Query 017728
Match_columns 367
No_of_seqs 284 out of 1363
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkx_A Biotin-[acetyl-COA-carb 100.0 1.7E-59 5.9E-64 458.7 24.8 252 91-354 64-323 (323)
2 2dxu_A Biotin--[acetyl-COA-car 100.0 9.9E-59 3.4E-63 434.8 27.6 228 101-354 2-232 (235)
3 2eay_A Biotin [acetyl-COA-carb 100.0 5.7E-58 2E-62 429.0 21.2 222 109-354 2-230 (233)
4 3rux_A BIRA bifunctional prote 100.0 1.3E-56 4.5E-61 428.3 26.1 244 91-353 12-267 (270)
5 1bia_A BIRA bifunctional prote 100.0 7.8E-56 2.7E-60 432.3 27.7 248 92-354 65-316 (321)
6 2ej9_A Putative biotin ligase; 100.0 3E-56 1E-60 418.4 23.5 220 111-354 2-235 (237)
7 3bfm_A Biotin protein ligase-l 100.0 3.4E-45 1.2E-49 342.7 21.6 212 109-354 11-233 (235)
8 2qhs_A Lipoyltransferase; glob 98.2 1.9E-05 6.7E-10 73.3 13.7 118 146-283 92-225 (237)
9 1w66_A Lipoyltransferase; lipo 97.1 0.011 3.6E-07 54.7 14.2 119 146-283 75-213 (232)
10 2p5i_A BH3822 protein; PFAM030 96.5 0.012 4E-07 55.8 10.2 90 146-246 89-186 (288)
11 2c8m_A Lipoate-protein ligase 96.2 0.067 2.3E-06 49.8 13.2 128 146-284 71-223 (262)
12 2p0l_A Lipoate-protein ligase 96.1 0.023 7.9E-07 53.8 9.6 129 146-285 86-248 (288)
13 1vqz_A Lipoate-protein ligase, 95.7 0.13 4.3E-06 50.0 13.2 124 146-284 79-222 (341)
14 2e5a_A Lipoyltransferase 1; li 95.2 0.058 2E-06 52.4 8.9 125 146-284 72-214 (347)
15 3a7r_A Lipoate-protein ligase 95.0 0.16 5.4E-06 49.1 11.2 123 146-284 69-212 (337)
16 2ddz_A 190AA long hypothetical 65.7 41 0.0014 29.7 9.6 105 160-285 66-178 (190)
17 1d3b_B Protein (small nuclear 64.4 13 0.00043 28.5 5.6 33 304-339 12-44 (91)
18 3s6n_G Small nuclear ribonucle 63.5 14 0.00049 27.3 5.6 33 304-339 12-44 (76)
19 1h64_1 SnRNP SM-like protein; 62.8 16 0.00056 26.8 5.8 33 304-339 12-44 (75)
20 1i4k_A Putative snRNP SM-like 60.8 19 0.00066 26.5 5.9 33 304-339 12-44 (77)
21 1th7_A SnRNP-2, small nuclear 58.8 19 0.00064 27.0 5.6 33 304-339 17-49 (81)
22 4emk_B U6 snRNA-associated SM- 58.7 20 0.00069 26.4 5.6 33 304-339 12-44 (75)
23 1mgq_A SM-like protein; LSM, R 56.8 23 0.00079 26.7 5.8 32 305-339 24-55 (83)
24 1ljo_A Archaeal SM-like protei 55.0 28 0.00094 25.7 5.9 33 304-339 13-46 (77)
25 1d3b_A Protein (small nuclear 54.3 56 0.0019 24.0 7.5 33 304-339 13-45 (75)
26 4emk_A U6 snRNA-associated SM- 53.3 27 0.00092 27.3 5.7 32 305-339 29-60 (94)
27 3bw1_A SMX4 protein, U6 snRNA- 52.5 23 0.00079 27.5 5.3 34 303-339 17-50 (96)
28 4emk_C U6 snRNA-associated SM- 51.7 29 0.00099 28.0 5.9 33 304-339 31-63 (113)
29 1i8f_A Putative snRNP SM-like 51.4 25 0.00086 26.3 5.2 33 304-339 19-51 (81)
30 3s6n_F Small nuclear ribonucle 48.4 35 0.0012 25.9 5.7 32 305-339 15-46 (86)
31 1n9r_A SMF, small nuclear ribo 45.6 43 0.0015 25.9 5.8 33 304-339 29-62 (93)
32 4emg_A Probable U6 snRNA-assoc 44.9 44 0.0015 25.8 5.8 32 305-339 18-49 (93)
33 3pgw_B SM B; protein-RNA compl 43.3 29 0.00099 31.7 5.1 33 304-339 12-44 (231)
34 4emh_A Probable U6 snRNA-assoc 41.9 49 0.0017 26.3 5.7 33 304-339 24-56 (105)
35 3kdf_A Replication protein A 1 40.2 55 0.0019 26.6 5.9 34 304-348 20-54 (121)
36 2y9a_D Small nuclear ribonucle 33.6 1.4E+02 0.0049 24.3 7.5 33 304-339 13-45 (126)
37 4hcz_A PHD finger protein 1; p 33.0 1.3E+02 0.0045 21.4 6.9 46 303-351 4-50 (58)
38 1b34_A Protein (small nuclear 32.5 85 0.0029 25.2 5.9 33 304-339 10-42 (119)
39 2fwk_A U6 snRNA-associated SM- 32.2 34 0.0012 27.7 3.4 33 305-340 37-69 (121)
40 3qii_A PHD finger protein 20; 31.5 1.4E+02 0.0049 22.8 6.5 48 301-351 20-67 (85)
41 3p8d_A Medulloblastoma antigen 30.9 1.5E+02 0.0053 21.5 6.5 46 303-351 7-52 (67)
42 2eqj_A Metal-response element- 30.3 1.6E+02 0.0055 21.5 6.6 42 303-347 14-56 (66)
43 1b34_B Protein (small nuclear 28.1 1.1E+02 0.0036 24.6 5.7 32 305-339 38-69 (118)
44 1m5q_A SMAP3, small nuclear ri 28.0 1.1E+02 0.0038 25.1 5.9 33 304-339 8-40 (130)
45 1kq1_A HFQ, HOST factor for Q 27.4 2E+02 0.0067 21.6 7.5 45 294-343 7-51 (77)
46 2pi2_E Replication protein A 1 26.7 1.2E+02 0.0041 25.3 5.9 34 304-348 41-75 (142)
47 4gop_A Putative uncharacterize 24.5 1.2E+02 0.0043 24.1 5.5 33 304-348 16-48 (114)
48 3sb2_A Protein HFQ; SM-like, R 23.9 2.3E+02 0.008 21.3 7.0 40 294-336 8-47 (79)
49 1y96_B Gemin7, SIP3, GEM-assoc 23.5 2.4E+02 0.0082 21.6 6.5 43 293-338 15-58 (85)
50 3ahu_A Protein HFQ; SM-like mo 21.0 2.7E+02 0.0092 20.9 6.8 45 294-343 11-55 (78)
51 1y96_A Gemin6, SIP2, GEM-assoc 20.6 2.9E+02 0.0098 21.1 7.1 34 303-339 14-48 (86)
52 2equ_A PHD finger protein 20-l 20.2 2.6E+02 0.009 20.5 6.3 44 303-349 10-53 (74)
No 1
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=100.00 E-value=1.7e-59 Score=458.74 Aligned_cols=252 Identities=18% Similarity=0.284 Sum_probs=207.0
Q ss_pred CCCCCHHHHHhhccccccCceEEEccCCCCHHHHHHHccC-CCCCeeEEEeCcccCCccCCCCccccCCC-Cceeeeeee
Q 017728 91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQ 168 (367)
Q Consensus 91 ~~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~-~~~~g~vViA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~ 168 (367)
++.++++.+...|+|..+|+.++|+++++|||+++ +.+. +.++|+||+|++||+||||+||+|+||+| +||||++++
T Consensus 64 ~~~l~~~~i~~~l~~~~~g~~i~~~~~~~STn~~a-~~~~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~l~ 142 (323)
T 3rkx_A 64 PDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAA-KKSLVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLR 142 (323)
T ss_dssp CSSCCHHHHHHHHHTCSSCSEEEEEEEESCHHHHH-HHHTTTCCCCEEEEEEEEC------------CTTCEEEEEEEEC
T ss_pred cccCCHHHHHhhcccccCCceEEEEcCCCCHHHHH-HHHhcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEEEec
Confidence 46799999999999999999999999999999999 6553 57899999999999999999999999999 799999998
Q ss_pred cc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCc-ceEEEEeeecCCCC
Q 017728 169 ME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVNNE 246 (367)
Q Consensus 169 ~~-~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~-~~vVIGIGINvn~~ 246 (367)
|. ++..++.+++++|+||++||++++ +.+++||||||||++||||||||+|+..+.+. .++|||||||||+.
T Consensus 143 p~~~~~~~~~lsl~~avAv~~al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv~~~ 216 (323)
T 3rkx_A 143 PNVAFSMISKFNLFIALGIRDAIQHFS------QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQ 216 (323)
T ss_dssp CCCCTTSGGGHHHHHHHHHHHHHHTTC------SSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhc------CCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEecCC
Confidence 86 456789999999999999999874 35799999999999999999999999887655 47999999999983
Q ss_pred ---CCcchHHHHHHhh-hcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEe
Q 017728 247 ---EPTTCLNAVLRKL-SDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVEN 322 (367)
Q Consensus 247 ---~p~t~l~~~l~~~-~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~ 322 (367)
.|.. +.....++ ...+.+++|++|++.++++|+.+|+.|.+.||.++.++|++++++.|++|++..+++. ++
T Consensus 217 ~~~~p~~-l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~~- 292 (323)
T 3rkx_A 217 LENFDES-IRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDKQ--FK- 292 (323)
T ss_dssp GGGSCTT-TGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSCSSSCEEEECC-CE--EE-
T ss_pred cccCCcc-cCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEEEECCeE--EE-
Confidence 3321 11111111 1245689999999999999999999999999999999999999999999999876543 33
Q ss_pred eEEEEEeCCCceEEEEeCCCcEEEEcCCCcee
Q 017728 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSS 354 (367)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~pdg~Sf 354 (367)
|++.|||++|+|+|++++|+++.++.+++|+
T Consensus 293 -G~~~gId~~G~Llv~~~~G~~~~~~sGevsl 323 (323)
T 3rkx_A 293 -GQAIDLDYDGYLIVRDEAGESHRLISADIDF 323 (323)
T ss_dssp -EEEEEECTTSCEEEEETTSCEEEESSCEEEC
T ss_pred -EEEEEECCCCEEEEEECCCCEEEEEEeeEEC
Confidence 8999999999999999999999999999874
No 2
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=100.00 E-value=9.9e-59 Score=434.80 Aligned_cols=228 Identities=26% Similarity=0.417 Sum_probs=201.3
Q ss_pred hhccccccCceEEEccCCCCHHHHHHHccCCCCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeecc-CCCCcchhH
Q 017728 101 NSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQ 179 (367)
Q Consensus 101 ~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~-~~~~l~~ls 179 (367)
..|+|..+|+.++++++++|||++++++ +.++|++|+|++||+||||+||+|+||+|+||||++++|+ ++..+++++
T Consensus 2 ~~l~t~~~g~~i~~~~~~~STn~~~~~~--~~~~~~vv~A~~QtaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~ 79 (235)
T 2dxu_A 2 LGLKTSIIGRRVIYFQEITSTNEFAKTS--YLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIV 79 (235)
T ss_dssp CCCCCSSTTSEEEEESSBSCHHHHHHHS--CCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHH
T ss_pred CCcccccCCCeEEEECCCCCHHHHHHhc--CCCCCeEEEECccccCcCCCcCcccCCCCCeEEEEEeecCCCHHHHHHHH
Confidence 4678899999999999999999999987 6789999999999999999999999999999999999876 345688999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeecCCCCCC--cchHHHHHH
Q 017728 180 YVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP--TTCLNAVLR 257 (367)
Q Consensus 180 ~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~~~p--~t~l~~~l~ 257 (367)
+++|+||++||+++ | .+++||||||||++||||||||+|+ ...++||||||||++..| .+++...
T Consensus 80 l~~alAv~~al~~~----~---~~~~iKWPNDi~~~gkKl~GIL~E~----~~~~vViGiGiNv~~~~p~~atsL~~~-- 146 (235)
T 2dxu_A 80 FLGAVGVVETLKEF----S---IDGRIKWPNDVLVNYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGATSMKLE-- 146 (235)
T ss_dssp HHHHHHHHHHHHHT----T---CCCEEETTTEEEETTEEEEEEEEEE----CSSCEEEEEEECSSSCCCTTBCCHHHH--
T ss_pred HHHHHHHHHHHHHh----C---CCeeeeCCCEEEECCEEEEEEEEee----cCCEEEEEEEEEeCCCCCCchhhHHHh--
Confidence 99999999999986 2 5799999999999999999999998 234699999999998644 4566432
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEE
Q 017728 258 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLA 337 (367)
Q Consensus 258 ~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv 337 (367)
.+..++|++|++.++++|+.+|+.|. +||+++.++|+++++ .|++|++..+++ ++ |++.|||++|+|+|
T Consensus 147 ----~~~~~~r~~ll~~ll~~l~~~~~~~~-~g~~~~~~~~~~~~~-~g~~V~v~~~~~---~~--G~~~gId~~G~L~v 215 (235)
T 2dxu_A 147 ----LGSEVPLLSVFRSLITNLDRLYLNFL-KNPMDILNLVRDNMI-LGVRVKILGDGS---FE--GIAEDIDDFGRLII 215 (235)
T ss_dssp ----HTSCCCHHHHHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHBC-CSSEEEC----C---CE--EEEEEECTTSCEEE
T ss_pred ----hCCCCCHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhcc-cCCeEEEEECCe---EE--EEEEEECCCCEEEE
Confidence 24578999999999999999999999 899999999999999 999999987654 23 89999999999999
Q ss_pred EeCCCcEEEEcCCCcee
Q 017728 338 IGDDNQMCELHPDGNSS 354 (367)
Q Consensus 338 ~~~dG~~~~l~pdg~Sf 354 (367)
++++|+++.+++++.++
T Consensus 216 ~~~~G~~~~~~~Gev~~ 232 (235)
T 2dxu_A 216 RLDSGEVKKVIYGDVSL 232 (235)
T ss_dssp ECTTSCEEEECCSSCCC
T ss_pred EECCCCEEEEEeeEEEE
Confidence 99999999999999986
No 3
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=100.00 E-value=5.7e-58 Score=429.05 Aligned_cols=222 Identities=27% Similarity=0.466 Sum_probs=184.1
Q ss_pred CceEEEccCCCCHHHHHHHccCCCCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeeccCCCCcchhHHHHHHHHHH
Q 017728 109 GRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTE 188 (367)
Q Consensus 109 g~~l~~~~~v~STN~~a~~~~~~~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~glAV~~ 188 (367)
...++++++++|||+++++ .+.++|++|+|++||+||||+||+|+||+|+||||++++|.++..++++++++|+||++
T Consensus 2 ~~~i~~~~~~~STn~~~~~--~~~~~g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~lsl~~~lAv~~ 79 (233)
T 2eay_A 2 FKNLIWLKEVDSTQERLKE--WNVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNPKEFENLLQLPLVLGLSVSE 79 (233)
T ss_dssp CCEEEEEEEBSCHHHHHHH--SCCCTTEEEEESCBCC------------CCEEEEEEEECTTTCCCTTHHHHHHHHHHHH
T ss_pred CccEEEEcccCCHHHHHHh--cCCCCCeEEEECCcCCCCCCCCCeeeCCCCCcEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 3568999999999999998 56789999999999999999999999999999999999887556788999999999999
Q ss_pred HHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeecCCC-CCC------cchHHHHHHhhhc
Q 017728 189 AINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN-EEP------TTCLNAVLRKLSD 261 (367)
Q Consensus 189 aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn~-~~p------~t~l~~~l~~~~~ 261 (367)
||++++ +.+++||||||||++||||||||+|+..+.+ ||||||||++ +.| .+++...
T Consensus 80 al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~----ViGIGiNv~~~~~p~~~~~~atsL~~~------ 143 (233)
T 2eay_A 80 ALEEIT------EIPFSLKWPNDVYFQEKKVSGVLCELSKDKL----IVGIGINVNQREIPEEIKDRATTLYEI------ 143 (233)
T ss_dssp HHHHHH------CCCCEEETTTEEEETTEEEEEEEEEEETTEE----EEEEEEECSCCCCCTTTTTTBCCHHHH------
T ss_pred HHHHhc------CCCccEeCcceEEECCeEEEEEEEEeecCCC----EEEEEEEcccccCcchhhhhhhhhHHh------
Confidence 999975 2579999999999999999999999976532 9999999996 333 3444322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCC
Q 017728 262 STYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDD 341 (367)
Q Consensus 262 ~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~d 341 (367)
.+..++|++|++.++++|+.+|..|.++||..++++|++++++.|++|++..+++ ++ |++.|||++|+|+|++++
T Consensus 144 ~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~---~~--G~~~gId~~G~L~v~~~~ 218 (233)
T 2eay_A 144 TGKDWDRKEVLLKVLKRISENLKKFKEKSFKEFKGKIESKMLYLGEEVKLLGEGK---IT--GKLVGLSEKGGALILTEE 218 (233)
T ss_dssp HSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHHBTTTTSEEEETTEEE---EE--EEEEEECTTSCEEEEETT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhcccCCEEEEEECCe---EE--EEEEEECCCCeEEEEECC
Confidence 2457899999999999999999999999999999999999999999999975432 33 899999999999999999
Q ss_pred CcEEEEcCCCcee
Q 017728 342 NQMCELHPDGNSS 354 (367)
Q Consensus 342 G~~~~l~pdg~Sf 354 (367)
|+ +.+++++.++
T Consensus 219 G~-~~~~~Gev~~ 230 (233)
T 2eay_A 219 GI-KEILSGEFSL 230 (233)
T ss_dssp EE-EEECSCCEEE
T ss_pred Ce-EEEEEeEEEE
Confidence 98 8999999986
No 4
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=100.00 E-value=1.3e-56 Score=428.33 Aligned_cols=244 Identities=21% Similarity=0.248 Sum_probs=207.3
Q ss_pred CCCCCHHHHHhhc-cccccCceEEEccCCCCHHHHHHHccC-CC-CCeeEEEeCcccCCccCCCCccccCCC-Cceeeee
Q 017728 91 QESFDVELFMNSL-ATNRFGRLLIWSPRLPSTHDVVSHNFC-EL-PVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFT 166 (367)
Q Consensus 91 ~~~f~~~~~~~~L-~t~~~g~~l~~~~~v~STN~~a~~~~~-~~-~~g~vViA~~QTaGRGR~GR~W~Sp~G-~L~fSl~ 166 (367)
.+.+|++.+...| .+...++.++++++++|||+++++++. +. ++|+||+|++||+||||+||+|.||+| +||||++
T Consensus 12 ~~~L~~~~i~~~l~~~~~~~~~i~~~~~~~STN~~~~~~~~~g~~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~ 91 (270)
T 3rux_A 12 RPPLDERSLRDQLIGAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVG 91 (270)
T ss_dssp CCCCCHHHHHHHHSSTTCCCCEEEEEEEESCHHHHHHHHHHTTCCCBTEEEEEEEESSEECGGGCEECCCTTSEEEEEEE
T ss_pred CCCCCHHHHHHhhccccccCceEEEEccCCcHHHHHHHHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCCCCeEEEEE
Confidence 4679999999999 455667789999999999999988754 44 799999999999999999999999999 7999999
Q ss_pred eecc--CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEEEEeeecCC
Q 017728 167 IQME--DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVN 244 (367)
Q Consensus 167 l~~~--~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vVIGIGINvn 244 (367)
++|. +...++++++++|+||++||+.++... +.+++||||||||++||||||||+|... .++||||||||+
T Consensus 92 l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~~~~---~~~~~iKWPNDI~~~gkKl~GIL~E~~~----~~vViGIGiNv~ 164 (270)
T 3rux_A 92 VRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVP---PAETGLKWPNDVLARGGKLAGILAEVAQ----PFVVLGVGLNVT 164 (270)
T ss_dssp EECTTSCGGGTHHHHHHHHHHHHHHHGGGSSSC---CSSCEEETTTEEEETTEEEEEEEEEEET----TEEEEEEEEESS
T ss_pred EccCCCChHHHHHHHHHHHHHHHHHHHHhcccC---CCceEEECCCeEEECCEEEEEEEEEeeC----CeEEEEEEEecc
Confidence 9986 335688999999999999999554211 3689999999999999999999999873 379999999999
Q ss_pred CCC------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccE
Q 017728 245 NEE------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQ 318 (367)
Q Consensus 245 ~~~------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~ 318 (367)
+.. +.+++.. ..+ ..+|++|++.++++|+.+|..|.++ |..+.++|+++++++||+|++..++++.
T Consensus 165 ~~~~~~~~~~atSL~~------~~~-~~~r~~ll~~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~V~v~~~~~~~ 236 (270)
T 3rux_A 165 QAPEEVDPDATSLLDL------GVA-APDRNRIASRLLRELEARIIQWRNA-NPQLAADYRARSLTIGSRVRVELPGGQD 236 (270)
T ss_dssp CCHHHHCTTBCCTGGG------TCS-SCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHTBSSTTSEEEEECTTSCE
T ss_pred CCccccCchhhccHHH------hcC-CCCHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHhcccCCEEEEEECCCeE
Confidence 751 2455531 123 3499999999999999999999887 9999999999999999999998654432
Q ss_pred EEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCCce
Q 017728 319 VVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNS 353 (367)
Q Consensus 319 ~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg~S 353 (367)
++ |++.|||++|+|+|++++| ++.++.++++
T Consensus 237 -~~--G~~~gId~~G~L~v~~~~g-~~~i~sGeV~ 267 (270)
T 3rux_A 237 -VV--GIARDIDDQGRLCLDVGGR-TVVVSAGDVV 267 (270)
T ss_dssp -EE--EEEEEECTTSCEEEEETTE-EEEESSCEEE
T ss_pred -EE--EEEEEECCCCeEEEEECCC-EEEEEEEEEE
Confidence 33 8999999999999998866 6789988875
No 5
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=100.00 E-value=7.8e-56 Score=432.28 Aligned_cols=248 Identities=23% Similarity=0.342 Sum_probs=198.5
Q ss_pred CCCCHHHHHhhccccccCceEEEccCCCCHHHHHHHccCCCCCeeEEEeCcccCCccCCCCccccCCC-Cceeeeeeecc
Q 017728 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQME 170 (367)
Q Consensus 92 ~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~g~vViA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~~~ 170 (367)
..+++..+...+.+ +.++++++++|||+++++++...++|+||+|++||+||||+||+|+||+| +||||++++|+
T Consensus 65 ~~L~~~eI~~~L~~----~~~~~~~~~~STn~~~~~~~~~~~~g~vv~A~~QtaGRGR~gr~W~Sp~g~~l~~S~~l~~~ 140 (321)
T 1bia_A 65 QLLNAKQILGQLDG----GSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLE 140 (321)
T ss_dssp CCCCHHHHHHTCCS----SCEEECSSBSCHHHHHHTTGGGCCTTCEEEESCBTTC---------CCTTSEEEEEEEEEEC
T ss_pred ccCCHHHHHHhcCC----ceEEEEEeeCChhHHHHHHHhcCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEEEccC
Confidence 56999999888865 56999999999999999877655689999999999999999999999999 79999999876
Q ss_pred -CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCC-cceEEEEeeecCCCCCC
Q 017728 171 -DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK-KFNVSIGIGLNVNNEEP 248 (367)
Q Consensus 171 -~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~-~~~vVIGIGINvn~~~p 248 (367)
++..++.+++++|+||++||+++ |. .+++||||||||++|+||||||+|+..+.+ ..++||||||||++..+
T Consensus 141 ~~~~~~~~l~l~~~~av~~al~~~----~~--~~~~iKWPNDi~~~g~Kl~GIL~E~~~~~~~~~~~viGiGiNv~~~~~ 214 (321)
T 1bia_A 141 QGPAAAIGLSLVIGIVMAEVLRKL----GA--DKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRV 214 (321)
T ss_dssp C-CCCTHHHHHHHHHHHHHHHHHT----TC--TTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC---
T ss_pred CChHHHhhHHHHHHHHHHHHHHHh----CC--CCccEeCcceeeECCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCcc
Confidence 34568899999999999999986 22 369999999999999999999999977644 35799999999998532
Q ss_pred -cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEE
Q 017728 249 -TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQ 327 (367)
Q Consensus 249 -~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~ 327 (367)
...+.....++...+..++|++|++.++++|+.+|..|.++||.++.++|++++.+.|++|++..+++. ++ |++.
T Consensus 215 ~~~~~~~~atsL~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~~--G~~~ 290 (321)
T 1bia_A 215 EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKE--IF--GISR 290 (321)
T ss_dssp --------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHBTTTTSEEEEEETTEE--EE--EEEE
T ss_pred ccchhccccccHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhcCCEEEEEECCcE--EE--EEEE
Confidence 112222212222235678999999999999999999999999999999999999999999999987653 33 8999
Q ss_pred EeCCCceEEEEeCCCcEEEEcCCCcee
Q 017728 328 GLTSSGYLLAIGDDNQMCELHPDGNSS 354 (367)
Q Consensus 328 GId~~G~Llv~~~dG~~~~l~pdg~Sf 354 (367)
|||++|+|+|++++| ++.++++++++
T Consensus 291 gid~~G~L~v~~~~g-~~~~~~Gev~~ 316 (321)
T 1bia_A 291 GIDKQGALLLEQDGI-IKPWMGGEISL 316 (321)
T ss_dssp EECTTSCEEEEETTE-EEEESSCEEEE
T ss_pred EECCCCeEEEEECCC-EEEEEeeeEEE
Confidence 999999999999999 88999999987
No 6
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3e-56 Score=418.44 Aligned_cols=220 Identities=21% Similarity=0.353 Sum_probs=192.6
Q ss_pred eEEEccCCCCHHHHHHHccC-CCCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeec-cCCCCcchhHHHHHHHHHH
Q 017728 111 LLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQM-EDGRVVPLLQYVASLALTE 188 (367)
Q Consensus 111 ~l~~~~~v~STN~~a~~~~~-~~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~-~~~~~l~~ls~~~glAV~~ 188 (367)
.++++++++|||+++++++. +.+ |++|+|++||+||||+||+|+||+|+||||++++| ..+. +++++++|+||++
T Consensus 2 ~i~~~~~~~STn~~~~~~~~~~~~-g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~--~~l~l~~~lAv~~ 78 (237)
T 2ej9_A 2 EIIHLSEIDSTNDYAKELAKEGKR-NFIVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKLYNP--KVINLLVPICIIE 78 (237)
T ss_dssp EEEEESCBSCHHHHHHHHHHTTCC-SEEEEESCBSSCBCGGGCBCCCCTTSEEEEEEEETTSSCH--HHHHHHHHHHHHH
T ss_pred cEEEEeeCCCHHHHHHHHHhCCCC-CEEEEECccCCCCCCCCCeeeCCCCCeEEEeEEccccCCH--HHHHHHHHHHHHH
Confidence 47899999999999998764 456 99999999999999999999999999999999997 4322 8899999999999
Q ss_pred HHHHhhhcCCCCCCCceeEecCcEEECC----eEeEEEeeeeeccCCcceEEEEeeecCCCCCC------cchHHHHHHh
Q 017728 189 AINYVCSRDGLPCLDIKIKWPNDLYLNG----IKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP------TTCLNAVLRK 258 (367)
Q Consensus 189 aL~~~~~~~G~~~~~v~IKWPNDI~v~g----kKvgGILiE~~~~~~~~~vVIGIGINvn~~~p------~t~l~~~l~~ 258 (367)
||++++ +.+++||||||||++| |||||||+|+ ...++||||||||++..| .+++...
T Consensus 79 al~~~~------~~~~~iKWPNDi~~~g~~~~kKl~GIL~E~----~~~~vViGiGiNv~~~~p~~l~~~atsL~~~--- 145 (237)
T 2ej9_A 79 VLKNYV------DKELGLKFPNDIMVKVNDNYKKLGGILTEL----TDDYMIIGIGINVNNQIRNEIREIAISLKEI--- 145 (237)
T ss_dssp HHTTTC------CSCEEEETTTEEEEEETTEEEEEEEEEEEE----CSSEEEEEEEECSSSCCCGGGGGTBCCHHHH---
T ss_pred HHHHhh------CCCcceeCCCEEEECCCcCccEeeEEEEec----CCCeEEEEEEEecCCCCcchhhhhhccHhHh---
Confidence 999874 3579999999999999 9999999998 235799999999998544 2444322
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEE
Q 017728 259 LSDSTYQFRREDVIAAFFNKFETFYDTFINQ--GFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLL 336 (367)
Q Consensus 259 ~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~--gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Ll 336 (367)
.+..++|++|++.++++|+.+|..|.++ ||.+++++|+++++++||+|++..+++. .++ |++.|||++|+|+
T Consensus 146 ---~~~~~~r~~ll~~ll~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~-~~~--G~~~gId~~G~L~ 219 (237)
T 2ej9_A 146 ---TGKELDKVEILSNFLKTFESYLEKLKNKEIDDYEILKKYKKYSITIGKQVKILLSNNE-IIT--GKVYDIDFDGIVL 219 (237)
T ss_dssp ---HSSCCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHBSSTTCEEEEEETTSC-EEE--EEEEEECSSEEEE
T ss_pred ---HCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCccCCEEEEEECCCe-EEE--EEEEEECCCCeEE
Confidence 2457899999999999999999999988 9999999999999999999999987764 133 8999999999999
Q ss_pred EEeCCCcEEEEcCCCcee
Q 017728 337 AIGDDNQMCELHPDGNSS 354 (367)
Q Consensus 337 v~~~dG~~~~l~pdg~Sf 354 (367)
++++| ++.++++++++
T Consensus 220 -~~~~G-~~~~~~Gev~~ 235 (237)
T 2ej9_A 220 -GTEKG-IERIPSGICIH 235 (237)
T ss_dssp -EETTE-EEEEEGGGEEE
T ss_pred -EcCCC-CEEEEEEEEEE
Confidence 99999 89999999886
No 7
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=100.00 E-value=3.4e-45 Score=342.67 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=177.9
Q ss_pred CceEEEccCCCCHHHHHHHccC-CCCCeeEEEeCcccCCccCCCCccccCCCCceeeeeeeccCC-CCcchhHHHHHHHH
Q 017728 109 GRLLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDG-RVVPLLQYVASLAL 186 (367)
Q Consensus 109 g~~l~~~~~v~STN~~a~~~~~-~~~~g~vViA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~-~~l~~ls~~~glAV 186 (367)
+..+.++++++|||+++++++. +.++|+||+|+ |.++||||++++++.. ..++++++++|+||
T Consensus 11 ~~~~~~l~~~~STN~~a~~~a~~g~~~g~vv~A~---------------~g~~L~~S~~l~~~~~~~~~~~lsl~~alAv 75 (235)
T 3bfm_A 11 LMTGEAAGPGQDPFDLACQKAELGVDAGLVVYEL---------------GTDVLRAALVLAPEVPLAKAMAMLPVCGVGF 75 (235)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCCTTEEEEEE---------------CSSEEEEEEEECCSSCHHHHTTHHHHHHHHH
T ss_pred CcceeecCCCCCHHHHHHHHHhcCCCCCEEEEEc---------------CCCCEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3567889999999999998764 46889999999 4458999999987632 35688999999999
Q ss_pred HHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeecc--CC-cceEEEEeeecCCCCCC------cchHHHHHH
Q 017728 187 TEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYR--TK-KFNVSIGIGLNVNNEEP------TTCLNAVLR 257 (367)
Q Consensus 187 ~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~--~~-~~~vVIGIGINvn~~~p------~t~l~~~l~ 257 (367)
++||+++.. +...++||||||||++||||||||+|+..+ .+ ..++||||||||++..| .+++.
T Consensus 76 ~~aL~~~~~----~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~~~vViGIGiNv~~~~~~~~~~~atsL~---- 147 (235)
T 3bfm_A 76 QNALGALAP----PEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALY---- 147 (235)
T ss_dssp HHHHHHHSC----TTCCEEECTTSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCCSSCCCCCSCCGG----
T ss_pred HHHHHHhcC----CCcceEecCCCeEEECCeEEEEEEEEeeccCCCCCccEEEEEEEEEcCCCCcccccccccchh----
Confidence 999999852 112399999999999999999999999874 33 35799999999998643 23332
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEE
Q 017728 258 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLA 337 (367)
Q Consensus 258 ~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv 337 (367)
...+..++|++|++.++++|+.+|+.|.++||..++++|++++++.||+|++ . + ++ |++.|||++|+|+|
T Consensus 148 --~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v--~-~---~~--G~~~gId~~G~L~v 217 (235)
T 3bfm_A 148 --AEGCADVAAPRLLESWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTE--A-G---RS--GTFLGVDEDFGMLL 217 (235)
T ss_dssp --GTTCTTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHBTTTTSEEEE--T-T---EE--EEEEEECTTCCEEE
T ss_pred --HhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEE--E-e---EE--EEEEEECCCCeEEE
Confidence 1235678999999999999999999999999999999999999999999999 2 2 23 89999999999999
Q ss_pred EeCCCcEEEEcCCCcee
Q 017728 338 IGDDNQMCELHPDGNSS 354 (367)
Q Consensus 338 ~~~dG~~~~l~pdg~Sf 354 (367)
++++|+ +.++.++++.
T Consensus 218 ~~~~G~-~~i~~GeV~~ 233 (235)
T 3bfm_A 218 RDETTT-HLIPLTTVLV 233 (235)
T ss_dssp ECSSCE-EEECGGGGSC
T ss_pred EeCCCe-EEEEeeeeEe
Confidence 999998 8899888764
No 8
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=98.19 E-value=1.9e-05 Score=73.29 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=77.2
Q ss_pred CccCCCCccccCCCCc-eeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCcee-EecCcEEECCeEeEEEe
Q 017728 146 GRGRSKNAWESPKGCL-MFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI-KWPNDLYLNGIKVGGIL 223 (367)
Q Consensus 146 GRGR~GR~W~Sp~G~L-~fSl~l~~~~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~I-KWPNDI~v~gkKvgGIL 223 (367)
.|-|.|..=+-.+|++ .++++ .... .+-..--...-+|.++|+++ | +++.. +++|||+++|||||||-
T Consensus 92 rr~rGGgavyH~pGqlv~Y~i~-~~~~--~~~~~~~~l~~~ii~~L~~l----G---i~a~~~~g~~dv~v~grKIag~g 161 (237)
T 2qhs_A 92 WVERGGDVTYHGPGQLVGYPIF-PVGR--EVRRFLRQIEEAIVRVAAGY----G---ISAYPTPGYAGVWVGEDKLCAIG 161 (237)
T ss_dssp ECCSSSSEEEECTTEEEEEEEC-CCTT--CHHHHHHHHHHHHHHHHHHT----T---CCCBCCSSSSSEEETTEEEEEEE
T ss_pred EEcCCCEEEEECCCCEEEEEEE-ECCc--CHHHHHHHHHHHHHHHHHHc----C---CcEEEeCCCCCEEECCcEEEEEe
Confidence 4567888777778876 44544 3322 11111112345677777765 5 45556 68999999999999999
Q ss_pred eeeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017728 224 CTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (367)
Q Consensus 224 iE~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (367)
+.... ..+.-|+.||++.+. | .+++...+ +..++.+++...+++.|.+.|
T Consensus 162 ~~~~~----~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l------~~~~~~~ev~~~l~~~f~~~~ 225 (237)
T 2qhs_A 162 VAVKE----GVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLL------GRKVPMEEAKARVVAAFAEVF 225 (237)
T ss_dssp EEEET----TEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHH------TSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeeC----CeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhh------CCCCCHHHHHHHHHHHHHHHh
Confidence 87421 245679999998741 1 24444321 357889999998888887655
No 9
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=97.07 E-value=0.011 Score=54.67 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=78.2
Q ss_pred CccCCCCccccCCCCceeeeeeeccCCCCcchhHH--HHHHHHHHHHHHhhhcCCCCCCCceeEe-cCcEEEC---CeEe
Q 017728 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQY--VASLALTEAINYVCSRDGLPCLDIKIKW-PNDLYLN---GIKV 219 (367)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~--~~glAV~~aL~~~~~~~G~~~~~v~IKW-PNDI~v~---gkKv 219 (367)
.|.|.|..-+--+|++.+.+++.... ......+ ..--+|.++|+++ | ++...+= .|||+++ |+||
T Consensus 75 r~~rGG~~tYHgPGQlv~Y~Il~l~~--~~~v~~~v~~le~~vI~~L~~~----G---i~a~~~~g~~gV~v~~~~~rKI 145 (232)
T 1w66_A 75 DTDRGGKITWHGPGQLVGYPIIGLAE--PLDVVNYVRRLEESLIQVCADL----G---LHAGRVDGRSGVWLPGRPARKV 145 (232)
T ss_dssp ECSSSSSEEEECTTEEEEEEECBBCS--SCCHHHHHHHHHHHHHHHHHHT----T---CCCEEETTEEEEEECSSSCEEE
T ss_pred EecCCCceEEECCCCeEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHc----C---CCeEecCCCCeEEecCCCCCEE
Confidence 56788887777788988888887543 2222222 2345677777765 4 4555443 4899999 9999
Q ss_pred EEEeeeeeccCCcceEEEEeeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017728 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (367)
Q Consensus 220 gGILiE~~~~~~~~~vVIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (367)
|||=+-.. +....=|+-+|++.+. | .||+... .+..++.+++...+.++|.+.+
T Consensus 146 aaig~r~~----~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~------lg~~~~~~ev~~~l~~~f~~~~ 213 (232)
T 1w66_A 146 AAIGVRVS----RATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAE------LGRTVTVDEVRATVAAAVCAAL 213 (232)
T ss_dssp EEEEEEEE----TTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHH------HTSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeeeeee----CCEEEcceEEecCcChHHhcCccccccCCCceeeeHHH------hCCCCCHHHHHHHHHHHHHHHh
Confidence 99877432 1234488889998751 1 2444322 1356888888888888887655
No 10
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=96.51 E-value=0.012 Score=55.83 Aligned_cols=90 Identities=20% Similarity=0.119 Sum_probs=52.3
Q ss_pred CccCCCCccccCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCcee--------EecCcEEECCe
Q 017728 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLNGI 217 (367)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~I--------KWPNDI~v~gk 217 (367)
.|-|.|+.=+-.+|+|.+|++.+......+-..--...-.|.++|+++ |+ ++.. .=.|||+++|+
T Consensus 89 RR~sGGgaVyHdpG~l~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~l----Gi---~a~~~~~~~~~c~g~~dl~v~gr 161 (288)
T 2p5i_A 89 VRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMFQDH----RE---QIEAREIVGSYCPGSYDLSIDGK 161 (288)
T ss_dssp EESSCCCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC-------C---CCEECCCTTSSSCCTTCEEETTE
T ss_pred EEcCCCceEEECCCcEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHc----CC---cEEEeccccCCCCCCccEEECCE
Confidence 466777776777789999999865321111111112334555555543 42 3332 11499999999
Q ss_pred EeEEEeeeeeccCCcceEEEEeeecCCCC
Q 017728 218 KVGGILCTSTYRTKKFNVSIGIGLNVNNE 246 (367)
Q Consensus 218 KvgGILiE~~~~~~~~~vVIGIGINvn~~ 246 (367)
||||+=.=.. +..+..|+-||++.+
T Consensus 162 KI~G~Aqr~~----~~~~lhh~~l~v~~d 186 (288)
T 2p5i_A 162 KFAGISQRRI----RGGVAVQIYLCVSGS 186 (288)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEECSSC
T ss_pred EEEEEEEEEe----CCEEEEEEEEEecCC
Confidence 9999854322 123567888999864
No 11
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=96.18 E-value=0.067 Score=49.76 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=73.2
Q ss_pred CccCCCCccccCCCCceeeeeeeccCCCCcc-hhHHHHHHHHHHHHHHhhhcCCCC-------CCCceeEecCcEEECCe
Q 017728 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVP-LLQYVASLALTEAINYVCSRDGLP-------CLDIKIKWPNDLYLNGI 217 (367)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~-~ls~~~glAV~~aL~~~~~~~G~~-------~~~v~IKWPNDI~v~gk 217 (367)
.|-|.|+.=+-.+|+|.+|++.+.... .+. ... ...-.|.++|+++ |++ ..+....=.|||+++|+
T Consensus 71 rR~sGGgavyhd~G~l~ys~i~~~~~~-~~~~~y~-~l~~~ii~~l~~l----Gi~~~~~~~~~~~a~~~g~~dv~v~g~ 144 (262)
T 2c8m_A 71 RRYTGGGAVYHDLGDLNFSVVRSSDDM-DITSMFR-TMNEAVVNSLRIL----GLDARPGELNDVSIPVNKKTDIMAGEK 144 (262)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECSSC-CHHHHHH-HHHHHHHHHHHHT----TCCCEECCBCCTTSSSSBTTSEEETTE
T ss_pred EECCCCceEEeCCCcEEEEEEEcCCCC-CHHHHHH-HHHHHHHHHHHHc----CCCcccccccCCcceECCcCcEEECCe
Confidence 455666655555689999999865321 111 222 2455667777664 431 00233333599999999
Q ss_pred EeEEEeeeeeccCCcceEEEEeeecCCCCC---------CcchHHHH--------HHhhhcCCCCCCHHHHHHHHHHHHH
Q 017728 218 KVGGILCTSTYRTKKFNVSIGIGLNVNNEE---------PTTCLNAV--------LRKLSDSTYQFRREDVIAAFFNKFE 280 (367)
Q Consensus 218 KvgGILiE~~~~~~~~~vVIGIGINvn~~~---------p~t~l~~~--------l~~~~~~~~~~~r~~Ll~~ll~~~~ 280 (367)
||||+=.=.. +..+..|.-||++.+. |...+... ...+.+.. .++.+++...+.+.|.
T Consensus 145 Ki~G~aqr~~----~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~~ 219 (262)
T 2c8m_A 145 KIMGAAGAMR----KGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGFS 219 (262)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHHH
T ss_pred EEEEeeeEEe----CCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHHH
Confidence 9999854332 1246788889998641 00001000 01111112 5789999999998888
Q ss_pred HHHH
Q 017728 281 TFYD 284 (367)
Q Consensus 281 ~~~~ 284 (367)
+.+.
T Consensus 220 ~~~~ 223 (262)
T 2c8m_A 220 ETLH 223 (262)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7763
No 12
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=96.08 E-value=0.023 Score=53.84 Aligned_cols=129 Identities=21% Similarity=0.134 Sum_probs=71.0
Q ss_pred CccCCCCccccCCCCceeeeeeeccCCCCcch--hHHHHHHHHHHHHHHhhhcCCCCCCCcee--------EecCcEEEC
Q 017728 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPL--LQYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLN 215 (367)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~--ls~~~glAV~~aL~~~~~~~G~~~~~v~I--------KWPNDI~v~ 215 (367)
.|-|.|+.=+-.+|++.+|++.+......... .--...-.|.++|++ +|+ ++.. .=.|||+++
T Consensus 86 RR~sGGgaVyHdpG~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~----lGi---~a~~~~~~~~~c~g~~Dl~v~ 158 (288)
T 2p0l_A 86 VRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSD----FYQ---PIEHFEVETSYCPGKFDLSIN 158 (288)
T ss_dssp ECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTT----SCS---CCEECCCTTSSSCCTTCEEET
T ss_pred EEcCCCCeEEECCCcEEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHH----cCC---cEEEccccCCCCCCCccEEEC
Confidence 45677776666777899999976531111111 111223445555544 343 3332 114999999
Q ss_pred CeEeEEEeeeeeccCCcceEEEEeeecCCCCCCc--ch----HHHHHH-----------------hhhc-CCCCCCHHHH
Q 017728 216 GIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT--TC----LNAVLR-----------------KLSD-STYQFRREDV 271 (367)
Q Consensus 216 gkKvgGILiE~~~~~~~~~vVIGIGINvn~~~p~--t~----l~~~l~-----------------~~~~-~~~~~~r~~L 271 (367)
|+||||+=.=.. +..+..|.-||++.+... .. ....+. .+.+ .+..++.+++
T Consensus 159 grKI~G~Aqr~~----~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~~~~~~v 234 (288)
T 2p0l_A 159 GKKFAGLAQRRI----KNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDV 234 (288)
T ss_dssp TEEEEEEEEEEE----TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHH
T ss_pred CEEEEEEeEEEe----CCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCCCCHHHH
Confidence 999999854332 123567888888864210 00 000000 0000 1235788999
Q ss_pred HHHHHHHHHHHHHH
Q 017728 272 IAAFFNKFETFYDT 285 (367)
Q Consensus 272 l~~ll~~~~~~~~~ 285 (367)
...+.+.|.+.+..
T Consensus 235 ~~~l~~~f~~~~~~ 248 (288)
T 2p0l_A 235 IDRMLISLKQVGFN 248 (288)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 98888888776643
No 13
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=95.70 E-value=0.13 Score=49.99 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=76.4
Q ss_pred CccCCCCccccCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeee
Q 017728 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCT 225 (367)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE 225 (367)
.|-|.|+.=+-.+|+|.+|++.+......+. +. ...-.|.++|+++ | +++.+.=.|||+++|+||||+=.=
T Consensus 79 RR~sGGgaVyHd~G~l~ys~i~~~~~~~~~~-y~-~l~~~ii~aL~~l----G---i~a~~~gr~Di~v~grKIsG~Aqr 149 (341)
T 1vqz_A 79 RRISGGGAVYHDLNNLNYTIISKEDENKAFD-FK-SFSTPVINTLAQL----G---VKAEFTGRNDLEIDGKKFCGNAQA 149 (341)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECCTTCCCS-HH-HHHHHHHHHHHHT----T---CCEEEETTTEEEETTEEEEEEEEE
T ss_pred EECCCCCeEEECCCceEEEEEEcCcccCCcc-HH-HHHHHHHHHHHHc----C---CeEEECCCCCEEEeCEEEEEEEEE
Confidence 4566777666678889999997543221121 22 3345677777765 4 456665569999999999998543
Q ss_pred eeccCCcceEEEEeeecCCCCCCcchHHHHH-------------------Hhhhc-CCCCCCHHHHHHHHHHHHHHHHH
Q 017728 226 STYRTKKFNVSIGIGLNVNNEEPTTCLNAVL-------------------RKLSD-STYQFRREDVIAAFFNKFETFYD 284 (367)
Q Consensus 226 ~~~~~~~~~vVIGIGINvn~~~p~t~l~~~l-------------------~~~~~-~~~~~~r~~Ll~~ll~~~~~~~~ 284 (367)
.. +..+..|.-||++.+.. .+...+ ..+.+ .+..++.+++...+.+.|.+.+.
T Consensus 150 ~~----~~~~lhhgtllvd~Dl~--~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~ 222 (341)
T 1vqz_A 150 YI----NGRIMHHGCLLFDVDLS--VLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYP 222 (341)
T ss_dssp EE----TTEEEEEEEEESSCCTT--HHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCT
T ss_pred EE----CCEEEEEEEEEecCCHH--HHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 32 12466888888875311 010000 01111 12368899999999888877653
No 14
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=95.20 E-value=0.058 Score=52.45 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=71.7
Q ss_pred CccCCCCccccCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECC-eEeEEEee
Q 017728 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILC 224 (367)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~g-kKvgGILi 224 (367)
.|-|.|..=+-.+|++.+|++.+... .... ...-.|.++|+++ |. ++++...=.|||+++| +||||+=.
T Consensus 72 RR~sGGgaVyHd~G~l~ys~i~~~~~---~~~~--~~~~~ii~~L~~l----G~-~i~a~~~g~~di~v~g~~KIsG~Aq 141 (347)
T 2e5a_A 72 RRRSGGGTVYHDMGNINLTFFTTKKK---YDRM--ENLKLVVRALKAV----HP-HLDVQATKRFDLLLDGQFKISGTAS 141 (347)
T ss_dssp ECSSCSCCEEECTTEEEEEEEECGGG---CCHH--HHHHHHHHHHHHH----ST-TCCEEECTTSCEEETTTEEEECEEE
T ss_pred EECCCCCcEEECCCcEEEEEEecccc---CCHH--HHHHHHHHHHHHh----CC-ceEEEECCCCcEEECCCcEEEEEeE
Confidence 45566776666788899999875432 1221 2345677778775 31 1455555459999998 99999833
Q ss_pred eeeccCCcceEEEEeeecCCCCC----------Cc-------chHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017728 225 TSTYRTKKFNVSIGIGLNVNNEE----------PT-------TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (367)
Q Consensus 225 E~~~~~~~~~vVIGIGINvn~~~----------p~-------t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (367)
.... ..+.-+.-||++.+. |. +++......+.+....++.+++...+++.|.+.|.
T Consensus 142 -~~~~---~~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~ 214 (347)
T 2e5a_A 142 -KIGR---NAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQ 214 (347)
T ss_dssp -EECS---SCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -EeeC---CeEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 2221 124445566765430 10 11100000000112357899999999998888764
No 15
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=95.00 E-value=0.16 Score=49.14 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=75.2
Q ss_pred CccCCCCccccCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEE---CC-eEeEE
Q 017728 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL---NG-IKVGG 221 (367)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v---~g-kKvgG 221 (367)
.|-|.|..=+-.+|+|.+|++.+.... .. . ...-.|.++|+++ | +++...=.|||++ +| +||||
T Consensus 69 RR~sGGgaVyHd~G~l~ys~i~~~~~~---~y-~-~l~~~ii~~L~~l----G---i~a~~~g~~di~v~~~~g~rKIsG 136 (337)
T 3a7r_A 69 RRSSGGGAVFHDLGNTCFTFMAGKPEY---DK-T-ISTSIVLNALNAL----G---VSAEASGRNDLVVKTVEGDRKVSG 136 (337)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEETTTC---CH-H-HHHHHHHHHHHHT----T---CCEEEETTTEEEECCTTSCEEEEE
T ss_pred EEcCCCccEEECCCcEEEEEEECCccc---CH-H-HHHHHHHHHHHHc----C---CeEEECCCCcEEEEeCCCceEEEE
Confidence 455667766677899999999854321 12 2 2445677777664 4 4566655799999 89 99999
Q ss_pred EeeeeeccCCcceEEEEeeecCCCCC----------Cc-------chHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017728 222 ILCTSTYRTKKFNVSIGIGLNVNNEE----------PT-------TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (367)
Q Consensus 222 ILiE~~~~~~~~~vVIGIGINvn~~~----------p~-------t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (367)
+=.=.. +..+..|.-||++.+. |. ++.......+.+....++.+++...+.+.|.+.+.
T Consensus 137 ~Aqr~~----~~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~~~~~ 212 (337)
T 3a7r_A 137 SAYRET----KDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYG 212 (337)
T ss_dssp EEEEEC----SSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEE----CCEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHHHHcC
Confidence 854321 1246678888887531 10 00000000111112247899999999998887764
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=65.73 E-value=41 Score=29.68 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=58.5
Q ss_pred CceeeeeeeccCCC---CcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCeEeEEEeeeeeccCCcceEE
Q 017728 160 CLMFSFTIQMEDGR---VVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVS 236 (367)
Q Consensus 160 ~L~fSl~l~~~~~~---~l~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKvgGILiE~~~~~~~~~vV 236 (367)
.-+.-|++.-.+.. .....|-+...-+.+.|++. |. -..+==.|||+||||+.=-..-... ...-
T Consensus 66 ~dmlhFIvEhFD~~dl~~~y~rQRLlv~i~kE~L~~~----g~----~~~R~GDDLy~~~~KLSVSIAt~s~----vS~k 133 (190)
T 2ddz_A 66 DDMVHYILELFWHPDILLASSLQKLLIARLVELLWNY----GI----EASRRGDDIYVNGRKLSISIATVSP----VSIK 133 (190)
T ss_dssp EEEEEEEEEECSCCCHHHHHHHHHHHHHHHHHHHHTT----TC----CEEEETTEEEETTEECEEEEEEECS----SCEE
T ss_pred ccceEEEEeeCCCccHHHHHHHHHHHHHHHHHHHHHc----CC----eeeeccCeeeECCCEEEEEEEecCc----chhe
Confidence 35666777533221 22334545555566666643 32 2244568999999998643333222 2344
Q ss_pred EEeeecCCCC-CC----cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 017728 237 IGIGLNVNNE-EP----TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDT 285 (367)
Q Consensus 237 IGIGINvn~~-~p----~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~ 285 (367)
|=+||||... .| +-.|.+. + ++..++.+.+..++.+-++.
T Consensus 134 IH~GiNV~s~g~P~~V~aigL~dl-------G--i~i~~~~~~i~~~y~~E~~~ 178 (190)
T 2ddz_A 134 IHIGLNVKTVGVPPGVDAIGLEEL-------G--IDPTEFMERSAKALVEEIEK 178 (190)
T ss_dssp EEEEEESCCSSCCSSSCBCCHHHH-------T--CCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecccCCCCCccccCHHHc-------C--CCHHHHHHHHHHHHHHHHHH
Confidence 7789999864 23 3344332 2 37777777777666554443
No 17
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=64.42 E-value=13 Score=28.52 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=28.4
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
++|++|.|...++... . |++.|+|....|++.+
T Consensus 12 ~~~k~V~V~l~~gr~~-~--G~L~~~D~~mNlvL~d 44 (91)
T 1d3b_B 12 HIDYRMRCILQDGRIF-I--GTFKAFDKHMNLILCD 44 (91)
T ss_dssp GTTSEEEEEETTCCEE-E--EEEEECCTTCCEEEEE
T ss_pred HcCCcEEEEECCCeEE-E--EEEEEECCCCeEEecC
Confidence 5799999999887654 3 8999999999999975
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=63.47 E-value=14 Score=27.34 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=26.9
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++.. +. |++.|+|+.-.|++.+
T Consensus 12 ~~~k~V~V~Lk~gr~-~~--G~L~~~D~~mNlvL~~ 44 (76)
T 3s6n_G 12 FMDKKLSLKLNGGRH-VQ--GILRGFDPFMNLVIDE 44 (76)
T ss_dssp --CCEEEEEETTTEE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCeEEEEECCCcE-EE--EEEEEECCcceEEEec
Confidence 469999999988764 43 8999999999999975
No 19
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=62.80 E-value=16 Score=26.79 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=28.0
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++.. +. |++.|+|+.-.+++.+
T Consensus 12 ~~~~~V~V~l~~g~~-~~--G~L~~~D~~mNlvL~d 44 (75)
T 1h64_1 12 SLDKDVLVILKKGFE-FR--GRLIGYDIHLNVVLAD 44 (75)
T ss_dssp TTTSEEEEEETTSEE-EE--EEEEEECTTCCEEEEE
T ss_pred HCCCEEEEEECCCCE-EE--EEEEEEeCCCCeEEee
Confidence 469999999988764 43 8999999999999975
No 20
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=60.79 E-value=19 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=27.9
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++... . |++.++|+.-.+++.+
T Consensus 12 ~~~~~V~V~L~~g~~~-~--G~L~~~D~~mNlvL~d 44 (77)
T 1i4k_A 12 SLKSPVIVRLKGGREF-R--GTLDGYDIHMNLVLLD 44 (77)
T ss_dssp TTTSEEEEEETTSCEE-E--EEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEEcCCCEE-E--EEEEEEcCCCCeEEee
Confidence 4699999999887653 3 8999999999999975
No 21
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=58.77 E-value=19 Score=26.97 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=27.8
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++.. +. |++.++|+.-.+++.+
T Consensus 17 ~~~~~V~V~l~~g~~-~~--G~L~~~D~~mNlvL~d 49 (81)
T 1th7_A 17 SLNNLVLVKLKGNKE-VR--GMLRSYDQHMNLVLSD 49 (81)
T ss_dssp HTTSEEEEEETTTEE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCeEEEEEcCCcE-EE--EEEEEEcCCCCEEEcc
Confidence 368999999988764 33 8999999999999975
No 22
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=58.74 E-value=20 Score=26.42 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++.. +. |++.|+|+.-.|++.+
T Consensus 12 ~~~k~V~V~Lk~g~~-~~--G~L~~~D~~mNlvL~d 44 (75)
T 4emk_B 12 VIGKKVLIRLSSGVD-YK--GILSCLDGYMNLALER 44 (75)
T ss_dssp TTTSEEEEECTTSCE-EE--EEEEEECTTCEEEEEE
T ss_pred hCCCeEEEEEcCCcE-EE--EEEEEEcCcceEEEcc
Confidence 369999999988764 33 8999999999999875
No 23
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=56.83 E-value=23 Score=26.67 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.3
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
.|++|.|...++.. +. |++.++|+.-.+++.+
T Consensus 24 ~~~~V~V~Lk~g~~-~~--G~L~~~D~~mNlvL~d 55 (83)
T 1mgq_A 24 LNSPVIIKLKGDRE-FR--GVLKSFDLHMNLVLND 55 (83)
T ss_dssp TTSEEEEEETTTEE-EE--EEEEEECTTCCEEEEE
T ss_pred CCCEEEEEEcCCcE-EE--EEEEEECCCceeEEcc
Confidence 58999999988764 43 8999999999999975
No 24
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=54.99 E-value=28 Score=25.70 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.8
Q ss_pred cCCCEEEEEECCc-cEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNE-DQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~-~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|+|+..++ .. +. |++.|+|+.-.|++.+
T Consensus 13 ~~~~~v~V~lk~g~~~-~~--G~L~~~D~~mNlvL~d 46 (77)
T 1ljo_A 13 MVGKIIRVEMKGEENQ-LV--GKLEGVDDYMNLYLTN 46 (77)
T ss_dssp TTTSEEEEEETTCSSE-EE--EEEEEECTTCCEEEEE
T ss_pred HCCCEEEEEEeCCCEE-EE--EEEEEECCcceEEEee
Confidence 4689999999887 54 33 8999999999999975
No 25
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=54.34 E-value=56 Score=24.01 Aligned_cols=33 Identities=6% Similarity=-0.027 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|+..++.. +. |++.|+|+.=.+.+.+
T Consensus 13 ~~g~~V~VeLk~g~~-~~--G~L~~~D~~MNl~L~~ 45 (75)
T 1d3b_A 13 AEGHIVTCETNTGEV-YR--GKLIEAEDNMNCQMSN 45 (75)
T ss_dssp TTTSEEEEEETTSCE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEECCCcE-EE--EEEEEEccceeEEEEe
Confidence 469999999998764 44 8999999998888875
No 26
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=53.32 E-value=27 Score=27.26 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
.|++|.|...++.. +. |+++|+|+.-.|++.+
T Consensus 29 l~k~V~V~Lk~gr~-~~--G~L~gfD~~mNlvL~d 60 (94)
T 4emk_A 29 IGSNLWVIMKSERE-FA--GTLVGFDDYVNIVLKD 60 (94)
T ss_dssp TTSEEEEEESSSEE-EE--EEEEEECTTCCEEEEE
T ss_pred cCCeEEEEECCCcE-EE--EEEEEEcccCCeEeee
Confidence 68999999988764 33 8999999999999975
No 27
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=52.55 E-value=23 Score=27.52 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=28.5
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
-.+|++|.|...++... .|+++|+|..-.|++.+
T Consensus 17 ~~i~k~V~V~Lk~gr~~---~G~L~~fD~~mNlVL~d 50 (96)
T 3bw1_A 17 LNLDERVYIKLRGARTL---VGTLQAFDSHCNIVLSD 50 (96)
T ss_dssp GGTTSEEEEEEGGGCEE---EEEEEEECTTCCEEEEE
T ss_pred HHCCCeEEEEECCCcEE---EEEEEEECCCCcEEEcC
Confidence 35799999999887654 38999999999999975
No 28
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=51.68 E-value=29 Score=27.97 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
++|++|.|...++... .|++.|+|....|++.+
T Consensus 31 ~l~k~V~V~L~dGr~~---~G~L~~fD~~mNLVL~d 63 (113)
T 4emk_C 31 YQDQRIQATFTGGRQI---TGILKGFDQLMNLVLDD 63 (113)
T ss_dssp -CCSEEEEEETTSCEE---EEEEEEECTTCCEEEEE
T ss_pred HcCCcEEEEEeCCeEE---EEEEEEEcCcccEEEee
Confidence 4799999999887654 38999999999999975
No 29
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=51.38 E-value=25 Score=26.27 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=27.6
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++.. +. |++.++|+.-.|++.+
T Consensus 19 ~~~~~V~V~l~~g~~-~~--G~L~~~D~~mNlvL~d 51 (81)
T 1i8f_A 19 SIGKQVLVKLRDSHE-IR--GILRSFDQHVNLLLED 51 (81)
T ss_dssp TTTSEEEEEEGGGEE-EE--EEEEEECTTCCEEEEE
T ss_pred HCCCeEEEEEcCCcE-EE--EEEEEEcCCCeeEEcc
Confidence 458999999987654 43 8999999999999975
No 30
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=48.44 E-value=35 Score=25.90 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=27.4
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
.|++|.|...++.. +. |++.|+|+.-.|++.+
T Consensus 15 ~~k~V~V~Lk~g~~-~~--G~L~~~D~~mNlvL~d 46 (86)
T 3s6n_F 15 TGKPVMVKLKWGME-YK--GYLVSVDGYMNMQLAN 46 (86)
T ss_dssp TTSEEEEEETTSCE-EE--EEEEEECTTCCEEEEE
T ss_pred CCCeEEEEEcCCeE-EE--EEEEEEcCceEEEEee
Confidence 59999999988764 33 8999999999999875
No 31
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=45.58 E-value=43 Score=25.91 Aligned_cols=33 Identities=18% Similarity=-0.038 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCc-cEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNE-DQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~-~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++ .. +. |++.|+|+.=.|++.+
T Consensus 29 ~i~k~V~V~Lk~g~~~-~~--G~L~~~D~~MNlvL~d 62 (93)
T 1n9r_A 29 LVNHRVGVKLKFNSTE-YR--GTLVSTDNYFNLQLNE 62 (93)
T ss_dssp GTTSEEEEEESSTTEE-EE--EEEEECCTTTCEEEEE
T ss_pred hCCCEEEEEEcCCCEE-EE--EEEEEEccccEEEEee
Confidence 4699999999887 54 44 8999999999999875
No 32
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=44.86 E-value=44 Score=25.76 Aligned_cols=32 Identities=6% Similarity=0.067 Sum_probs=27.2
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
.|++|.|...++.. +. |++.|+|..-.|++.+
T Consensus 18 ~~~~V~V~l~~gr~-~~--G~L~~~D~~mNlvL~d 49 (93)
T 4emg_A 18 LDEIVYVKLRGDRE-LN--GRLHAYDEHLNMVLGD 49 (93)
T ss_dssp TTSEEEEEETTTEE-EE--EEEEEECTTCCEEEEE
T ss_pred CCCEEEEEECCCcE-EE--EEEEEECCcccEEeec
Confidence 58999999987764 33 8999999999999975
No 33
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=43.34 E-value=29 Score=31.67 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
++|++|+|+..++++. .|+++++|..-.|++.+
T Consensus 12 lIdKrV~V~LkdGRel---~GtLkgFDq~MNLVL~D 44 (231)
T 3pgw_B 12 HIDYRMRCILQDGRIF---IGTFKAFDKHMNLILCD 44 (231)
T ss_pred hcCCeEEEEECCCcEE---EEEEEEEcccccEEecC
Confidence 4799999999887653 38999999999999864
No 34
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=41.89 E-value=49 Score=26.27 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=26.6
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|+..++.. +. |++.|+|+.=.|++.+
T Consensus 24 ~igk~V~V~Lk~G~~-~~--G~L~~~D~~MNlvL~d 56 (105)
T 4emh_A 24 TQGRPILVELKNGET-FN--GHLENCDNYMNLTLRE 56 (105)
T ss_dssp --CCEEEEEETTSCE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEECCCCE-EE--EEEEEEcCCceEEEEE
Confidence 369999999988765 33 8999999999998874
No 35
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=40.18 E-value=55 Score=26.60 Aligned_cols=34 Identities=6% Similarity=0.158 Sum_probs=24.0
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCc-eEEEEeCCCcEEEEc
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIGDDNQMCELH 348 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~Llv~~~dG~~~~l~ 348 (367)
+.||+|++. |++..++++| .+.++..||....+.
T Consensus 20 fvgk~Vriv-----------GkV~~~~~~g~~~~l~s~Dg~~Vtv~ 54 (121)
T 3kdf_A 20 FIDKPVCFV-----------GRLEKIHPTGKMFILSDGEGKNGTIE 54 (121)
T ss_dssp GTTCEEEEE-----------EEEEEECTTSSEEEEECTTSCEEEEE
T ss_pred hCCCeEEEE-----------EEEEEEcCCCCEEEEEeCCCCEEEEE
Confidence 578999874 7888998766 566776666555444
No 36
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=33.58 E-value=1.4e+02 Score=24.29 Aligned_cols=33 Identities=6% Similarity=-0.027 Sum_probs=27.6
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|+..++.. +. |++.++|+.=.+.+.+
T Consensus 13 ~~gk~V~VeLknG~~-~~--G~L~~~D~~MNi~L~d 45 (126)
T 2y9a_D 13 AEGHIVTCETNTGEV-YR--GKLIEAEDNMNCQMSN 45 (126)
T ss_dssp CSSCEEEEEESSCCE-EE--EEEEEECTTSCEEEEE
T ss_pred hCCCEEEEEECCCcE-EE--EEEEEEcCceEEEEee
Confidence 579999999988764 44 8999999998888864
No 37
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=33.00 E-value=1.3e+02 Score=21.39 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=35.4
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEeCCCc-eEEEEeCCCcEEEEcCCC
Q 017728 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIGDDNQMCELHPDG 351 (367)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~Llv~~~dG~~~~l~pdg 351 (367)
+..|+.|-++-.++... .|+|+.|+..+ .-+|+-+||...-+...+
T Consensus 4 f~~GedVLarwsDG~fY---lGtI~~V~~~~~~clV~F~D~s~~W~~~kd 50 (58)
T 4hcz_A 4 LWEGQDVLARWTDGLLY---LGTIKKVDSAREVCLVQFEDDSQFLVLWKD 50 (58)
T ss_dssp CCTTCEEEEECTTSCEE---EEEEEEEETTTTEEEEEETTSCEEEEEGGG
T ss_pred cccCCEEEEEecCCCEE---eEEEEEEecCCCEEEEEEcCCCeEEEEhHH
Confidence 45799999988877654 38999999987 778888888876655443
No 38
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=32.51 E-value=85 Score=25.25 Aligned_cols=33 Identities=30% Similarity=0.202 Sum_probs=27.5
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++.. +. |++.++|+.=.|++.+
T Consensus 10 ~~gk~V~V~Lk~g~~-~~--G~L~~~D~~MNlvL~d 42 (119)
T 1b34_A 10 LSHETVTIELKNGTQ-VH--GTITGVDVSMNTHLKA 42 (119)
T ss_dssp CTTCEEEEEETTCCE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEEcCCCE-EE--EEEEEEcccceEEecc
Confidence 469999999988764 33 8999999999998864
No 39
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=32.15 E-value=34 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=27.4
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeC
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (367)
+|++|.|...++.. + .|++.|+|..-.|++.+.
T Consensus 37 l~k~V~V~Lk~Gr~-~--~G~L~~fD~~mNlVL~d~ 69 (121)
T 2fwk_A 37 IGNRIYVVMKGDKE-F--SGVLRGFDEYVNMVLDDV 69 (121)
T ss_dssp BTSBCEEEETTTEE-E--CCEEEEECTTCCEEEESC
T ss_pred cCCeEEEEECCCcE-E--EEEEEEEcccCCeEeceE
Confidence 47899999988765 3 389999999999999754
No 40
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=31.46 E-value=1.4e+02 Score=22.85 Aligned_cols=48 Identities=6% Similarity=0.003 Sum_probs=37.1
Q ss_pred HhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCC
Q 017728 301 TWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDG 351 (367)
Q Consensus 301 ~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg 351 (367)
..+..|.+|.-+-.+. ..+. ++|..|+.+|.-.|.-.||....+.+..
T Consensus 20 ~~f~vGd~VlArW~D~-~yYP--AkI~sV~~~~~YtV~F~DG~~etvk~~~ 67 (85)
T 3qii_A 20 SEFQINEQVLACWSDC-RFYP--AKVTAVNKDGTYTVKFYDGVVQTVKHIH 67 (85)
T ss_dssp -CCCTTCEEEEECTTS-CEEE--EEEEEECTTSEEEEEETTSCEEEEEGGG
T ss_pred cccccCCEEEEEeCCC-CEee--EEEEEECCCCeEEEEEeCCCeEEecHHH
Confidence 4567899999888544 4454 8999999999999988888887776554
No 41
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=30.91 E-value=1.5e+02 Score=21.53 Aligned_cols=46 Identities=7% Similarity=0.023 Sum_probs=35.5
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcCCC
Q 017728 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDG 351 (367)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~pdg 351 (367)
+..|.+|...-.+. ..+. |+|..|+.+|.-.|.-.||....+.+..
T Consensus 7 ~~vGd~vmArW~D~-~yYp--A~I~si~~~~~Y~V~F~dG~~etvk~~~ 52 (67)
T 3p8d_A 7 FQINEQVLACWSDC-RFYP--AKVTAVNKDGTYTVKFYDGVVQTVKHIH 52 (67)
T ss_dssp CCTTCEEEEECTTS-CEEE--EEEEEECTTSEEEEEETTSCEEEEEGGG
T ss_pred cccCCEEEEEcCCC-CEee--EEEEEECCCCeEEEEEeCCceEEEeHHH
Confidence 46789998887444 4454 8999999999988887778887776544
No 42
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=30.31 E-value=1.6e+02 Score=21.51 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=33.4
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEeCCC-ceEEEEeCCCcEEEE
Q 017728 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSS-GYLLAIGDDNQMCEL 347 (367)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~-G~Llv~~~dG~~~~l 347 (367)
+..|+.|.....++.. +. |+|+.|+.. |.-+|+-+||...-+
T Consensus 14 f~vGddVLA~wtDGl~-Y~--gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 14 FEEGQDVLARWSDGLF-YL--GTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp SCTTCEEEEECTTSCE-EE--EEEEEEETTTTEEEEEETTTEEEEE
T ss_pred ccCCCEEEEEEccCcE-EE--eEEEEEccCCcEEEEEEccCCEEEE
Confidence 5679999988766654 33 899999985 999999999887654
No 43
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=28.06 E-value=1.1e+02 Score=24.59 Aligned_cols=32 Identities=6% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
.|++|.|...++... . |++.|+|..-.|++.+
T Consensus 38 ~~k~V~V~Lk~gr~~-~--G~L~~fD~~mNlvL~d 69 (118)
T 1b34_B 38 NNTQVLINCRNNKKL-L--GRVKAFDRHCNMVLEN 69 (118)
T ss_dssp HTCEEEEEETTSCEE-E--EEEEEECTTCCEEEEE
T ss_pred CCcEEEEEECCCcEE-E--EEEEEeCCceEEEEeC
Confidence 479999999887653 3 8999999999999975
No 44
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=28.00 E-value=1.1e+02 Score=25.11 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEe
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (367)
..|++|.|...++.. +. |++.|+|+.=.|++.+
T Consensus 8 ~igk~V~V~Lk~G~~-~~--G~L~~~D~~MNlvL~d 40 (130)
T 1m5q_A 8 LLGREVQVVLSNGEV-YK--GVLHAVDNQLNIVLAN 40 (130)
T ss_dssp TTTSEEEEEETTSCE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCeEEEEECCCcE-EE--EEEEEEcccceeEEee
Confidence 579999999988764 33 8999999999988875
No 45
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=27.36 E-value=2e+02 Score=21.56 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCc
Q 017728 294 LEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQ 343 (367)
Q Consensus 294 l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~ 343 (367)
+.+.|.......+.+|+|..-++.+. .|+|.+.|.. .++++. +|+
T Consensus 7 lQd~fLn~lrk~k~~VtI~L~nG~~l---~G~I~~fD~f-~VlL~~-~g~ 51 (77)
T 1kq1_A 7 IQDKALENFKANQTEVTVFFLNGFQM---KGVIEEYDKY-VVSLNS-QGK 51 (77)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTSCEE---EEEEEEECSS-EEEEEE-TTE
T ss_pred cHHHHHHHHHhcCCeEEEEEeCCCEE---EEEEEEECCc-EEEEEE-CCe
Confidence 34455555555678999999887654 3899999987 444554 443
No 46
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=26.72 E-value=1.2e+02 Score=25.33 Aligned_cols=34 Identities=3% Similarity=0.083 Sum_probs=24.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCC-ceEEEEeCCCcEEEEc
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSS-GYLLAIGDDNQMCELH 348 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~-G~Llv~~~dG~~~~l~ 348 (367)
+.||+|++. |++..++++ +.+.++..||..+.+.
T Consensus 41 fvGk~VriV-----------GkV~~~~~~G~~~~l~s~Dg~~VtV~ 75 (142)
T 2pi2_E 41 FIDKPVCFV-----------GRLEKIHPTGKMFILSDGEGKNGTIE 75 (142)
T ss_dssp STTCEEEEE-----------EEEEEECTTSSEEEEECTTSCEEEEE
T ss_pred hCCCEEEEE-----------EEEeEEcCCCCEEEEEeCCCcEEEEE
Confidence 458988874 788899854 5666777777766665
No 47
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=24.54 E-value=1.2e+02 Score=24.10 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=23.8
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEc
Q 017728 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELH 348 (367)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~ 348 (367)
+.||.|++. |++..++. +.+.+...||..+.+.
T Consensus 16 ~~g~~Vriv-----------GkV~~~~g-~~~~l~s~d~~~Vtv~ 48 (114)
T 4gop_A 16 YVGQTVRIV-----------GKVHKVTG-NTLLMQTSDLGNVEIA 48 (114)
T ss_dssp GTTSEEEEE-----------EEEEEEET-TEEEEECTTSCEEEEE
T ss_pred hCCCeEEEE-----------EEEeeeCC-CEEEEEeCCCCEEEEE
Confidence 578998874 67778886 7888887666555554
No 48
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=23.92 E-value=2.3e+02 Score=21.29 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEE
Q 017728 294 LEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLL 336 (367)
Q Consensus 294 l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Ll 336 (367)
+.+.|.........+|+|..-++.+. .|+|.+.|..--|+
T Consensus 8 lQd~fLn~lrk~k~~VtI~LvnG~~L---~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 8 LQDPFLNALRKEHVPVSIYLVNGIKL---QGHVESFDQYVVLL 47 (79)
T ss_dssp THHHHHHHHHHTTCCEEEEETTSCEE---EEEEEEECSSEEEE
T ss_pred hHHHHHHHHHhcCCeEEEEEeCCCEE---EEEEEEECCcEEEE
Confidence 34455556666778899999887754 38999999875444
No 49
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=23.45 E-value=2.4e+02 Score=21.57 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHhc-cCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEE
Q 017728 293 TLEELYYKTWL-HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAI 338 (367)
Q Consensus 293 ~l~~~y~~~~~-~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~ 338 (367)
.++++|.+.|. ..|++|.+...+..+ +. |++.+.|.+......
T Consensus 15 ~LReRfLr~l~~m~~~~v~f~m~E~t~-V~--a~F~a~d~d~~~f~V 58 (85)
T 1y96_B 15 ALRERYLRSLLAMVGHQVSFTLHEGVR-VA--AHFGATDLDVANFYV 58 (85)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEGGGCE-EE--EEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCeE-EE--EEEEecCcccceeEh
Confidence 45666666653 569999998876544 33 889999988776654
No 50
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=21.04 E-value=2.7e+02 Score=20.90 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCc
Q 017728 294 LEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQ 343 (367)
Q Consensus 294 l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~ 343 (367)
+.+.|...+...+.+|+|...++.+. . |.|.+.|.. .++++. +|+
T Consensus 11 lQd~fLn~lrk~~~~Vtv~L~nG~~l-~--G~I~~fD~f-~VlL~~-~g~ 55 (78)
T 3ahu_A 11 IQDQFLNQIRKENTYVTVFLLNGFQL-R--GQVKGFDNF-TVLLES-EGK 55 (78)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTSCEE-E--EEEEEECSS-EEEEES-SSC
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCeEE-E--EEEEEEcce-EEEEEE-CCe
Confidence 44556666666678899988887654 3 899999975 444543 443
No 51
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=20.59 E-value=2.9e+02 Score=21.09 Aligned_cols=34 Identities=6% Similarity=-0.051 Sum_probs=24.9
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEeCCCc-eEEEEe
Q 017728 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIG 339 (367)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~Llv~~ 339 (367)
-+.||+|.|...+++ .++ |++.++|+.. .+++.+
T Consensus 14 ~li~KeV~V~l~dg~-~y~--G~l~tvDp~s~sIvL~n 48 (86)
T 1y96_A 14 DYIYKEVRVTASEKN-EYK--GWVLTTDPVSANIVLVN 48 (86)
T ss_dssp HTTTCEEEEEETTTE-EEE--EEEEEECTTTCCEEEEE
T ss_pred hhcCCEEEEEEcCCC-EEE--EEEEEECCCceEEEEee
Confidence 357999999998775 344 8999999554 444544
No 52
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.23 E-value=2.6e+02 Score=20.50 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=32.7
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEeCCCceEEEEeCCCcEEEEcC
Q 017728 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHP 349 (367)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~p 349 (367)
+..|..|.-...++ .-+. ++|..|+++|.-.|.-.|+...++.+
T Consensus 10 ~kvGd~clA~wsDg-~~Y~--A~I~~v~~~~~~~V~f~Dyn~e~v~~ 53 (74)
T 2equ_A 10 FKAGEEVLARWTDC-RYYP--AKIEAINKEGTFTVQFYDGVIRCLKR 53 (74)
T ss_dssp CCTTCEEEEECSSS-SEEE--EEEEEESTTSSEEEEETTSCEEEECG
T ss_pred CCCCCEEEEECCCC-CEEE--EEEEEECCCCEEEEEEecCCeEEecH
Confidence 45789888887643 4444 89999999888888878886655543
Done!