHHhhCCCC
Confidence 9999985 2 468999999999999999999999763 2689999999997555321111111111124578
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEE
Q 017728 267 RREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCE 346 (367)
Q Consensus 267 ~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~ 346 (367)
+++++++.++++|+.+|+.|.+++ ..+.++|++++.+.|++|++..+++. ..+ |++.|||++|+|+|++++|+++.
T Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~--G~~~gI~~~G~L~v~~~~g~~~~ 225 (236)
T PRK08330 150 PLIEVFKRLVENLDRWYKLFLEGP-GEILEEVKGRSMILGKRVKIIGDGEI-LVE--GIAEDIDEFGALILRLDDGTVKK 225 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcCCeEEEEECCcE-EEE--EEEEEECCCCEEEEEECCCCEEE
Confidence 999999999999999999998765 78999999999999999999875432 223 89999999999999999999989
Q ss_pred EcCCCceee
Q 017728 347 LHPDGNSST 355 (367)
Q Consensus 347 l~pdg~Sfd 355 (367)
+..++.++-
T Consensus 226 ~~~gev~~~ 234 (236)
T PRK08330 226 VLYGDVSLR 234 (236)
T ss_pred EEEEEEEEe
Confidence 999999874
No 6
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=100.00 E-value=1.7e-52 Score=409.67 Aligned_cols=249 Identities=26% Similarity=0.396 Sum_probs=208.7
Q ss_pred CCCCHHHHHhhccccccCceEEEccCCCCHHHHHHHccCCCCCeeEEEeCcccCCccCCCCccccCCC-Cceeeeeeecc
Q 017728 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQME 170 (367)
Q Consensus 92 ~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~g~vViA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~~~ 170 (367)
..+++..+...+. +..++++++++|||+++++.+.+.++|+||+|++||+||||+||+|.||+| +||||++++++
T Consensus 64 ~~l~~~~l~~~l~----~~~i~~~~~v~STn~~~~e~~~~~~~~~vv~A~~Qt~GrGR~gr~W~Sp~g~~L~~S~~~~~~ 139 (319)
T PRK11886 64 DLLDPERISSQLP----PGRVTVLPVIDSTNQYLLDRIAELKSGDLCLAEYQTAGRGRRGRQWFSPFGGNLYLSLYWRLN 139 (319)
T ss_pred ccCCHHHHHhhCC----CCeEEEEeCCCCHHHHHHHhhcCCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEEeCCC
Confidence 6688888876653 577899999999999998877667899999999999999999999999999 59999999876
Q ss_pred -CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCC-cceEEEEeeecCCCCCC
Q 017728 171 -DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK-KFNVSIGIGLNVNNEEP 248 (367)
Q Consensus 171 -~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~-~~~vVIGIGINvn~~~p 248 (367)
....++.+++++|+||++||+++. ..+++||||||||++||||||||+|.....+ ...+|||||||||++.+
T Consensus 140 ~~~~~~~~l~l~~~~av~~al~~~~------~~~~~iKWPNDI~~~~kKl~GIL~E~~~~~~~~~~~viGIGiNv~~~~~ 213 (319)
T PRK11886 140 QGPAQAMGLSLVVGIAIAEALRRLG------AIDVGLKWPNDIYLNDRKLAGILVELSGETGDAAHVVIGIGINVAMPDF 213 (319)
T ss_pred CChHHHhhHHHHHHHHHHHHHHHhc------CCCcceeCCceeeECCeeEEEEEEEeccCCCCccEEEEEEEEccCCCCC
Confidence 334577899999999999999874 2479999999999999999999999876544 35799999999997532
Q ss_pred cch-HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEE
Q 017728 249 TTC-LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQ 327 (367)
Q Consensus 249 ~t~-l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~ 327 (367)
... +......+...+..++++++++.++++|+.+|..|.+.||+++.++|++++.++|+.|++...++. ++ |++.
T Consensus 214 ~~~~~~~~~~sl~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~--G~~~ 289 (319)
T PRK11886 214 PEELIDQPWSDLQEAGPTIDRNQLAAELIKQLRAALELFEQEGLAPFLERWKKLDLFLGREVKLIIGDKE--IS--GIAR 289 (319)
T ss_pred chhhhccceeeHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccCCeEEEEeCCcE--EE--EEEE
Confidence 211 211111222225689999999999999999999999999999999999999999999999876542 33 8999
Q ss_pred EeCCCceEEEEeCCCcEEEEcCCCceee
Q 017728 328 GLTSSGYLLAIGDDNQMCELHPDGNSST 355 (367)
Q Consensus 328 GId~~G~Llv~~~dG~~~~l~pdg~Sfd 355 (367)
|||++|.|+|+ ++|.++.+..++.++.
T Consensus 290 gi~~~G~L~i~-~~g~~~~~~~gev~~~ 316 (319)
T PRK11886 290 GIDEQGALLLE-DDGVEKPFNGGEISLR 316 (319)
T ss_pred EECCCceEEEE-eCCcEEEEEEeEEEEe
Confidence 99999999999 6777889999998864
No 7
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=100.00 E-value=3.7e-52 Score=401.64 Aligned_cols=238 Identities=23% Similarity=0.348 Sum_probs=194.6
Q ss_pred ccCceEEEccCCCCHHHHHHHcc----C-CC--CCee-EEEeCcccCCccCC------CCccccCCCCceeeeeeecc--
Q 017728 107 RFGRLLIWSPRLPSTHDVVSHNF----C-EL--PVGA-VCVADVQFKGRGRS------KNAWESPKGCLMFSFTIQME-- 170 (367)
Q Consensus 107 ~~g~~l~~~~~v~STN~~a~~~~----~-~~--~~g~-vViA~~QTaGRGR~------GR~W~Sp~G~L~fSl~l~~~-- 170 (367)
.+|..++++++++|||++++++. . +. ++++ ||+|++||+||||+ ||+|+||+|+||||++++++
T Consensus 14 ~~~~~~~~~~~v~STN~~a~~~~~~~~~~g~~~~~~~~vv~A~~QT~GRGR~~~~~~~gR~W~Sp~G~L~~S~~l~~~~~ 93 (285)
T PTZ00275 14 ELNALRLHFDVLDSTQLYCKRNMKRFIQNGKLQDDNMIIVSCNEQTNGIGTRDTKKNQDRIWLSEKGNLFTTFVFLWNRN 93 (285)
T ss_pred hcCcEEEEEcccCcHHHHHHHhHHHHhhcCCcCCCCeEEEEECcccCCCCcCCCCCCCCCEEECCCCceEEEEEEecCCc
Confidence 46889999999999999998853 1 22 4665 66799999999997 99999999999999999754
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccC------C-cceEEEEeeecC
Q 017728 171 DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRT------K-KFNVSIGIGLNV 243 (367)
Q Consensus 171 ~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~------~-~~~vVIGIGINv 243 (367)
.....+++++++|+||+++|+.+ + .+++||||||||++||||||||+|..... + ...+||||||||
T Consensus 94 ~~~~~~~Lsl~~alAv~~~L~~~----~---~~~~IKWPNDI~~~~kKiaGILiE~~~~~~~~~~~~~~~~vViGIGINv 166 (285)
T PTZ00275 94 DIEKVKYLAQTCTVAISKTLEYF----H---LVTQIKWINDVLVNYKKIAGCLVHLYYLDDFPNLNSRYVCVMVGIGINV 166 (285)
T ss_pred CHhHhHHHHHHHHHHHHHHHHHh----C---CceeEECCCccccCCcEEEEEEEeeeeccccccccCceeEEEEEEEEec
Confidence 23557789999999999999985 2 47999999999999999999999987532 2 246999999999
Q ss_pred CCCCC-------cchHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECC
Q 017728 244 NNEEP-------TTCLNAVLRK-LSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKN 315 (367)
Q Consensus 244 n~~~p-------~t~l~~~l~~-~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~ 315 (367)
|+..+ .+++...... ........++++|++.++++|+.+|..|...||+.+.++|+++++++||.|++..++
T Consensus 167 n~~~~~~~~~~~atSL~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~g~~~i~~~~~~~~~~~g~~V~v~~~~ 246 (285)
T PTZ00275 167 TLEDKHNLLNNNYTSIKKELQRDFNTPKSIPSVEQVTEKLIINLKAVINKLRKEGFSSFLDYITPRLLYKDKKVLIDQDN 246 (285)
T ss_pred CCCCCcccccCCcccHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccCCCEEEEEeCC
Confidence 97532 2344332110 000112457999999999999999999999999999999999999999999998765
Q ss_pred ccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCCceee
Q 017728 316 EDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSST 355 (367)
Q Consensus 316 ~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg~Sfd 355 (367)
+ .++ |++.|||++|+|+|++++|.++.+..++.++.
T Consensus 247 ~--~~~--G~~~gId~~G~L~i~~~~G~~~~~~sGev~~~ 282 (285)
T PTZ00275 247 E--LIV--GYLQGLLHDGSLLLLREKNKLVRVNTGHLRLK 282 (285)
T ss_pred C--EEE--EEEEEECCCCeEEEEeCCCCEEEEEEEEEEEc
Confidence 3 333 89999999999999999999889999988764
No 8
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=100.00 E-value=4.2e-51 Score=427.81 Aligned_cols=251 Identities=24% Similarity=0.357 Sum_probs=208.7
Q ss_pred CCCCCHHHHHhhccccccCceEEEccCCCCHHHHHHHccC---CCCCeeEEEeCcccCCccCCCCccccCCC-Cceeeee
Q 017728 91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFC---ELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFT 166 (367)
Q Consensus 91 ~~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~---~~~~g~vViA~~QTaGRGR~GR~W~Sp~G-~L~fSl~ 166 (367)
.+.+|++.+...|.+. +..+.++++++|||+++++... ..++|+||+|++||+||||+||+|+||+| +||||++
T Consensus 65 ~~lL~~~~I~~~l~~~--~~~i~~~~~idSTN~~~~~~~~~~~~~~~g~vvvAe~QTaGRGRrGR~W~Sp~G~~Ly~S~~ 142 (592)
T PRK13325 65 LAVFDAEGLRELGERS--GFQTALKHECASSNDEILELARIAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFG 142 (592)
T ss_pred cccCCHHHHHHhhhcC--CCcEEEEeCCCCHHHHHHHHHhhccCCCCCeEEEECccCCCCCCCCCcccCCCCCcEEEEee
Confidence 4679999999999644 6779999999999999998643 25889999999999999999999999999 5999999
Q ss_pred eeccC-CCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeecCCC
Q 017728 167 IQMED-GRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN 245 (367)
Q Consensus 167 l~~~~-~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~ 245 (367)
++++. ...++.+++++|+||+++|+++ | .+++||||||||++||||||||+|....++..++||||||||+.
T Consensus 143 l~~~~~~~~~~~Lsl~vgvAv~~aL~~~----g---~~v~lKWPNDIl~~gkKlaGILiE~~~~~~~~~vVIGIGINv~~ 215 (592)
T PRK13325 143 WVFDRPQYELGSLSPVAAVACRRALSRL----G---LKTQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGINFVL 215 (592)
T ss_pred ecCCCChhhhhhHHHHHHHHHHHHHHHc----C---CCceEeCcceEEECCceEEEEEEeeeecCCCcEEEEEEEEeeCC
Confidence 98763 3567889999999999999985 3 47999999999999999999999988544556799999999986
Q ss_pred CCC---cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEe
Q 017728 246 EEP---TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVEN 322 (367)
Q Consensus 246 ~~p---~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~ 322 (367)
... ..++.. +.........++|+++++.++++|+..|..|.+.||.++.++|++++++.|++|++...++. .++
T Consensus 216 p~~~~~~~~~~s-L~~~~~~~~~~dr~~ll~~ll~~l~~~l~~~~~~g~~~~~~~w~~~~~~~gk~V~v~~~~~~-~~~- 292 (592)
T PRK13325 216 PKEVENAASVQS-LFQTASRRGNADAAVLLETLLAELDAVLLQYARDGFAPFVAEYQAANRDHGKAVLLLRDGET-VFE- 292 (592)
T ss_pred CcccccCcChHH-HHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCeEEEEeCCCc-EEE-
Confidence 321 111111 11111112368999999999999999999999999999999999999999999999754433 233
Q ss_pred eEEEEEeCCCceEEEEeCCCcEEEEcCCCceee
Q 017728 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSST 355 (367)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~pdg~Sfd 355 (367)
|++.|||++|+|+|++++|. +.+..++.|+-
T Consensus 293 -Gi~~GId~~G~L~l~~~~g~-~~~~sGEVslr 323 (592)
T PRK13325 293 -GTVKGVDGQGVLHLETAEGK-QTVVSGEISLR 323 (592)
T ss_pred -EEEEEECCCCEEEEEECCCe-EEEEEEeEEEe
Confidence 89999999999999998886 68999999874
No 9
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=100.00 E-value=5.3e-51 Score=385.92 Aligned_cols=226 Identities=25% Similarity=0.348 Sum_probs=178.0
Q ss_pred ccCceEEEccCCCCHHHHHHHccCC-CCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeecc--CCCCcchhHHHHH
Q 017728 107 RFGRLLIWSPRLPSTHDVVSHNFCE-LPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME--DGRVVPLLQYVAS 183 (367)
Q Consensus 107 ~~g~~l~~~~~v~STN~~a~~~~~~-~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~--~~~~l~~ls~~~g 183 (367)
..|..++++++++|||++|++.... .++|++|+|++||+||||+||+|.||+|+||||++++++ +....+++++++|
T Consensus 4 ~~~~~i~~~~~v~STN~~ak~~~~~~~~~~~vviA~~QT~GRGR~gR~W~Sp~g~l~~S~~l~~~~~~~~~~~~lsl~~a 83 (245)
T PTZ00276 4 DVPPNIHFVGEVTSTMDVARTMLAAAGGKPFAVLAESQTAGRGTGGRTWTSPKGNMYFTLCIPQKGVPPELVPVLPLITG 83 (245)
T ss_pred CCCceEEEEeCCCCHHHHHHHHHhcCCCCCeEEEECCCCCCCCCCCCcccCCCCCeEEEEEECCCccChhHhhHHHHHHH
Confidence 3577899999999999999987543 467899999999999999999999999999999999764 3345678999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeecCCCCC--C-----cchHHHHH
Q 017728 184 LALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEE--P-----TTCLNAVL 256 (367)
Q Consensus 184 lAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~~~--p-----~t~l~~~l 256 (367)
+||++||++++. +.+++||||||||++|||+||||+|...+ .+||||||||++.+ | .++++...
T Consensus 84 lav~~al~~~~~-----~~~~~iKWPNDI~~~~kKiaGILiE~~~~----~vvIGIGINv~~~~~~~~~~~~~~~l~sl~ 154 (245)
T PTZ00276 84 LACRAAIMEVLH-----GAAVHTKWPNDIIYAGKKIGGSLIESEGE----YLIIGIGMNIEVAPPVTDAGRESTMVNEIA 154 (245)
T ss_pred HHHHHHHHHhcc-----CCceEEEcCCeeEECCcEEEEEEEcccCC----EEEEEEEEeeCCCCCCCccccccccHHHHH
Confidence 999999998742 35799999999999999999999997642 68999999998632 2 22222211
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH---HHhccCCCEEEEEECCccEEEEeeEEEEEeCCCc
Q 017728 257 RKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYY---KTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSG 333 (367)
Q Consensus 257 ~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~---~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G 333 (367)
... ....++|++|++.++++|+.+|..+. .++..+.+.|. .++..+++.+. ..++. .+ |++.|||++|
T Consensus 155 ~~~--~~~~~~r~~l~~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~--G~~~gId~~G 225 (245)
T PTZ00276 155 EDL--GVKSVTPQDLAEAVWKHFFDICSDPE-LTREILIESFDAAMDKSLKLHKRTP--TGRDP--EE--LTALSLNEWG 225 (245)
T ss_pred Hhh--CCCCCCHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHhhhhccCeEEE--cCCcE--EE--EEEEEECCCC
Confidence 111 23568999999999999988876532 23457778776 66666776442 23222 23 8999999999
Q ss_pred eEEEEeCCCcEEEEcCC
Q 017728 334 YLLAIGDDNQMCELHPD 350 (367)
Q Consensus 334 ~Llv~~~dG~~~~l~pd 350 (367)
+|+|++++|.++.+.+|
T Consensus 226 ~Lvv~~~~G~~~~~~~~ 242 (245)
T PTZ00276 226 HLIVRRPDGTEEDLMAE 242 (245)
T ss_pred eEEEEECCCCEEEEEhh
Confidence 99999999999888775
No 10
>PRK08477 biotin--protein ligase; Provisional
Probab=100.00 E-value=1.8e-48 Score=360.49 Aligned_cols=198 Identities=24% Similarity=0.369 Sum_probs=162.9
Q ss_pred eEEEccCCCCHHHHHHHccC-C-CCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeeccCC-CCcc--hhHHHHHHH
Q 017728 111 LLIWSPRLPSTHDVVSHNFC-E-LPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDG-RVVP--LLQYVASLA 185 (367)
Q Consensus 111 ~l~~~~~v~STN~~a~~~~~-~-~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~-~~l~--~ls~~~glA 185 (367)
.++++++++|||++++++.. + .+++++|+|++||+||||+||+|.||+|+||||+++++... ...+ .+++++|+|
T Consensus 2 ~i~~~~~v~STn~~~~~~~~~~~~~~~~vvvA~~QTaGRGR~gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~~lsl~~~~a 81 (211)
T PRK08477 2 EIRVFESLDSTQTYLIEKIKNGELKAPFAIVAKEQTAGIGSRGNSWEGKKGNLFFSFALKESDLPKDLPLQSSSIYFGFL 81 (211)
T ss_pred eEEEecCCCCHHHHHHHHHHcCCCCCCEEEEECccCCCCCCCCCcccCCCCCeEEEeecCCCcchhhhhhHHHHHHHHHH
Confidence 47889999999999998764 2 47899999999999999999999999999999999987632 3333 378999999
Q ss_pred HHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeecCCCCCCcchHHHHHHhhhcCCCC
Q 017728 186 LTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQ 265 (367)
Q Consensus 186 V~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~~~p~t~l~~~l~~~~~~~~~ 265 (367)
|+++|+++ | .+++||||||||++|||+||||+|...+ .+||||||||++.++. . .. .+..
T Consensus 82 v~~~l~~~----~---~~~~iKWPNDI~~~~kKi~GIL~E~~~~----~vviGiGiNv~~~p~~--~----~~---l~~~ 141 (211)
T PRK08477 82 LKEVLKEL----G---SKVWLKWPNDLYLDDKKIGGVITNKIKN----FIVCGIGLNLKFSPKN--F----AC---LDIE 141 (211)
T ss_pred HHHHHHHh----C---CCeEEcCCCeeEECCcEEEEEEEeecCC----eEEEEEEEeeCCCCCc--c----cc---ccCc
Confidence 99999984 2 4799999999999999999999997532 5899999999864321 1 11 1357
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 266 FRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 266 ~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
++|++|++.++++|+..|. ...+.++|+ ..+..|+.|+|..+++ .++ |++.|||++|+|+|+.
T Consensus 142 ~~~~~ll~~l~~~~~~~~~------~~~~~~~~~-~~~~~~~~v~v~~~~~--~~~--g~a~~I~~~G~L~v~~ 204 (211)
T PRK08477 142 ISDDLLLEGFLQKIEKKIL------WKQIFSKYK-LEFEKSKSFSFHIDGK--LVS--LKDAELLEDGSILING 204 (211)
T ss_pred CCHHHHHHHHHHHHHHHHh------HHHHHHHHH-HHHHcCCEEEEEECCE--EEE--EEEeeECCCCeEEECC
Confidence 8999999999999999873 245667888 6668999999987653 344 8999999999999963
No 11
>PRK05935 biotin--protein ligase; Provisional
Probab=100.00 E-value=2.9e-41 Score=307.84 Aligned_cols=161 Identities=23% Similarity=0.296 Sum_probs=127.5
Q ss_pred EEccCCCCHHHHHHHccC-C-CCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeeccCC-CCcchhHHHHHHHHHHH
Q 017728 113 IWSPRLPSTHDVVSHNFC-E-LPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDG-RVVPLLQYVASLALTEA 189 (367)
Q Consensus 113 ~~~~~v~STN~~a~~~~~-~-~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~-~~l~~ls~~~glAV~~a 189 (367)
+++++++|||+++++++. + .+++++|+|++||+||||+||+|.||+|+||||++++++.. .....+..++++|++++
T Consensus 6 ~~~~~v~STN~~~~~~~~~~~~~~~~vv~A~~QTaGRGR~GR~W~Sp~G~L~~Si~l~~~~~~~~~~~~~~l~~~av~~~ 85 (190)
T PRK05935 6 YEIAETPSTNTTAKEGMHLWDPYALTVISTREQTAGKGKFGKSWHSSDQDLLASFCFFITVLNIDVSLLFRLGTEAVMRL 85 (190)
T ss_pred EeCCCCCcHHHHHHHHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCCCeEEEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 345899999999998763 2 34689999999999999999999999999999999975422 23345556677899999
Q ss_pred HHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeecCCCCC--------CcchHHHHHHhhhc
Q 017728 190 INYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEE--------PTTCLNAVLRKLSD 261 (367)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~~~--------p~t~l~~~l~~~~~ 261 (367)
++.+. ..+++||||||||+++||+||||+|....++...+||||||||++.. +.+++...
T Consensus 86 l~~~~------~~~~~iKWPNDI~~~~kKi~GILiE~~~~~~~~~vVIGIGINv~~~~~~~~~~~~~atsL~~~------ 153 (190)
T PRK05935 86 GEDLG------ITEAVIKWPNDVLVHGEKLCGVLCETIPVKGGLGVILGIGVNGNTTKDELLGIDQPATSLQEL------ 153 (190)
T ss_pred HHHhC------CccccccCCCeEEECCcEEEEEEEeccccCCCcEEEEEEeEecCCCchhccccCCCcccHHHh------
Confidence 98752 13699999999999999999999998765555579999999998641 22333221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 017728 262 STYQFRREDVIAAFFNKFETFYDT 285 (367)
Q Consensus 262 ~~~~~~r~~Ll~~ll~~~~~~~~~ 285 (367)
.+..++|+++++.++++|+.+|..
T Consensus 154 ~~~~~~~~~l~~~l~~~l~~~~~~ 177 (190)
T PRK05935 154 LGHPIDLEEQRERLIKHIKHVLIQ 177 (190)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999887754
No 12
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.86 E-value=3.5e-22 Score=168.47 Aligned_cols=119 Identities=39% Similarity=0.573 Sum_probs=90.3
Q ss_pred ccCCCCH-HHHHHHccCCCCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeeccC----CCCcchhHHHHHHHHHHH
Q 017728 115 SPRLPST-HDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMED----GRVVPLLQYVASLALTEA 189 (367)
Q Consensus 115 ~~~v~ST-N~~a~~~~~~~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~----~~~l~~ls~~~glAV~~a 189 (367)
.++++|| .+...+ ..+.+.+++|++||+|| |.|.||+|+|+||++++++. ...++.+...+++++.++
T Consensus 2 g~~~~st~~~~~~~---~~~~~~v~v~~rqtgG~----~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T PF03099_consen 2 GYFQDSTKEELNQE---ELKEGGVPVARRQTGGR----RVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVLEA 74 (125)
T ss_dssp ETTBSHHHHHHHHH---HHHCTTEEEEEESSSSB----EEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHHHH
T ss_pred cCeECHHHHHHHHh---cCccCCEEEEEEeeCCc----ceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHHHH
Confidence 5688999 333332 34566789999999999 99999999999999998753 234555667778888888
Q ss_pred HHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeec
Q 017728 190 INYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLN 242 (367)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGIN 242 (367)
+..+. .+.++..+.+||||||++++|||||||+|.........++||||+|
T Consensus 75 l~~~~--~~~~~~~~~~kw~nDi~~~~kKi~Gil~~~~~~~~~~~~~igig~N 125 (125)
T PF03099_consen 75 LGEFG--PGEPGIDCFIKWPNDIYVNGKKIAGILQERRRGGILHHGSIGIGIN 125 (125)
T ss_dssp HHHTT--HTTTTSSEEEETTTEEEETTEEEEEEEEEEETTEEEEEEEEESSEE
T ss_pred hhhhc--cccCCCceEEeCCCCccCCCcEEEEEeEeeeCCcEEEEEEEEEecC
Confidence 85221 0223578999999999999999999999997633334677888887
No 13
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=98.42 E-value=8.3e-07 Score=63.46 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=41.4
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCCcee
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSS 354 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg~Sf 354 (367)
++||+|++..+++. ++ |++.|||++|+|+|++++|+++.+++++.++
T Consensus 1 ~lG~~V~v~~~~~~--~~--G~~~gId~~G~L~v~~~~g~~~~i~sGdv~~ 47 (48)
T PF02237_consen 1 TLGQEVRVETGDGE--IE--GIAEGIDDDGALLVRTEDGSIRTISSGDVSL 47 (48)
T ss_dssp STTSEEEEEETSCE--EE--EEEEEEETTSEEEEEETTEEEEEESSSEEEE
T ss_pred CCCCEEEEEECCeE--EE--EEEEEECCCCEEEEEECCCCEEEEEEEEEEe
Confidence 57999999996653 33 8999999999999999999999999998875
No 14
>PRK14348 lipoate-protein ligase B; Provisional
Probab=93.30 E-value=1.4 Score=41.58 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=73.9
Q ss_pred cCCCCccccCCCCceeeeeeeccCCCCcchhHHH--HHHHHHHHHHHhhhcCCCCCCCceeEecCcEEEC-----CeEeE
Q 017728 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYV--ASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLN-----GIKVG 220 (367)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~--~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~-----gkKvg 220 (367)
.|.|...+--||.|..=.++..... ....-.|+ .--++.++++++ |++ ..+.+..-.||++ ++|||
T Consensus 79 ~RGG~iTyHGPGQlV~Ypil~L~~~-~~~v~~yv~~lE~~vI~~l~~~----gi~--~~~~~~~~GVWv~~~~~~~~KIa 151 (221)
T PRK14348 79 DRGGDITYHGPGQLVCYPILNLEEF-GLGLKEYVHLLEEAVIRVCASY----GVV--AGRLEKATGVWLEGDTSRARKIC 151 (221)
T ss_pred CCCCceEEECCCeEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHc----CCc--eeecCCCCCEEecCCCCCCCcEE
Confidence 5788888888998666556654321 12222222 233555666554 542 3467788899998 58999
Q ss_pred EEeeeeeccCCcceEEEEeeecCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017728 221 GILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (367)
Q Consensus 221 GILiE~~~~~~~~~vVIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (367)
.|=+-... ..-.=|+.|||+++. +.||+... .+..++.+++...+.++|.+.+
T Consensus 152 aIGv~v~r----~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~------~g~~~~~~~v~~~l~~~f~~~~ 218 (221)
T PRK14348 152 AIGVRSSH----YVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQE------LGHSIDMAEVKERLGRELLAAL 218 (221)
T ss_pred EEeEEecc----ceeecceEEEecCChHHhccCccCCCCCCcEEeeHHH------hCCCCCHHHHHHHHHHHHHHHH
Confidence 87654321 112359999998741 23555332 2456788888888888887654
No 15
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=91.95 E-value=0.41 Score=47.49 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=45.5
Q ss_pred EeCcccCCccCCCCccccCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeE
Q 017728 139 VADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIK 218 (367)
Q Consensus 139 iA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkK 218 (367)
++.+.|.| ..=+-..|++.||++.+.... ..... ....-.|++||+++ | +++.+.=+|||.++|||
T Consensus 67 vvRR~sGG-----GaVyhD~g~l~~s~i~~~~~~-~~~~~-~~~~~~i~~aL~~l----G---i~a~~~~rnDl~v~gkK 132 (324)
T TIGR00545 67 LFRRFSGG-----GAVFHDLGNICFSFITPKDGK-EFENA-KIFTRNVIKALNSL----G---VEAELSGRNDLVVDGRK 132 (324)
T ss_pred EEEECCCC-----ceEEEcCCceEEEEEEcCCcc-chhhH-HHHHHHHHHHHHHh----C---CCeEECCCceEEECCEE
Confidence 44555543 444556689999999875321 11111 23344567777765 4 45666678999999999
Q ss_pred eEEE
Q 017728 219 VGGI 222 (367)
Q Consensus 219 vgGI 222 (367)
++|.
T Consensus 133 isGs 136 (324)
T TIGR00545 133 ISGS 136 (324)
T ss_pred EEEE
Confidence 9997
No 16
>PRK14342 lipoate-protein ligase B; Provisional
Probab=88.20 E-value=9.9 Score=35.65 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=68.8
Q ss_pred cCCCCccccCCCCceeeeeeeccCCCCcchhHHHH--HHHHHHHHHHhhhcCCCCCCCceeE-ecCcEEECCeEeEEEee
Q 017728 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVA--SLALTEAINYVCSRDGLPCLDIKIK-WPNDLYLNGIKVGGILC 224 (367)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~--glAV~~aL~~~~~~~G~~~~~v~IK-WPNDI~v~gkKvgGILi 224 (367)
.|.|...+--||.|.+=.++..... ....-.|+. --++.++++++ |++ ..-+ =.=-||++++|||-|=+
T Consensus 70 ~RGG~iTyHGPGQLV~YpIl~L~~~-~~~~~~yv~~lE~~vi~~l~~~----gi~---~~~~~~~~GVWv~~~KIaaIGv 141 (213)
T PRK14342 70 DRGGQVTYHGPGQLVMYVLLDLKRL-KLGVRQLVTAIEQTVINTLAEY----GIE---AHAKPDAPGVYVDGKKIASLGL 141 (213)
T ss_pred cCCCceEEECCCeEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHc----CCc---eeecCCCCcCcccCCEEEEEEE
Confidence 6788888888998665556654321 122222222 23455565554 432 2111 11256778899998876
Q ss_pred eeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017728 225 TSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (367)
Q Consensus 225 E~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (367)
-... ..-.=|+.|||+++. | .||+.+ .+..++.+++...+.++|.+.|
T Consensus 142 ~v~r----~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-------~~~~~~~~~v~~~~~~~f~~~f 203 (213)
T PRK14342 142 RIRR----GCSFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSD-------LGGPATVDEVAPRLLAELLALL 203 (213)
T ss_pred eEec----ceeecceeEecCCCchhhCcEecCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHHh
Confidence 5331 123479999999752 1 245532 1456788888888888887765
No 17
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=87.75 E-value=13 Score=33.97 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred cCCCCccccCCCCceeeeeeeccCCCCcchhHHHHH--HHHHHHHHHhhhcCCCCCCCceeEecC--cEEECCeEeEEEe
Q 017728 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVAS--LALTEAINYVCSRDGLPCLDIKIKWPN--DLYLNGIKVGGIL 223 (367)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~g--lAV~~aL~~~~~~~G~~~~~v~IKWPN--DI~v~gkKvgGIL 223 (367)
.|.|-.++--||.|.+=.++..... ....-.++-. -++.++++++ |+ ... ..|. -||++++|||-|=
T Consensus 50 ~RGG~iTyHGPGQLV~YpIl~L~~~-~~~v~~yv~~lE~~~I~~l~~~----gi---~a~-~~~~~~GVWv~~~KIasIG 120 (184)
T TIGR00214 50 ERGGQVTYHGPGQQVMYVILDLKRF-QLDVRWLVTQLEQTVIITLAEL----GI---EGE-PIADATGVWVEGKKVASLG 120 (184)
T ss_pred CCCCeeEEECCCeEEEEEEEEchhc-CCCHHHHHHHHHHHHHHHHHHc----CC---ceE-EcCCCCeEEecCCEEEEEE
Confidence 4778888888898766666665421 2233333333 3566666654 43 221 2232 4678899999876
Q ss_pred eeeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017728 224 CTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (367)
Q Consensus 224 iE~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (367)
+-... ..-.=|+.|||+.+. | .||+.+. +..++.+++...+.++|.+.|
T Consensus 121 v~v~r----~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~vTSl~~~-------~~~~~~~~v~~~~~~~f~~~f 183 (184)
T TIGR00214 121 IRVRR----GCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQF-------LPGATVENVAPLLIKAFAELL 183 (184)
T ss_pred EEEec----cEeecceEEEcCCCchHhccEEcCCCCCCcEeeHHHH-------cCCCCHHHHHHHHHHHHHHHh
Confidence 65321 123479999998752 1 2444321 246778888888888887654
No 18
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=87.17 E-value=1.4 Score=41.93 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=49.6
Q ss_pred EEEeCcccCCccCCCCccccCCCCceeeeeeeccCCC-CcchhHHHHHHHHHHHHHHhhhcCCCCCCC-ceeEecCcEEE
Q 017728 137 VCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGR-VVPLLQYVASLALTEAINYVCSRDGLPCLD-IKIKWPNDLYL 214 (367)
Q Consensus 137 vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~~-~l~~ls~~~glAV~~aL~~~~~~~G~~~~~-v~IKWPNDI~v 214 (367)
+-++.++|.|.. =+-..|++.||++.+-+... ....+.-...-.+.++++.+ | ++ ....=+|||.+
T Consensus 66 i~vvRR~sGGGa-----V~hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g---v~~~~~~~~nDl~v 133 (248)
T COG0095 66 IPVVRRPSGGGA-----VFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRAL----G---VEGAECPGRNDLVV 133 (248)
T ss_pred CcEEEEcCCCce-----EEecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHHHHc----C---CCeeccCCCcceeE
Confidence 567788887754 34556699999999765321 11122223455667777665 3 34 56667799999
Q ss_pred CCeEeEEE
Q 017728 215 NGIKVGGI 222 (367)
Q Consensus 215 ~gkKvgGI 222 (367)
+||||+|+
T Consensus 134 ~gkKisG~ 141 (248)
T COG0095 134 DGKKISGS 141 (248)
T ss_pred cCcEEeeH
Confidence 99999996
No 19
>PRK14344 lipoate-protein ligase B; Provisional
Probab=84.61 E-value=22 Score=33.62 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=68.4
Q ss_pred cCCCCccccCCCCceeeeeeeccCCCCcchhHHHH--HHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeee
Q 017728 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVA--SLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCT 225 (367)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~--glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE 225 (367)
.|.|...+--||.|..=.++..... ....-.++. --++.++++++ |++. .+.+=---||++++|||-|=+-
T Consensus 88 ~RGG~iTyHGPGQLV~YpIl~L~~~-~~~v~~yv~~lE~~ii~~l~~~----gi~~--~~~~~~~GVWv~~~KIaaIGv~ 160 (223)
T PRK14344 88 DRGGEVTHHMPGQLVTYLVLDLRRF-NKDLNWYLRQLEQVLIDVLADL----GIDG--ERLDGLTGVWIGNKKVASIGIG 160 (223)
T ss_pred CCCceeeEECCCcEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHc----CCce--eecCCCCcEEcCCCeEEEEeEe
Confidence 5778888888998766666655421 111222222 23445555543 4321 1111113567788999988665
Q ss_pred eeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017728 226 STYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (367)
Q Consensus 226 ~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (367)
... ....=|+.|||+++. | .||+... +..++.+++...+.++|.+.|
T Consensus 161 v~r----~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~-------~~~~~~~~v~~~l~~~f~~~f 221 (223)
T PRK14344 161 CRR----WITQHGFSLNVDCDLEGFNKIVPCGLEGCQVGRLSDW-------IPGLNIKEVKPLLKKSLQERF 221 (223)
T ss_pred Eec----ceeecceEEecCCCccccCcEEcCCCCCCcEeeHHHH-------cCCCCHHHHHHHHHHHHHHHh
Confidence 432 123479999999752 1 2444321 346788888888888887654
No 20
>PRK14345 lipoate-protein ligase B; Provisional
Probab=84.45 E-value=21 Score=33.98 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=69.7
Q ss_pred cCCCCccccCCCCceeeeeeeccCCCCcchhHHHH--HHHHHHHHHHhhhcCCCCCCCceeEecCcEEEC------CeEe
Q 017728 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVA--SLALTEAINYVCSRDGLPCLDIKIKWPNDLYLN------GIKV 219 (367)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~--glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~------gkKv 219 (367)
.|.|-..+--||.|..=.++..... ...-.|+. --++.++++++ |++. .+.+=.=-||++ ++||
T Consensus 76 dRGG~iTyHGPGQLV~YpIldL~~~--~~v~~yv~~LE~~vI~~l~~~----gi~a--~~~~~~~GVWv~~~~~~~~~KI 147 (234)
T PRK14345 76 DRGGKITWHGPGQLVGYPIIKLAEP--LDVVDYVRRLEEALIAVCADL----GLNA--GRVDGRSGVWVPADGGRPDRKI 147 (234)
T ss_pred cCCCceeEeCCCeEEEEEEEecCCC--CCHHHHHHHHHHHHHHHHHHc----CCce--eecCCCCeEEECCCCCCCcceE
Confidence 6788888888898666556655431 22223333 33566666654 4321 111111245665 6999
Q ss_pred EEEeeeeeccCCcceEEEEeeecCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017728 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (367)
Q Consensus 220 gGILiE~~~~~~~~~vVIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (367)
|-|=+-... ..-.=|+.|||+.+. ..||+... .+..++.+++...+.++|.+.|.
T Consensus 148 aaIGv~v~r----~vT~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~------~g~~~~~~~v~~~l~~~f~~~f~ 216 (234)
T PRK14345 148 AAIGIRVSR----GVTMHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAE------LGRTVTVAEVVDPVAAALCDALD 216 (234)
T ss_pred EEEEeeecc----ceeecceEEEeCCChHHhceEEeCCCCCCcEEehhHh------hCCCCCHHHHHHHHHHHHHHHhC
Confidence 987664321 123479999999752 13455332 24567888888888888877654
No 21
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=81.22 E-value=4.8 Score=40.27 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=43.6
Q ss_pred EeCcccCCccCCCCccccCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEEC---
Q 017728 139 VADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLN--- 215 (367)
Q Consensus 139 iA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~--- 215 (367)
++++.|.| +.=+-..|++.||++.+.+. ... . ...-.|++||+++ | +++.+.=.|||.++
T Consensus 68 vvRR~SGG-----GAVyhD~Gnl~~s~i~~~~~---~~~-~-~~~~~ii~aL~~l----G---i~a~~~~rnDi~v~~~~ 130 (338)
T PRK03822 68 LARRSSGG-----GAVFHDLGNTCFTFMAGKPE---YDK-T-ISTSIVLNALNSL----G---VSAEASGRNDLVVKTAE 130 (338)
T ss_pred EEEECCCC-----ceEEEcCCCcEEEEEeCCCc---cCH-H-HHHHHHHHHHHHc----C---CceeECCCccEEEecCC
Confidence 34555544 34444568999999875322 111 1 1234677888875 4 56778888999995
Q ss_pred -CeEeEEE
Q 017728 216 -GIKVGGI 222 (367)
Q Consensus 216 -gkKvgGI 222 (367)
|+||+|-
T Consensus 131 g~kKisGs 138 (338)
T PRK03822 131 GDRKVSGS 138 (338)
T ss_pred CCcEEEEE
Confidence 6999993
No 22
>PRK14343 lipoate-protein ligase B; Provisional
Probab=80.98 E-value=31 Score=32.91 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=69.5
Q ss_pred cCCCCccccCCCCceeeeeeeccCCCCcchhHHH--HHHHHHHHHHHhhhcCCCCCCCcee-EecCcEEEC-----CeEe
Q 017728 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYV--ASLALTEAINYVCSRDGLPCLDIKI-KWPNDLYLN-----GIKV 219 (367)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~--~glAV~~aL~~~~~~~G~~~~~v~I-KWPNDI~v~-----gkKv 219 (367)
.|.|...+--||.|..=.++..... ....-.++ .--++.++++++ |+ +..- +=.--||++ ++||
T Consensus 80 dRGG~iTyHGPGQLV~YpIl~L~~~-~~~v~~yv~~lE~~vI~~l~~~----gi---~~~~~~~~~GVwv~~~~~~~~KI 151 (235)
T PRK14343 80 DRGGQITYHGPGQVVAYLLLDLRRR-KLMVRELVTRIEQAVIDTLAAY----NL---ASERKAGAPGIYVASGPHQGAKI 151 (235)
T ss_pred CCCCceeEeCCCeEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHc----CC---ceeecCCCCeEEEeCCCCCCCeE
Confidence 6888888888898666556654321 12222233 233566666654 43 2211 111346666 8999
Q ss_pred EEEeeeeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017728 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (367)
Q Consensus 220 gGILiE~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (367)
|-|=+-... ..-.=|+.|||+++. | .|++.+ .+..++.+++...+.++|.+.|.
T Consensus 152 aaIGv~v~r----~vT~HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~~-------lg~~~~~~~v~~~l~~~f~~~f~ 219 (235)
T PRK14343 152 AALGLKIRN----GCSYHGLSLNVKMDLRPFLAINPCGYAGLETVDMAS-------LGVAADWADVAQTLARRLIANLD 219 (235)
T ss_pred EEEeeeeec----ceeecccEEEeCCCchhhCcEECCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHHhC
Confidence 987664321 123479999999741 1 244422 24577888888888888877653
No 23
>PRK14349 lipoate-protein ligase B; Provisional
Probab=77.13 E-value=57 Score=30.80 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=69.4
Q ss_pred cCCCCccccCCCCceeeeeeeccCCCCcchhHHHHH--HHHHHHHHHhhhcCCCCCCCcee-EecCcEEEC-----CeEe
Q 017728 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVAS--LALTEAINYVCSRDGLPCLDIKI-KWPNDLYLN-----GIKV 219 (367)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~g--lAV~~aL~~~~~~~G~~~~~v~I-KWPNDI~v~-----gkKv 219 (367)
.|.|...+--||.|..=.++..... ....-.++.. -++.++++++ |++. ..+. +-| -||++ .+||
T Consensus 65 ~RGG~iTyHGPGQLV~YpIldL~~~-~~~vr~yv~~LE~~~I~~l~~~----gi~~-a~~~~~~~-GVWv~~~~~~~~KI 137 (220)
T PRK14349 65 DRGGQVTYHGPGQVLAYTLFDLRRA-GLYVREYVDMLEQATLATLREL----GLEQ-ACRKPGAP-GIYVPQPGGELAKI 137 (220)
T ss_pred cCCcceEEeCCCcEEEEEEEEcccC-CCCHHHHHHHHHHHHHHHHHHh----CCcc-eeecCCCC-cEEeCCCCCCCceE
Confidence 5778888888898666556655421 1222333333 3566666664 3310 0111 112 36665 4899
Q ss_pred EEEeeeeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017728 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (367)
Q Consensus 220 gGILiE~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (367)
|-|=+-... ..-.=|+.|||+++. | .||+.+ .+..++.+++...+.++|.+.|.
T Consensus 138 aaiGv~v~r----~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSl~~-------~g~~~~~~~v~~~l~~~f~~~f~ 205 (220)
T PRK14349 138 AALGVKVRN----GYAYHGLALNIDMDLSPFLGINPCGYEGLRTVDLAA-------CGVRTSVERAGELLAAQLARAHG 205 (220)
T ss_pred EEEeeEEec----ceeecceeEEecCCchhhCcEEcCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHHhC
Confidence 987665321 123479999999751 1 245432 24578889998889888877663
No 24
>PRK14341 lipoate-protein ligase B; Provisional
Probab=76.16 E-value=65 Score=30.22 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=63.1
Q ss_pred CCCCccccCCCCceeeeeeeccCCCCcchhHHH--HHHHHHHHHHHhhhcCCCCCCCceeEecC--cEEECC--------
Q 017728 149 RSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYV--ASLALTEAINYVCSRDGLPCLDIKIKWPN--DLYLNG-------- 216 (367)
Q Consensus 149 R~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~--~glAV~~aL~~~~~~~G~~~~~v~IKWPN--DI~v~g-------- 216 (367)
|.|-.=+--||.|..=.++..... ....-.++ .--++.++++++ |+ +. ..-|+ -||+++
T Consensus 71 RGG~iTyHGPGQlV~YpIl~L~~~-~~~v~~yv~~lE~~iI~~l~~~----gi---~~-~~~~~~~GVWv~~~~~~~~~~ 141 (213)
T PRK14341 71 RGGQYTYHGPGQRVAYVMLDLKRR-RRDVRAFVAALEEWIIATLAAF----NI---RG-ERREDRVGVWVRRPDKGSGAE 141 (213)
T ss_pred CCcceeEECCCeEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHh----CC---ce-EEcCCCCeEEecCccCCCCCC
Confidence 455533445676554445544321 12222222 223455555554 43 22 12244 678873
Q ss_pred eEeEEEeeeeeccCCcceEEEEeeecCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHH
Q 017728 217 IKVGGILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETF 282 (367)
Q Consensus 217 kKvgGILiE~~~~~~~~~vVIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~ 282 (367)
+|||-|=+-... ....=|+.|||+++. ..||+.. .+..++.+++...++++|++.
T Consensus 142 ~KIaaIGv~v~r----~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~-------~g~~~~~~~v~~~l~~~f~~~ 210 (213)
T PRK14341 142 DKIAAIGVRLRR----WVSFHGISINVEPDLSHFSGIVPCGISEHGVTSLVD-------LGLPVTMDDVDAALKKAFEKV 210 (213)
T ss_pred CcEEEEeeeEec----ceeccceEEEecCChhhhCcEecCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHH
Confidence 799987665321 123479999998741 2355533 245678888888888888765
Q ss_pred H
Q 017728 283 Y 283 (367)
Q Consensus 283 ~ 283 (367)
|
T Consensus 211 f 211 (213)
T PRK14341 211 F 211 (213)
T ss_pred h
Confidence 4
No 25
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=71.28 E-value=85 Score=29.62 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=63.4
Q ss_pred cCCCCccccCCCCceeeeeeeccCCCCcchhHHHHHH--HHHHHHHHhhhcCCCCCCCceeEecCcEEECC-eEeEEEee
Q 017728 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASL--ALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILC 224 (367)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~gl--AV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~g-kKvgGILi 224 (367)
+|.|..=+--||.+-.=.++..... +...-.++.++ ||.++|.++ |+. .-+.+==--||+++ +|||-|=+
T Consensus 76 ~RGGqvTyHGPGQ~V~Y~ildLkr~-~~~vr~~V~~LEqavI~tLa~~----~i~--~~~~~~~~GVwV~~~~KIAaiGi 148 (221)
T COG0321 76 DRGGQVTYHGPGQLVAYPILDLKRP-KLDVREYVRALEQAVINTLAEY----GIE--AERRPDRPGVWVEEERKIAAIGI 148 (221)
T ss_pred cCCceeEEeCCCcEEEEEEEecccc-cccHHHHHHHHHHHHHHHHHHc----CCc--ccccCCCCeEEecCCceEEEEEE
Confidence 4556543444565433344433221 11123344433 677777665 331 11111112367775 99997766
Q ss_pred eeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017728 225 TSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (367)
Q Consensus 225 E~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (367)
-... ....=|+.|||+++. | .|++.+. +..++-+++-..+.++|.+.+.
T Consensus 149 rirr----~vs~HGlALNv~~DL~~F~~I~PCG~~~~~~tsl~d~-------~~~v~~~~V~~~l~~~~~~~l~ 211 (221)
T COG0321 149 RIRR----GVTFHGLALNVNMDLSPFNRIVPCGYAGMEVTSLSDL-------GPPVTVDEVAKALVAAFAKLLG 211 (221)
T ss_pred EEec----ccceeeeEEeccCCchhccceeccccCCCceeEHHHh-------CCCCcHHHHHHHHHHHHHHHhC
Confidence 4321 123479999999752 1 2344322 3457888888888888877654
No 26
>PF14563 DUF4444: Domain of unknown function (DUF4444); PDB: 3BFM_A.
Probab=67.40 E-value=11 Score=26.26 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=13.4
Q ss_pred EEEEEeCCCceEEEEeCCCc
Q 017728 324 VTIQGLTSSGYLLAIGDDNQ 343 (367)
Q Consensus 324 G~i~GId~~G~Llv~~~dG~ 343 (367)
|++.|+|++..++++++++.
T Consensus 12 GtFlGvDE~FGmLLr~~~~T 31 (42)
T PF14563_consen 12 GTFLGVDEDFGMLLRDDDTT 31 (42)
T ss_dssp EEEEEE-TT--EEEE-SS-E
T ss_pred eeEEeeccccceEEEeCCcc
Confidence 89999999999999977644
No 27
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=66.83 E-value=11 Score=40.21 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=40.7
Q ss_pred CCCccccCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEE----CCeEeEE
Q 017728 150 SKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL----NGIKVGG 221 (367)
Q Consensus 150 ~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v----~gkKvgG 221 (367)
.|..=+-..|++.||++.+... ... . ...-.|++||+++ | +++.+.=-|||.+ +|||+.|
T Consensus 298 GGGAVYHD~GNlnfSfi~~~~~---~~~-~-~~~~~Ii~aL~~L----G---I~ae~sgRNDI~v~~~~~GkKISG 361 (562)
T PRK14061 298 GGGAVFHDLGNTCFTFMAGKPE---YDK-T-ISTSIVLNALNAL----G---VSAEASGRNDLVVKTAEGDRKVSG 361 (562)
T ss_pred CCcEEEEcCCceEEEEEeCCcc---cch-H-HHHHHHHHHHHHc----C---CCeEECCCccEEEeeCCCCcEEEE
Confidence 3455566778899999875321 111 1 1134677888765 4 5677787899999 6999999
No 28
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins. In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....
Probab=66.08 E-value=18 Score=26.73 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=27.8
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|+|...++.. +. |++.++|+...|.+.+
T Consensus 6 ~~g~~V~V~l~~g~~-~~--G~L~~~D~~~Nl~L~~ 38 (67)
T PF01423_consen 6 LIGKRVRVELKNGRT-YR--GTLVSFDQFMNLVLSD 38 (67)
T ss_dssp TTTSEEEEEETTSEE-EE--EEEEEEETTEEEEEEE
T ss_pred hCCcEEEEEEeCCEE-EE--EEEEEeechheEEeee
Confidence 369999999988764 44 8999999999999975
No 29
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences. They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.
Probab=63.01 E-value=23 Score=26.65 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=27.8
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeC
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (367)
.|++|.|...++.. +. |++.++|+...|++.+.
T Consensus 9 ~~~~V~V~l~~g~~-~~--G~L~~~D~~mNlvL~~~ 41 (68)
T cd01731 9 LNKPVLVKLKGGKE-VR--GRLKSYDQHMNLVLEDA 41 (68)
T ss_pred cCCEEEEEECCCCE-EE--EEEEEECCcceEEEeeE
Confidence 68999999987765 33 89999999999999753
No 30
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=58.94 E-value=25 Score=25.97 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=27.5
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++.. +. |++.++|+...+.+.+
T Consensus 6 ~~~~~V~V~l~~g~~-~~--G~L~~~D~~~NlvL~~ 38 (67)
T smart00651 6 LIGKRVLVELKNGRE-YR--GTLKGFDQFMNLVLED 38 (67)
T ss_pred hCCcEEEEEECCCcE-EE--EEEEEECccccEEEcc
Confidence 368999999987764 33 8999999999999875
No 31
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=58.36 E-value=24 Score=27.48 Aligned_cols=33 Identities=6% Similarity=0.037 Sum_probs=28.2
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeC
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (367)
+|++|+|...++... .|++.++|..+.+++.+.
T Consensus 9 l~~~v~V~l~dgR~~---~G~l~~~D~~~NivL~~~ 41 (75)
T cd06168 9 LGRTMRIHMTDGRTL---VGVFLCTDRDCNIILGSA 41 (75)
T ss_pred cCCeEEEEEcCCeEE---EEEEEEEcCCCcEEecCc
Confidence 799999999887754 389999999999999654
No 32
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=56.98 E-value=26 Score=25.37 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=26.7
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
.|++|.|...++.. +. |++.++|+...+.+.+
T Consensus 5 ~g~~V~V~l~~g~~-~~--G~L~~~D~~~Ni~L~~ 36 (63)
T cd00600 5 VGKTVRVELKDGRV-LE--GVLVAFDKYMNLVLDD 36 (63)
T ss_pred CCCEEEEEECCCcE-EE--EEEEEECCCCCEEECC
Confidence 68999999987764 33 8999999999998864
No 33
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=56.51 E-value=24 Score=27.49 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=28.0
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
++|++|.|...++... .|++.++|....|++.+
T Consensus 8 ~l~~~V~V~l~dgR~~---~G~L~~~D~~~NlVL~~ 40 (79)
T cd01717 8 LINYRLRVTLQDGRQF---VGQFLAFDKHMNLVLSD 40 (79)
T ss_pred HcCCEEEEEECCCcEE---EEEEEEEcCccCEEcCC
Confidence 4799999999887654 38999999999999864
No 34
>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm1 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=55.13 E-value=30 Score=26.88 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=28.0
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeC
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (367)
.++++|.|...+++.. .|+..|+|+.+.|++.+.
T Consensus 10 ~l~k~v~V~l~~gr~~---~G~L~~fD~~~NlvL~d~ 43 (74)
T cd01728 10 DLDKKVVVLLRDGRKL---IGILRSFDQFANLVLQDT 43 (74)
T ss_pred hcCCEEEEEEcCCeEE---EEEEEEECCcccEEecce
Confidence 3799999999877643 389999999999999653
No 35
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=54.59 E-value=37 Score=25.50 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=26.9
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
.|++|.|+..++.. +. |++.|+|+.=.|.+.+
T Consensus 9 ~~~~V~V~Lk~g~~-~~--G~L~~~D~~mNlvL~~ 40 (67)
T cd01726 9 IGRPVVVKLNSGVD-YR--GILACLDGYMNIALEQ 40 (67)
T ss_pred CCCeEEEEECCCCE-EE--EEEEEEccceeeEEee
Confidence 79999999988764 34 8999999988888865
No 36
>PRK14346 lipoate-protein ligase B; Provisional
Probab=52.52 E-value=2.1e+02 Score=27.16 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=38.1
Q ss_pred ECCeEeEEEeeeeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 017728 214 LNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKF 279 (367)
Q Consensus 214 v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~ 279 (367)
.+.+|||-|=+-... ..-.=|+.|||+++. | .|++.. .+..++.+++...+.++|
T Consensus 156 ~~~~KIaAiGv~v~r----~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSL~~-------lg~~~~~~~v~~~l~~~f 224 (230)
T PRK14346 156 RGLGKIAALGIKVSR----HCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLST-------IGVQTTWDEAASVLGQQL 224 (230)
T ss_pred cccceEEEEeeEEec----ceeecceeEEcCCChhhhCcEECCCCCCCceeeHHH-------hCCCCCHHHHHHHHHHHH
Confidence 345799977665321 123479999999751 1 244431 256788888888888888
Q ss_pred HHHH
Q 017728 280 ETFY 283 (367)
Q Consensus 280 ~~~~ 283 (367)
.+.+
T Consensus 225 ~~~~ 228 (230)
T PRK14346 225 ARYL 228 (230)
T ss_pred HHHh
Confidence 7654
No 37
>PRK00737 small nuclear ribonucleoprotein; Provisional
Probab=52.40 E-value=43 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=27.5
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeC
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (367)
.|++|.|...++.. +. |++.|+|+.-.+++.+.
T Consensus 13 ~~k~V~V~lk~g~~-~~--G~L~~~D~~mNlvL~d~ 45 (72)
T PRK00737 13 LNSPVLVRLKGGRE-FR--GELQGYDIHMNLVLDNA 45 (72)
T ss_pred CCCEEEEEECCCCE-EE--EEEEEEcccceeEEeeE
Confidence 69999999987764 33 89999999999998753
No 38
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=51.30 E-value=89 Score=23.88 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=28.2
Q ss_pred HHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeC
Q 017728 298 YYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (367)
Q Consensus 298 y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (367)
|....-++|++|.++...+. ++ |+..++.+| ++.++..
T Consensus 13 yq~lq~liG~~vvV~T~~g~--v~--G~L~~V~pD-hIvl~~~ 50 (66)
T PF10842_consen 13 YQTLQSLIGQRVVVQTTRGS--VR--GILVDVKPD-HIVLEEN 50 (66)
T ss_pred HHHHHHhcCCEEEEEEcCCc--EE--EEEEeecCC-EEEEEeC
Confidence 44445578999999987654 33 899999999 6677654
No 39
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=50.24 E-value=65 Score=29.49 Aligned_cols=74 Identities=26% Similarity=0.377 Sum_probs=39.6
Q ss_pred ceeeeeeeccCC---CCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEE
Q 017728 161 LMFSFTIQMEDG---RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSI 237 (367)
Q Consensus 161 L~fSl~l~~~~~---~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVI 237 (367)
-+.-|++.-.+. ......|-+...-+.+.|++. | .. ..+==.|||++|||+.=-..-... ...-|
T Consensus 63 dmlhFIvEhFD~~dl~~~~~rQRLlv~i~kE~L~~~----g---v~-~~R~GDDLy~~~~KLSVSIAt~s~----vS~kI 130 (183)
T PF04017_consen 63 DMLHFIVEHFDSPDLKLAYLRQRLLVAIIKEVLEEY----G---VK-LRREGDDLYVNGRKLSVSIATASP----VSTKI 130 (183)
T ss_dssp EEEEEEEEE-S---HHHHHHHHHHHHHHHHHHHHTT----T------EEEETTEEEETTEE-EEEEEEEET----TEEEE
T ss_pred cceEEEEeeCCCCcHHHHHHHHHHHHHHHHHHHHhc----C---Cc-eeecccceeECCCEEEEEEEecCc----chheE
Confidence 455666643222 122334444545556666654 3 22 344568999999998643333222 23457
Q ss_pred EeeecCCCC
Q 017728 238 GIGLNVNNE 246 (367)
Q Consensus 238 GIGINvn~~ 246 (367)
=+||||...
T Consensus 131 H~GiNV~~~ 139 (183)
T PF04017_consen 131 HFGINVSSE 139 (183)
T ss_dssp EEEEESS-T
T ss_pred EEeEeeccc
Confidence 889999875
No 40
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=49.37 E-value=69 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=27.1
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
++++|.|...++... .|+..|.|....+++.+
T Consensus 8 l~~~V~V~l~dgr~~---~G~L~~~D~~~NlvL~~ 39 (74)
T cd01727 8 LNKTVSVITVDGRVI---VGTLKGFDQATNLILDD 39 (74)
T ss_pred cCCEEEEEECCCcEE---EEEEEEEccccCEEccc
Confidence 799999998877653 38999999999999865
No 41
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []. Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.
Probab=49.17 E-value=29 Score=26.63 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEeCCCceEEEEeCCCcEEE
Q 017728 324 VTIQGLTSSGYLLAIGDDNQMCE 346 (367)
Q Consensus 324 G~i~GId~~G~Llv~~~dG~~~~ 346 (367)
+.+.+|+++|+|.+.+++|+.++
T Consensus 7 yqli~I~~Dg~lsLMde~get~e 29 (69)
T PF01287_consen 7 YQLIDIDGDGFLSLMDEDGETRE 29 (69)
T ss_dssp EEEEEEETTTEEEEEETTS-EEE
T ss_pred EEEEEEccCcEEEEEcCCCCeec
Confidence 67999999999999999999877
No 42
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.
Probab=48.30 E-value=58 Score=24.55 Aligned_cols=33 Identities=24% Similarity=0.102 Sum_probs=27.3
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|+..++... .|++.++|+.=.+.+.+
T Consensus 9 ~~g~~V~V~Lk~g~~~---~G~L~~~D~~mNi~L~~ 41 (68)
T cd01722 9 LTGKPVIVKLKWGMEY---KGTLVSVDSYMNLQLAN 41 (68)
T ss_pred cCCCEEEEEECCCcEE---EEEEEEECCCEEEEEee
Confidence 3799999999887653 38999999988888864
No 43
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=48.08 E-value=1.2e+02 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=32.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCCcee
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSS 354 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg~Sf 354 (367)
..|+.|.|+..++.. +. |++.++|..-.+.+++. .+..++|...
T Consensus 8 ~~g~~V~VeLk~g~~-~~--G~L~~~D~~MNl~L~~~----~~~~~~g~~~ 51 (70)
T cd01721 8 AEGHIVTVELKTGEV-YR--GKLIEAEDNMNCQLKDV----TVTARDGRVS 51 (70)
T ss_pred CCCCEEEEEECCCcE-EE--EEEEEEcCCceeEEEEE----EEECCCCcEe
Confidence 479999999988764 44 89999999988888753 2345666543
No 44
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=47.79 E-value=45 Score=25.60 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=27.2
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
++|++|.|...++.. + .|+..|+|+.-.|++.+
T Consensus 8 ~i~k~V~V~L~~g~~-~--~G~L~~~D~~mNlvL~~ 40 (72)
T cd01719 8 YMDKKLSLKLNGNRK-V--SGILRGFDPFMNLVLDD 40 (72)
T ss_pred hCCCeEEEEECCCeE-E--EEEEEEEcccccEEecc
Confidence 379999999887754 3 38999999999998864
No 45
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=46.50 E-value=1.2e+02 Score=23.72 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=34.2
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCCceee
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSST 355 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg~Sfd 355 (367)
..|+.|.|+..++.. +. |++.++|+.=.+.+.+. ..+.+++....
T Consensus 17 l~g~~V~VeLKng~~-~~--G~L~~vD~~MNl~L~~~----~~~~~~~~~~~ 61 (78)
T cd01733 17 LQGKVVTVELRNETT-VT--GRIASVDAFMNIRLAKV----TIIDRNGKQVQ 61 (78)
T ss_pred CCCCEEEEEECCCCE-EE--EEEEEEcCCceeEEEEE----EEEcCCCceeE
Confidence 379999999988764 44 89999999988888753 25567766553
No 46
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=45.61 E-value=89 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=30.4
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCC
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDG 351 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg 351 (367)
.+++|.|...++.. +. |+++|+|+.=.|++.+. +.+...|++
T Consensus 12 ~~~~V~V~l~~gr~-~~--G~L~g~D~~mNlvL~da--~E~~~~~~~ 53 (76)
T cd01732 12 IGSRIWIVMKSDKE-FV--GTLLGFDDYVNMVLEDV--TEYEITPEG 53 (76)
T ss_pred CCCEEEEEECCCeE-EE--EEEEEeccceEEEEccE--EEEEEcCCC
Confidence 58999999887764 33 89999999988888643 233334554
No 47
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=44.12 E-value=1.4e+02 Score=23.05 Aligned_cols=43 Identities=12% Similarity=0.032 Sum_probs=31.8
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCCcee
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSS 354 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg~Sf 354 (367)
.|++|.|+..++.. +. |++.++|+.=.+.+.+. .+..++|..+
T Consensus 10 ~g~~V~VeLkng~~-~~--G~L~~~D~~mNi~L~~~----~~~~~~g~~~ 52 (76)
T cd01723 10 QNHPMLVELKNGET-YN--GHLVNCDNWMNIHLREV----ICTSKDGDKF 52 (76)
T ss_pred CCCEEEEEECCCCE-EE--EEEEEEcCCCceEEEeE----EEECCCCcEe
Confidence 79999999988765 33 89999999888887642 3455666543
No 48
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=43.77 E-value=52 Score=25.88 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=27.4
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
++|++|.|...++... .|+..|+|....|++.+
T Consensus 10 ~i~k~V~V~l~~gr~~---~G~L~~~D~~mNlvL~~ 42 (81)
T cd01729 10 YVDKKIRVKFQGGREV---TGILKGYDQLLNLVLDD 42 (81)
T ss_pred hcCCeEEEEECCCcEE---EEEEEEEcCcccEEecC
Confidence 4799999998877643 38999999999999864
No 49
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=43.21 E-value=1.5e+02 Score=23.77 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=27.3
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|+|+..++.. +. |++.++|+.=.+.+.+
T Consensus 9 l~g~~V~VeLKng~~-~~--G~L~~vD~~MNl~L~~ 41 (90)
T cd01724 9 LTNETVTIELKNGTI-VH--GTITGVDPSMNTHLKN 41 (90)
T ss_pred CCCCEEEEEECCCCE-EE--EEEEEEcCceeEEEEE
Confidence 379999999988764 44 8999999988888865
No 50
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=40.00 E-value=1.5e+02 Score=21.87 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=29.9
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEeCCCceE-EEEeCCCcEEEEcC
Q 017728 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYL-LAIGDDNQMCELHP 349 (367)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L-lv~~~dG~~~~l~p 349 (367)
+..|+.|.+.-++....++ |.|.++|....+ .|.-+||...++--
T Consensus 6 ~~~Ge~V~~rWP~s~lYYe--~kV~~~d~~~~~y~V~Y~DGtel~lke 51 (55)
T PF09465_consen 6 FAIGEVVMVRWPGSSLYYE--GKVLSYDSKSDRYTVLYEDGTELELKE 51 (55)
T ss_dssp S-SS-EEEEE-TTTS-EEE--EEEEEEETTTTEEEEEETTS-EEEEEC
T ss_pred ccCCCEEEEECCCCCcEEE--EEEEEecccCceEEEEEcCCCEEEecc
Confidence 3579999999998876665 899999986444 46677887766543
No 51
>PRK14347 lipoate-protein ligase B; Provisional
Probab=39.01 E-value=3.3e+02 Score=25.47 Aligned_cols=118 Identities=15% Similarity=0.203 Sum_probs=61.5
Q ss_pred CCCCccccCCCCceeeeeeeccCCC-CcchhHHHHH--HHHHHHHHHhhhcCCCCCCCceeEecCcEEEC-----CeEeE
Q 017728 149 RSKNAWESPKGCLMFSFTIQMEDGR-VVPLLQYVAS--LALTEAINYVCSRDGLPCLDIKIKWPNDLYLN-----GIKVG 220 (367)
Q Consensus 149 R~GR~W~Sp~G~L~fSl~l~~~~~~-~l~~ls~~~g--lAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~-----gkKvg 220 (367)
|.|..=+--||.|..=.++...... ....-.++-. -++.++++++ |++. .+.+=-=-||++ ++|||
T Consensus 69 RGG~vTyHGPGQlV~YpIldL~~~~~~~~v~~yv~~lE~~ii~~l~~~----gi~~--~~~~~~~GVWv~~~~~~~~KIa 142 (209)
T PRK14347 69 RGGKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYF----GIKA--YIIKDKVGIWVKVRKDEFAKIA 142 (209)
T ss_pred CCcceEEeCCCcEEEEEEEeccccccCCCHHHHHHHHHHHHHHHHHHc----CCce--EEcCCCCEEEEcCCCCCCceEE
Confidence 5555444556775555555543211 1122223332 3555666554 3311 111101123443 68999
Q ss_pred EEeeeeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017728 221 GILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (367)
Q Consensus 221 GILiE~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (367)
-|=+-... ....=|+.||++.+. | .||+.+ .+..++.+++...+.++|.+.|
T Consensus 143 aiGv~v~r----~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-------~g~~~~~~~v~~~l~~~f~~~f 208 (209)
T PRK14347 143 AIGVRVRK----WVTYHGVAINISTDLSKFSGIIPCGLENSLVTSLNQ-------LGIHVEMSEFDKIIQTEFNKIF 208 (209)
T ss_pred EEeEEEec----ceeecceEEEeCCCccccCcEECCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHHh
Confidence 87665321 123479999998741 1 345532 2457788888888888886643
No 52
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=38.96 E-value=1.1e+02 Score=21.41 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=31.5
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCC-CcEEEEcCC
Q 017728 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDD-NQMCELHPD 350 (367)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~d-G~~~~l~pd 350 (367)
+..|+.|.+.. .+..-+. |+|+++++++...|.-.| |....+..+
T Consensus 3 ~~~G~~~~a~~-~d~~wyr--a~I~~~~~~~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYR--ARIIKVDGEQLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCCEEEEEe-CCCCEEE--EEEEEECCCCEEEEEEECCCccEEEeHH
Confidence 34688888887 3333444 899999998777777555 777666544
No 53
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=38.53 E-value=1.3e+02 Score=27.24 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=35.6
Q ss_pred CcEEECCeEeEEEeeeeeccCCcceEEEEeeecCCCC-CCcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 017728 210 NDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNE-EPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTF 286 (367)
Q Consensus 210 NDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~~-~p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~ 286 (367)
.|+|++|+|+.=-..-.. ....-|=+||||... .|. ..+. .+.+.+ ..+..++...+..++.+-++..
T Consensus 110 DDly~~grKLtVsIat~s----~vs~kiHlGiNV~t~g~p~--V~~i--gL~dlg-~~Di~~~m~~va~~yv~Eie~i 178 (189)
T COG2029 110 DDLYVEGRKLTVSIATVS----PVSSKIHLGINVKTEGVPD--VDAI--GLEDLG-YGDILEFMERVAVAYVREIEKI 178 (189)
T ss_pred CceeecCcEEEEEEEecC----CcceeEEEeEeeecccCCC--CCcc--cccccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999853333222 222347789999864 341 1111 111112 2455566666555554444433
No 54
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=32.49 E-value=1.3e+02 Score=26.50 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHH--HHHHHHHHHHhhChHHHH---HHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeC-CCceEEE
Q 017728 264 YQFRREDVIAAFFN--KFETFYDTFINQGFQTLE---ELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLT-SSGYLLA 337 (367)
Q Consensus 264 ~~~~r~~Ll~~ll~--~~~~~~~~~~~~gf~~l~---~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId-~~G~Llv 337 (367)
.+.+-.++++.+.. .+|..... +..+..+. .......-++|+.|.+...++.. ++ |++.+|. .+|.-.+
T Consensus 47 ~P~D~tefiaQlAQfs~lEq~~~~--n~~l~~l~~~~~~~~~a~slVGk~V~~~~~~g~~-~t--G~V~~V~~~~g~~~~ 121 (142)
T PRK09618 47 NPMEDKEFIAQMAQFSSLEQMTNM--NKSMEKLVSSSDGLTKYSELIGKEVEWEGEDGEI-VS--GTVTSVKQKDGDYPL 121 (142)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHhCCEEEEEeCCCCE-EE--EEEEEEEEcCCcEEE
Confidence 46677777777543 22221111 12222221 11123445789999997655543 33 7888887 4554333
Q ss_pred EeCCCcEEEEc
Q 017728 338 IGDDNQMCELH 348 (367)
Q Consensus 338 ~~~dG~~~~l~ 348 (367)
...||+.+.+.
T Consensus 122 ~~v~G~~~~ls 132 (142)
T PRK09618 122 VLDNGTWIVAD 132 (142)
T ss_pred EEECCEEEecc
Confidence 23466655543
No 55
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=32.33 E-value=1.9e+02 Score=22.38 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=21.8
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCC
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDD 341 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~d 341 (367)
..|++|++.-...+.. -..+..+|.+|.+.+.-++
T Consensus 4 ~~Ge~v~~~~~~~~~~---Yl~l~~~~~~G~v~~L~Pn 38 (83)
T PF14326_consen 4 RVGERVRFRVTSNRDG---YLYLFYIDADGKVTLLFPN 38 (83)
T ss_pred cCCCEEEEEEEeCCCe---EEEEEEECCCCCEEEEecC
Confidence 4688787765433221 1467788888877766544
No 56
>PF11095 Gemin7: Gem-associated protein 7 (Gemin7); InterPro: IPR020338 Gem-associated protein 7 (Gemin7) is a component of the survival of motor neuron complex, which functions in the assembly of spliceosomal small nuclear ribonucleoproteins. Gemin7 interacts with several Sm proteins of spliceosomal small nuclear ribonucleoproteins, especially SmE []. Gem-associated protein 7 is found in the nucleoplasm, in nuclear "gems" (Gemini of Cajal bodies), and in the cytoplasm. Three transcript variants encoding the same protein have been found for this gene [].; GO: 0032797 SMN complex; PDB: 1Y96_D.
Probab=30.95 E-value=2.3e+02 Score=22.47 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHHHHHHh-ccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEE
Q 017728 293 TLEELYYKTW-LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAI 338 (367)
Q Consensus 293 ~l~~~y~~~~-~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~ 338 (367)
.++++|.+.+ ...|++|.+...+... +. |++.+.|.++.-...
T Consensus 10 ~LRerfLr~l~~~~gk~v~f~l~e~t~-V~--a~F~a~d~~~~~f~V 53 (80)
T PF11095_consen 10 FLRERFLRSLLAMVGKPVEFTLHENTT-VS--ARFGACDIDVSNFQV 53 (80)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEGGG-E-EE--EEEEEE-TTS-EEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCCeE-EE--EEEEEecCchheEEh
Confidence 4667776665 3579999998876543 44 899999999877654
No 57
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=30.44 E-value=1.5e+02 Score=23.25 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=27.4
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|+..++... . |++.++|+.=.+.+.+
T Consensus 9 l~g~~V~VeLKng~~~-~--G~L~~vD~~MNi~L~n 41 (81)
T cd01725 9 LVGKEVTVELKNDLSI-R--GTLHSVDQYLNIKLTN 41 (81)
T ss_pred CCCCEEEEEECCCcEE-E--EEEEEECCCcccEEEE
Confidence 3799999999887643 4 8999999998888875
No 58
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=26.23 E-value=2.4e+02 Score=22.61 Aligned_cols=37 Identities=5% Similarity=0.205 Sum_probs=29.0
Q ss_pred HHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 300 KTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 300 ~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
+.++..|++|.|...++... .|++.++|..=.|++++
T Consensus 8 ~~~~~~~~~V~V~lr~~r~~---~G~L~~fD~hmNlvL~d 44 (87)
T cd01720 8 TQAVKNNTQVLINCRNNKKL---LGRVKAFDRHCNMVLEN 44 (87)
T ss_pred HHHHcCCCEEEEEEcCCCEE---EEEEEEecCccEEEEcc
Confidence 34444689999999887754 38999999998888865
No 59
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=24.39 E-value=2e+02 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=19.3
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcE
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQM 344 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~ 344 (367)
+.||.|++. |++..++.+ .+.+++.||..
T Consensus 13 f~gk~V~iv-----------GkV~~~~~~-~~~~~~~Dg~~ 41 (101)
T cd04479 13 FVGKTVRIV-----------GKVEKVDGD-SLTLISSDGVN 41 (101)
T ss_pred hCCCEEEEE-----------EEEEEecCC-eEEEEcCCCCE
Confidence 468888874 667777765 56666666633
No 60
>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
Probab=23.41 E-value=2e+02 Score=22.19 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
+|++|.|...++.. +. |+..++|..=.|.+.+
T Consensus 16 ~~~~V~V~lk~g~~-~~--G~L~~~D~~mNlvL~d 47 (79)
T COG1958 16 LNKRVLVKLKNGRE-YR--GTLVGFDQYMNLVLDD 47 (79)
T ss_pred hCCEEEEEECCCCE-EE--EEEEEEccceeEEEec
Confidence 57999999988764 33 8999999988888864
No 61
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=22.54 E-value=3.6e+02 Score=20.72 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=29.3
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCc-eEEEEeCCCcEEEEcCC
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIGDDNQMCELHPD 350 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~Llv~~~dG~~~~l~pd 350 (367)
..++.|++..-.+....+-.|+|..||+.. .|.+.++++....+.-+
T Consensus 40 ~~~~~v~ity~~~g~~~~~~G~I~~id~~~~~l~~~~~~~~~~~I~~~ 87 (92)
T PF08863_consen 40 QENQPVTITYYEDGYYQSVTGTIHKIDEINRTLKLKDEDGETEKIPFD 87 (92)
T ss_pred cCCCEEEEEEEECCeeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEhh
Confidence 456777776543333333459999999875 45555656766666544
No 62
>PF12945 YcgR_2: Flagellar protein YcgR; PDB: 2RDE_B 1YLN_A 3KYG_A.
Probab=21.85 E-value=1.2e+02 Score=23.05 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=22.0
Q ss_pred cCCCEEEEEE--CCcc-EEEEeeEEEEEeCCCceEEEEeC
Q 017728 304 HSGQRVIVQE--KNED-QVVENVVTIQGLTSSGYLLAIGD 340 (367)
Q Consensus 304 ~~Gq~V~v~~--~~~~-~~~~~~G~i~GId~~G~Llv~~~ 340 (367)
..|++|.++- +.+. ..+. -++.|++++.+|.+..+
T Consensus 2 ~iG~~i~i~i~~~~~~~~~y~--S~v~g~~~~~~l~i~~P 39 (87)
T PF12945_consen 2 KIGQKIEIEITNPTGEKGRYK--SRVIGIDDDRYLIISMP 39 (87)
T ss_dssp -TT-EEEEEEE-TTS-EEEEE--EEEEEEETTTEEEEE--
T ss_pred CCCCEEEEEEECCCCceEEEE--EEEEEECCCCEEEEEcC
Confidence 4689888866 2312 2233 58999999999999854
No 63
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=21.23 E-value=86 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=17.2
Q ss_pred EEEEeCCCceEEEEeCCCcEE
Q 017728 325 TIQGLTSSGYLLAIGDDNQMC 345 (367)
Q Consensus 325 ~i~GId~~G~Llv~~~dG~~~ 345 (367)
.+.+|++ |+|-+.+++|..+
T Consensus 7 qLidI~d-GflsLm~e~G~~k 26 (69)
T cd04468 7 QLIDIDD-GFLSLMDDDGETR 26 (69)
T ss_pred EEEeecC-CeEEEEcCCCCcc
Confidence 5789988 9999999999764
No 64
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=20.03 E-value=3.2e+02 Score=22.32 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=19.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCc-eEEEEeCCCcEEEEc
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIGDDNQMCELH 348 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~Llv~~~dG~~~~l~ 348 (367)
+.||.|++. |++..++++| .+.++..||..+.+.
T Consensus 16 ~~gk~Vriv-----------Gkv~~~~~~g~~~~l~~~d~~~V~v~ 50 (109)
T PF08661_consen 16 FVGKTVRIV-----------GKVESVDPDGGSATLSTSDGGQVTVS 50 (109)
T ss_dssp GTTSEEEEE-----------EEEEEE-TTSSEEEEE-TTS-EEEEE
T ss_pred hCCCeEEEE-----------EEEeeEcCCCCEEEEEcCCCCEEEEE
Confidence 578988874 7788888554 455555555444443
Done!