Query 017729
Match_columns 367
No_of_seqs 155 out of 271
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 04:00:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017729.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017729hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2z0da1 d.3.1.22 (A:5-354) Cys 98.0 2.2E-05 1.6E-09 74.9 11.7 67 188-256 64-152 (350)
2 d2p82a1 d.3.1.22 (A:26-359) Cy 97.9 3.1E-05 2.2E-09 73.4 11.2 69 188-256 46-134 (334)
3 d1zsqa2 c.45.1.3 (A:199-585) M 31.1 0.64 4.7E-05 44.0 -6.3 104 214-337 153-257 (387)
4 d1dxla2 c.3.1.5 (A:153-275) Di 23.9 45 0.0033 24.8 4.6 48 245-293 37-87 (123)
5 d2r9fa1 d.3.1.3 (A:33-354) Cal 18.5 92 0.0067 27.0 6.2 93 221-320 154-266 (322)
6 d1ebda2 c.3.1.5 (A:155-271) Di 16.8 1.2E+02 0.0089 21.6 5.7 49 245-294 34-85 (117)
7 d2ewca1 d.79.1.1 (A:3-122) Hyp 16.5 12 0.00086 28.8 -0.5 50 16-65 57-118 (120)
8 d3lada2 c.3.1.5 (A:159-277) Di 14.8 1.2E+02 0.0087 22.1 5.2 50 245-295 34-86 (119)
9 d1h6va2 c.3.1.5 (A:171-292) Ma 13.4 2.3E+02 0.017 20.5 8.4 48 246-294 33-82 (122)
10 d2hafa1 d.310.1.1 (A:15-192) H 13.3 72 0.0053 25.4 3.7 22 286-307 70-91 (178)
No 1
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.96 E-value=2.2e-05 Score=74.85 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=38.6
Q ss_pred CCCCcccchhhHHHHHHH-hhcc----CCCC-CCCCChHHHHHHHHhcCCCC----------------CCccccccccch
Q 017729 188 FSLGWGCAYRSLQTIISW-FRLQ----HYAS-VDVPSHREIQQALVDIGDKD----------------PSFVGSREWIGA 245 (367)
Q Consensus 188 ~D~GWGCGYRnLQml~Sw-~~~q----~y~~-~~vPSI~eIQq~Le~awDK~----------------~~fvGSrkWIGT 245 (367)
-|.||||-.|+-|||+.- ++.. ++.- ..-....+..++|.--.|.+ +... .+|-|-
T Consensus 64 SD~GWGCMlRsgQMlLA~aL~~~~lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~--GeWfGP 141 (350)
T d2z0da1 64 SDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSI--GQWYGP 141 (350)
T ss_dssp BCTTTCHHHHHHHHHHHHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHHTTCCT--TCCBCH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCcccccccccCcHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCC--ccccCH
Confidence 599999999999999885 4321 2220 01111122222222222222 2222 479999
Q ss_pred hHHHHHHHHhh
Q 017729 246 IELSFVLDKLL 256 (367)
Q Consensus 246 ~Ev~~vL~~~l 256 (367)
..++.++..+.
T Consensus 142 s~~a~~ik~L~ 152 (350)
T d2z0da1 142 NTVAQVLKKLA 152 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 2
>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.89 E-value=3.1e-05 Score=73.40 Aligned_cols=69 Identities=25% Similarity=0.399 Sum_probs=39.6
Q ss_pred CCCCcccchhhHHHHHHH-hhc----cCCC-CCCCCChHHHHHHHHhcCCCCC--------------CccccccccchhH
Q 017729 188 FSLGWGCAYRSLQTIISW-FRL----QHYA-SVDVPSHREIQQALVDIGDKDP--------------SFVGSREWIGAIE 247 (367)
Q Consensus 188 ~D~GWGCGYRnLQml~Sw-~~~----q~y~-~~~vPSI~eIQq~Le~awDK~~--------------~fvGSrkWIGT~E 247 (367)
-|.||||-.|+-|||+.- ++. .++. ...-..-.+.+++|.--.|.+. .-.--.+|-|-..
T Consensus 46 SD~GWGCMlRsgQMlLA~aL~~~~lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~G~WfgPs~ 125 (334)
T d2p82a1 46 SDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNT 125 (334)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHH
T ss_pred CCcChhHHHHHHHHHHHHHHHHHhcCCccccccccCccHHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCCcccccCHHH
Confidence 699999999999999885 422 1222 0011111233333333223220 0011258999999
Q ss_pred HHHHHHHhh
Q 017729 248 LSFVLDKLL 256 (367)
Q Consensus 248 v~~vL~~~l 256 (367)
++.++..+.
T Consensus 126 ~a~~i~~L~ 134 (334)
T d2p82a1 126 VAQVLKKLA 134 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 3
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.11 E-value=0.64 Score=43.99 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=68.2
Q ss_pred CCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEecC
Q 017729 214 VDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGG 293 (367)
Q Consensus 214 ~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImigg 293 (367)
..+|+|..+++.+.+..+.=..-....+|..+.|.+-=|++. ..+-.....+++.-..++++|++..
T Consensus 153 ~~i~nih~vr~s~~kl~~~~~~~~~~~~~~s~le~s~WL~~i-------------~~~L~~A~~ia~~l~~~~~sVlVh~ 219 (387)
T d1zsqa2 153 LDIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHI-------------KLILAGALRIADKVESGKTSVVVHS 219 (387)
T ss_dssp CCCCCHHHHHHHHHHHHHHHSSCCCGGGHHHHHHHHCHHHHH-------------HHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred ecccchHHHHHHHHHHHHHhcCCCchhhHHhhccccchHHHH-------------HHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 689999999998877643110012346788888866555431 1123445677777778888887764
Q ss_pred -CcceeEEEEEEEeCCCCceEEEEeCCCCCCchhhhhhhcCCeEe
Q 017729 294 -GVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCG 337 (367)
Q Consensus 294 -~ghS~TIvGVe~~~~~G~~~LLIlDPhytg~~~lk~l~~kGw~g 337 (367)
+|--+|-+ | -...=|++||+|++=+--..|++|-|+.
T Consensus 220 sdGwD~T~q-v------sSL~ql~lDpyyRTi~GF~~LIekewi~ 257 (387)
T d1zsqa2 220 SDGWDRTAQ-L------TSLAMLMLDGYYRTIRGFEVLVEKEWLS 257 (387)
T ss_dssp SSSSSHHHH-H------HHHHHHHHCGGGGSHHHHHHHHHHHTTT
T ss_pred CCCCchhHH-H------HHHHHHHhCcccccHHHHHHHHHHHHHh
Confidence 45444422 0 1234588999999999888999998764
No 4
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=23.90 E-value=45 Score=24.78 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhhCCcEEEEEecCC---CChhHHHHHHHHHhccCCCceEecC
Q 017729 245 AIELSFVLDKLLGVSCKVLNVRSG---AELPEKCRELALHFESQGTPIMIGG 293 (367)
Q Consensus 245 T~Ev~~vL~~~lGI~ckIv~f~sg---~e~~~l~~~l~~hF~~~gtPImigg 293 (367)
..|++..|.. +|.+..++..++. ..-+...+++.++|++.|-.|+.+.
T Consensus 37 glE~A~~~~~-~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~ 87 (123)
T d1dxla2 37 GLEMGSVWGR-IGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKT 87 (123)
T ss_dssp HHHHHHHHHH-HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSE
T ss_pred HHHHHHHHHh-cCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCC
Confidence 4799999997 8999998875441 2336789999999999998888765
No 5
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}
Probab=18.52 E-value=92 Score=27.00 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCCCCcccccc--ccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccC---------CC--
Q 017729 221 EIQQALVDIGDKDPSFVGSRE--WIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQ---------GT-- 287 (367)
Q Consensus 221 eIQq~Le~awDK~~~fvGSrk--WIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~---------gt-- 287 (367)
-.-..||+|+-| +.||-. .-|. +.-.|..+.|-++..+++....+ .+.+.|..+++.. .+
T Consensus 154 ~W~~LlEKAyAK---l~GsY~~l~gG~--~~~aL~~LTG~~~~~~~~~~~~~--~~~~~l~~~~~~g~~~~~~~~~~~~~ 226 (322)
T d2r9fa1 154 FWSALLEKAYAK---VNGSYEALSGGC--TSEAFEDFTGGVTEWYDLQKAPS--DLYQIILKALERGSLLGCSINISDIR 226 (322)
T ss_dssp CHHHHHHHHHHH---HHTSSGGGSSCC--HHHHHHHTTCCEEEEEEGGGCCT--THHHHHHHHHHHTCEEEEECCCSSSS
T ss_pred cHHHHHHHHHHH---HhCCccccCCCC--HHHHHHHhcCCCcEEEEcccCch--hHHHHHHHHHHCCCceEEEEecCCcc
Confidence 356678888765 122211 1122 22346667899999998866432 2445555555421 00
Q ss_pred ---ceEecC--CcceeEEEEEEEeC-CCCceEEE-EeCCC
Q 017729 288 ---PIMIGG--GVLAYTLLGVDYNE-ASGDCAFL-ILDPH 320 (367)
Q Consensus 288 ---PImigg--~ghS~TIvGVe~~~-~~G~~~LL-IlDPh 320 (367)
..--.| .+|||+|+++.... ..+.++|| +=+|.
T Consensus 227 ~~e~~~~~GLv~~HaYsVl~v~~~~~~~~~~~Lv~LRNPw 266 (322)
T d2r9fa1 227 DLEAITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPW 266 (322)
T ss_dssp TTCSBCTTSCBTTCCEEEEEEEEEEETTEEEEEEEEECTT
T ss_pred chhhhhhcCCcCCcceEEEEEEEEeeCCCcEEEEEEECCC
Confidence 000112 68999999986532 33445655 77884
No 6
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.78 E-value=1.2e+02 Score=21.65 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhhCCcEEEEEecCC---CChhHHHHHHHHHhccCCCceEecCC
Q 017729 245 AIELSFVLDKLLGVSCKVLNVRSG---AELPEKCRELALHFESQGTPIMIGGG 294 (367)
Q Consensus 245 T~Ev~~vL~~~lGI~ckIv~f~sg---~e~~~l~~~l~~hF~~~gtPImigg~ 294 (367)
..|++..|.. +|.+..+++-.+. ..-+++.+.+.++|++.|--++++..
T Consensus 34 g~E~A~~l~~-~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~ 85 (117)
T d1ebda2 34 GIELGTAYAN-FGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNAL 85 (117)
T ss_dssp HHHHHHHHHH-TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEE
T ss_pred ceeeeeeecc-cccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCE
Confidence 3688888887 7999998885431 22256888999999999999988853
No 7
>d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]}
Probab=16.50 E-value=12 Score=28.80 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=33.0
Q ss_pred cccceeEEEEEeecCCCCCCCCCCeeeeecCcccceeEE------------EeeeeeEEEEe
Q 017729 16 FCGDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLV------------VDWKLDVLCYA 65 (367)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~------------~~~~ld~l~~~ 65 (367)
--.|++++++|+-.-..-..-..-..+||+...|++-.+ +.+++|+++|.
T Consensus 57 ~~~dVvkvtvyltd~~~~~~~~~v~~~~f~~~~PArt~v~~~~~~~~~~~g~~vEIdavA~~ 118 (120)
T d2ewca1 57 TLDAVVQMDCLFRDVWNIPVMEKMIKERFNGRYPARKSIQTEFAHHGGPQGLLFQVDGVAYS 118 (120)
T ss_dssp CGGGEEEEEEEESSGGGHHHHHHHHHHHSTTCCCEEEEEECCCSSCCSTTCCCEEEEEEEEC
T ss_pred CHHHheeeeeeeccHHHHHHHHHHHHHHcCCCCCcceEEEeeehhccCCCCCEEEEEEEEEe
Confidence 346899999988543322222234678888877776543 56788888874
No 8
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Probab=14.76 E-value=1.2e+02 Score=22.06 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhhCCcEEEEEecCC---CChhHHHHHHHHHhccCCCceEecCCc
Q 017729 245 AIELSFVLDKLLGVSCKVLNVRSG---AELPEKCRELALHFESQGTPIMIGGGV 295 (367)
Q Consensus 245 T~Ev~~vL~~~lGI~ckIv~f~sg---~e~~~l~~~l~~hF~~~gtPImigg~g 295 (367)
..|.+..|.. +|.+..++...+- ..-++..+++.++|++.|--++.+...
T Consensus 34 g~E~A~~l~~-~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v 86 (119)
T d3lada2 34 GLELGSVWAR-LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARV 86 (119)
T ss_dssp HHHHHHHHHH-TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred HHHHHHHHHH-cCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEE
Confidence 3799998987 7999999986541 223678899999999999888887543
No 9
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.43 E-value=2.3e+02 Score=20.54 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhCCcEEEEEecC--CCChhHHHHHHHHHhccCCCceEecCC
Q 017729 246 IELSFVLDKLLGVSCKVLNVRS--GAELPEKCRELALHFESQGTPIMIGGG 294 (367)
Q Consensus 246 ~Ev~~vL~~~lGI~ckIv~f~s--g~e~~~l~~~l~~hF~~~gtPImigg~ 294 (367)
.|.+..|.. +|.+..|+.-++ ...-+++.+.+.++|+..|-.++.+..
T Consensus 33 ~E~A~~l~~-lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~ 82 (122)
T d1h6va2 33 LECAGFLAG-IGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV 82 (122)
T ss_dssp HHHHHHHHH-TTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCE
T ss_pred HHHHHHHhh-cCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCE
Confidence 788888998 899999996322 222357889999999999988888743
No 10
>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]}
Probab=13.31 E-value=72 Score=25.43 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=17.4
Q ss_pred CCceEecCCcceeEEEEEEEeC
Q 017729 286 GTPIMIGGGVLAYTLLGVDYNE 307 (367)
Q Consensus 286 gtPImigg~ghS~TIvGVe~~~ 307 (367)
..|||+||.+..-.+.-+....
T Consensus 70 ~~~v~~GGPV~~~~~~~Lh~~~ 91 (178)
T d2hafa1 70 KKPVFNGGPVSEDRGFILHRPR 91 (178)
T ss_dssp GSEEEECCSEEEEEEEEEECCC
T ss_pred ccceEecccccCCceEEEecCC
Confidence 4699999999887777777654
Done!