Query 017729
Match_columns 367
No_of_seqs 155 out of 271
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oqc_A UFSP2, UFM1-specific pr 100.0 2.5E-99 9E-104 758.2 31.9 331 18-367 124-481 (481)
2 2z84_A UFSP1, UFM1-specific pr 100.0 3.6E-77 1.2E-81 553.4 16.9 192 164-364 3-212 (218)
3 2p82_A Cysteine protease ATG4A 98.1 9.2E-06 3.2E-10 80.2 9.4 67 188-256 67-155 (355)
4 2cy7_A Cysteine protease APG4B 98.0 2.3E-05 7.9E-10 78.4 11.5 66 188-255 71-158 (396)
5 3erv_A Putative C39-like pepti 89.0 2.1 7.3E-05 39.8 9.8 112 191-323 47-199 (236)
6 3k8u_A Putative ABC transporte 46.8 1.2E+02 0.0041 24.9 9.1 97 192-322 15-116 (156)
7 1zsq_A Myotubularin-related pr 46.6 5.1 0.00017 41.5 0.7 105 214-338 282-387 (528)
8 3zua_A CLD, alpha-hemolysin tr 46.5 1.1E+02 0.0039 24.6 9.9 97 193-323 13-110 (142)
9 1lw3_A Myotubularin-related pr 40.5 7.2 0.00025 41.5 0.7 105 214-338 354-459 (657)
10 3b79_A Toxin secretion ATP-bin 35.7 1E+02 0.0035 24.0 6.7 97 193-323 6-103 (129)
No 1
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}
Probab=100.00 E-value=2.5e-99 Score=758.16 Aligned_cols=331 Identities=38% Similarity=0.682 Sum_probs=295.6
Q ss_pred cceeEEEEEeecCCCCCCCCCCeeeeecCcccceeEEEeeeeeEEEEecccCcHHHHHHHhhHHHHHHHHHHHHHHhhch
Q 017729 18 GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPY 97 (367)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~ld~l~~~~~~~~~~~~~~~l~~~~l~~ql~~~~~~~~~~ 97 (367)
-++|+|.+|.+.|...+ +.+|++++-. .....+.+++++|+++.++++.++..+ .++|++++++||+.|+++++++
T Consensus 124 ~~vi~~~~~~~~~~~~~-~~~p~i~~~~--~~~~~~~~~l~vd~~~~v~~~~~~~~~-~~~l~~~~~~ql~~~e~~~~~~ 199 (481)
T 3oqc_A 124 QQIVNIDLMLEISTPLG-AVTPILEAEN--EEHHYINMSLPIDAVVSVAPEESWGKV-RKLLVDAILRQLVDVEKCILRY 199 (481)
T ss_dssp CEEEEEEEEECCC--------------------CEEEEEEEEEEEEEECTTSBTTSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeehhhhhhcCCCC-ccceEEEEec--ccceEEEEEeEeeEEEEecccccHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999988775 7789999766 456778899999999999999999886 4899999999999999999998
Q ss_pred hhh-cCCCccceeecCCCCCCCeEEEecCCCCcchhhhhhhcccccchhhhhhhhhhc--------ccccccccc---cc
Q 017729 98 LLT-QHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQL--------IVEALSCIV---HL 165 (367)
Q Consensus 98 ~~~-~~~~~~~~hf~p~~~~~~~t~~y~~~~~~~~~~~~~~r~~~~~~~~lh~~~l~l--------~~n~~~~~~---~~ 165 (367)
+++ +...+++|||+|++++|+|||+||.+.+|++ ..++|+ .|| ++|.| ++||++|++ ..
T Consensus 200 ~~~~~~~~~~~~hf~~~~~~~~~tv~yp~~~~d~~--~~~~R~------~lH-~~~~Lp~~rP~~R~~na~~~~~~~~~~ 270 (481)
T 3oqc_A 200 MKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQ--LQAYRK------ELH-DLFNLPHDRPYFKRINAYHFPDELYKD 270 (481)
T ss_dssp CBTTBCCCEEEEEECCTTCSSCEEEEEETTCCGGG--SHHHHH------HHH-HHTTCCTTSCSSSGGGSCCCTTCCCTT
T ss_pred hcCCccccCccceecCCCCCccEEEEcCCCCCcHH--HHHHHH------HHH-HHhCCCcCCCeeeeeccccCCCCcccc
Confidence 875 5678899999999999999999999887633 446999 899 68888 689999964 47
Q ss_pred cccccccccc---------eeeeecC------CCCCCCCCCcccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHhcC
Q 017729 166 ALVKHKNLKI---------MSALSWM------LKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIG 230 (367)
Q Consensus 166 ~lL~n~H~~l---------~~lv~G~------~qd~~~D~GWGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~aw 230 (367)
++|+|||++| +++|+|+ +||+++|+||||||||||||||||+.|+|+.++||||++||++||+||
T Consensus 271 ~lL~n~H~~L~~p~~~~g~~~lv~G~Y~Y~HY~qD~~~D~GWGCGYRnlQtl~Swl~~q~y~~~~iPsi~~IQ~~Le~ag 350 (481)
T 3oqc_A 271 GYIRNPHTYLSPPNIEGSMICVVQGTYAYHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAG 350 (481)
T ss_dssp CCCBCSGGGSCCCSCSSCEEEECCSCCBCCCSSBTTBCCTTTCHHHHHHHHHHHHHHHTTSCCSCCCCHHHHHHHHHHHT
T ss_pred ccccccccCCCCCCCCCceEEEEEeeeeEEEeccCCCCCCCcccchhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcc
Confidence 8999999999 8999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEecCCcceeEEEEEEEeCCCC
Q 017729 231 DKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310 (367)
Q Consensus 231 DK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImigg~ghS~TIvGVe~~~~~G 310 (367)
||+++|+|||+||||+|++++|++++||+|||++|++|++++.+++||++||+++|+||||||++||+||+|||+++.+|
T Consensus 351 Dk~~~f~GSRkWIGT~Ev~~vL~~llgI~cri~~~~~g~el~~l~~~L~~hF~~~GtPImiGG~~~S~TIlGVe~~~~tG 430 (481)
T 3oqc_A 351 DKPATFVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVLAHTILGVAWNETTG 430 (481)
T ss_dssp SSCGGGTTCCCCCCHHHHHHHHHHHHCCCEEEEEECCGGGGGGGHHHHHHHHTTTCCCEEEEETTEEEEEEEEEECTTTC
T ss_pred CCccccccccceechHHHHHHHHHhcCCcEEEEEecChhhHHHHHHHHHHHHhccCCCEEecCCCCCceEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred ceEEEEeCCCCCCchhhhhhhcCCeEeEEecccCCCccccccCCeeeeccCCCCCCC
Q 017729 311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367 (367)
Q Consensus 311 ~~~LLIlDPhytg~~~lk~l~~kGw~gWKk~~~~~g~~~f~~~~fYNLClPq~p~~v 367 (367)
+++||||||||+|++++++|++|||||||+ ++||++++||||||||||++.
T Consensus 431 ~~~lLIlDPHytg~~~l~~i~~kGwv~Wk~------~~ff~~~sfYNLCLPqrp~~~ 481 (481)
T 3oqc_A 431 QIKFLILDPHYTGAEDLQVMLEKGWCGWKS------PDFWNKDAYYNLCLPQRPNAL 481 (481)
T ss_dssp CEEEEEECTTCCSCSCHHHHHHTTSEEEEC------TTSSCSSSCEEEEEECCCCCC
T ss_pred eEEEEEECCCCCChHHHHHHHhCCeecccc------ccccccCCeeeeccCCCCCCC
Confidence 999999999999999999999999999994 499999999999999999974
No 2
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=100.00 E-value=3.6e-77 Score=553.44 Aligned_cols=192 Identities=36% Similarity=0.648 Sum_probs=182.9
Q ss_pred cccccccccccc---------eeeeecC------CCCCCCCCCcccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHh
Q 017729 164 HLALVKHKNLKI---------MSALSWM------LKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVD 228 (367)
Q Consensus 164 ~~~lL~n~H~~l---------~~lv~G~------~qd~~~D~GWGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~ 228 (367)
.++||+|||++| +++|+|+ +||+++|.||||||||||||+|| |+|++++||||++||++||+
T Consensus 3 ~~~~l~n~H~~l~~p~~~g~~~~~v~G~y~Y~HY~~d~~~D~GWGCgYRnlQml~Sw---q~y~~~~iPsi~~IQ~~Le~ 79 (218)
T 2z84_A 3 TLELLKDVHLGLPVPCHDPARLALLSGHYLYYHYGCDGLDDRGWGCGYRTLQTLCSW---PGGQSSGVPGLPALQGALEA 79 (218)
T ss_dssp CCCCCBCTTTTCCCSSSSCSEEEECCSBCBCCCTTTTSCCCTTTCHHHHHHHHHHTT---TBTCCTTCCCHHHHHHHHHH
T ss_pred ccccccChhhcCCCCCCCCcEEEEEEeeeeEEEeccCCcccCCcccchhhhHHHHhh---ccccCCCCCCHHHHHHHHHH
Confidence 467999999998 7999999 79999999999999999999999 79999999999999999999
Q ss_pred cCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEec--CCcceeEEEEEEEe
Q 017729 229 IGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIG--GGVLAYTLLGVDYN 306 (367)
Q Consensus 229 awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImig--g~ghS~TIvGVe~~ 306 (367)
||||+++|+||||||||+|+++||++|+||+|||++|++|++++.+++||++||++.|+||||| +++||+|||||| +
T Consensus 80 awdkg~~~~GSrkWIGt~E~~~~l~sllgI~cki~~~~~g~~~~~~~~~l~~hF~~~g~PI~igG~~~ghS~tIvGve-~ 158 (218)
T 2z84_A 80 MGDKPPGFRGSRNWIGCVEASLCLEHFGGPQGRLCHLPRGVGLRGEEERLYSHFTTGGGPVMVGGDADAQSKALLGIC-E 158 (218)
T ss_dssp TTSSCTTCTTCCCCCCHHHHHHHHHHTTCSEEEEEEECSCSTTTTCHHHHHHHHHTTCCCEEECCTTTSCCEEEEEEE-E
T ss_pred ccccCCccccccceechHHHHHHHHhhcCCceEEEEccCchhHHHHHHHHHHHHhcCCCCEEECCCcccccceEEeEE-e
Confidence 9999999999999999999999999999999999999999999999999999999999999999 569999999999 5
Q ss_pred CCCCceEEEEeCCCCCC-chhhhhhhcCCeEeEEecccCCCccccccCCeeeeccCCCC
Q 017729 307 EASGDCAFLILDPHYTG-NDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRP 364 (367)
Q Consensus 307 ~~~G~~~LLIlDPhytg-~~~lk~l~~kGw~gWKk~~~~~g~~~f~~~~fYNLClPq~p 364 (367)
..+|+++||||||||++ ++++++|++||||+||++ ++||++++||||||||+-
T Consensus 159 ~~~g~~~lLIlDPhy~~~~~~~~~i~~~Gw~~Wk~~-----~~~f~~~~fYNlclp~~~ 212 (218)
T 2z84_A 159 GPGSEVYVLILDPHYWGTPKNRCELQAAGWVGWQKV-----KSVFDSNSFYNLCFTRLE 212 (218)
T ss_dssp CTTCCEEEEEECCCCCSCCCCHHHHHHHTSEEEEEH-----HHHSCTTSCEEEEEEEC-
T ss_pred cCCCcEEEEEECCCcCCchHHHHHHHhCCceeeech-----hhhhccccHHHhccCchh
Confidence 57899999999999999 889999999999999966 389999999999999974
No 3
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=98.08 E-value=9.2e-06 Score=80.19 Aligned_cols=67 Identities=27% Similarity=0.469 Sum_probs=42.6
Q ss_pred CCCCcccchhhHHHHHHH-hhc----cCCCC-CCCCChHHHHHHHHhcCCCC----------------CCccccccccch
Q 017729 188 FSLGWGCAYRSLQTIISW-FRL----QHYAS-VDVPSHREIQQALVDIGDKD----------------PSFVGSREWIGA 245 (367)
Q Consensus 188 ~D~GWGCGYRnLQml~Sw-~~~----q~y~~-~~vPSI~eIQq~Le~awDK~----------------~~fvGSrkWIGT 245 (367)
.|.||||-.|+-|||+.= +.. ..+.- ..-+.-.+.+++|.--.|++ +...| +|.|-
T Consensus 67 SD~GWGCMlRsgQMlLAqaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~G--eWfGP 144 (355)
T 2p82_A 67 SDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIG--EWFGP 144 (355)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTT--CCCCH
T ss_pred CCCccceeeehhHHHHHHHHHHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcc--cccCH
Confidence 699999999999999875 322 12211 11112233344444444443 34444 99999
Q ss_pred hHHHHHHHHhh
Q 017729 246 IELSFVLDKLL 256 (367)
Q Consensus 246 ~Ev~~vL~~~l 256 (367)
..++.+|..+.
T Consensus 145 s~va~~lk~L~ 155 (355)
T 2p82_A 145 NTVAQVLKKLA 155 (355)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 4
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=98.05 E-value=2.3e-05 Score=78.38 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=41.8
Q ss_pred CCCCcccchhhHHHHHHH-hhc----cCCCC-CCCCChHHHHHHHHhcCCCC----------------CCccccccccch
Q 017729 188 FSLGWGCAYRSLQTIISW-FRL----QHYAS-VDVPSHREIQQALVDIGDKD----------------PSFVGSREWIGA 245 (367)
Q Consensus 188 ~D~GWGCGYRnLQml~Sw-~~~----q~y~~-~~vPSI~eIQq~Le~awDK~----------------~~fvGSrkWIGT 245 (367)
-|.||||-.|+-|||+.= +.. ..+.- ..-....+.+++|.--.|++ ++..| +|-|-
T Consensus 71 SD~GWGCMlRsgQMlLAqaL~~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~G--eWfGP 148 (396)
T 2cy7_A 71 SDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIG--QWYGP 148 (396)
T ss_dssp BCTTTCHHHHHHHHHHHHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTT--CCCCH
T ss_pred CCCCccceeeccHHHHHHHHHHHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcc--cccCH
Confidence 699999999999999874 332 22221 11111233444554444543 23333 89999
Q ss_pred hHHHHHHHHh
Q 017729 246 IELSFVLDKL 255 (367)
Q Consensus 246 ~Ev~~vL~~~ 255 (367)
..++.+|..+
T Consensus 149 s~va~~lk~L 158 (396)
T 2cy7_A 149 NTVAQVLKKL 158 (396)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 5
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=89.02 E-value=2.1 Score=39.76 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=75.4
Q ss_pred CcccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHh--------cCCCCCCccccc-------cccchhHHHHHHHHh
Q 017729 191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVD--------IGDKDPSFVGSR-------EWIGAIELSFVLDKL 255 (367)
Q Consensus 191 GWGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~--------awDK~~~fvGSr-------kWIGT~Ev~~vL~~~ 255 (367)
--||+==|++|++.+.-. -.+-.+|.+-|.. -+|...+|+|+= -+|-..++..+.+.|
T Consensus 47 ~~gCe~tSlam~L~y~G~-------~~~~~~la~~l~~~p~~~~g~~gnP~~gFvG~p~~~~~~g~giy~~~i~~~a~~y 119 (236)
T 3erv_A 47 DRGCEVTSLAMMLQYAGI-------TVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKY 119 (236)
T ss_dssp TTCHHHHHHHHHHHHTTC-------CCCHHHHHHHSCEECSEETTEECCTTTSEEBCSSCTTSCBCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCc-------CCCHHHHHHHHhhCcccccCCCCCCccCccCCccccCCCcceeecHHHHHHHHHH
Confidence 357999999999999422 1233455554432 235556888882 356778888889987
Q ss_pred hCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEec--------------------------CCcceeEEEEEEEeCCC
Q 017729 256 LGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIG--------------------------GGVLAYTLLGVDYNEAS 309 (367)
Q Consensus 256 lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImig--------------------------g~ghS~TIvGVe~~~~~ 309 (367)
++- +++++ +|.+++++.++|. .|.||++- ..+|.-.|+|++.+
T Consensus 120 ~~~--~~~dl-tG~sl~~L~~~I~-----~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~~~~~H~VVl~GYd~~--- 188 (236)
T 3erv_A 120 LPN--KAVDL-TGKSIEELYKSVK-----AGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNEHCVVLIGYDQE--- 188 (236)
T ss_dssp CTT--TEEEC-TTSCHHHHHHHHH-----TTCCEEEEEETTSSCCCGGGCEEEEETTEEEEECTTEEEEEEEEECSS---
T ss_pred hhc--ceeec-CCCCHHHHHHHHH-----CCCeEEEEEeCCcccccccccceeecCCCceeeccCCeEEEEEEEeCC---
Confidence 532 45554 5677777777774 48888862 24588889998642
Q ss_pred CceEEEEeCCCCCC
Q 017729 310 GDCAFLILDPHYTG 323 (367)
Q Consensus 310 G~~~LLIlDPhytg 323 (367)
++.|.||....
T Consensus 189 ---~vyi~DP~~g~ 199 (236)
T 3erv_A 189 ---SVYIRDPLKDS 199 (236)
T ss_dssp ---EEEEECTTSCC
T ss_pred ---EEEEECCCCCC
Confidence 58899998643
No 6
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=46.82 E-value=1.2e+02 Score=24.87 Aligned_cols=97 Identities=14% Similarity=0.264 Sum_probs=58.0
Q ss_pred cccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCCh
Q 017729 192 WGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAEL 271 (367)
Q Consensus 192 WGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~ 271 (367)
..||-..|.|++.++... -+..+|.+.+. ++ +.=....++..+.+. +|+.++.+..+-.. +
T Consensus 15 ~dcglacLa~i~~~~g~~-------~s~~~L~~~~~--~~--------~~g~s~~~l~~~a~~-~Gl~a~~~~~~~~~-~ 75 (156)
T 3k8u_A 15 RDCGPAVLASVAKHYGSN-------YSIAYLRELSK--TN--------KQGTTALGIVEAAKK-LGFETRSIKADMTL-F 75 (156)
T ss_dssp TCHHHHHHHHHHHHTTCC-------CCHHHHHHHTT--CB--------TTBCCHHHHHHHHHH-TTEEEEEEECCGGG-G
T ss_pred CCHHHHHHHHHHHHhCCC-------CCHHHHHHHcC--CC--------CCCcCHHHHHHHHHH-CCCeeEEEEeehhh-h
Confidence 459999999999986422 24445544321 11 111233456666776 79999999754210 0
Q ss_pred hHHHHHHHHHhccCCCceEec---CC--cceeEEEEEEEeCCCCceEEEEeCCCCC
Q 017729 272 PEKCRELALHFESQGTPIMIG---GG--VLAYTLLGVDYNEASGDCAFLILDPHYT 322 (367)
Q Consensus 272 ~~l~~~l~~hF~~~gtPImig---g~--ghS~TIvGVe~~~~~G~~~LLIlDPhyt 322 (367)
. ..+...|+++. .+ +|.-.|.|++. + .++|.||...
T Consensus 76 -~--------l~~~~lP~I~~~~~~g~~~hfvVl~~~~~----~--~v~I~DP~~g 116 (156)
T 3k8u_A 76 -D--------YNDLTYPFIVHVIKGKRLQHYYVVYGSQN----N--QLIIGDPDPS 116 (156)
T ss_dssp -G--------CTTCCSCEEEEEEETTEEEEEEEEEEEET----T--EEEEEECSTT
T ss_pred -h--------HhcCCCCEEEEEEecCCCcEEEEEEEEcC----C--EEEEEcCCCC
Confidence 0 12347798873 22 47666666652 2 4899999876
No 7
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=46.63 E-value=5.1 Score=41.48 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=63.0
Q ss_pred CCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEecC
Q 017729 214 VDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGG 293 (367)
Q Consensus 214 ~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImigg 293 (367)
..|++|..+++.+.+.-+-=..-....+|....|-+-=|.+. ..+-.....|++..+..+++|.+..
T Consensus 282 ~~i~nIh~~r~S~~kL~~~~~~~~~~~~wls~Le~s~WL~~i-------------~~iL~~a~~ia~~l~~~~~sVLvhc 348 (528)
T 1zsq_A 282 LDIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHI-------------KLILAGALRIADKVESGKTSVVVHS 348 (528)
T ss_dssp CCCCCHHHHHHHHHHHHHHHSSCCCGGGHHHHHHHHCHHHHH-------------HHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHhCCCCcchhHHHHhHhcccHHHH-------------HHHHHHHHHHHHHHHcCCceEEEEC
Confidence 468999988877665421000012356788777765544431 0122344566677777777877764
Q ss_pred -CcceeEEEEEEEeCCCCceEEEEeCCCCCCchhhhhhhcCCeEeE
Q 017729 294 -GVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGW 338 (367)
Q Consensus 294 -~ghS~TIvGVe~~~~~G~~~LLIlDPhytg~~~lk~l~~kGw~gW 338 (367)
+|-=+|-. --...=|+|||+|++=+--..|++|-|+..
T Consensus 349 sdGwDrT~q-------l~SLaqllLDPyyRTi~GF~~LIEKEWlsf 387 (528)
T 1zsq_A 349 SDGWDRTAQ-------LTSLAMLMLDGYYRTIRGFEVLVEKEWLSF 387 (528)
T ss_dssp SSSSSHHHH-------HHHHHHHHHCGGGGSHHHHHHHHHHHTTTT
T ss_pred CCCccchHH-------HHHHHHHHcCccccHHHHHHHHHHhHHhhc
Confidence 33211111 012334899999999988889999987643
No 8
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=46.55 E-value=1.1e+02 Score=24.57 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=58.4
Q ss_pred ccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChh
Q 017729 193 GCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELP 272 (367)
Q Consensus 193 GCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~ 272 (367)
-||-..|.|++.++... -+..+|.+.+. + +++=....++.-+.+. +|+.++.+..+ ..
T Consensus 13 dcglacLa~i~~~~g~~-------~s~~~L~~~~~--~--------~~~g~s~~~l~~aa~~-~Gl~a~~~~~~----~~ 70 (142)
T 3zua_A 13 DYGLYALEILAQYHNVS-------VNPEEIKHRFD--T--------DGTGLGLTSWLLAAKS-LELKVKQVKKT----ID 70 (142)
T ss_dssp CHHHHHHHHHHHHTTCC-------CCHHHHHHHTC--T--------TSSCCCHHHHHHHHHT-TTEEEEEEECC----HH
T ss_pred CcHHHHHHHHHHHcCCC-------CCHHHHHHHcC--C--------CcCCcCHHHHHHHHHH-CCCeeEEeecC----HH
Confidence 49999999999986432 23444444321 1 1121233455566776 79999998752 22
Q ss_pred HHHHHHHHHhccCCCceEecC-CcceeEEEEEEEeCCCCceEEEEeCCCCCC
Q 017729 273 EKCRELALHFESQGTPIMIGG-GVLAYTLLGVDYNEASGDCAFLILDPHYTG 323 (367)
Q Consensus 273 ~l~~~l~~hF~~~gtPImigg-~ghS~TIvGVe~~~~~G~~~LLIlDPhytg 323 (367)
. +.+...|.++-- +++...|++++.+ +-.++|.||...+
T Consensus 71 ~--------L~~l~lP~Il~~~~g~~~Vv~~~~~~----~~~~~I~dP~~g~ 110 (142)
T 3zua_A 71 R--------LNFISLPALVWREDGRHFILTKVSKE----ANRYLIFDLEQRN 110 (142)
T ss_dssp H--------HTTSSSSEEECCTTSCCEEEEEEETT----TTEEEEEETTTTE
T ss_pred H--------HhcCCCCEEEEEcCCCEEEEEEEeCC----CCEEEEEcCCCCC
Confidence 1 233478999863 6666666664421 1248999997653
No 9
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=40.48 E-value=7.2 Score=41.50 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=63.0
Q ss_pred CCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEecC
Q 017729 214 VDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGG 293 (367)
Q Consensus 214 ~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImigg 293 (367)
..|++|..+++.+.+.-+-=..-....+|....|-+-=|.+.- .+-.....|++..+..+++|.+..
T Consensus 354 l~I~nIh~mr~S~~KL~~~c~p~~~~~~wls~Le~S~WL~hI~-------------~iL~~A~~ia~~l~~~~~sVLVhc 420 (657)
T 1lw3_A 354 LDIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIK-------------LILAGALRIADKVESGKTSVVVHS 420 (657)
T ss_dssp CCCCCHHHHHHHHHHHHHHHSSCCCGGGHHHHHHHHCHHHHHH-------------HHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCccHHHHHHHHHHHHHHhCCCCcchhHHHHHHhcccHHHHH-------------HHHHHHHHHHHHHHcCCceEEEEC
Confidence 4689999888776654210000123567888777655444310 122344566677777777877764
Q ss_pred -CcceeEEEEEEEeCCCCceEEEEeCCCCCCchhhhhhhcCCeEeE
Q 017729 294 -GVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGW 338 (367)
Q Consensus 294 -~ghS~TIvGVe~~~~~G~~~LLIlDPhytg~~~lk~l~~kGw~gW 338 (367)
+|-=+|-. --...=|+|||+|++=+--..|++|-|+..
T Consensus 421 sDGwDrT~q-------lsSLaQLlLDPyYRTi~GF~vLIEKEWlsf 459 (657)
T 1lw3_A 421 SDGWDRTAQ-------LTSLAMLMLDGYYRTIRGFEVLVEKEWLSF 459 (657)
T ss_dssp SSSSSHHHH-------HHHHHHHHHCGGGGSHHHHHHHHHHHTTTT
T ss_pred CCCccchHH-------HHHHHHHHhCccccHHHHHHHHHHHHHHhc
Confidence 33221111 012334899999999988889999988643
No 10
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=35.70 E-value=1e+02 Score=24.00 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=55.7
Q ss_pred ccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChh
Q 017729 193 GCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELP 272 (367)
Q Consensus 193 GCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~ 272 (367)
-||-..|.|++.++... -+..+|.+.+. ++ ++=....++....+. +|+.++.+..+- +++
T Consensus 6 dcgla~L~~i~~~~g~~-------~~~~~l~~~~~--~~--------~~g~s~~~l~~~a~~-~Gl~~~~~~~~~-~~L- 65 (129)
T 3b79_A 6 DPLLNSLIYVSRYYGLA-------NSPEALVNGLP--LS--------DGKLTPFLLPRAAER-AGLVAKENRAEL-EKI- 65 (129)
T ss_dssp CHHHHHHHHHHHHTTCC-------CCHHHHHTTCC--CB--------TTBCCTTTHHHHHHH-HTEEEEEEECCG-GGS-
T ss_pred CcHHHHHHHHHHHhCCC-------CCHHHHHhcCC--Cc--------CCCCCHHHHHHHHHH-CCCeEEEEECCH-HHC-
Confidence 59999999999986432 13333332221 11 111122345555665 799999988531 111
Q ss_pred HHHHHHHHHhccCCCceEe-cCCcceeEEEEEEEeCCCCceEEEEeCCCCCC
Q 017729 273 EKCRELALHFESQGTPIMI-GGGVLAYTLLGVDYNEASGDCAFLILDPHYTG 323 (367)
Q Consensus 273 ~l~~~l~~hF~~~gtPImi-gg~ghS~TIvGVe~~~~~G~~~LLIlDPhytg 323 (367)
.....|.++ -.++|.-.+.|++.+ | -.++|.||....
T Consensus 66 ----------~~l~lP~I~~~~~~h~vVl~~~~~~---~-~~~~i~dp~~~~ 103 (129)
T 3b79_A 66 ----------SSLILPAILVLKGGDSCVLNSINME---T-REAEVTTLESGM 103 (129)
T ss_dssp ----------CGGGCSEEEEEGGGEEEEEEEEETT---T-TEEEEECTTTTT
T ss_pred ----------CcCCCCEEEEEcCCCEEEEEEEcCC---C-ceEEEEccCCCC
Confidence 122468775 346677777787632 2 147899998433
Done!